seabirdfilehandler 0.7.5__py3-none-any.whl → 0.7.7__py3-none-any.whl

seabirdfilehandler/bottlefile.py

@@ -1,9 +1,11 @@
+import logging
+from datetime import datetime, time
 from pathlib import Path
 from typing import Union
-from datetime import datetime, time
-import pandas as pd
+
 import numpy as np
-import logging
+import pandas as pd
+
 from seabirdfilehandler import DataFile
 
 logger = logging.getLogger(__name__)

seabirdfilehandler/bottlelogfile.py

@@ -1,7 +1,9 @@
-from datetime import datetime
-import re
 import logging
+import re
+from datetime import datetime
+
 import pandas as pd
+
 from seabirdfilehandler import DataFile
 
 logger = logging.getLogger(__name__)

seabirdfilehandler/cnvfile.py

@@ -1,9 +1,11 @@
-from pathlib import Path
+import logging
 from datetime import datetime, timedelta
-import pandas as pd
+from pathlib import Path
+
 import numpy as np
-import logging
-from seabirdfilehandler import DataFile, Parameters, CnvProcessingSteps
+import pandas as pd
+
+from seabirdfilehandler import CnvProcessingSteps, DataFile, Parameters
 
 logger = logging.getLogger(__name__)
 

seabirdfilehandler/datafiles.py

@@ -1,8 +1,9 @@
+import logging
 from pathlib import Path
-import xmltodict
-import pandas as pd
+
 import numpy as np
-import logging
+import pandas as pd
+import xmltodict
 
 logger = logging.getLogger(__name__)
 

seabirdfilehandler/file_collection.py

@@ -1,15 +1,18 @@
 from __future__ import annotations
-from pathlib import Path
+
 import logging
+import warnings
 from collections import UserList
+from pathlib import Path
 from typing import Callable, Type
-import warnings
-import pandas as pd
+
 import numpy as np
+import pandas as pd
+
 from seabirdfilehandler import (
-    CnvFile,
     BottleFile,
     BottleLogFile,
+    CnvFile,
     DataFile,
     HexFile,
 )
@@ -157,10 +160,13 @@ class FileCollection(UserList):
         -------
         A list of all paths found.
         """
-        return sorted(
-            self.path_to_files.rglob(f"*{pattern}*{self.file_suffix}"),
-            key=sorting_key,
-        )
+        if self.path_to_files.is_file():
+            return [self.path_to_files]
+        else:
+            return sorted(
+                self.path_to_files.rglob(f"*{pattern}*{self.file_suffix}"),
+                key=sorting_key,
+            )
 
     def load_files(self, only_metadata: bool = False) -> list[DataFile]:
         """
@@ -304,10 +310,8 @@ class FileCollection(UserList):
         for parameter in df.columns:
             if parameter in ["datetime"]:
                 continue
-            try:
-                df[parameter] = df[parameter].astype("float")
-            finally:
-                continue
+            df[parameter] = df[parameter].astype("float")
+            continue
         return df
 
     def select_real_scan_data(self, df: pd.DataFrame) -> pd.DataFrame:

seabirdfilehandler/geomar_ctd_file_parser.py

@@ -1,4 +1,5 @@
 from pathlib import Path
+
 import pandas as pd
 
 

seabirdfilehandler/hexfile.py

@@ -1,4 +1,5 @@
 from pathlib import Path
+
 from seabirdfilehandler import DataFile, XMLCONFile
 
 

seabirdfilehandler/parameter.py

@@ -1,10 +1,12 @@
 from __future__ import annotations
-from typing import Tuple
+
+import logging
 import re
 from collections import UserDict
+from typing import Tuple
+
 import numpy as np
 import pandas as pd
-import logging
 
 logger = logging.getLogger(__name__)
 
@@ -153,10 +155,10 @@ class Parameters(UserDict):
         post = []
         for line in self.raw_metadata:
             if line.startswith("name"):
-                column_names.append(line.split("=")[1].strip())
+                column_names.append(line.split("=", 1)[1].strip())
             elif line.startswith("span"):
                 past_spans = True
-                column_value_spans.append(line.split("=")[1].strip())
+                column_value_spans.append(line.split("=", 1)[1].strip())
             else:
                 if not past_spans:
                     pre.append(line)
@@ -164,7 +166,7 @@ class Parameters(UserDict):
                     post.append(line)
         assert len(column_names) == len(column_value_spans)
         self.data_table_stats = {
-            line.split("=")[0].strip(): line.split("=")[1].strip()
+            line.split("=")[0].strip(): line.split("=", 1)[1].strip()
             for line in pre
         }
         self.data_table_names_and_spans = [
@@ -172,7 +174,7 @@ class Parameters(UserDict):
             for name, span in zip(column_names, column_value_spans)
         ]
         self.data_table_misc = {
-            line.split("=")[0].strip(): line.split("=")[1].strip()
+            line.split("=")[0].strip(): line.split("=", 1)[1].strip()
             for line in post
         }
 

seabirdfilehandler/processing_steps.py

@@ -1,6 +1,7 @@
 from __future__ import annotations
-from collections import UserList
+
 import copy
+from collections import UserList
 
 
 class CnvProcessingSteps(UserList):
@@ -149,8 +150,7 @@ class CnvProcessingSteps(UserList):
             pass
         else:
             dictionary[key.strip()] = value.strip()
-        finally:
-            return dictionary
+        return dictionary
 
     def get_step(self, step: str) -> ProcessingStep | None:
         """

seabirdfilehandler/xmlfiles.py

@@ -1,7 +1,8 @@
-from pathlib import Path
-from collections import UserDict
-import xml.etree.ElementTree as ET
 import json
+import xml.etree.ElementTree as ET
+from collections import UserDict
+from pathlib import Path
+
 import xmltodict
 
 from seabirdfilehandler.utils import UnexpectedFileFormat

{seabirdfilehandler-0.7.5.dist-info → seabirdfilehandler-0.7.7.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: seabirdfilehandler
-Version: 0.7.5
+Version: 0.7.7
 Summary: Library of parsers to interact with SeaBird CTD files.
 License-File: LICENSE
 Keywords: CTD,parser,seabird,data
@@ -15,7 +15,19 @@ Classifier: Topic :: Scientific/Engineering :: Oceanography
 Classifier: Programming Language :: Python :: 3 :: Only
 Classifier: Programming Language :: Python :: 3.12
 Classifier: Programming Language :: Python :: 3.13
+Classifier: Programming Language :: Python :: 3.14
+Provides-Extra: docs
+Provides-Extra: test
+Requires-Dist: myst-parser (>=4.0.1) ; extra == "docs"
 Requires-Dist: pandas (>=2.2.1)
+Requires-Dist: parameterized (>=0.9.0) ; extra == "test"
+Requires-Dist: pre-commit (>=3.6.2) ; extra == "docs"
+Requires-Dist: pre-commit (>=3.6.2) ; extra == "test"
+Requires-Dist: pyment (>=0.3.3) ; extra == "docs"
+Requires-Dist: pytest (>=8.3.0) ; extra == "test"
+Requires-Dist: sphinx (>=8.2.3) ; extra == "docs"
+Requires-Dist: sphinx-autodoc-typehints (>=1.24.1) ; extra == "docs"
+Requires-Dist: sphinx-rtd-theme (>=1.3.0) ; extra == "docs"
 Requires-Dist: xmltodict (>=0.13.0)
 Project-URL: Documentation, https://ctd-software.pages.io-warnemuende.de/seabirdfilehandler
 Project-URL: Homepage, https://ctd-software.pages.io-warnemuende.de/seabirdfilehandler

seabirdfilehandler-0.7.7.dist-info/RECORD

@@ -0,0 +1,16 @@
+seabirdfilehandler/__init__.py,sha256=PSokwgSgsmpFh-2Xv2T2d3yxmmahLnIq58WLZ51l86I,276
+seabirdfilehandler/bottlefile.py,sha256=iNhg3cBKmCXCOD5PHDlxCbjXfOWxPi___1SEco5ujl8,6048
+seabirdfilehandler/bottlelogfile.py,sha256=EqtoKSRKqU6jqk435JDBQlk_KijbYOF62wMPv25ccOo,4312
+seabirdfilehandler/cnvfile.py,sha256=opeJhHeKBs6mHsTM8s4tnWq67g2q3mn1imC6On2qX-c,10250
+seabirdfilehandler/datafiles.py,sha256=kw5umO0hhv3dQoW0oog48zKEKOm9qdcEkZdj8hWUwSc,9234
+seabirdfilehandler/file_collection.py,sha256=EPBTPQt3BVSKom0ooA1kEEpujOnqspWkZCSXSGHwgDg,16179
+seabirdfilehandler/geomar_ctd_file_parser.py,sha256=NI6Wjd5DL74N6R7IaqRFxh7no3jH6jQmnuv7I8U5zFs,2656
+seabirdfilehandler/hexfile.py,sha256=sx-OKc6GFsutchOMgxjspFcMntVMAj2nvpf4rmMZE5w,2145
+seabirdfilehandler/parameter.py,sha256=HJ-yV017ia3Wn_0vs5J7rnZVeCzEiVd-dhEQWLaqp9g,16086
+seabirdfilehandler/processing_steps.py,sha256=preEkfgDOR6shJOQiHfMZJ7MaJ71GmyPJ-0sN7bUt9s,7081
+seabirdfilehandler/utils.py,sha256=5KXdB8Hdv65dv5tPyXxNMct1mCEOyA3S8XP54AFAnx0,1745
+seabirdfilehandler/xmlfiles.py,sha256=sPHcz30MYCak3x2tXqtnPg4t1l9Gz5JhcbxACSPIxtU,5085
+seabirdfilehandler-0.7.7.dist-info/METADATA,sha256=17YhEZmcvcorNHou4iVVCYyUYGlU4t5S456x6nbb8QY,2921
+seabirdfilehandler-0.7.7.dist-info/WHEEL,sha256=zp0Cn7JsFoX2ATtOhtaFYIiE2rmFAD4OcMhtUki8W3U,88
+seabirdfilehandler-0.7.7.dist-info/licenses/LICENSE,sha256=Ifd1VPmYv32oJd2QVh3wIQP9X05vYJlcY6kONz360ws,34603
+seabirdfilehandler-0.7.7.dist-info/RECORD,,

{seabirdfilehandler-0.7.5.dist-info → seabirdfilehandler-0.7.7.dist-info}/WHEEL

@@ -1,4 +1,4 @@
 Wheel-Version: 1.0
-Generator: poetry-core 2.2.0
+Generator: poetry-core 2.2.1
 Root-Is-Purelib: true
 Tag: py3-none-any

seabirdfilehandler-0.7.5.dist-info/RECORD

@@ -1,16 +0,0 @@
-seabirdfilehandler/__init__.py,sha256=PSokwgSgsmpFh-2Xv2T2d3yxmmahLnIq58WLZ51l86I,276
-seabirdfilehandler/bottlefile.py,sha256=qCh506J3MWZXM11243aw_oJRocVB0ZIipXQLEgkD5M0,6046
-seabirdfilehandler/bottlelogfile.py,sha256=MtMmEebdAktO3mk6KbmJC7dfx9sRLbV5qqDQt2qtpJE,4310
-seabirdfilehandler/cnvfile.py,sha256=xCkU0N9WS2Lo3OPyo2YFl-D8qvLwIpjDDO3Rco__8Mg,10248
-seabirdfilehandler/datafiles.py,sha256=riSs_IG6qruJL_M92Ii4XqBpLp34U3pwg4yFQHchq7U,9233
-seabirdfilehandler/file_collection.py,sha256=oLdjS-Q4_33T0qo_SYxkqg2bsaeg4gLVKBkOPxoTXx4,16111
-seabirdfilehandler/geomar_ctd_file_parser.py,sha256=4eCnkE0mvPKC8Dic8sXP4xpfwnk3K2MQcGFBf6loT8k,2655
-seabirdfilehandler/hexfile.py,sha256=TBplwbWHrTuJzv2qlx6xYNtoX43I2YUabDmaGZuBEDQ,2144
-seabirdfilehandler/parameter.py,sha256=ovoYt9NjUhLudCywzgEBlnSHydgSVsueHcl45769LVg,16072
-seabirdfilehandler/processing_steps.py,sha256=5v6FV5zT7K6flbYLU31fyBRwPwQi4225se8i9WYUTQQ,7101
-seabirdfilehandler/utils.py,sha256=5KXdB8Hdv65dv5tPyXxNMct1mCEOyA3S8XP54AFAnx0,1745
-seabirdfilehandler/xmlfiles.py,sha256=XqqbVNjyINySoe2ZC_qJglkAqshavZxT2-jorDOSj7Y,5084
-seabirdfilehandler-0.7.5.dist-info/METADATA,sha256=hLyBlSy7XXyuTFkqrC58eXAOcIVI0cqGVlYGLGwBX1M,2329
-seabirdfilehandler-0.7.5.dist-info/WHEEL,sha256=M5asmiAlL6HEcOq52Yi5mmk9KmTVjY2RDPtO4p9DMrc,88
-seabirdfilehandler-0.7.5.dist-info/licenses/LICENSE,sha256=Ifd1VPmYv32oJd2QVh3wIQP9X05vYJlcY6kONz360ws,34603
-seabirdfilehandler-0.7.5.dist-info/RECORD,,