scout-browser 4.95.0__py3-none-any.whl → 4.97.0__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (99) hide show
  1. scout/adapter/mongo/case.py +75 -70
  2. scout/adapter/mongo/filter.py +28 -11
  3. scout/adapter/mongo/institute.py +2 -0
  4. scout/adapter/mongo/omics_variant.py +20 -5
  5. scout/adapter/mongo/query.py +104 -95
  6. scout/adapter/mongo/variant.py +0 -5
  7. scout/adapter/mongo/variant_loader.py +10 -12
  8. scout/build/case.py +3 -1
  9. scout/build/individual.py +3 -11
  10. scout/commands/delete/delete_command.py +87 -49
  11. scout/commands/load/research.py +4 -4
  12. scout/commands/load/variants.py +25 -8
  13. scout/commands/setup/setup_scout.py +1 -1
  14. scout/commands/update/case.py +12 -0
  15. scout/commands/update/individual.py +1 -2
  16. scout/constants/__init__.py +7 -2
  17. scout/constants/acmg.py +25 -18
  18. scout/constants/file_types.py +68 -119
  19. scout/constants/filters.py +2 -1
  20. scout/constants/gene_tags.py +3 -3
  21. scout/constants/igv_tracks.py +7 -11
  22. scout/constants/query_terms.py +2 -2
  23. scout/demo/643594.config.yaml +6 -0
  24. scout/demo/643594.peddy.ped +1 -1
  25. scout/demo/643594.somalier.ancestry.tsv +4 -0
  26. scout/demo/643594.somalier.pairs.tsv +4 -0
  27. scout/demo/643594.somalier.samples.tsv +4 -0
  28. scout/demo/cancer.load_config.yaml +2 -3
  29. scout/demo/resources/__init__.py +1 -1
  30. scout/demo/resources/gnomad.v4.1.constraint_metrics_reduced.tsv +3755 -0
  31. scout/demo/rnafusion.load_config.yaml +1 -0
  32. scout/exceptions/database.py +1 -1
  33. scout/load/all.py +8 -16
  34. scout/models/case/case.py +1 -0
  35. scout/models/case/case_loading_models.py +15 -5
  36. scout/models/managed_variant.py +3 -3
  37. scout/models/omics_variant.py +3 -3
  38. scout/parse/case.py +113 -5
  39. scout/parse/pedqc.py +127 -0
  40. scout/parse/variant/frequency.py +9 -6
  41. scout/parse/variant/variant.py +71 -39
  42. scout/server/app.py +14 -0
  43. scout/server/blueprints/alignviewers/controllers.py +2 -0
  44. scout/server/blueprints/alignviewers/templates/alignviewers/igv_viewer.html +3 -0
  45. scout/server/blueprints/alignviewers/templates/alignviewers/utils.html +1 -1
  46. scout/server/blueprints/cases/controllers.py +25 -3
  47. scout/server/blueprints/cases/templates/cases/case.html +3 -0
  48. scout/server/blueprints/cases/templates/cases/case_report.html +28 -2
  49. scout/server/blueprints/cases/templates/cases/chanjo2_form.html +2 -2
  50. scout/server/blueprints/cases/templates/cases/collapsible_actionbar.html +12 -0
  51. scout/server/blueprints/cases/templates/cases/gene_panel.html +9 -3
  52. scout/server/blueprints/cases/templates/cases/individuals_table.html +4 -1
  53. scout/server/blueprints/cases/templates/cases/utils.html +23 -19
  54. scout/server/blueprints/cases/views.py +5 -9
  55. scout/server/blueprints/clinvar/controllers.py +12 -11
  56. scout/server/blueprints/clinvar/templates/clinvar/clinvar_submissions.html +10 -14
  57. scout/server/blueprints/clinvar/templates/clinvar/multistep_add_variant.html +15 -7
  58. scout/server/blueprints/clinvar/views.py +18 -31
  59. scout/server/blueprints/institutes/controllers.py +20 -1
  60. scout/server/blueprints/institutes/forms.py +5 -1
  61. scout/server/blueprints/institutes/templates/overview/institute_settings.html +7 -0
  62. scout/server/blueprints/institutes/templates/overview/utils.html +20 -1
  63. scout/server/blueprints/omics_variants/templates/omics_variants/outliers.html +9 -2
  64. scout/server/blueprints/omics_variants/views.py +8 -10
  65. scout/server/blueprints/variant/controllers.py +30 -1
  66. scout/server/blueprints/variant/templates/variant/cancer-variant.html +21 -5
  67. scout/server/blueprints/variant/templates/variant/components.html +26 -9
  68. scout/server/blueprints/variant/templates/variant/variant.html +4 -2
  69. scout/server/blueprints/variant/templates/variant/variant_details.html +1 -1
  70. scout/server/blueprints/variant/utils.py +2 -0
  71. scout/server/blueprints/variant/views.py +10 -3
  72. scout/server/blueprints/variants/controllers.py +29 -3
  73. scout/server/blueprints/variants/forms.py +37 -10
  74. scout/server/blueprints/variants/templates/variants/cancer-variants.html +5 -4
  75. scout/server/blueprints/variants/templates/variants/components.html +12 -10
  76. scout/server/blueprints/variants/templates/variants/str-variants.html +13 -9
  77. scout/server/blueprints/variants/templates/variants/utils.html +59 -36
  78. scout/server/blueprints/variants/views.py +45 -60
  79. scout/server/extensions/beacon_extension.py +1 -1
  80. scout/server/extensions/bionano_extension.py +5 -5
  81. scout/server/extensions/chanjo2_extension.py +40 -1
  82. scout/server/extensions/chanjo_extension.py +1 -1
  83. scout/server/extensions/clinvar_extension.py +56 -2
  84. scout/server/extensions/matchmaker_extension.py +1 -1
  85. scout/server/links.py +0 -14
  86. scout/server/static/bs_styles.css +2 -0
  87. scout/server/templates/layout.html +1 -0
  88. scout/server/utils.py +5 -0
  89. scout/utils/acmg.py +5 -5
  90. scout/utils/ensembl_biomart_clients.py +2 -11
  91. scout/utils/scout_requests.py +1 -1
  92. {scout_browser-4.95.0.dist-info → scout_browser-4.97.0.dist-info}/METADATA +1 -1
  93. {scout_browser-4.95.0.dist-info → scout_browser-4.97.0.dist-info}/RECORD +96 -94
  94. scout/demo/resources/gnomad.v4.0.constraint_metrics_reduced.tsv +0 -3755
  95. scout/parse/peddy.py +0 -149
  96. scout/utils/sort.py +0 -21
  97. {scout_browser-4.95.0.dist-info → scout_browser-4.97.0.dist-info}/WHEEL +0 -0
  98. {scout_browser-4.95.0.dist-info → scout_browser-4.97.0.dist-info}/entry_points.txt +0 -0
  99. {scout_browser-4.95.0.dist-info → scout_browser-4.97.0.dist-info}/licenses/LICENSE +0 -0
@@ -4,7 +4,7 @@ scout/adapter/client.py,sha256=IuajRsEwTG41ZP14X09Q1Cj94zIgmIvUtlXfcAFn0EA,1513
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  scout/adapter/mongo/__init__.py,sha256=NdHYCUXWUAuX5cUS3-6HCws2hW9uoGep8i0SC-oJd3k,31
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  scout/adapter/mongo/acmg.py,sha256=v2Zuw-6APVmcnBnNXa18WJEu2vj5GUhZNiKMkruJsBI,4170
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  scout/adapter/mongo/base.py,sha256=iIa2AjGNztKHcZzolY0T6r7Oh0guj6R1putztp4OTNY,4427
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- scout/adapter/mongo/case.py,sha256=aHHCOeB1wjEX98HKBpDFWC0zZ149Orn93XkW0m7Wj7A,65148
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+ scout/adapter/mongo/case.py,sha256=Z1RuWHRm_5sddOujntFbj8fGhg9AdgUgrUb2Qqapiug,65353
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  scout/adapter/mongo/case_events.py,sha256=slHR4XJF9vRuEbuInJKMMAImLF8m7tHWVfGP42fbXr0,26859
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  scout/adapter/mongo/case_group.py,sha256=tG8DuO0rNYepV4k0yCGPqssODErc0HMsAypg3mfhcV0,1575
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  scout/adapter/mongo/ccv.py,sha256=VIz-Yqzm-1UVPDKvZkBllO4BOKXzvKCXcQUjTtZCHTI,4165
@@ -12,30 +12,30 @@ scout/adapter/mongo/clinvar.py,sha256=tczC39O3DFDkYgjt2RDgkkG-x1Mvx_99Hw7dAbIQ5g
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  scout/adapter/mongo/cytoband.py,sha256=2NoIAoQ7RPqcipiSymD2O9qH8lXscP3T5ejquOrD7uQ,2622
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  scout/adapter/mongo/disease_terms.py,sha256=4qcQRLuP5xn_RkB2RlNtwCrONmDuWwdlngZrj87BUEo,5637
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  scout/adapter/mongo/event.py,sha256=NnURFhS5odOXk7So_gGMHmALPAJM0PWzESI4FC06azE,19842
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- scout/adapter/mongo/filter.py,sha256=vzBJS_6vq2z76SH8PszdRR-MNuZ7_RA4VJvnkNYUs7s,8937
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+ scout/adapter/mongo/filter.py,sha256=rIdjiDJCrNDeTNgssKm7n1HTxne72jvlX2I3FQjQGo8,9687
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  scout/adapter/mongo/hgnc.py,sha256=P80WdIFkpFDeR6Pa0H-pgeScGrZdCviWVL4rqR5Aqvk,16547
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  scout/adapter/mongo/hpo.py,sha256=ps2Pix3sGeea7DenboZVP5j7Vh9WAgX3-sgpbAj0Eck,6871
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  scout/adapter/mongo/index.py,sha256=TZPVv6xBWsEtZpBUWp5uhjuPjQMfVss4lZZju49g1Lw,3577
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- scout/adapter/mongo/institute.py,sha256=GQmMKb_VzsvWwadp6gXHlSSpcG5ovF1ozdTzvpTFLpA,7025
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+ scout/adapter/mongo/institute.py,sha256=X_lQHSqSfMvE4PUb-txLvdjWqwdkEcNwUAq_9p6ay8A,7112
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  scout/adapter/mongo/managed_variant.py,sha256=mPbp64nMDwAij8zvBbFGjI3MLbk6CC-OO9RTwtEIi44,8451
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  scout/adapter/mongo/matchmaker.py,sha256=amTvFOlUbrt1RmecY_8hPY6bO3j79lc2UbmzlCQcRuk,6378
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- scout/adapter/mongo/omics_variant.py,sha256=VdkNG_l6vcr3UF25EixEfvIdMGkSGeNaMjLRhQHS_lc,7521
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+ scout/adapter/mongo/omics_variant.py,sha256=rgfHZYElFDNeh9Atx-oNhS3PbKbiDWn4JABGPZ33Vzk,8024
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  scout/adapter/mongo/panel.py,sha256=d1oMEYAiDGybLmlbbf3-fQdCdU0-T7x2XdIUwZGthYk,20031
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  scout/adapter/mongo/phenomodel.py,sha256=cypSS8YRzu98Bf1kC0orfrLNn_ZQSYCK8e4mNR5PaPY,2572
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- scout/adapter/mongo/query.py,sha256=NA1fM-iawE6nTWP_SFfSBGoV3heV9Eu7Uri0oExwgOw,34865
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+ scout/adapter/mongo/query.py,sha256=DqgpPGm9n3lmReHfVMGUNVCTvvMltRXSzaeYW5tDaXc,35327
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  scout/adapter/mongo/rank_model.py,sha256=wvDNI4OLf-f7ZYZ_Q_6qi0myxOJCNNJR_-2-_0u2K2M,5712
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  scout/adapter/mongo/transcript.py,sha256=3U1qtyxZ1DnrzdBJm_emJXISMYFKJuX_zAKynUt8NMY,7417
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  scout/adapter/mongo/user.py,sha256=QoQnRWqi_dV3ZwGzBonEU6Ap9TgMDf2x_C5UIqG0pa0,2569
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- scout/adapter/mongo/variant.py,sha256=1vfvspPOOPyXjpiQ-dJdnDa6ExWpas7ZMTCyL6o5cCg,35208
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+ scout/adapter/mongo/variant.py,sha256=r4CJ3yus3HKTdIHHKtrRitQkN3syuMy8pkWPgR7XyAc,35044
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  scout/adapter/mongo/variant_events.py,sha256=yNnMM58P1LbYFw73rWzti6l2zWa_G93ozUTbVkcz4_I,33475
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- scout/adapter/mongo/variant_loader.py,sha256=C05StRMFVChopcolPYXFIbh_S-FhYHu4NvBCpiBLOeE,28327
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+ scout/adapter/mongo/variant_loader.py,sha256=qay1v-LNYTAkOVeeKSuJhU6abYO_U26woAdvoyAgGsI,28205
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  scout/build/__init__.py,sha256=GUWEaXTpwsJil_KtrXBQJpZIwCQFSgo8NlK49R9IkA8,521
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  scout/build/acmg.py,sha256=M21MrrP_dtEyOuu6t-jBDdaqYcHPMLcwJlt9fHG2ycE,1523
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- scout/build/case.py,sha256=7Hry6ja0KvVhNQ1ecXy3HuaR7dY2x9O8f8FpYt4P6jo,11404
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+ scout/build/case.py,sha256=LtYx6zQcCoGCss48qf7uluzTlXVH0Pl-WhqYzkbIcZ8,11510
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  scout/build/ccv.py,sha256=cfAWSQ5cSBWURkL9_fPm1Y5aRcTIDOE9ieSWaYLufB4,1660
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  scout/build/disease.py,sha256=Zew9AF_z1NbbKcO3uJZ2wgni501SkfnYRgnaCZ4m8FY,2020
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  scout/build/hpo.py,sha256=LJBCTq-x09D0CSKcUHB8a6ynuUrVh_7Ia0ooA1BxMys,1207
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- scout/build/individual.py,sha256=a2L1NJF11oGaOU9LilWN5gftSyIRfk7H231mF2Y67WU,5232
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+ scout/build/individual.py,sha256=pLImS_cTrDSaSPlBT6sonGUZCeWUik3jni4X81CQfsE,5132
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  scout/build/institute.py,sha256=CZKn-cFbh0cWO2ySoRV_P1nYFizlyvu50LKrtAz-PLo,1330
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  scout/build/managed_variant.py,sha256=krcQBc4LLxlnUQwXuV2FxNLiSkMoIkLxQueYFl04Vyo,1666
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  scout/build/panel.py,sha256=smhtynG_ggNgUyuAGqg_-m1UMnBHhrk2ALutYoNTTec,4273
@@ -59,7 +59,7 @@ scout/commands/serve.py,sha256=OZRHJrvlIXz1NQ1NHB175TxTxgpblybIPIob0PIvDXk,1554
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  scout/commands/utils.py,sha256=T29f-1wTq3uoxqtv6QOqBdMBl7tLeEn8DYXnnv3gowI,306
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  scout/commands/wipe_database.py,sha256=TvCoXZCT-mvTqsZaFstV5u5FM8KAQstB3JxyGHYMLtg,1005
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  scout/commands/delete/__init__.py,sha256=6Z97FsWMqyKqF64Anl1zwljVNTfjJUCI7yylxIEnsUY,35
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- scout/commands/delete/delete_command.py,sha256=_x897Du0nTsYmSG_5LAIm6Z9sjKcaCrtAR7cwuNwl4I,13285
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+ scout/commands/delete/delete_command.py,sha256=c-cWdtc0VCLVLL5hpMxSuyaBiYCppm403eRoLhD1SSo,14568
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  scout/commands/download/__init__.py,sha256=mfDzxqKzJ0LgfPBN_fehkdX5BPy1FJ3rauA3ORLIjCM,39
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  scout/commands/download/ensembl.py,sha256=CsTMjYihBtXyfofNIQ2riL9UBzydDbqoNZ7jJVQ15ak,2112
@@ -91,19 +91,19 @@ scout/commands/load/institute.py,sha256=EYbDeWmpeRl0_jBnsckAp6qua5VyZKpczoHfADfY
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- scout/commands/load/research.py,sha256=6GBKJY3POQyGxfPwcfj06tcCX48CBTZqq8MSdjevBjM,4426
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+ scout/commands/load/research.py,sha256=7B-Xo5oAHB69szKp4nQM-vITVKstLQ8zLkaQ3TtiMiw,4458
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- scout/commands/load/variants.py,sha256=MqghhgjpP9QiWlBIb-LogtPvBSl3kO2v3OWNlPLuB14,9355
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+ scout/commands/load/variants.py,sha256=XnF5p_ZAltPgOnmGYtS4tuvJcVEZf7L6K9p6IdYfuEQ,9972
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- scout/commands/setup/setup_scout.py,sha256=Pj4Xmm-NsTykPpUkKu_cxDS42rNZOWlEdVFcnaCxDO4,9254
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+ scout/commands/setup/setup_scout.py,sha256=txS4tRwk1FMlS_qkyJl0XaZU0rFivqVCMqMi7iZtw78,9254
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  scout/commands/update/__init__.py,sha256=yKNjRTVFsSTko8T7znfMqSI_HsGPN2-z1c0twkwO5uE,25
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- scout/commands/update/case.py,sha256=hDcgYc27-LOeXiilW5DLhAel2-uAaYvTdUUvGlgNInE,7301
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+ scout/commands/update/case.py,sha256=8g-vLnjBCAL5hB-btQOFmzn2fVJM6OHILCgP1nDqKYo,7737
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  scout/commands/update/genes.py,sha256=GhYIn2zWrAZMhdJjzzrpo8AquFqr7XOvosOk8lg4Zwk,6989
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- scout/commands/update/individual.py,sha256=z2NY4f97GuYPRX7UCwSqbUMi-l-W0bRqN2xF6ilmKNU,4081
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+ scout/commands/update/individual.py,sha256=0xaqWeTWqs8wW3T2j-v3MNkVE4a1eY-NpF6NiazhN_Q,4080
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@@ -125,21 +125,21 @@ scout/commands/view/intervals.py,sha256=8Pofxy0DwL2Euh3SdnTLLWsU6DjLNOwIGdxeCS83
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  scout/commands/view/users.py,sha256=MKlmhDYRM7Yf-Trmi1ijEuqsDIUn326bdFADyDs7XYg,832
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- scout/constants/__init__.py,sha256=ke7uVYgqn6dqByEQdfLQ1H061yOvaNyt8E-WP84Dgr8,5854
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- scout/constants/acmg.py,sha256=hYPzoLUqpuTjGXfIN80Nb1njriesH9oAELu1scp-ByU,18083
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+ scout/constants/__init__.py,sha256=QsXeGXaS58SpLCLxVvf1BxZB2YfPZWzI-7BmMyJ8hBw,5891
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+ scout/constants/acmg.py,sha256=N9X2sJLbK6g6tDPhW0gYQifImzaowb4F6jfTYUBr-Z0,18717
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- scout/constants/file_types.py,sha256=3BU2cw40cHMT5IzEGEF_SsIhgYUbnIlUCRmwmB01fzI,3046
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- scout/constants/filters.py,sha256=1bcj-z7__yv5eQpjB60wqSHZ3U5U0CVyNbcYT-Wn-vc,957
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- scout/constants/gene_tags.py,sha256=CpUH13UOVZrYGXTKXS667u0So9j1A4Ig4KNGYdrDtLk,4513
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- scout/constants/igv_tracks.py,sha256=NbBBnM3s1S8cJM_S36qi7SU2ACW_lJVS6EP2W0kCTIQ,4697
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+ scout/constants/file_types.py,sha256=DoXe34PJLYYHRH8-VqU1u1sd13lckl3nPckweXltKE4,2669
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+ scout/constants/filters.py,sha256=ZgVGt6No5D7PiN1o1wWDm3E5SCRk7YLya87_4QtIMPs,979
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+ scout/constants/gene_tags.py,sha256=yBrMu9qXyYaQ13l3XMakooyd2ZtPXm1XgpSSH_bC-5U,4513
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+ scout/demo/643594.somalier.ancestry.tsv,sha256=5PQE_7rqbz4OSVFIJDYXxGNZ-WpTZMt4hSrpZR6asCk,99
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+ scout/demo/643594.somalier.pairs.tsv,sha256=OI7_ggJgILynapz5dDN5EkZzDMXazmXAFuOZPtNOXdM,400
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@@ -187,7 +190,7 @@ scout/demo/ADM1059A2.test.cgh,sha256=29YOnGgPB3wxWwxVwf_mCLrhZ4Cf5hqVxw_DUggBe7Y
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@@ -211,7 +214,7 @@ scout/demo/panelapp_panels_reduced.json,sha256=dwvRRwfIIFq6H4ze0wyOIllN-LSreK5jh
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+ scout/demo/rnafusion.load_config.yaml,sha256=nbx-uEnEY4wA0ro8mJI4cRHk--h3Tbtj0sJD7BYO6Jk,562
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@@ -334,7 +337,7 @@ scout/demo/images/custom_images/replicons/640x480_ATN1.svg,sha256=r67CMchC-E5kpG
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@@ -346,7 +349,7 @@ scout/demo/resources/ensembl_transcripts_38_reduced.txt,sha256=NI1vd1kOvnkTstHj_
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- scout/demo/resources/gnomad.v4.0.constraint_metrics_reduced.tsv,sha256=baHCDkrUiN9JTMYqo0PA7aQeXljQ51GlswnZJBAwWiI,1509494
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+ scout/demo/resources/gnomad.v4.1.constraint_metrics_reduced.tsv,sha256=OF9DtuKp5snMhl-TF9ymaRIrMCVbD2EZKR59DornX-8,1686211
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@@ -357,7 +360,7 @@ scout/demo/resources/reduced.hpo.obo,sha256=H9sPbyhGT48fOQ79w37Kjy6sTZQXc0zTwG59
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@@ -367,7 +370,7 @@ scout/export/panel.py,sha256=IJlTYD5c8B1ys7L4h3p273cPE_5cgahbRcWDO8Nap6I,5316
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+ scout/load/all.py,sha256=GSzBGpk6csfUDcLOMk14VQgQnXgowjyvr6ximzChUFk,3494
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@@ -390,21 +393,21 @@ scout/models/disease_term.py,sha256=KFrIkoyImhVDf4YAMYyluQZvDE9GNEa533M_4IMeIlQ,
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+ scout/models/managed_variant.py,sha256=SZ0qgohhqB7S0VoySo0hShDUrTfgDdwjxcqCRxQKx0I,2517
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+ scout/models/omics_variant.py,sha256=aDT5WcohwZz9vtrxmM4W-nDKyFDOlfMyEGzMAt7robI,9301
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- scout/models/case/case_loading_models.py,sha256=GNeXZFrJ_1ISSxqO2VpKXazCLksLsPbTNL67csIIwQQ,21568
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+ scout/models/case/case.py,sha256=ENTUh3lrfc6LmOASbNDXiudDZsocHu-2LIhNz64-wPc,5295
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+ scout/models/case/case_loading_models.py,sha256=LuzURd1TqYKsUaW-UZVenVdLEOGdzr-LQbDLRI_5dPs,21944
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- scout/parse/case.py,sha256=-sGKWYWcskMagrDpEoeCIAJacwCR2feC8SwWvT0FJVw,11577
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+ scout/parse/case.py,sha256=Me4zzvaCf8aoWd48_ecczEoV0rmUt2jp2sJdAF7oKr4,15686
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@@ -418,7 +421,7 @@ scout/parse/omim.py,sha256=Qgzx3xoQ-HoVrvjE9QlbjlKgNPBb9kF028F5foko0ow,12428
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- scout/parse/peddy.py,sha256=uM49GaZMtr8waCsZDvCHDS5JDQ43JUlhdWh9C7f7ZvU,5418
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+ scout/parse/pedqc.py,sha256=ssfRKA4jB_et3eCclzFyxgqk9lD1r3CAZTGKWYGs9ZE,5107
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@@ -429,7 +432,7 @@ scout/parse/variant/compound.py,sha256=6M60DrZk8A7-X3ICGEAVpWyjLC_UgXcK1zd_o7Cue
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- scout/parse/variant/frequency.py,sha256=kpUNrXvg6IeLvf3TFmEni5lUfp1jFIMCKMrevJwUCNg,7854
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+ scout/parse/variant/frequency.py,sha256=OaYjFp9zgNJg1OSxIepZHyu3t-N2ZzVbmpkHs45GxcM,7976
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@@ -438,57 +441,57 @@ scout/parse/variant/managed_variant.py,sha256=qwmi2sPLwGZM5izSsMpvhQ9vfMHREiwiIz
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+ scout/parse/variant/variant.py,sha256=i7JwwpqO8tlJG7AXdyB4NQBusf8Rkja27gCVZkq-wYo,25026
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447
- scout/server/app.py,sha256=70YdN9eWL1ySEYkuAHKOk_WA4Fm5dcIwtIZEcEf-xA0,10836
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+ scout/server/app.py,sha256=eLSAglIu3N2zBxVMQaEsMlYV7enLDLulzq_Y3b-KQLk,11341
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- scout/server/links.py,sha256=f2h_zUFt4Tm_383ZmdIGsA6mUVQbpQmJ199ZTzUWemE,28115
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- scout/server/utils.py,sha256=d1fGdSwo-XjNHVjHd-uT3mGmUJ8yYB6weT7VgHo9nxM,12592
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+ scout/server/links.py,sha256=rJTHO4G40uLiWCtPr2n0Q0pBMtSOhjjh7F41jBoufM4,27656
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+ scout/server/utils.py,sha256=qB_3GbmcSQ-2wjTBabd3R-1TS5NzrSSRxCm77dVqvSI,12765
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- scout/server/blueprints/alignviewers/controllers.py,sha256=EtNKOBw_4Ba4aNskBTQrDW5Mo4siccRXrpIYbgqURzI,14316
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+ scout/server/blueprints/alignviewers/controllers.py,sha256=cLYvNhVFOhbHgBW3bJZJhmU87vKdOtz0hvGQ1hz6zaY,14404
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  scout/server/blueprints/alignviewers/templates/alignviewers/igv_sashimi_viewer.html,sha256=37ArJCraTajqWlCvyQYVfSvWCg94pRDIMvf2Y7Oe_j4,5545
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- scout/server/blueprints/alignviewers/templates/alignviewers/igv_viewer.html,sha256=u7_OUfcGt-S6BFhwleE4mNprshO870CnzhgLpe4tocg,8564
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- scout/server/blueprints/alignviewers/templates/alignviewers/utils.html,sha256=x2B0vs8ZFmzF5QlI4a4EaLyRXkNRNlfcc75Q52uLu6k,336
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+ scout/server/blueprints/alignviewers/templates/alignviewers/igv_viewer.html,sha256=VRhPCt-0BuwOOkwi3tzrYNII6VPCyT0HYG6fuetBFV8,8729
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+ scout/server/blueprints/alignviewers/templates/alignviewers/utils.html,sha256=sPkIgivgYcXkESAbEODi2LeLtYyNWsUdd64xGsX8ejM,336
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- scout/server/blueprints/cases/controllers.py,sha256=UzzFpDfS66f2ZL7cwDdpDFFRR_OtJzds9kc7Wx0U0wc,55747
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- scout/server/blueprints/cases/views.py,sha256=MQDOnLuywAQkVBgYaZAbaj9f6tps18bpo4nDFm77S4s,43165
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+ scout/server/blueprints/cases/controllers.py,sha256=RqmtP-BnXH4K3ELU9u9Ur9xKLjl6Gt80Cz7HpuuN-zM,56646
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+ scout/server/blueprints/cases/views.py,sha256=6CcJ3Vgycf8gvBT-InpbNo0enRhDKNPC2W6hp6jDKas,42938
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- scout/server/blueprints/cases/templates/cases/case.html,sha256=9Fcn-OFA1yIHchD0PjDs7-Y8I7Qqr8o6cavN0eOi5rI,37183
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+ scout/server/blueprints/cases/templates/cases/case.html,sha256=BEK_dsLBah2aC_iqKfcGXH696pF7OkR5VSfwBF0JWdc,37499
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- scout/server/blueprints/cases/templates/cases/case_report.html,sha256=-ATAfUnT4a6dmdUSFuGjGPK7r6_XgOXPJtC-Lu8hOgs,66304
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+ scout/server/blueprints/cases/templates/cases/case_report.html,sha256=lum4fIh6ur_bdnMeYLFGXht0LaF2t-T1StAk8F0cZ5o,67481
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  scout/server/blueprints/cases/templates/cases/case_sma.html,sha256=99rmRyDXFXjooB52TI5_ebJKv1ZAJbVXEw4deHfSVMA,7285
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  scout/server/blueprints/cases/templates/cases/case_tabular_view.html,sha256=ko-LDUKmIoTazMZ2nFWvPEZsgObU07RwqIkDYFjokoY,4317
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- scout/server/blueprints/cases/templates/cases/chanjo2_form.html,sha256=5Wmk7DM8LI3MynqzxeTzAr_EoEBwVVo31djcI5ZlTdo,2164
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- scout/server/blueprints/cases/templates/cases/collapsible_actionbar.html,sha256=H45WZK2qVY47wgttdASjRooRKFs2wQXAnH18u80hRfg,30895
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+ scout/server/blueprints/cases/templates/cases/chanjo2_form.html,sha256=I2n-aZqJWPzhT5uP0X4deH33gJXu6Ku9Ui28GG1Ilmo,2197
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+ scout/server/blueprints/cases/templates/cases/collapsible_actionbar.html,sha256=Zk-ezZ_Ae7gtDw2pDCvyXk-iFoPcD5y3h1THLPKPgk8,31404
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  scout/server/blueprints/cases/templates/cases/diseases.html,sha256=ETTQI0Nrl_v86NoX9mFZcvWD-qM1IJoqPmHPWn__Grw,1677
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- scout/server/blueprints/cases/templates/cases/gene_panel.html,sha256=lkC_Piqaq-paYr4GUCwQaR8EgGOUXDMoW5sPLDW7yzg,11628
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+ scout/server/blueprints/cases/templates/cases/gene_panel.html,sha256=7_5Sio4X365HPqDjX49aqBWavmYR15v4c5fHvqpMUw0,12035
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  scout/server/blueprints/cases/templates/cases/index.html,sha256=y91d7yI64Fbz7wS8CSsi3vcCo6rFmS0mnstUipnVHUQ,1136
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- scout/server/blueprints/cases/templates/cases/individuals_table.html,sha256=wjcrPMYXZGRWxM0GzHwbLmsOPWtmke9p2T22ngCBMyU,11460
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+ scout/server/blueprints/cases/templates/cases/individuals_table.html,sha256=KMWlkE-1wJGcCUcv1VigSakwxeXH0qdBGptzLvx8his,11657
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  scout/server/blueprints/cases/templates/cases/matchmaker.html,sha256=kPYnmcZJ1gmx_guW52H7baT9Sw4WE0VJmLGF6N7Z3iA,13639
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  scout/server/blueprints/cases/templates/cases/phenotype.html,sha256=7vz5XPUExD6vc-wdijLKnPzaOFm9mQxOZ_ITAL3y7U8,16420
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- scout/server/blueprints/cases/templates/cases/utils.html,sha256=gHcxf3DOGcJJZMfjKY4NgvU_tjta5OnyWrKZy9pfGyY,35981
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+ scout/server/blueprints/cases/templates/cases/utils.html,sha256=g72DMi01zpuOxQ8plf5oms8_BrlVfd86equS7E5LN-0,36061
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  scout/server/blueprints/clinvar/__init__.py,sha256=BV3aH2AbiA2WWrUEMbGd0H9MefFd2eTsRE9ShywbzpI,30
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- scout/server/blueprints/clinvar/controllers.py,sha256=lCrVlokjnSURvsYkm6sTMxrZOL1Xj3VQAWbYr1o_mEY,24251
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+ scout/server/blueprints/clinvar/controllers.py,sha256=CxGX12hnndqXbyLcv0KF0SBGIpUSRM50w4GYluuCtrs,24329
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  scout/server/blueprints/clinvar/form.py,sha256=2h42YJzaOtsdEglxqt7F1i2ncjSU_IHNt-m4QOJytK4,5148
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- scout/server/blueprints/clinvar/views.py,sha256=hPyTJA7Qy6QOL-ENSG1N0atnQXuYCb-iiO8fuNDjJns,6036
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+ scout/server/blueprints/clinvar/views.py,sha256=nXZMPjldV_wuvj9k5_hsfkVGCvFlhT8fssS-tMlVXYk,5710
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  scout/server/blueprints/clinvar/templates/clinvar/clinvar_howto.html,sha256=phFsRl6Hv94sy4GueBN0MXYbQsW6qmR1NoH-3Iwt2zs,4852
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- scout/server/blueprints/clinvar/templates/clinvar/clinvar_submissions.html,sha256=NqR66lFN-Svm0IC0FZTts1oPK8S80t69SRSgT-727LA,18185
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- scout/server/blueprints/clinvar/templates/clinvar/multistep_add_variant.html,sha256=zfU_dPLtjiX8NE7IGTfABt9q46Li8rWFXyyMSvc_U-E,32017
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+ scout/server/blueprints/clinvar/templates/clinvar/clinvar_submissions.html,sha256=zJJehPFmxwL6tTChYQBvtOKn3Q2v6RD8pBLiJF6jHaQ,18095
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+ scout/server/blueprints/clinvar/templates/clinvar/multistep_add_variant.html,sha256=arIh-qIaeoSz_hjEyAvtnMquhRQZ95OxW2k5xyzS3a8,32477
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  scout/server/blueprints/dashboard/__init__.py,sha256=9YTjGeFexyEbl4P-gs7j8VEjyhnVwHZFfz57eTtod1M,69
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  scout/server/blueprints/dashboard/controllers.py,sha256=x6EWKROskF4iyZ5_hAgL7CWp1X3CXHp-7v0JVsDHKZU,9612
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  scout/server/blueprints/dashboard/forms.py,sha256=vbdkujKZxVjiZw2inNhysN3yYMPCdMPbqvKV88DamwI,501
@@ -508,8 +511,8 @@ scout/server/blueprints/genes/templates/genes/gene.html,sha256=a--c-IjzNKN_JW7z9
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  scout/server/blueprints/institutes/__init__.py,sha256=kGSyYrBC1QaEQBDdoMkMLfaowV7roaV5DowICi_0RSQ,65
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- scout/server/blueprints/institutes/controllers.py,sha256=qu8bonz74Ff-nTevOy4BaLhYrXbgD4rZEc81NvBkK_w,34055
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- scout/server/blueprints/institutes/forms.py,sha256=7ixKPYewR24lnM9vwGNS9EcBHR6072kPRuvE0jk6acE,6685
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+ scout/server/blueprints/institutes/controllers.py,sha256=BSAzBNc0-oULM8FpF2xWVSaIJNNGkVRqKPklePcYEbQ,34505
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+ scout/server/blueprints/institutes/forms.py,sha256=uKyl1bfAFYB65P0DHMihBWhE9bvxNixAIkznuelpIBo,6810
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  scout/server/blueprints/institutes/static/select2_darktheme.css,sha256=Nq_va597W_e5y-52B4ClwSJzACq0WFbPU8SIp3DtKIo,1818
@@ -519,11 +522,11 @@ scout/server/blueprints/institutes/templates/overview/cases.html,sha256=GOt1Y2PZ
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  scout/server/blueprints/institutes/templates/overview/causatives.html,sha256=192pgqUSXQF4qhC933qsYtTwvmlqDctxwHcArERkHc8,1619
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  scout/server/blueprints/institutes/templates/overview/filters.html,sha256=Dzu5YicmdjW_zGqbCUrb8TMbSUuRaG47itTMwwX7Bm8,3102
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  scout/server/blueprints/institutes/templates/overview/gene_variants.html,sha256=EyhBZEdMZQBaJWR_FDeabuWXRSd4Xcqh0teaxVyNvAE,8442
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- scout/server/blueprints/institutes/templates/overview/institute_settings.html,sha256=EqOek5bso0wKqeEnUPW1z2mIpwRl8kuFyDKHJZ0FJx4,5014
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+ scout/server/blueprints/institutes/templates/overview/institute_settings.html,sha256=u4myXSYSo2BY0uXpNs715_HiDvsziMFUl4m6kK9Awuc,5168
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  scout/server/blueprints/institutes/templates/overview/institute_sidebar.html,sha256=vQQunXH2Cr8-z2Kc7uTCzsSqIX14Xld44NWqdhpw-Hs,4304
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  scout/server/blueprints/institutes/templates/overview/timeline.html,sha256=upTv7v4sUwxGfJDSyk8F5zPb61dedG66zgfvh_SMR4M,2289
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  scout/server/blueprints/institutes/templates/overview/users.html,sha256=6dkbDBNLw2b97M2Pd8JImpPoT3FLTcl84oBN3inLJRg,1134
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- scout/server/blueprints/institutes/templates/overview/utils.html,sha256=9W60kUmIRPsu_JX0kDMg0hkz8CUY8vn2MdoegRAMqFc,33199
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+ scout/server/blueprints/institutes/templates/overview/utils.html,sha256=zkoqVNdBaeUtGFQfCNb7Vo3GlOypjg42XS0GvHlih7o,34297
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  scout/server/blueprints/institutes/templates/overview/verified.html,sha256=qxZ8mIPX00ZXIy_5eLO2QmLrjJZrhw97kdXBZxpRj38,3363
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  scout/server/blueprints/login/controllers.py,sha256=bg0me00OvwYJiTm4dZnbl8eyRRRDquBMs5U7_YV4xWI,1883
@@ -545,8 +548,8 @@ scout/server/blueprints/managed_variants/views.py,sha256=wHOClPy2ZCIQvandia90kG6
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  scout/server/blueprints/managed_variants/templates/managed_variants/managed_variants.html,sha256=jrhcdUODlhWHiAgVeHowJ0c0wWDYFIU5iMO1oWjsG-A,17311
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  scout/server/blueprints/omics_variants/__init__.py,sha256=8UVXrChArhIvMxtgUcG-udvmlTn56q41iy-naOZw5us,37
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  scout/server/blueprints/omics_variants/controllers.py,sha256=AnM70stvLniJIU3pFUX-InNjuT-7K0RpuAEYa7vM-jw,3912
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- scout/server/blueprints/omics_variants/views.py,sha256=P-mo2S1RBGYxsNCFqSTNQNLvqiH9r6_AoZgsOWpopPE,3817
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- scout/server/blueprints/omics_variants/templates/omics_variants/outliers.html,sha256=gv9llZzH-AKJ4i2XJKZFJi9IBgvF84WI7QCVuvFOhTA,13703
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+ scout/server/blueprints/omics_variants/views.py,sha256=EuF3DCAFuOzX-86al0_IfOqnqH3B_RhypQq313HNfLA,3725
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+ scout/server/blueprints/omics_variants/templates/omics_variants/outliers.html,sha256=J6XmEc5dBAveBbNzVypfw6WbvBKntTr_YPqjUf40DTY,13951
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  scout/server/blueprints/panels/__init__.py,sha256=usxBF0O7zNX1d9jt-8DRoFZwcfHHS96Gv87LDr1AgG4,53
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  scout/server/blueprints/panels/controllers.py,sha256=_LXiayDyGcyRQ3Hw13fD8zVYFQ1jIIXUMQ49WsimrZ8,12618
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  scout/server/blueprints/panels/forms.py,sha256=DYlhYpnpv7ehf9JlY3HRFwy-TZ5QDHB0RIRaNTAW1jQ,696
@@ -604,15 +607,15 @@ scout/server/blueprints/public/static/ideograms/chromosome-X.png,sha256=Dj7npcW_
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  scout/server/blueprints/variant/__init__.py,sha256=SlD8-Aoj9Jq9aVTJjtFfsu-0sUVfkzpiEXcH8z9q6dI,54
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- scout/server/blueprints/variant/controllers.py,sha256=dnx5YFVF62V2kAspfGpw0Mr0qUH1VoU1EBTP1hvIlZM,29691
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- scout/server/blueprints/variant/utils.py,sha256=BMezzz9Y9ZoGMaLKRbQopJUkWWUo1M9Xi-pw82Vdm4k,25079
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+ scout/server/blueprints/variant/controllers.py,sha256=5ElWo2PwAYTyUSa5v8Q1EdltbqS050CPfTLDPw3XGN0,30710
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+ scout/server/blueprints/variant/utils.py,sha256=AWbsGc2dIUBp-r0D_FYlZKxdF3Tr5SHNxL5pAlZeie0,25226
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  scout/server/blueprints/variant/verification_controllers.py,sha256=eKzP222e7xuFOaQaI9MLOrD9RWtI8uGB1cJYbcXLzF0,10972
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- scout/server/blueprints/variant/views.py,sha256=lP6K0BD0d4TDxOMFiQ-UUxF4UkoALzX-nxo_aSY7muI,18969
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+ scout/server/blueprints/variant/views.py,sha256=82gYXNREV17l8XTWCaptrv5lDfJOG4kiqAaX5IN62Do,19000
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  scout/server/blueprints/variant/templates/variant/buttons.html,sha256=4vlnvJKhr28qqzevlecAIvumvOgLZhGyPYQm68AnKzU,7608
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- scout/server/blueprints/variant/templates/variant/cancer-variant.html,sha256=ZUnZYURdlLfiJ1Ryok5oRVa96bvBErhIgym2VlWlryQ,14001
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+ scout/server/blueprints/variant/templates/variant/cancer-variant.html,sha256=RWH1P1y7HRnefyHgFvPNKcQjTYGNI8xT76kNZWhm9ck,14786
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  scout/server/blueprints/variant/templates/variant/ccv.html,sha256=X33qKY1EvzoLldko1hK5tgE__xxNU54vq6fRzFew6Vc,8671
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- scout/server/blueprints/variant/templates/variant/components.html,sha256=dmKxuSrJgvKRtRAzXMN9W2-uZwsLwzde0W4CHqnBb-Q,26185
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+ scout/server/blueprints/variant/templates/variant/components.html,sha256=sZNMtmofAmGJN2OKFm6njsAuI3mJLCiAJMhhALhUP7I,27395
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  scout/server/blueprints/variant/templates/variant/rank_score_results.html,sha256=32RfBrpZ_J-1WYE01Bdd5IC9i1MAzXT7GF27OlElk94,2040
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  scout/server/blueprints/variant/templates/variant/sanger.html,sha256=0kVnscTw3KUwjR4QOEuNJMOK9eADGEn9qGNtGx2ST7Y,4507
@@ -620,45 +623,45 @@ scout/server/blueprints/variant/templates/variant/str-variant-reviewer.html,sha2
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  scout/server/blueprints/variant/templates/variant/sv-variant.html,sha256=4FBomOYYEDQWOl6jvW4Ffd6PQhqmPPKDA23wzMlZ6zI,16778
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  scout/server/translations/sv/LC_MESSAGES/messages.mo,sha256=eI53pCtlYj1MXduDicMZRxBhgOV_TlmMUpH7IhncgDY,4452
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- scout/utils/sort.py,sha256=1AcbeZ6vdt_UXM3BLDBa3aQmN4qxrqtskxwD19oBhvw,756
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+ scout/utils/scout_requests.py,sha256=4UWE4PdpUyJ9h6CtvdrD69tQDBDTZk318-v-xHnWbEs,12796
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- scout_browser-4.95.0.dist-info/METADATA,sha256=IbeBpNPEf-Th3spPxj1Jjt1KXYuLBgWig8t7CWb6-dY,15642
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- scout_browser-4.95.0.dist-info/entry_points.txt,sha256=q_mxFwbMFTwXRDDIRVcqKram2ubMVmvs3CSNvZri1nY,45
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- scout_browser-4.95.0.dist-info/RECORD,,
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+ scout_browser-4.97.0.dist-info/METADATA,sha256=PwpjKLDDi3EUID0JXBlAIGLF5Vy2MVqrq9STkC-CLzc,15642
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+ scout_browser-4.97.0.dist-info/WHEEL,sha256=qtCwoSJWgHk21S1Kb4ihdzI2rlJ1ZKaIurTj_ngOhyQ,87
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+ scout_browser-4.97.0.dist-info/licenses/LICENSE,sha256=TM1Y9Cqbwk55JVfxD-_bpGLtZQAeN9RovQlqHK6eOTY,1485
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+ scout_browser-4.97.0.dist-info/RECORD,,