secondbrain-py 0.2.1__py3-none-any.whl

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Files changed (273) hide show
  1. brain/__init__.py +0 -0
  2. brain/__main__.py +18 -0
  3. brain/_capture_command.py +445 -0
  4. brain/_compose.py +52 -0
  5. brain/activity.py +206 -0
  6. brain/ask.py +631 -0
  7. brain/audio.py +591 -0
  8. brain/backfill/__init__.py +12 -0
  9. brain/backfill/search_extras.py +141 -0
  10. brain/backfill/source_rows.py +101 -0
  11. brain/bin/__init__.py +1 -0
  12. brain/bin/_launcher.py +107 -0
  13. brain/bin/down.py +8 -0
  14. brain/bin/launchd.py +268 -0
  15. brain/bin/monitor.py +570 -0
  16. brain/bin/rebuild.py +8 -0
  17. brain/bin/status.py +8 -0
  18. brain/bin/up.py +8 -0
  19. brain/brief.py +272 -0
  20. brain/capture.py +49 -0
  21. brain/chat.py +293 -0
  22. brain/cli.py +9760 -0
  23. brain/cli_claude.py +81 -0
  24. brain/cli_connect.py +285 -0
  25. brain/cli_demo.py +266 -0
  26. brain/config.py +1949 -0
  27. brain/connect.py +925 -0
  28. brain/db.py +540 -0
  29. brain/demo/__init__.py +452 -0
  30. brain/demo/corpus/manifest.json +403 -0
  31. brain/demo/embedder.py +74 -0
  32. brain/durations.py +84 -0
  33. brain/edit_session.py +156 -0
  34. brain/editor.py +67 -0
  35. brain/elicit/__init__.py +16 -0
  36. brain/elicit/detectors.py +250 -0
  37. brain/elicit/drafter.py +70 -0
  38. brain/elicit/queue.py +220 -0
  39. brain/elicit/schema.py +48 -0
  40. brain/elicit/session.py +445 -0
  41. brain/embedding_targets.py +54 -0
  42. brain/embeddings.py +424 -0
  43. brain/enrichment.py +808 -0
  44. brain/errors.py +357 -0
  45. brain/eval/__init__.py +129 -0
  46. brain/eval/answer_eval.py +281 -0
  47. brain/eval/baseline.py +265 -0
  48. brain/eval/concept_extraction.py +378 -0
  49. brain/eval/corpus.py +152 -0
  50. brain/eval/errors.py +19 -0
  51. brain/eval/graph_baseline.py +226 -0
  52. brain/eval/graph_retrieval.py +202 -0
  53. brain/eval/graph_runner.py +319 -0
  54. brain/eval/metrics.py +101 -0
  55. brain/eval/runner.py +223 -0
  56. brain/format.py +783 -0
  57. brain/gaps.py +390 -0
  58. brain/graph_rag/__init__.py +94 -0
  59. brain/graph_rag/_retrieval_common.py +113 -0
  60. brain/graph_rag/aggregates.py +303 -0
  61. brain/graph_rag/aliases/__init__.py +583 -0
  62. brain/graph_rag/backends/__init__.py +10 -0
  63. brain/graph_rag/backends/_age_helpers.py +473 -0
  64. brain/graph_rag/backends/age.py +782 -0
  65. brain/graph_rag/backends/base.py +272 -0
  66. brain/graph_rag/build.py +344 -0
  67. brain/graph_rag/communities.py +644 -0
  68. brain/graph_rag/communities_summary.py +437 -0
  69. brain/graph_rag/concepts.py +202 -0
  70. brain/graph_rag/cooccur.py +193 -0
  71. brain/graph_rag/cross_type.py +312 -0
  72. brain/graph_rag/extract.py +885 -0
  73. brain/graph_rag/fuse.py +371 -0
  74. brain/graph_rag/global_.py +412 -0
  75. brain/graph_rag/grouping.py +372 -0
  76. brain/graph_rag/person_resolver.py +167 -0
  77. brain/graph_rag/reconcile.py +792 -0
  78. brain/graph_rag/relational.py +353 -0
  79. brain/graph_rag/retrieve.py +526 -0
  80. brain/graph_rag/router.py +288 -0
  81. brain/graph_rag/schema.py +320 -0
  82. brain/graph_rag/sync.py +237 -0
  83. brain/graph_rag/tenancy.py +43 -0
  84. brain/graph_rag/themes.py +501 -0
  85. brain/graph_rag/weighting.py +202 -0
  86. brain/ingest/__init__.py +1926 -0
  87. brain/ingest/chunker.py +249 -0
  88. brain/ingest/docx.py +40 -0
  89. brain/ingest/gmail.py +621 -0
  90. brain/ingest/markdown.py +37 -0
  91. brain/ingest/pdf.py +61 -0
  92. brain/ingest/stdin.py +22 -0
  93. brain/ingest/sub_tokens.py +91 -0
  94. brain/ingest/text.py +16 -0
  95. brain/interactions.py +205 -0
  96. brain/maintenance.py +355 -0
  97. brain/mcp_server.py +3405 -0
  98. brain/migrations/001_init.sql +43 -0
  99. brain/migrations/002_qwen3_embedding.sql +17 -0
  100. brain/migrations/003_vault_model.sql +41 -0
  101. brain/migrations/004_relax_content_hash_uniqueness.sql +18 -0
  102. brain/migrations/005_derived_links.sql +67 -0
  103. brain/migrations/006_dedup_file_by_source_path.sql +25 -0
  104. brain/migrations/007_email_thread_and_draft.sql +15 -0
  105. brain/migrations/008_gmail_thread_unique.sql +11 -0
  106. brain/migrations/009_chunks_weighted_tsv.sql +28 -0
  107. brain/migrations/010_interactions.sql +30 -0
  108. brain/migrations/011_documents_summary.sql +23 -0
  109. brain/migrations/012_graphrag.sql +171 -0
  110. brain/migrations/013_graphrag_communities.sql +125 -0
  111. brain/migrations/014_graphrag_community_summary_hash.sql +33 -0
  112. brain/migrations/015_interactions_graph_targets.sql +89 -0
  113. brain/migrations/016_index_hygiene.sql +61 -0
  114. brain/migrations/017_elicit.sql +30 -0
  115. brain/migrations/018_review_gap_signal_kinds.sql +40 -0
  116. brain/migrations/019_search_queries.sql +35 -0
  117. brain/migrations/020_link_suggestions.sql +40 -0
  118. brain/migrations/021_timeline_doc_date.sql +34 -0
  119. brain/migrations/022_link_suggestions_undirected.sql +84 -0
  120. brain/migrations/023_search_queries_fts_count.sql +28 -0
  121. brain/quartz_overrides/__init__.py +8 -0
  122. brain/quartz_overrides/quartz/bootstrap-cli.mjs +65 -0
  123. brain/quartz_overrides/quartz/build.ts +568 -0
  124. brain/quartz_overrides/quartz/cli/args.js +152 -0
  125. brain/quartz_overrides/quartz/cli/build_partial_handler.js +544 -0
  126. brain/quartz_overrides/quartz/cli/handlers.js +636 -0
  127. brain/quartz_overrides/quartz/components/CommandPalette.tsx +172 -0
  128. brain/quartz_overrides/quartz/components/Explorer.tsx +198 -0
  129. brain/quartz_overrides/quartz/components/Footer.tsx +27 -0
  130. brain/quartz_overrides/quartz/components/Graph.tsx +468 -0
  131. brain/quartz_overrides/quartz/components/PageTitle.tsx +72 -0
  132. brain/quartz_overrides/quartz/components/RelatedDocs.tsx +38 -0
  133. brain/quartz_overrides/quartz/components/Search.tsx +161 -0
  134. brain/quartz_overrides/quartz/components/SummaryLede.tsx +72 -0
  135. brain/quartz_overrides/quartz/components/index.ts +92 -0
  136. brain/quartz_overrides/quartz/components/pages/TagContent.tsx +272 -0
  137. brain/quartz_overrides/quartz/components/scripts/commandPalette.inline.ts +665 -0
  138. brain/quartz_overrides/quartz/components/scripts/explorer.inline.ts +768 -0
  139. brain/quartz_overrides/quartz/components/scripts/graph.inline.ts +2302 -0
  140. brain/quartz_overrides/quartz/components/scripts/relatedDocs.inline.ts +163 -0
  141. brain/quartz_overrides/quartz/components/scripts/search.inline.ts +1011 -0
  142. brain/quartz_overrides/quartz/plugins/emitters/contentIndex.ts +546 -0
  143. brain/quartz_overrides/quartz/plugins/transformers/codeCopy.ts +94 -0
  144. brain/quartz_overrides/quartz/plugins/transformers/derivedFenceMark.ts +302 -0
  145. brain/quartz_overrides/quartz/plugins/transformers/emailThread.ts +148 -0
  146. brain/quartz_overrides/quartz/plugins/transformers/emptyDoorFilter.ts +213 -0
  147. brain/quartz_overrides/quartz/plugins/transformers/index.ts +114 -0
  148. brain/quartz_overrides/quartz/plugins/transformers/linkKindMark.ts +205 -0
  149. brain/quartz_overrides/quartz/plugins/transformers/linkSourceTag.ts +104 -0
  150. brain/quartz_overrides/quartz/plugins/transformers/relativeDate.ts +100 -0
  151. brain/quartz_overrides/quartz/plugins/transformers/reloadSignal.ts +131 -0
  152. brain/quartz_overrides/quartz/processors/parse.ts +371 -0
  153. brain/quartz_overrides/quartz/processors/parser_cache.ts +78 -0
  154. brain/quartz_overrides/quartz/static/brain-logo-dark.png +0 -0
  155. brain/quartz_overrides/quartz/static/brain-logo-light.png +0 -0
  156. brain/quartz_overrides/quartz/static/codeCopy.js +196 -0
  157. brain/quartz_overrides/quartz/static/emailThread.js +334 -0
  158. brain/quartz_overrides/quartz/static/favicon.ico +0 -0
  159. brain/quartz_overrides/quartz/static/icon.png +0 -0
  160. brain/quartz_overrides/quartz/static/linkSourceTag.js +104 -0
  161. brain/quartz_overrides/quartz/static/relativeDate.js +142 -0
  162. brain/quartz_overrides/quartz/static/reload.js +168 -0
  163. brain/quartz_overrides/quartz/styles/brain/_article.scss +252 -0
  164. brain/quartz_overrides/quartz/styles/brain/_atmosphere.scss +113 -0
  165. brain/quartz_overrides/quartz/styles/brain/_callouts.scss +180 -0
  166. brain/quartz_overrides/quartz/styles/brain/_cmdk.scss +7 -0
  167. brain/quartz_overrides/quartz/styles/brain/_code.scss +208 -0
  168. brain/quartz_overrides/quartz/styles/brain/_command_palette.scss +369 -0
  169. brain/quartz_overrides/quartz/styles/brain/_email_thread.scss +228 -0
  170. brain/quartz_overrides/quartz/styles/brain/_explorer.scss +142 -0
  171. brain/quartz_overrides/quartz/styles/brain/_home.scss +182 -0
  172. brain/quartz_overrides/quartz/styles/brain/_links.scss +322 -0
  173. brain/quartz_overrides/quartz/styles/brain/_marginalia.scss +117 -0
  174. brain/quartz_overrides/quartz/styles/brain/_motion.scss +175 -0
  175. brain/quartz_overrides/quartz/styles/brain/_people_hub.scss +100 -0
  176. brain/quartz_overrides/quartz/styles/brain/_related_docs.scss +137 -0
  177. brain/quartz_overrides/quartz/styles/brain/_search.scss +252 -0
  178. brain/quartz_overrides/quartz/styles/brain/_sidebar.scss +468 -0
  179. brain/quartz_overrides/quartz/styles/brain/_summary_lede.scss +56 -0
  180. brain/quartz_overrides/quartz/styles/brain/_surface.scss +43 -0
  181. brain/quartz_overrides/quartz/styles/brain/_tag_content.scss +118 -0
  182. brain/quartz_overrides/quartz/styles/brain/_tokens.scss +197 -0
  183. brain/quartz_overrides/quartz/styles/brain/_typography.scss +92 -0
  184. brain/quartz_overrides/quartz/styles/custom.scss +89 -0
  185. brain/quartz_overrides/quartz/styles/graph.scss +505 -0
  186. brain/quartz_overrides/quartz/util/ctx.ts +92 -0
  187. brain/quartz_overrides/quartz/util/fastpath_manifest.ts +608 -0
  188. brain/quartz_overrides/quartz/util/path.ts +358 -0
  189. brain/quartz_overrides/quartz/util/sourceIcons.ts +55 -0
  190. brain/quartz_overrides/quartz.config.ts +270 -0
  191. brain/quartz_overrides/quartz.layout.ts +314 -0
  192. brain/queries.py +1188 -0
  193. brain/rank_fusion.py +8 -0
  194. brain/resurface.py +210 -0
  195. brain/review/__init__.py +26 -0
  196. brain/review/emit.py +27 -0
  197. brain/review/queries.py +436 -0
  198. brain/review/render.py +196 -0
  199. brain/review/scans.py +355 -0
  200. brain/review/weekly.py +413 -0
  201. brain/search.py +704 -0
  202. brain/set_similarity.py +15 -0
  203. brain/setup.py +1205 -0
  204. brain/tags.py +56 -0
  205. brain/templates/Caddyfile.j2 +9 -0
  206. brain/templates/__init__.py +1 -0
  207. brain/templates/bin/__init__.py +1 -0
  208. brain/templates/bin/_brain-brief-fg.sh +25 -0
  209. brain/templates/bin/_brain-build-fg.sh +53 -0
  210. brain/templates/bin/_brain-watcher-fg.sh +65 -0
  211. brain/templates/bin/brain-down.sh +89 -0
  212. brain/templates/bin/brain-status.sh +83 -0
  213. brain/templates/bin/brain-up.sh +221 -0
  214. brain/templates/docker/age/Dockerfile +79 -0
  215. brain/templates/docker-compose.stock.yml.j2 +26 -0
  216. brain/templates/docker-compose.yml.j2 +34 -0
  217. brain/templates/env.example +190 -0
  218. brain/templates/launchd/__init__.py +1 -0
  219. brain/templates/launchd/com.brain.brief.plist.j2 +45 -0
  220. brain/templates/launchd/com.brain.build.plist.j2 +46 -0
  221. brain/templates/launchd/com.brain.watcher.plist.j2 +46 -0
  222. brain/templates/skill/SKILL.md +63 -0
  223. brain/templates/skill/__init__.py +1 -0
  224. brain/timeline.py +834 -0
  225. brain/todo.py +124 -0
  226. brain/uninstall.py +185 -0
  227. brain/vault/__init__.py +115 -0
  228. brain/vault/_atomic.py +25 -0
  229. brain/vault/daily_index.py +228 -0
  230. brain/vault/derived_links/__init__.py +50 -0
  231. brain/vault/derived_links/directory.py +683 -0
  232. brain/vault/derived_links/fence.py +408 -0
  233. brain/vault/derived_links/gws.py +64 -0
  234. brain/vault/derived_links/participants.py +143 -0
  235. brain/vault/derived_links/pass_runner.py +362 -0
  236. brain/vault/derived_links/rules.py +137 -0
  237. brain/vault/export.py +683 -0
  238. brain/vault/frontmatter.py +165 -0
  239. brain/vault/graph.py +620 -0
  240. brain/vault/graph_format.py +388 -0
  241. brain/vault/link_rewrite.py +235 -0
  242. brain/vault/links.py +260 -0
  243. brain/vault/note_builder.py +211 -0
  244. brain/vault/paths.py +55 -0
  245. brain/vault/quartz_overlay.py +236 -0
  246. brain/vault/rename.py +591 -0
  247. brain/vault/resolver.py +304 -0
  248. brain/vault/slug.py +127 -0
  249. brain/vault/sync.py +1513 -0
  250. brain/vault/sync_summaries.py +264 -0
  251. brain/vault/templates.py +145 -0
  252. brain/vault/watch.py +1052 -0
  253. brain/wiki/__init__.py +6 -0
  254. brain/wiki/_github_slugger.py +76 -0
  255. brain/wiki/_person_name.py +314 -0
  256. brain/wiki/build_homepage.py +541 -0
  257. brain/wiki/build_partial.py +273 -0
  258. brain/wiki/build_people.py +934 -0
  259. brain/wiki/build_related.py +758 -0
  260. brain/wiki/build_swap.py +585 -0
  261. brain/wiki/build_watcher.py +975 -0
  262. brain/wiki/edit_classifier.py +215 -0
  263. brain/wiki/errors.py +10 -0
  264. brain/wiki/fastpath_manifest.py +475 -0
  265. brain/wiki/fastpath_state.py +174 -0
  266. brain/wiki/install.py +296 -0
  267. brain/wiki/slug.py +111 -0
  268. secondbrain_py-0.2.1.dist-info/METADATA +195 -0
  269. secondbrain_py-0.2.1.dist-info/RECORD +273 -0
  270. secondbrain_py-0.2.1.dist-info/WHEEL +5 -0
  271. secondbrain_py-0.2.1.dist-info/entry_points.txt +11 -0
  272. secondbrain_py-0.2.1.dist-info/licenses/LICENSE +21 -0
  273. secondbrain_py-0.2.1.dist-info/top_level.txt +1 -0
@@ -0,0 +1,165 @@
1
+ """YAML frontmatter writer + reader for vault files."""
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+ import hashlib
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+ from datetime import UTC, datetime
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+ from pathlib import Path
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+ from typing import Any
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+
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+ import yaml
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+
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+ from ..tags import normalize_tags
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+ from ._atomic import atomic_write_text
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+ from .derived_links.fence import strip_fence
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+
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+ _FENCE = "---"
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+
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+
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+ def dump_frontmatter(fields: dict[str, Any], body: str) -> str:
17
+ """Serialize a vault file: YAML frontmatter + a single blank line + body.
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+
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+ Field ordering is preserved verbatim from ``fields`` (callers control the
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+ canonical order; this is what makes export output stable across runs).
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+ Output uses block style with Unicode preserved so titles like
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+ ``"person-x Q1 réview"`` round-trip cleanly.
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+
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+ The body is written verbatim with a single newline separator after the
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+ closing ``---`` fence; callers are responsible for any trailing newline
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+ on the body itself.
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+ """
28
+ yaml_body = yaml.safe_dump(
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+ fields,
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+ default_flow_style=False,
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+ sort_keys=False,
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+ allow_unicode=True,
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+ )
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+ return f"{_FENCE}\n{yaml_body}{_FENCE}\n\n{body}"
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+
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+
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+ def parse_frontmatter(text: str) -> tuple[dict[str, Any], str]:
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+ """Split a vault file's text into ``(frontmatter_dict, body)``.
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+
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+ A vault file *must* begin with ``---``; if not, returns ``({}, text)`` and
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+ treats the whole input as body. Inside the fences the YAML is parsed in
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+ safe mode (no arbitrary Python object construction). Returns the parsed
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+ YAML mapping (empty dict if YAML loads to ``None``) and everything after
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+ the closing fence, with the leading blank line stripped if present.
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+
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+ Raises :class:`yaml.YAMLError` for malformed YAML so callers can decide
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+ whether to skip + warn or abort the run.
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+ """
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+ lines = text.splitlines(keepends=True)
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+ if not lines or lines[0].rstrip("\r\n") != _FENCE:
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+ return {}, text
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+ # Find the closing ``---`` — second fence on its own line.
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+ for idx in range(1, len(lines)):
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+ if lines[idx].rstrip("\r\n") == _FENCE:
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+ yaml_text = "".join(lines[1:idx])
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+ body_text = "".join(lines[idx + 1 :])
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+ # The writer adds an empty separator line after the closing fence;
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+ # peel exactly one of those off so re-parses see the same body
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+ # the caller wrote.
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+ if body_text.startswith("\n"):
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+ body_text = body_text[1:]
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+ elif body_text.startswith("\r\n"):
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+ body_text = body_text[2:]
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+ parsed = yaml.safe_load(yaml_text) if yaml_text.strip() else {}
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+ if parsed is None:
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+ parsed = {}
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+ if not isinstance(parsed, dict):
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+ # Frontmatter is contractually a mapping; anything else (a
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+ # bare list, scalar, etc.) is corrupt.
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+ raise ValueError(
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+ "frontmatter must be a YAML mapping; "
72
+ f"got {type(parsed).__name__}"
73
+ )
74
+ return parsed, body_text
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+ # No closing fence — treat the whole file as body.
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+ return {}, text
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+
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+
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+ def body_hash(text: str) -> str:
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+ """Return SHA-256 of the body of a vault file (frontmatter + fence stripped).
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+
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+ The hash is what populates ``documents.content_hash`` for vault-tier
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+ rows. ``brain vault sync`` uses it to detect "real" content changes and
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+ skip a re-embed when only the frontmatter shifted (e.g. tag tweaks,
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+ ``updated:`` timestamp bumps).
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+
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+ Normalizations before hashing — all chosen to preserve hash stability
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+ across editors and platforms:
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+
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+ - The leading ``---\\n…\\n---\\n`` block (if present) is stripped via
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+ :func:`parse_frontmatter`. Inputs with no frontmatter hash the entire
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+ text.
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+ - The auto-generated derived-edges fence (everything between
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+ ``<!-- BRAIN_DERIVED_START -->`` and ``<!-- BRAIN_DERIVED_END -->``)
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+ is stripped via :func:`brain.vault.derived_links.fence.strip_fence`.
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+ The fence is recomputed every relink from ``derived_links`` rows; its
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+ content is therefore not authored body and must not influence the
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+ hash, otherwise every relink would trigger a re-embed cascade.
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+ - CRLF line endings collapse to LF so a Windows-saved copy and the same
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+ content on macOS produce the same hash.
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+ - Leading/trailing whitespace is stripped — the writer's trailing
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+ newline is not part of the canonical content. (Editors that append a
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+ trailing newline don't trigger spurious updates.)
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+
105
+ The hash matches the value the export module would write into the same
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+ document's ``content_hash`` column, which is what makes the
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+ export → sync round-trip a no-op.
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+ """
109
+ # ``parse_frontmatter`` raises on malformed YAML — callers (the sync
110
+ # engine) catch that separately and record an error. For the hash itself
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+ # we fall back to hashing the raw text when the file has no frontmatter
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+ # at all, but propagate yaml errors upward.
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+ _, body = parse_frontmatter(text)
114
+ fence_stripped = strip_fence(body)
115
+ normalized = fence_stripped.replace("\r\n", "\n").replace("\r", "\n").strip()
116
+ return hashlib.sha256(normalized.encode("utf-8")).hexdigest()
117
+
118
+
119
+ def rewrite_tags(path: Path, new_tags: list[str]) -> bool:
120
+ """Rewrite a vault file's frontmatter ``tags:`` field to ``new_tags``.
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+
122
+ Returns ``True`` if the file changed, ``False`` if it was already in
123
+ sync — calling this with the same ``new_tags`` twice in a row is a
124
+ guaranteed no-op on the second call (no rewrite, no ``updated:`` bump,
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+ no mtime change). That idempotency is what lets ``brain tag`` and
126
+ ``brain backfill normalize-tags`` run repeatedly without churning the
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+ vault's git history.
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+
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+ Behavior:
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+
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+ - ``new_tags`` is passed through :func:`brain.tags.normalize_tags`
132
+ before the comparison, so callers passing mixed-case or duplicate
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+ input get the canonical form on disk and a re-call with the
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+ already-canonical form remains idempotent.
135
+ - All other frontmatter keys and their order are preserved (the dict
136
+ is mutated in place; :func:`dump_frontmatter` uses ``sort_keys=False``).
137
+ - A missing ``tags:`` key and an empty ``tags: []`` list are both
138
+ treated as "set fresh" — passing a non-empty ``new_tags`` triggers
139
+ a write in either case.
140
+ - On any change, ``updated:`` is bumped to the current UTC timestamp
141
+ (mirrors :func:`brain.vault.rename._rewrite_source_frontmatter`).
142
+ The body is untouched, so ``body_hash`` is stable and the next
143
+ ``brain vault sync`` skips re-embedding.
144
+ - The disk write goes through :func:`brain.vault._atomic.atomic_write_text`
145
+ so a partial write can never leave a half-rewritten frontmatter on
146
+ disk.
147
+
148
+ Raises:
149
+ FileNotFoundError: if ``path`` does not exist.
150
+ yaml.YAMLError: propagated from :func:`parse_frontmatter` if the
151
+ existing frontmatter is unparseable.
152
+ ValueError: propagated from :func:`parse_frontmatter` if the
153
+ frontmatter is structurally invalid (e.g. a YAML list at the
154
+ top level instead of a mapping).
155
+ """
156
+ text = path.read_text(encoding="utf-8")
157
+ fields, body = parse_frontmatter(text)
158
+ current_tags = list(fields.get("tags") or [])
159
+ desired_tags = normalize_tags(new_tags)
160
+ if current_tags == desired_tags:
161
+ return False
162
+ fields["tags"] = desired_tags
163
+ fields["updated"] = datetime.now(UTC).isoformat()
164
+ atomic_write_text(path, dump_frontmatter(fields, body))
165
+ return True