seer-pas-sdk 0.3.2__py3-none-any.whl → 0.3.3__py3-none-any.whl

seer_pas_sdk/core/sdk.py

@@ -1737,7 +1737,32 @@ class SeerSDK:
                 raise ServerError(
                     "Could not fetch protein results table. Please verify that your analysis completed."
                 )
-            return dict_to_df(res.json()) if as_df else res.json()
+            res = dict_to_df(res.json())
+            res.rename(
+                columns={
+                    "proteinId": "uniprot_id",
+                    "n": "n_samples",
+                    "bp": "biological_process",
+                    "mf": "molecular_function",
+                    "cc": "cellular_component",
+                    "nFrac": "fraction_samples",
+                    "proteinNames": "protein_name",
+                    "geneName": "gene_name",
+                },
+                inplace=True,
+            )
+
+            res.drop(
+                columns=[
+                    "median_undefined",
+                    "n_undefined",
+                    "n_null",
+                    "median_null",
+                ],
+                inplace=True,
+                errors="ignore",
+            )
+            return res if as_df else res.to_dict(orient="records")
 
     def get_peptide_results_table(
         self,
@@ -1779,9 +1804,28 @@ class SeerSDK:
             )
             if res.status_code != 200:
                 raise ServerError(
-                    "Could not fetch protein results table. Please verify that your analysis completed."
+                    "Could not fetch peptide results table. Please verify that your analysis completed."
                 )
-            return dict_to_df(res.json()) if as_df else res.json()
+            res = dict_to_df(res.json())
+            res.rename(
+                columns={
+                    "proteinId": "uniprot_id",
+                    "n": "n_samples",
+                    "bp": "biological_process",
+                    "mf": "molecular_function",
+                    "cc": "cellular_component",
+                    "nFrac": "fraction_samples",
+                    "proteinNames": "protein_name",
+                    "geneName": "gene_name",
+                },
+                inplace=True,
+            )
+
+            res.drop(columns=["n_undefined"], inplace=True, errors="ignore")
+            res.drop(
+                columns=["median_undefined"], inplace=True, errors="ignore"
+            )
+            return res if as_df else res.to_dict(orient="records")
 
     def list_ms_data_files(self, folder="", space=None):
         """

{seer_pas_sdk-0.3.2.dist-info → seer_pas_sdk-0.3.3.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: seer-pas-sdk
-Version: 0.3.2
+Version: 0.3.3
 Summary: SDK for Seer Proteograph Analysis Suite (PAS)
 Author-email: Ryan Sun <rsun@seer.bio>
 License: 

{seer_pas_sdk-0.3.2.dist-info → seer_pas_sdk-0.3.3.dist-info}/RECORD

@@ -5,14 +5,14 @@ seer_pas_sdk/common/__init__.py,sha256=jA5qm-t9x3qXMp5Q6v7vV2kZdLw32-lnbtf0fPY4l
 seer_pas_sdk/common/errors.py,sha256=4HFORWnaQQCMXRE8kwdsJWvQRB_3KFEZ7yMb391e4gA,142
 seer_pas_sdk/common/groupanalysis.py,sha256=DxB-gbQfYzl7p9MTYWDIqghcH-IeakzdYdrRZrlIHek,1730
 seer_pas_sdk/core/__init__.py,sha256=rxbKgg-Qe24OaxX2zyHHYPYgDCTEKE_-41bB2wvpvL4,25
-seer_pas_sdk/core/sdk.py,sha256=P8t_QNS8YmwBhdTtkbW02RhzN0Mb2u9F92JAOqvvmUg,105847
+seer_pas_sdk/core/sdk.py,sha256=yjQAMDH5FTz-EQeB5d_Q0Qq9P-2Ca9bF2pVeDSR4GtU,107380
 seer_pas_sdk/core/unsupported.py,sha256=XAPZ3tidqjnsgftf3NUdTGIzvnsjHy0e_eGRCAo6GPo,59890
 seer_pas_sdk/objects/__init__.py,sha256=HJLS6sOr7DfzdI14fv5dWcITEj5QQsKcdfED3YNvUrY,107
 seer_pas_sdk/objects/groupanalysis.py,sha256=x3D_5NmYBoPDilNCQqUoCFARIfIeUq4FBY3_N6u8tfM,994
 seer_pas_sdk/objects/platemap.py,sha256=8IvJPAecs_e_FyqibzhCw-O4zjCFnf-zMUp_5krTEsg,5864
 seer_pas_sdk/objects/volcanoplot.py,sha256=tKuCWDIdoO8FLJlhpXhuwHn0aMYnvudTugxAslDXyGs,9357
-seer_pas_sdk-0.3.2.dist-info/licenses/LICENSE.txt,sha256=DVQuDIgE45qn836wDaWnYhSdxoLXgpRRKH4RuTjpRZQ,10174
-seer_pas_sdk-0.3.2.dist-info/METADATA,sha256=WZECPlPd8k2mEgEznlhfXqYbbMHbdOZn8q2D51B4blo,13448
-seer_pas_sdk-0.3.2.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
-seer_pas_sdk-0.3.2.dist-info/top_level.txt,sha256=-2kZ-KFMGtXwr8H1O5llMKlcJ8gRKohEmrIvazXB61s,13
-seer_pas_sdk-0.3.2.dist-info/RECORD,,
+seer_pas_sdk-0.3.3.dist-info/licenses/LICENSE.txt,sha256=DVQuDIgE45qn836wDaWnYhSdxoLXgpRRKH4RuTjpRZQ,10174
+seer_pas_sdk-0.3.3.dist-info/METADATA,sha256=LfLErPJW2iZBwSfBgZU61azIJtvDdh2d4Zvviv5zyjM,13448
+seer_pas_sdk-0.3.3.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
+seer_pas_sdk-0.3.3.dist-info/top_level.txt,sha256=-2kZ-KFMGtXwr8H1O5llMKlcJ8gRKohEmrIvazXB61s,13
+seer_pas_sdk-0.3.3.dist-info/RECORD,,