scout-browser 4.94__py3-none-any.whl → 4.94.1__py3-none-any.whl

scout/server/blueprints/cases/views.py

@@ -7,6 +7,7 @@ import shutil
 from ast import literal_eval
 from io import BytesIO
 from operator import itemgetter
+from tempfile import NamedTemporaryFile, mkdtemp
 from typing import Generator, Optional, Union
 
 from cairosvg import svg2png
@@ -286,7 +287,9 @@ def pdf_case_report(institute_id, case_name):
     # Workaround to be able to print the case pedigree to pdf
     if case_obj.get("madeline_info") and case_obj.get("madeline_info") != "":
         try:
-            write_to = os.path.join(cases_bp.static_folder, "madeline.png")
+            write_to = NamedTemporaryFile(
+                mode="a+", prefix=case_obj.get("_id"), suffix="madeline.png"
+            )
             svg2png(
                 bytestring=case_obj["madeline_info"],
                 write_to=write_to,
@@ -322,11 +325,8 @@ def mt_report(institute_id, case_name):
     institute_obj, case_obj = institute_and_case(store, institute_id, case_name)
 
     # create a temp folder to write excel files into
-    temp_excel_dir = os.path.join(
-        cases_bp.static_folder, "_".join([case_obj["display_name"], "mt_reports"])
-    )
-    os.makedirs(temp_excel_dir, exist_ok=True)
 
+    temp_excel_dir = mkdtemp(suffix="_".join([case_obj["display_name"], "mt_reports"]))
     if controllers.mt_excel_files(store, case_obj, temp_excel_dir):
         data = zip_dir_to_obj(temp_excel_dir)
 

{scout_browser-4.94.dist-info → scout_browser-4.94.1.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: scout-browser
-Version: 4.94
+Version: 4.94.1
 Summary: Clinical DNA variant visualizer and browser
 Project-URL: Repository, https://github.com/Clinical-Genomics/scout
 Project-URL: Changelog, https://github.com/Clinical-Genomics/scout/blob/main/CHANGELOG.md

{scout_browser-4.94.dist-info → scout_browser-4.94.1.dist-info}/RECORD

@@ -461,7 +461,7 @@ scout/server/blueprints/api/__init__.py,sha256=HR6HjS7ot1K_8Lt5eQdNT154z_FCdHGSi
 scout/server/blueprints/api/views.py,sha256=pbl78wfhrm1T8JmiJDYF3BbTbfFrlF-hQRbuv2GWI0s,3729
 scout/server/blueprints/cases/__init__.py,sha256=_c17kPFITFYcIVphF4V9bf0PZBer8bU3rtVWQnljKDU,52
 scout/server/blueprints/cases/controllers.py,sha256=Nn2MrlqAHzDfm8RSkjrWpeCD4W7DoPp_8Gm8Eu4l44Q,54362
-scout/server/blueprints/cases/views.py,sha256=NCBYZl56jrdmwip4-UXq0-1oH9Y0EddTVDXdCVpmCws,43141
+scout/server/blueprints/cases/views.py,sha256=MQDOnLuywAQkVBgYaZAbaj9f6tps18bpo4nDFm77S4s,43165
 scout/server/blueprints/cases/static/case_images.js,sha256=pb_gG7DNQc-1lADqSII8YvjBwmHyeQWYVtuu2jyrTlU,14997
 scout/server/blueprints/cases/static/case_styles.css,sha256=2Pgc8pFf9DR5HM1sTdAjaRWhjL-bK5bsQnLpH54HZak,541
 scout/server/blueprints/cases/static/edit_pedigree.js,sha256=ntC5fie7SsOYJau8qkke1UHxjiYWY_gBzWcIkGpdJUA,2978
@@ -683,8 +683,8 @@ scout/utils/md5.py,sha256=KkgdxOf7xbF9AF40ZjQKCgWaxFWJ9tp9RKjd8SU6IoA,649
 scout/utils/scout_requests.py,sha256=lgPumNI_EikBZR1m9ztZI_mZAfV29y1KGoiBv9kejzQ,12797
 scout/utils/sort.py,sha256=1AcbeZ6vdt_UXM3BLDBa3aQmN4qxrqtskxwD19oBhvw,756
 scout/utils/track_resources.py,sha256=eUjSEe-Ff8BIb4BHPC_COkJocQO2PaWueiPz1GAuiwY,2614
-scout_browser-4.94.dist-info/METADATA,sha256=ARNNqDP69pZ_TiWq-E-x73TQOruCkufvBkMtXwlTMp0,15640
-scout_browser-4.94.dist-info/WHEEL,sha256=qtCwoSJWgHk21S1Kb4ihdzI2rlJ1ZKaIurTj_ngOhyQ,87
-scout_browser-4.94.dist-info/entry_points.txt,sha256=q_mxFwbMFTwXRDDIRVcqKram2ubMVmvs3CSNvZri1nY,45
-scout_browser-4.94.dist-info/licenses/LICENSE,sha256=TM1Y9Cqbwk55JVfxD-_bpGLtZQAeN9RovQlqHK6eOTY,1485
-scout_browser-4.94.dist-info/RECORD,,
+scout_browser-4.94.1.dist-info/METADATA,sha256=GokLVy4fCW8zv-7QwERH1vldMGvaOn0iIstTGd4KoGA,15642
+scout_browser-4.94.1.dist-info/WHEEL,sha256=qtCwoSJWgHk21S1Kb4ihdzI2rlJ1ZKaIurTj_ngOhyQ,87
+scout_browser-4.94.1.dist-info/entry_points.txt,sha256=q_mxFwbMFTwXRDDIRVcqKram2ubMVmvs3CSNvZri1nY,45
+scout_browser-4.94.1.dist-info/licenses/LICENSE,sha256=TM1Y9Cqbwk55JVfxD-_bpGLtZQAeN9RovQlqHK6eOTY,1485
+scout_browser-4.94.1.dist-info/RECORD,,