scout-browser 4.98.0__py3-none-any.whl → 4.99.0__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (54) hide show
  1. scout/adapter/mongo/institute.py +42 -55
  2. scout/adapter/mongo/variant.py +19 -15
  3. scout/adapter/mongo/variant_loader.py +11 -11
  4. scout/build/individual.py +2 -0
  5. scout/build/variant/variant.py +8 -0
  6. scout/commands/download/ensembl.py +18 -2
  7. scout/commands/update/individual.py +2 -0
  8. scout/commands/update/panelapp.py +15 -2
  9. scout/constants/__init__.py +6 -7
  10. scout/constants/clnsig.py +2 -0
  11. scout/constants/file_types.py +12 -0
  12. scout/constants/igv_tracks.py +8 -6
  13. scout/constants/panels.py +3 -0
  14. scout/constants/variant_tags.py +6 -6
  15. scout/demo/643594.config.yaml +1 -0
  16. scout/load/panelapp.py +11 -5
  17. scout/models/case/case_loading_models.py +4 -0
  18. scout/parse/variant/clnsig.py +38 -0
  19. scout/parse/variant/genotype.py +4 -10
  20. scout/parse/variant/models.py +5 -11
  21. scout/parse/variant/rank_score.py +5 -13
  22. scout/parse/variant/variant.py +90 -111
  23. scout/server/app.py +33 -22
  24. scout/server/blueprints/alignviewers/controllers.py +29 -10
  25. scout/server/blueprints/alignviewers/templates/alignviewers/igv_viewer.html +41 -11
  26. scout/server/blueprints/cases/templates/cases/utils.html +6 -6
  27. scout/server/blueprints/clinvar/controllers.py +29 -14
  28. scout/server/blueprints/clinvar/templates/clinvar/multistep_add_variant.html +13 -4
  29. scout/server/blueprints/clinvar/views.py +14 -2
  30. scout/server/blueprints/institutes/controllers.py +10 -2
  31. scout/server/blueprints/login/controllers.py +112 -12
  32. scout/server/blueprints/login/views.py +38 -60
  33. scout/server/blueprints/public/templates/public/index.html +5 -1
  34. scout/server/blueprints/variant/controllers.py +1 -1
  35. scout/server/blueprints/variant/templates/variant/acmg.html +6 -2
  36. scout/server/blueprints/variant/templates/variant/components.html +19 -0
  37. scout/server/blueprints/variant/templates/variant/utils.html +3 -3
  38. scout/server/blueprints/variants/controllers.py +10 -1
  39. scout/server/blueprints/variants/templates/variants/components.html +28 -0
  40. scout/server/blueprints/variants/templates/variants/mei-variants.html +8 -6
  41. scout/server/blueprints/variants/templates/variants/sv-variants.html +9 -7
  42. scout/server/blueprints/variants/templates/variants/utils.html +8 -12
  43. scout/server/blueprints/variants/templates/variants/variants.html +4 -25
  44. scout/server/config.py +8 -0
  45. scout/server/utils.py +22 -5
  46. scout/utils/acmg.py +25 -26
  47. scout/utils/ensembl_biomart_clients.py +1 -1
  48. scout/utils/ensembl_rest_clients.py +25 -32
  49. scout/utils/hgvs.py +1 -1
  50. {scout_browser-4.98.0.dist-info → scout_browser-4.99.0.dist-info}/METADATA +10 -14
  51. {scout_browser-4.98.0.dist-info → scout_browser-4.99.0.dist-info}/RECORD +54 -54
  52. {scout_browser-4.98.0.dist-info → scout_browser-4.99.0.dist-info}/WHEEL +0 -0
  53. {scout_browser-4.98.0.dist-info → scout_browser-4.99.0.dist-info}/entry_points.txt +0 -0
  54. {scout_browser-4.98.0.dist-info → scout_browser-4.99.0.dist-info}/licenses/LICENSE +0 -0
@@ -16,7 +16,7 @@ scout/adapter/mongo/filter.py,sha256=rIdjiDJCrNDeTNgssKm7n1HTxne72jvlX2I3FQjQGo8
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  scout/adapter/mongo/hgnc.py,sha256=P80WdIFkpFDeR6Pa0H-pgeScGrZdCviWVL4rqR5Aqvk,16547
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  scout/adapter/mongo/hpo.py,sha256=ps2Pix3sGeea7DenboZVP5j7Vh9WAgX3-sgpbAj0Eck,6871
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  scout/adapter/mongo/index.py,sha256=TZPVv6xBWsEtZpBUWp5uhjuPjQMfVss4lZZju49g1Lw,3577
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- scout/adapter/mongo/institute.py,sha256=X_lQHSqSfMvE4PUb-txLvdjWqwdkEcNwUAq_9p6ay8A,7112
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+ scout/adapter/mongo/institute.py,sha256=SaA1mRxIZHtMfriMnd0yKiup-xSAG5g0ry9Achra9Tk,6646
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  scout/adapter/mongo/managed_variant.py,sha256=mPbp64nMDwAij8zvBbFGjI3MLbk6CC-OO9RTwtEIi44,8451
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  scout/adapter/mongo/matchmaker.py,sha256=amTvFOlUbrt1RmecY_8hPY6bO3j79lc2UbmzlCQcRuk,6378
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  scout/adapter/mongo/omics_variant.py,sha256=rgfHZYElFDNeh9Atx-oNhS3PbKbiDWn4JABGPZ33Vzk,8024
@@ -26,16 +26,16 @@ scout/adapter/mongo/query.py,sha256=DqgpPGm9n3lmReHfVMGUNVCTvvMltRXSzaeYW5tDaXc,
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  scout/adapter/mongo/rank_model.py,sha256=wvDNI4OLf-f7ZYZ_Q_6qi0myxOJCNNJR_-2-_0u2K2M,5712
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  scout/adapter/mongo/transcript.py,sha256=3U1qtyxZ1DnrzdBJm_emJXISMYFKJuX_zAKynUt8NMY,7417
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  scout/adapter/mongo/user.py,sha256=QoQnRWqi_dV3ZwGzBonEU6Ap9TgMDf2x_C5UIqG0pa0,2569
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- scout/adapter/mongo/variant.py,sha256=r4CJ3yus3HKTdIHHKtrRitQkN3syuMy8pkWPgR7XyAc,35044
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+ scout/adapter/mongo/variant.py,sha256=qejO1Su7vR_6z94meEW9kt-MHQEQeAoFhBc98LUvrTE,35530
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  scout/adapter/mongo/variant_events.py,sha256=yNnMM58P1LbYFw73rWzti6l2zWa_G93ozUTbVkcz4_I,33475
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- scout/adapter/mongo/variant_loader.py,sha256=qay1v-LNYTAkOVeeKSuJhU6abYO_U26woAdvoyAgGsI,28205
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+ scout/adapter/mongo/variant_loader.py,sha256=H0khshP5i9od-UTPzlRejMoL_CNZlT8jXtqBZ_sWctc,28257
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  scout/build/__init__.py,sha256=GUWEaXTpwsJil_KtrXBQJpZIwCQFSgo8NlK49R9IkA8,521
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  scout/build/acmg.py,sha256=M21MrrP_dtEyOuu6t-jBDdaqYcHPMLcwJlt9fHG2ycE,1523
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  scout/build/case.py,sha256=LtYx6zQcCoGCss48qf7uluzTlXVH0Pl-WhqYzkbIcZ8,11510
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  scout/build/ccv.py,sha256=cfAWSQ5cSBWURkL9_fPm1Y5aRcTIDOE9ieSWaYLufB4,1660
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  scout/build/disease.py,sha256=Zew9AF_z1NbbKcO3uJZ2wgni501SkfnYRgnaCZ4m8FY,2020
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  scout/build/hpo.py,sha256=LJBCTq-x09D0CSKcUHB8a6ynuUrVh_7Ia0ooA1BxMys,1207
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- scout/build/individual.py,sha256=pLImS_cTrDSaSPlBT6sonGUZCeWUik3jni4X81CQfsE,5132
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+ scout/build/individual.py,sha256=6Lg3ty8gdEG2O9BioDk_Fd9mAXb9QgibSzB7IRLTPJk,5195
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  scout/build/institute.py,sha256=CZKn-cFbh0cWO2ySoRV_P1nYFizlyvu50LKrtAz-PLo,1330
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  scout/build/managed_variant.py,sha256=krcQBc4LLxlnUQwXuV2FxNLiSkMoIkLxQueYFl04Vyo,1666
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  scout/build/panel.py,sha256=smhtynG_ggNgUyuAGqg_-m1UMnBHhrk2ALutYoNTTec,4273
@@ -50,7 +50,7 @@ scout/build/variant/compound.py,sha256=tYikQ4PmgAH1_yrE9uYaUX4_EoAs_XEiT8JWAjrZu
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  scout/build/variant/gene.py,sha256=Fj_ouJtNAZOvxYVo9oVXaYJE5_zx-mJqL-uOARD4ku8,3857
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  scout/build/variant/genotype.py,sha256=QDTZWFB8ix9Zd1m9UPWgT008i6rC7gT-uFzRr9GniDU,1009
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  scout/build/variant/transcript.py,sha256=hf_led1kdT3hVEwtHdORhBSk6a6o_zEDJ0z4ZF8IlFA,1205
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- scout/build/variant/variant.py,sha256=1BcGarXmLm8mUVmhwBWRBx9tt7C4Rwb8qBJ7STnsAqE,18509
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+ scout/build/variant/variant.py,sha256=KHBf5dZt3i0tz8pN4Bujp7edI754cnb5jN4wcsTesVc,18740
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  scout/commands/__init__.py,sha256=VrenBj1daCAnIsBZtvdbv1SuxmODT_TTY8YcxWItrXE,22
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  scout/commands/base.py,sha256=WmUko96zsPbC3cUIezy0CAOOGKBFU-BoW-BPAhLORCE,4610
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  scout/commands/convert.py,sha256=T5dkFjRKSTf7dBS9uKIW4wEmdL13vKzKTLRy4nvf6Vg,1090
@@ -62,7 +62,7 @@ scout/commands/delete/__init__.py,sha256=6Z97FsWMqyKqF64Anl1zwljVNTfjJUCI7yylxIE
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  scout/commands/delete/delete_command.py,sha256=c-cWdtc0VCLVLL5hpMxSuyaBiYCppm403eRoLhD1SSo,14568
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  scout/commands/download/__init__.py,sha256=mfDzxqKzJ0LgfPBN_fehkdX5BPy1FJ3rauA3ORLIjCM,39
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  scout/commands/download/download_command.py,sha256=m5CKefst3qhs4urfNu1A2TERisUb_5WPn-wn9bGCDr0,736
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- scout/commands/download/ensembl.py,sha256=CsTMjYihBtXyfofNIQ2riL9UBzydDbqoNZ7jJVQ15ak,2112
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+ scout/commands/download/ensembl.py,sha256=Zr3seYt9DiadiJrGUTDcnuiopIO1PVFDDurP_sWg6Mg,2644
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  scout/commands/download/everything.py,sha256=KJ0xKeIx7Rtxv38XRE2RVYBTqec9UXh6LKrozj_6Mwo,1426
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  scout/commands/download/exac.py,sha256=Hy-RKnjlPRvvMgkExpyrxdjFXW_kPUvS012SyqYp41E,1052
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  scout/commands/download/hgnc.py,sha256=Htp0uOhHDAqSrfIG7xRg2WE8ZKO00chOwW1xqv-OzC8,890
@@ -103,11 +103,11 @@ scout/commands/update/compounds.py,sha256=vwCtb6045tGovKWHqY_uL8w1l9rZ_Hxlt0gUU0
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  scout/commands/update/disease.py,sha256=AajPLoEtd9YeU3jf7S7ZQRs3_o1H3GSxHsST_sVaIZQ,3846
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  scout/commands/update/genes.py,sha256=GhYIn2zWrAZMhdJjzzrpo8AquFqr7XOvosOk8lg4Zwk,6989
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  scout/commands/update/hpo.py,sha256=eyCuUlUwPmyP0oLh1olXhdqInlUXDdLe8ylgTlHWi-g,1339
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- scout/commands/update/individual.py,sha256=0xaqWeTWqs8wW3T2j-v3MNkVE4a1eY-NpF6NiazhN_Q,4080
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+ scout/commands/update/individual.py,sha256=s4HvDuAzjjs7geyUBmt8rSXpf69VWdxwK6xQj-p-oYQ,4159
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  scout/commands/update/institute.py,sha256=ms8mmTGfCXqxeh_vSB1cdNDGrdHoSSgh9ryhB5GrJQc,1727
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  scout/commands/update/omim.py,sha256=s39qterBGhtBfW7Uc-IJabni93PIhT8shqVbkmQBb9k,2309
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  scout/commands/update/panel.py,sha256=990shZ15k5pwHUkd767o8oQ5iqVIpgRA7N_9yv1_eqc,2912
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- scout/commands/update/panelapp.py,sha256=UZ-k0UpVTM-scSg_pZdih84ZbYdTBtllouM87iMDx_0,1460
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+ scout/commands/update/panelapp.py,sha256=lUDuN8iLPwUFFG_iY35L5gDEjrgsE22Eo_xB1Djj1_4,1922
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  scout/commands/update/phenotype_groups.py,sha256=Ll0COlEckn1Z7VAJbFbG2EZ5FKFVEcff0sWiUsx-D-g,1980
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  scout/commands/update/user.py,sha256=s5s7nh9UABBO9P6L11_j5tsi4iPxzieHw40yDhc4PWM,2497
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  scout/commands/view/__init__.py,sha256=ZtRW7UBNf1rPnlCslBVcmjafOPg9WTPpn4xxlAA0wMo,23
@@ -125,23 +125,23 @@ scout/commands/view/intervals.py,sha256=8Pofxy0DwL2Euh3SdnTLLWsU6DjLNOwIGdxeCS83
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  scout/commands/view/panels.py,sha256=a0fQcP9-SDPuRYV7aEgIGUCYaMN6V47h6finpcdoomU,1098
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  scout/commands/view/transcripts.py,sha256=59WyNNp7zHPJIz9QgzrkoeKaSXTtuLli0VuL8IidEmY,1277
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  scout/commands/view/users.py,sha256=MKlmhDYRM7Yf-Trmi1ijEuqsDIUn326bdFADyDs7XYg,832
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- scout/constants/__init__.py,sha256=QsXeGXaS58SpLCLxVvf1BxZB2YfPZWzI-7BmMyJ8hBw,5891
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+ scout/constants/__init__.py,sha256=omgOXsJ2oxjPdlQqy7teeEAsINaXH5jHTQZPG_B15p0,5918
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  scout/constants/acmg.py,sha256=N9X2sJLbK6g6tDPhW0gYQifImzaowb4F6jfTYUBr-Z0,18717
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  scout/constants/case_tags.py,sha256=O-BwEzU36MSpN7qqd-aSvoi4-VDRY8rM5hQ7Jg7DMgs,9447
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  scout/constants/ccv.py,sha256=YP82qWCrjv3JB8d2LkUdBlBZolk0uF3nhNmkNgmebiI,9734
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  scout/constants/clinvar.py,sha256=nr7KhwMIO_7taNQokRJlpgZfenMlKsdPIMpdOx3TwKY,5594
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- scout/constants/clnsig.py,sha256=TSeZjUno2jEvQTenrltZ900ZFYIRNoul_Wm2qRjvpPA,1493
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+ scout/constants/clnsig.py,sha256=anWIOuj_qLcDl4UsRQ50W6qlv7UaHTUbSdHOkAzL0No,1594
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  scout/constants/disease_parsing.py,sha256=M9_OgsN88oXwKH_XpxdDma0zuWPRoHFQjL19tzojBPo,686
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- scout/constants/file_types.py,sha256=DoXe34PJLYYHRH8-VqU1u1sd13lckl3nPckweXltKE4,2669
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+ scout/constants/file_types.py,sha256=9nHBnknssjdQnHm8jA8MoWAJq1shS4h5apyC9zwGCc0,2890
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  scout/constants/filters.py,sha256=ZgVGt6No5D7PiN1o1wWDm3E5SCRk7YLya87_4QtIMPs,979
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  scout/constants/gene_tags.py,sha256=yBrMu9qXyYaQ13l3XMakooyd2ZtPXm1XgpSSH_bC-5U,4513
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- scout/constants/igv_tracks.py,sha256=uh8x1EqkXXVEBEGPi34Dxr_qztooQhZ0ZNmt2vpxzDo,4474
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+ scout/constants/igv_tracks.py,sha256=chwGmDIu45lYWix4OdmjEilCxGFHGmkdCJ-MCkRMX4s,4601
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  scout/constants/indexes.py,sha256=mCj_ih9Sv7Qv4DrzLRH30EQZ-Tgyn_Sf6NYapCOlMOc,5793
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- scout/constants/panels.py,sha256=X38XGPlNgOGhXHt5mSpryOS7gMeP-tUD1t1WIT2G5wM,785
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+ scout/constants/panels.py,sha256=1N2Ys94IxoEWxySTJDW-rFJ55vtCkqnn6bRWjkw61J4,876
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  scout/constants/phenotype.py,sha256=MrbXirisR_7GPnxV3NOj3-BoM9CvtGgFZj7PfJu85RM,2331
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  scout/constants/query_terms.py,sha256=3t8JlqaM18-7t1Zd_dEv34hsIyxX_Yd6kjIbw5ZjjV8,1596
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  scout/constants/so_terms.py,sha256=aJcQv3wgpZylVhqSJH854WS8xSARDxWGnW6I5mG1egE,4321
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- scout/constants/variant_tags.py,sha256=LxE_jTF5hk9M-lU7nAl1mdhpctatYwO91BLfVgN3qCQ,17919
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+ scout/constants/variant_tags.py,sha256=NnpcJGRDycq3PIrDQsd57ynJ8NzmJETICBVjzGKZlSg,17907
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  scout/constants/variants_export.py,sha256=uQvFsbRMdbgl39HUdGWzFAEe1KOHp5OgvhjbGMD3O_Q,1969
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  scout/demo/643594.clinical.SV.vcf.gz,sha256=Y5CcTI7vJAS53ch8OHPR80X44rArHZoQeQZGl8AHmq0,11927
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@@ -157,7 +157,7 @@ scout/demo/643594.clinical.str.vcf.gz,sha256=ElvicUseKkN-DiZOQrFXstxy2jo9lhVMn58
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- scout/demo/643594.config.yaml,sha256=cSwqoVAdTEgz8MYpgLME0NjcyGqRV07Gk1ZJ6fRdfrs,5824
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+ scout/demo/643594.config.yaml,sha256=vHZjuZbIBluvuPeVK_nLJt63B8xVdgMlpMBoO8p3WS8,5825
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@@ -378,7 +378,7 @@ scout/load/hgnc_gene.py,sha256=GcSQ01CioYIshAzXAv4msIGDPjTjGBBPBnLX2GvaZJ4,4507
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- scout/load/panelapp.py,sha256=gE1WjT1XZQV_Pom15Fj1poYkYiQK75z_bBm9SN0d-Ow,5290
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+ scout/load/panelapp.py,sha256=b37hLLpUNhXPz5SOYnhnRhb1OmSX-z2k7FtKMm9pXE8,5319
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@@ -401,7 +401,7 @@ scout/models/phenotype_term.py,sha256=jY7dbfPzgE14M1gWqifm5YKkwMlrtfFa_WBHMT1_og
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  scout/models/case/__init__.py,sha256=Sqczn7Wm9KYZtPGAHCvwX_6j9vlaK-0myJtSDlS-448,121
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- scout/models/case/case_loading_models.py,sha256=LuzURd1TqYKsUaW-UZVenVdLEOGdzr-LQbDLRI_5dPs,21944
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+ scout/models/case/case_loading_models.py,sha256=yJBt_ea-4x7SYjRiSsZtSLRGv76B_t8Lg4K68e3-kTA,22108
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@@ -427,38 +427,38 @@ scout/parse/omics_variant/__init__.py,sha256=vq8Ew4_Xr2vPy_3Fg0eTpPWsQpWnUXYBhjR
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- scout/parse/variant/clnsig.py,sha256=dFIvV29cvMOFw7hSgbjBEXzWV5YVKpSGQqgLuHbMePk,5421
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+ scout/parse/variant/clnsig.py,sha256=ubF6ImtxtAtouwESQ-NhoCeE_9uVFT_UWKaE9BRhHgI,6773
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- scout/parse/variant/genotype.py,sha256=c53cRtC-9DH6kEb_F2n4fbXdKY3Zcq6srQC-2scqiaU,16577
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+ scout/parse/variant/genotype.py,sha256=mGgTFC6DrSEzYyAbbIfdUcnxUOxdfnpNAFzKazC4pJ0,16452
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- scout/parse/variant/models.py,sha256=NrqLXu7PxpIQ0NmjGRIEk4vS_y972VPiexLsZCZpOn0,507
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- scout/parse/variant/rank_score.py,sha256=ipFxCTsQHMqObUbzLJlDAKUb3_lk_sqEYzH52myZVVk,486
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+ scout/parse/variant/models.py,sha256=K9i3nSuW2rhEq6Y1fwullXOG7BaIodl0YEDXe2Jwszg,424
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+ scout/parse/variant/rank_score.py,sha256=da3LfTovbLyldGiD5sEvJ53jtwU6HrtQh-P7QdGMRwY,393
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- scout/parse/variant/variant.py,sha256=i7JwwpqO8tlJG7AXdyB4NQBusf8Rkja27gCVZkq-wYo,25026
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+ scout/parse/variant/variant.py,sha256=3K7OQ2OFvAbE7s5rD8178oUvHJJ2qIcn2NeBQ8o_i60,24768
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  scout/resources/__init__.py,sha256=i9UVG651subgmOZ-Gm-JKPsXBqr5-50QUDfSpbwmwIw,443
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  scout/server/__init__.py,sha256=iwhKnzeBJLKxpRVjvzwiRE63_zNpIBfaKLITauVph-0,24
450
- scout/server/app.py,sha256=eLSAglIu3N2zBxVMQaEsMlYV7enLDLulzq_Y3b-KQLk,11341
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+ scout/server/app.py,sha256=EzBmodU9u3GFh36LOt2VIxbDHCK7EN6dv0pTsWPa95k,11837
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  scout/server/auto.py,sha256=8B6GwfOaUChkTLuLgYQDFMWlxGuHkEegF1argH2G2Ik,401
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- scout/server/config.py,sha256=BFx6ix8D3KM90FqmaHLxv_feudO2kN2CkX1UWBGTjXE,5923
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+ scout/server/config.py,sha256=5EZ4F37p15tXght-hRa6d7ueX_68r4DXwjvw-mQiTzE,6252
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  scout/server/links.py,sha256=rJTHO4G40uLiWCtPr2n0Q0pBMtSOhjjh7F41jBoufM4,27656
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- scout/server/utils.py,sha256=qB_3GbmcSQ-2wjTBabd3R-1TS5NzrSSRxCm77dVqvSI,12765
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+ scout/server/utils.py,sha256=gg350xD-69px1mZD5BD8bBVVey3DU2Pg8TTAyW8S8QM,13452
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  scout/server/blueprints/__init__.py,sha256=iwhKnzeBJLKxpRVjvzwiRE63_zNpIBfaKLITauVph-0,24
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  scout/server/blueprints/alignviewers/__init__.py,sha256=XMVed2ekVUAvroqENDHSr2pwM8otqau8ZA-rbH1T2U8,59
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- scout/server/blueprints/alignviewers/controllers.py,sha256=cLYvNhVFOhbHgBW3bJZJhmU87vKdOtz0hvGQ1hz6zaY,14404
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+ scout/server/blueprints/alignviewers/controllers.py,sha256=9gv4hszxtXsvikJY69iMGNiUBSDGcXPg5Q83woheAjw,15252
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  scout/server/blueprints/alignviewers/partial.py,sha256=9hpI00yhvZZCcPVUHlVDp488r1j7vYU5YDXYA6OkWQM,2005
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  scout/server/blueprints/alignviewers/templates/alignviewers/igv_sashimi_viewer.html,sha256=37ArJCraTajqWlCvyQYVfSvWCg94pRDIMvf2Y7Oe_j4,5545
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- scout/server/blueprints/alignviewers/templates/alignviewers/igv_viewer.html,sha256=VRhPCt-0BuwOOkwi3tzrYNII6VPCyT0HYG6fuetBFV8,8729
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+ scout/server/blueprints/alignviewers/templates/alignviewers/igv_viewer.html,sha256=hn0f89IlESfs9aAdz_vuhi7Qpv71Ti-WDZ-4nAe27iY,10255
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  scout/server/blueprints/alignviewers/templates/alignviewers/utils.html,sha256=sPkIgivgYcXkESAbEODi2LeLtYyNWsUdd64xGsX8ejM,336
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  scout/server/blueprints/api/__init__.py,sha256=HR6HjS7ot1K_8Lt5eQdNT154z_FCdHGSigy8r2LpNCI,26
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  scout/server/blueprints/api/views.py,sha256=pbl78wfhrm1T8JmiJDYF3BbTbfFrlF-hQRbuv2GWI0s,3729
@@ -483,15 +483,15 @@ scout/server/blueprints/cases/templates/cases/individuals_table.html,sha256=KMWl
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  scout/server/blueprints/cases/templates/cases/institutes_sidebar.html,sha256=u0oPGHJ0ipZ1LkjHkbwlWfkUWc1h6XH1nh3tkbX17z0,4546
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  scout/server/blueprints/cases/templates/cases/matchmaker.html,sha256=kPYnmcZJ1gmx_guW52H7baT9Sw4WE0VJmLGF6N7Z3iA,13639
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  scout/server/blueprints/cases/templates/cases/phenotype.html,sha256=7vz5XPUExD6vc-wdijLKnPzaOFm9mQxOZ_ITAL3y7U8,16420
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- scout/server/blueprints/cases/templates/cases/utils.html,sha256=g72DMi01zpuOxQ8plf5oms8_BrlVfd86equS7E5LN-0,36061
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+ scout/server/blueprints/cases/templates/cases/utils.html,sha256=hovcovPsbE5npNKaEOAr829q-E9DHP0Fer8ifthtDEg,36061
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  scout/server/blueprints/clinvar/__init__.py,sha256=BV3aH2AbiA2WWrUEMbGd0H9MefFd2eTsRE9ShywbzpI,30
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- scout/server/blueprints/clinvar/controllers.py,sha256=CxGX12hnndqXbyLcv0KF0SBGIpUSRM50w4GYluuCtrs,24329
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+ scout/server/blueprints/clinvar/controllers.py,sha256=z2_x-rJD6CfOqHEbK6jk0H2TQT02xDjG5RnKOsE01tw,24906
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  scout/server/blueprints/clinvar/form.py,sha256=2h42YJzaOtsdEglxqt7F1i2ncjSU_IHNt-m4QOJytK4,5148
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- scout/server/blueprints/clinvar/views.py,sha256=nXZMPjldV_wuvj9k5_hsfkVGCvFlhT8fssS-tMlVXYk,5710
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+ scout/server/blueprints/clinvar/views.py,sha256=p4R31xEBqvyw9bbwrB_rRe4UqIDc3HPTvhiVhZ1Z_lA,5760
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  scout/server/blueprints/clinvar/static/form_style.css,sha256=Tro2w0Su9st2ZRpt8PjF7qXYet-0n6Eyol4oh94JafU,4073
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  scout/server/blueprints/clinvar/templates/clinvar/clinvar_howto.html,sha256=phFsRl6Hv94sy4GueBN0MXYbQsW6qmR1NoH-3Iwt2zs,4852
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  scout/server/blueprints/clinvar/templates/clinvar/clinvar_submissions.html,sha256=zJJehPFmxwL6tTChYQBvtOKn3Q2v6RD8pBLiJF6jHaQ,18095
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- scout/server/blueprints/clinvar/templates/clinvar/multistep_add_variant.html,sha256=arIh-qIaeoSz_hjEyAvtnMquhRQZ95OxW2k5xyzS3a8,32477
494
+ scout/server/blueprints/clinvar/templates/clinvar/multistep_add_variant.html,sha256=5F86LDpAuM0RbwT2Q1P9NaMFGcMkkwQrhw9iV0WmzFc,33135
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  scout/server/blueprints/dashboard/__init__.py,sha256=9YTjGeFexyEbl4P-gs7j8VEjyhnVwHZFfz57eTtod1M,69
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  scout/server/blueprints/dashboard/controllers.py,sha256=x6EWKROskF4iyZ5_hAgL7CWp1X3CXHp-7v0JVsDHKZU,9612
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  scout/server/blueprints/dashboard/forms.py,sha256=vbdkujKZxVjiZw2inNhysN3yYMPCdMPbqvKV88DamwI,501
@@ -511,7 +511,7 @@ scout/server/blueprints/genes/templates/genes/gene.html,sha256=a--c-IjzNKN_JW7z9
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  scout/server/blueprints/genes/templates/genes/genes.html,sha256=x6jXKijvuEX9GvIedHW4O_BerYXiWEmAdYT0HTiGnhI,1130
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  scout/server/blueprints/institutes/__init__.py,sha256=kGSyYrBC1QaEQBDdoMkMLfaowV7roaV5DowICi_0RSQ,65
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- scout/server/blueprints/institutes/controllers.py,sha256=BSAzBNc0-oULM8FpF2xWVSaIJNNGkVRqKPklePcYEbQ,34505
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+ scout/server/blueprints/institutes/controllers.py,sha256=0pCXP6RZx8W0Jyd4KrlSR4UpgYuTjdIB7GuomM7lUHc,34723
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  scout/server/blueprints/institutes/forms.py,sha256=uKyl1bfAFYB65P0DHMihBWhE9bvxNixAIkznuelpIBo,6810
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  scout/server/blueprints/institutes/views.py,sha256=PSpf82kW0EKZc24CPhBhuE-wXXGyIz-R6IJu7IM0IrM,9052
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  scout/server/blueprints/institutes/static/form_scripts.js,sha256=8Sn7omeXeeUbiXJPfT0Qb4CaBJ_KtZZWw7N2he7EDx0,747
@@ -529,9 +529,9 @@ scout/server/blueprints/institutes/templates/overview/users.html,sha256=6dkbDBNL
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  scout/server/blueprints/institutes/templates/overview/utils.html,sha256=zkoqVNdBaeUtGFQfCNb7Vo3GlOypjg42XS0GvHlih7o,34297
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  scout/server/blueprints/institutes/templates/overview/verified.html,sha256=qxZ8mIPX00ZXIy_5eLO2QmLrjJZrhw97kdXBZxpRj38,3363
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  scout/server/blueprints/login/__init__.py,sha256=uDzQjNNrMloZ4-i-1cEW7d59FZ--Xy89b-Xn5SvyC1U,52
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- scout/server/blueprints/login/controllers.py,sha256=bg0me00OvwYJiTm4dZnbl8eyRRRDquBMs5U7_YV4xWI,1883
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+ scout/server/blueprints/login/controllers.py,sha256=AWz48_-kdlhmVXIoXOHmzCySSKjUiPQy8KfKC_ei1So,5696
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  scout/server/blueprints/login/models.py,sha256=w0ELh33rX1zwEnzZE-nhaoB6Z1JfgWxzWJ43JFJJo4s,688
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- scout/server/blueprints/login/views.py,sha256=0fAH91TAeO9h_ufLiUXjtzh5G21ODqi_OOPErmAJSQ8,4437
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+ scout/server/blueprints/login/views.py,sha256=Yo2aTkOPt0s6qwnMDLL92OuskQmTGXhhwMFQV56Y4r0,3386
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  scout/server/blueprints/login/static/aspirant.svg,sha256=qMXSX7WzHCDrqcnn6_U_mpQolZc3LVChPsRISGVRO00,270226
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  scout/server/blueprints/login/static/commander.svg,sha256=qXfFTyAE0myoOxJ8d1xb138APPllUOYxXE1Dp66Bz0o,195476
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  scout/server/blueprints/login/static/commissioner.svg,sha256=kAMMtiUauuKKKwYYVhjI8BOjiFoVLZWtj3zcmdwbVzg,415421
@@ -605,42 +605,42 @@ scout/server/blueprints/public/static/ideograms/chromosome-9.png,sha256=FJFQT6T3
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  scout/server/blueprints/public/static/ideograms/chromosome-M.png,sha256=xY53NbeYm1vWNf4crp3NRePb7tJGQriXe80Re8PicUs,12698
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  scout/server/blueprints/public/static/ideograms/chromosome-X.png,sha256=Dj7npcW_hhB7_W5Un_Eg3VLUyyUGe0-ZU9HL3nwfbJ0,1646
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608
- scout/server/blueprints/public/templates/public/index.html,sha256=-c6-r2G6-cdE9PLV126V8zTwYmApI88UIQKWuVP6HP4,4268
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+ scout/server/blueprints/public/templates/public/index.html,sha256=o_1UIHGHLBVahVT3MkYo2M7Vfh6tcUnbCXxh2QZ3MiI,4485
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  scout/server/blueprints/variant/__init__.py,sha256=SlD8-Aoj9Jq9aVTJjtFfsu-0sUVfkzpiEXcH8z9q6dI,54
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- scout/server/blueprints/variant/controllers.py,sha256=5ElWo2PwAYTyUSa5v8Q1EdltbqS050CPfTLDPw3XGN0,30710
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+ scout/server/blueprints/variant/controllers.py,sha256=BgMsBxlyfb-Qpk_0D_TkkmKMoCr9vn9xSX-uQHywGLk,30715
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  scout/server/blueprints/variant/utils.py,sha256=AWbsGc2dIUBp-r0D_FYlZKxdF3Tr5SHNxL5pAlZeie0,25226
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  scout/server/blueprints/variant/views.py,sha256=82gYXNREV17l8XTWCaptrv5lDfJOG4kiqAaX5IN62Do,19000
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- scout/server/blueprints/variant/templates/variant/acmg.html,sha256=Fk4vL1Pu4G3wZsfiUO2jBlFLFoRgFAeqChlIyas5Bb4,8758
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+ scout/server/blueprints/variant/templates/variant/acmg.html,sha256=Nn05-W8iyeV39lE2eR4iKsYg9jhCTi7kjhypnNiLsYQ,9023
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  scout/server/blueprints/variant/templates/variant/buttons.html,sha256=4vlnvJKhr28qqzevlecAIvumvOgLZhGyPYQm68AnKzU,7608
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  scout/server/blueprints/variant/templates/variant/ccv.html,sha256=X33qKY1EvzoLldko1hK5tgE__xxNU54vq6fRzFew6Vc,8671
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- scout/server/blueprints/variant/templates/variant/components.html,sha256=sZNMtmofAmGJN2OKFm6njsAuI3mJLCiAJMhhALhUP7I,27395
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+ scout/server/blueprints/variant/templates/variant/components.html,sha256=dCUiGd55tRnipkWWVjx7dpsURZNiG-GcH2TqsTwg2UU,27935
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  scout/server/blueprints/variant/templates/variant/str-variant-reviewer.html,sha256=p0nWqo71GJ8ACLEzXuZbJAzDXoCHZLvH6f7yLi3JslI,2208
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  scout/server/blueprints/variant/templates/variant/tx_overview.html,sha256=EXLBDh_SgNVEO7MPMjlmfO6MDhtDcj0JyvZdRgxbwSM,6756
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- scout/server/blueprints/variant/templates/variant/utils.html,sha256=lF-w3400plEn0gVpHG-9k7N9L_p1U-PFGitcT_YlZw8,25414
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+ scout/server/blueprints/variant/templates/variant/utils.html,sha256=-RiLmTomOJR-NTNY7H_wGZsAAzXoGpnxM8mPJKwCodM,25434
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- scout/server/blueprints/variants/controllers.py,sha256=kXWFglWrvvQQGjNOA1Rk0TXLwdRw7CIqy2NsWPILQsQ,75297
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+ scout/server/blueprints/variants/controllers.py,sha256=Adz_chAuwPHNdpZpDc5oK3k8jJsaGlMXQVr44wi3RWo,75676
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- scout/server/blueprints/variants/templates/variants/components.html,sha256=pmp0-fMp8PTXeSbFC3L-iTGPRaCtPGjX4Hb1N4s_1uw,17459
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+ scout/server/blueprints/variants/templates/variants/components.html,sha256=Ir5yRLHBb1xRDCigxaBXfaAICiSwjEQNs8pzj0o2gUY,18751
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- scout/server/blueprints/variants/templates/variants/mei-variants.html,sha256=2Tb0vfzM--kJa5mVbT7L32h4E8nKYRSb245g6O5JIUU,5860
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+ scout/server/blueprints/variants/templates/variants/mei-variants.html,sha256=E5nkN7I5PtfizYKf3wuhm0xLf4rdgvDmC6EI2x1WQZA,6093
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  scout/server/blueprints/variants/templates/variants/str-variants.html,sha256=n424D8xV76bCKDSFzzIsWfFAoU2dAYE-PPZyTtQeMdM,10924
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- scout/server/blueprints/variants/templates/variants/sv-variants.html,sha256=fRDnB9wXago2OB2mthp0rD_Es4kxnj9YKRlOKCGVW3s,6407
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- scout/server/blueprints/variants/templates/variants/utils.html,sha256=Ni2E-TcyGeNfFN2v_JeiTHYu-0FPZdX-g4xpwPgKgCQ,51907
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- scout/server/blueprints/variants/templates/variants/variants.html,sha256=KnCcsA1VaRdsbRCCw9Rg0TJTUvq03X9S24QgCqVToUk,9328
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+ scout/server/blueprints/variants/templates/variants/sv-variants.html,sha256=-0eLlk1txdnPB5Y69sVxhL9ji9FDuUM8pXjMkR8jdGI,6703
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+ scout/server/blueprints/variants/templates/variants/utils.html,sha256=LfbWXF1A8iHKGwpkXFIzxvHlE3WahLxF6kSs050Sq2w,51741
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+ scout/server/blueprints/variants/templates/variants/variants.html,sha256=oqJdyiIVwhZKnOGDfx07dPlRduIUvN5r0JmmK4hYExQ,8450
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  scout/server/extensions/__init__.py,sha256=s6qkGSFNRi_tP7yoeoXB5UarvLHidaK1Yw2Pae7Py90,1366
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  scout/server/extensions/beacon_extension.py,sha256=W2dHjTWbWXLnQN3dCOzXlGX8VxSYejT_UUlEF-elh14,9901
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  scout/server/extensions/bionano_extension.py,sha256=pMpnK5IkS2nzv7QrSQnfv_xJPJPoQphMUhDGp1UAXco,7109
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  scout/update/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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  scout/update/panel.py,sha256=4z-vQ7GVIJXtlIub9pubFcQ-I9mLX5fRXKNPBdpuhJw,1649
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  scout/utils/__init__.py,sha256=DHCMH05dxkyD7m9QSs0WXsQQPgVRFQ9XvyNeNpHjjvg,74
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- scout/utils/acmg.py,sha256=b2WLE2-s0pijXWBdwfrGE3SFogYMDoeVVKQd9d7pBQA,11576
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+ scout/utils/acmg.py,sha256=1XQnZVsfYXOgR2uWo6B06iDs9apF85zrCQXsBDM6tb4,11559
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  scout/utils/algorithms.py,sha256=w--NauXbQohZis7obr39a8bS57C4NRelYXn79V7m1dU,800
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  scout/utils/convert.py,sha256=asrsis3zkt9jXzseRmCqSa4_t1UT73HPPQRW-DKDdqE,1794
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  scout/utils/coordinates.py,sha256=n8WUFn9zohXfjxgFGryyg6mzdl0zBG8uVCdyjhizSpM,609
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  scout/utils/date.py,sha256=GUALqEIgWtbopqC9wJnVKmVm5FRq111iz4RfojUIfG0,1334
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  scout/utils/dict_utils.py,sha256=nstAbMYQD2KNglY69FD0qSfxYM26eM4QDpp_AqHNQ1U,251
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- scout/utils/ensembl_biomart_clients.py,sha256=KjkSYI9cWdUm4tQAEx8frA4n0SaMJbv5QS-b69vYLGc,1212
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- scout/utils/ensembl_rest_clients.py,sha256=of6CXQHBnwH4ji5URAZcEqVTebxduLs13lBWv2QTIM4,3039
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+ scout/utils/ensembl_biomart_clients.py,sha256=G-dhfIywMphvJreBe_vFhUqRWOV-YaAt5sG1yR8qBeg,1206
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+ scout/utils/ensembl_rest_clients.py,sha256=CY2-oHP9WD0aSKXniuqr5Ch25ELXw_CsP6buQBBYssQ,2739
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  scout/utils/gene.py,sha256=uzIGrPBfOkhRGGR9iTSYa00w6PWijjpzSAWRo54wixM,1430
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  scout/utils/handle.py,sha256=tLjinHNLADa3IJSxMp_HJe9cbiMlPTsfky4hujplPqU,327
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- scout/utils/hgvs.py,sha256=P5i3fIK8WZZlUnjZ8XpMDUG5KDXRCDSOs55DfK5acsc,898
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+ scout/utils/hgvs.py,sha256=p4nqm1iiPftc2LHRHtzUEyUf1IyVjjaOQNafrQkaw0c,916
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  scout/utils/link.py,sha256=HpQvwu0hmuCrs7TcAExLmOzEGr3glWuu8iaW0ao5pEA,9011
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  scout/utils/md5.py,sha256=KkgdxOf7xbF9AF40ZjQKCgWaxFWJ9tp9RKjd8SU6IoA,649
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  scout/utils/scout_requests.py,sha256=4UWE4PdpUyJ9h6CtvdrD69tQDBDTZk318-v-xHnWbEs,12796
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  scout/utils/track_resources.py,sha256=eUjSEe-Ff8BIb4BHPC_COkJocQO2PaWueiPz1GAuiwY,2614
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- scout_browser-4.98.0.dist-info/METADATA,sha256=JcmCa4k92JT19ANVsNs2cPkJ8gB5_WrXfjAIYdOJlzc,15642
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- scout_browser-4.98.0.dist-info/WHEEL,sha256=qtCwoSJWgHk21S1Kb4ihdzI2rlJ1ZKaIurTj_ngOhyQ,87
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- scout_browser-4.98.0.dist-info/entry_points.txt,sha256=q_mxFwbMFTwXRDDIRVcqKram2ubMVmvs3CSNvZri1nY,45
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- scout_browser-4.98.0.dist-info/licenses/LICENSE,sha256=TM1Y9Cqbwk55JVfxD-_bpGLtZQAeN9RovQlqHK6eOTY,1485
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- scout_browser-4.98.0.dist-info/RECORD,,
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+ scout_browser-4.99.0.dist-info/METADATA,sha256=TunFqZwiWX8UD4kIdLTmnVvT9hlyL8nGOvJUcSV-Gps,15526
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+ scout_browser-4.99.0.dist-info/WHEEL,sha256=qtCwoSJWgHk21S1Kb4ihdzI2rlJ1ZKaIurTj_ngOhyQ,87
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+ scout_browser-4.99.0.dist-info/entry_points.txt,sha256=q_mxFwbMFTwXRDDIRVcqKram2ubMVmvs3CSNvZri1nY,45
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+ scout_browser-4.99.0.dist-info/licenses/LICENSE,sha256=TM1Y9Cqbwk55JVfxD-_bpGLtZQAeN9RovQlqHK6eOTY,1485
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+ scout_browser-4.99.0.dist-info/RECORD,,