scout-browser 4.94.1__py3-none-any.whl → 4.96.0__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- scout/adapter/mongo/case.py +26 -25
- scout/adapter/mongo/hgnc.py +5 -1
- scout/adapter/mongo/managed_variant.py +4 -2
- scout/adapter/mongo/query.py +6 -4
- scout/adapter/mongo/variant.py +11 -6
- scout/build/case.py +3 -1
- scout/build/panel.py +1 -1
- scout/constants/acmg.py +25 -18
- scout/constants/gene_tags.py +22 -12
- scout/demo/643594.research.mei.vcf.gz +0 -0
- scout/demo/643594.research.mei.vcf.gz.tbi +0 -0
- scout/demo/cancer.load_config.yaml +1 -3
- scout/demo/rnafusion.load_config.yaml +1 -0
- scout/load/panelapp.py +8 -12
- scout/models/case/case_loading_models.py +3 -0
- scout/parse/case.py +1 -0
- scout/parse/omim.py +5 -6
- scout/parse/panelapp.py +16 -42
- scout/parse/variant/compound.py +20 -21
- scout/server/app.py +12 -0
- scout/server/blueprints/cases/controllers.py +38 -9
- scout/server/blueprints/cases/templates/cases/case_report.html +37 -4
- scout/server/blueprints/cases/templates/cases/collapsible_actionbar.html +12 -0
- scout/server/blueprints/clinvar/controllers.py +1 -0
- scout/server/blueprints/clinvar/templates/clinvar/clinvar_submissions.html +10 -14
- scout/server/blueprints/clinvar/views.py +18 -31
- scout/server/blueprints/managed_variants/forms.py +17 -2
- scout/server/blueprints/managed_variants/templates/managed_variants/managed_variants.html +2 -2
- scout/server/blueprints/variant/templates/variant/cancer-variant.html +2 -2
- scout/server/blueprints/variant/templates/variant/components.html +27 -4
- scout/server/blueprints/variant/templates/variant/sv-variant.html +2 -2
- scout/server/blueprints/variant/templates/variant/variant_details.html +1 -1
- scout/server/blueprints/variant/views.py +11 -5
- scout/server/blueprints/variants/forms.py +33 -5
- scout/server/blueprints/variants/templates/variants/cancer-variants.html +5 -4
- scout/server/blueprints/variants/templates/variants/str-variants.html +13 -9
- scout/server/extensions/clinvar_extension.py +56 -2
- scout/server/links.py +0 -14
- scout/utils/acmg.py +5 -5
- scout/utils/ccv.py +1 -9
- scout/utils/link.py +4 -3
- {scout_browser-4.94.1.dist-info → scout_browser-4.96.0.dist-info}/METADATA +1 -1
- {scout_browser-4.94.1.dist-info → scout_browser-4.96.0.dist-info}/RECORD +46 -46
- {scout_browser-4.94.1.dist-info → scout_browser-4.96.0.dist-info}/WHEEL +0 -0
- {scout_browser-4.94.1.dist-info → scout_browser-4.96.0.dist-info}/entry_points.txt +0 -0
- {scout_browser-4.94.1.dist-info → scout_browser-4.96.0.dist-info}/licenses/LICENSE +0 -0
@@ -3,7 +3,7 @@
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{% from "variant/buttons.html" import reviewer_button%}
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{% from "variant/gene_disease_relations.html" import inheritance_badge %}
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{% from "variants/components.html" import external_scripts, external_stylesheets, frequency_cell_general %}
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{% from "variants/utils.html" import cell_rank, dismiss_variants_block, filter_form_footer, update_stash_filter_button_status, pagination_footer, pagination_hidden_div, str_filters, filter_script_main %}
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{% from "variants/utils.html" import callers_cell, cell_rank, dismiss_variants_block, filter_form_footer, update_stash_filter_button_status, pagination_footer, pagination_hidden_div, str_filters, filter_script_main %}
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{% block title %}
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@@ -60,13 +60,14 @@
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<thead class="thead table-light">
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<tr>
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<th style="width:8%" title="Index">Index</th>
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<th title="Repeat ID">Repeat locus</th>
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<th
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<th title="ALT">
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<th title="ReferenceSize">
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<th title="
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<th title="Repeat locus ID">Repeat locus</th>
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<th style="width:8%" title="Reference repeat unit">Ref RU</th>
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<th style="width:6%" title="ALT">Est size</th>
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<th style="width:6%" title="ReferenceSize">Ref size</th>
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<th style="width:8%" title="Caller and call filter status">Qual</th>
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<th style="width:8%" title="Status">Status</th>
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<th title="GT">Genotype</th>
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<th title="Chromosome" style="width:6%">Chr.</th>
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<th style="width:6%" title="Chromosome" style="width:6%">Chr.</th>
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<th title="Position" style="width:20%">Position</th>
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</tr>
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</thead>
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@@ -95,11 +96,14 @@
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<td class="text-end">{{ variant.str_display_ru or variant.str_ru or variant.reference }}</td>
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<td class="text-end"><b><span data-bs-toggle="tooltip" title="{{ variant.alternative }}">{{ variant.str_mc }}</span></b></td>
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<td class="text-end"><span data-bs-toggle="tooltip" title="{{ variant.reference }}">{{ variant.str_ref or "." }}</span></td>
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<td>{{ callers_cell(variant) }}</td>
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<td>{{ str_status(variant) }}</td>
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<td>{% for sample in variant.samples %}
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{% if sample.genotype_call != "./." %}
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<div class="
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<div class="row">
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<div class="col-8">{{ sample.display_name }}</div>
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<div class="col-4 text-end">{{ sample.genotype_call }}</div>
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</div>
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{% endif %}
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{% endfor %}
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</td>
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@@ -1,5 +1,7 @@
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import json
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import logging
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from io import StringIO
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from typing import Optional, Tuple
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import requests
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from flask import flash
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@@ -17,6 +19,7 @@ class ClinVarApi:
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def init_app(self, app):
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self.convert_service = "/".join([PRECLINVAR_URL, "csv_2_json"])
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self.delete_service = "/".join([PRECLINVAR_URL, "delete"])
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self.submit_service_url = app.config.get("CLINVAR_API_URL") or CLINVAR_API_URL_DEFAULT
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def set_header(self, api_key) -> dict:
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except Exception as ex:
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return self.submit_service_url, None, ex
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def
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def json_submission_status(self, submission_id: str, api_key=None) -> dict:
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"""Retrieve the status of a ClinVar submission using the https://submit.ncbi.nlm.nih.gov/api/v1/submissions/SUBnnnnnn/actions/ endpoint."""
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header: dict = self.set_header(api_key)
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actions_url = f"{self.submit_service_url}{submission_id}/actions/"
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actions_resp: requests.models.Response = requests.get(actions_url, headers=header)
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return actions_resp.json()
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def get_clinvar_scv_accession(self, url: str) -> Optional[str]:
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"""Downloads a submission summary from the given URL into a temporary file and parses this file to retrieve a SCV accession, if available."""
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# Send a GET request to download the file
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response = requests.get(url)
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response.raise_for_status() # Raise an error if the request failed
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# Use an in-memory file-like object to hold the JSON content
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with StringIO(response.text) as memory_file:
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json_data = json.load(memory_file)
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submission_data: dict = json_data["submissions"][0]
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processing_status: str = submission_data["processingStatus"]
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if processing_status != "Success":
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flash(
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f"Could not delete provided submission because its processing status is '{processing_status}'.",
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"warning",
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)
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return
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return submission_data["identifiers"]["clinvarAccession"]
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def delete_clinvar_submission(self, submission_id: str, api_key=None) -> Tuple[int, dict]:
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"""Remove a successfully processed submission from ClinVar."""
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try:
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submission_status_doc: dict = self.json_submission_status(
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submission_id=submission_id, api_key=api_key
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)
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subm_response: dict = submission_status_doc["actions"][0]["responses"][0]
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submission_status = subm_response["status"]
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if submission_status != "processed":
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return (
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500,
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f"Clinvar submission status should be 'processed' and in order to attempt data deletion. Submission status is '{submission_status}'.",
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)
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# retrieve ClinVar SCV accession (SCVxxxxxxxx) from file url returned by subm_response
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subm_summary_url: str = subm_response["files"][0]["url"]
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scv_accession: Optional(str) = self.get_clinvar_scv_accession(url=subm_summary_url)
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# Remove ClinVar submission using preClinVar's 'delete' endpoint
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resp = requests.post(
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self.delete_service, data={"api_key": api_key, "clinvar_accession": scv_accession}
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)
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return resp.status_code, resp.json()
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except Exception as ex:
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return 500, str(ex)
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scout/server/links.py
CHANGED
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from flask import current_app
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from scout.constants import SPIDEX_HUMAN
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from scout.utils.convert import amino_acid_residue_change_3_to_1
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SHALLOW_REFERENCE_STR_LOCI = ["ARX", "HOXA13"]
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ensembl_link=ensembl_link(variant_obj, build),
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mitomap_link=mitomap_link(variant_obj),
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hmtvar_link=hmtvar_link(variant_obj),
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spidex_human=spidex_human(variant_obj),
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spliceai_link=spliceai_link(variant_obj, build),
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str_source_link=str_source_link(variant_obj),
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snp_links=snp_links(variant_obj),
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return url_template.format(id=variant_obj.get("hmtvar_variant_id"))
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def spidex_human(variant_obj):
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"""Translate SPIDEX annotation to human readable string."""
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if variant_obj.get("spidex") is None:
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return "not_reported"
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if abs(variant_obj["spidex"]) < SPIDEX_HUMAN["low"]["pos"][1]:
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return "low"
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if abs(variant_obj["spidex"]) < SPIDEX_HUMAN["medium"]["pos"][1]:
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return "medium"
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return "high"
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def external_primer_order_link(variant_obj, build=None):
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"""Compose link for primers orders based on the configuration paramaters EXTERNAL_PRIMER_ORDER_LINK_(37|38)"""
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build = build or 37
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scout/utils/acmg.py
CHANGED
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# coding=UTF-8
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from typing import Optional
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from typing import List, Optional
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from scout.constants import ACMG_COMPLETE_MAP
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from scout.constants.acmg import ACMG_POTENTIAL_CONFLICTS
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}
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def get_acmg_conflicts(acmg_terms:
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"""Check potential
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def get_acmg_conflicts(acmg_terms: List[str]) -> List[str]:
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"""Check for potential conflicting terms, return a list of references as strings."""
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conflicts = []
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for
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if
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for conflict_set, reference in ACMG_POTENTIAL_CONFLICTS:
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if conflict_set.issubset(set(acmg_terms)):
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conflicts.append(reference)
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return conflicts
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scout/utils/ccv.py
CHANGED
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}
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if not ccv_terms:
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point_classification = "uncertain_significance"
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return {
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"points": points,
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"temperature": TEMPERATURE_STRINGS[points].get("label"),
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"temperature_class": TEMPERATURE_STRINGS[points].get("color"),
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"temperature_icon": TEMPERATURE_STRINGS[points].get("icon"),
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"point_classification": CCV_COMPLETE_MAP[point_classification].get("short"),
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}
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return {}
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points = get_ccv_points(ccv_terms)
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scout/utils/link.py
CHANGED
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hgnc_symbol = gene["hgnc_symbol"]
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for alias in gene["previous_symbols"]:
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alias = alias.upper()
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true_id = None
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if alias == hgnc_symbol:
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true_id = hgnc_id
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if alias in alias_genes:
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alias_genes[alias
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alias_genes[alias]["ids"].add(hgnc_id)
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if true_id:
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alias_genes[alias
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alias_genes[alias]["true"] = hgnc_id
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else:
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alias_genes[alias
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alias_genes[alias] = {"true": true_id, "ids": set([hgnc_id])}
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return alias_genes
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Metadata-Version: 2.4
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Name: scout-browser
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Version: 4.
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Version: 4.96.0
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Summary: Clinical DNA variant visualizer and browser
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Project-URL: Repository, https://github.com/Clinical-Genomics/scout
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Project-URL: Changelog, https://github.com/Clinical-Genomics/scout/blob/main/CHANGELOG.md
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@@ -4,7 +4,7 @@ scout/adapter/client.py,sha256=IuajRsEwTG41ZP14X09Q1Cj94zIgmIvUtlXfcAFn0EA,1513
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scout/adapter/mongo/__init__.py,sha256=NdHYCUXWUAuX5cUS3-6HCws2hW9uoGep8i0SC-oJd3k,31
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scout/adapter/mongo/acmg.py,sha256=v2Zuw-6APVmcnBnNXa18WJEu2vj5GUhZNiKMkruJsBI,4170
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scout/adapter/mongo/base.py,sha256=iIa2AjGNztKHcZzolY0T6r7Oh0guj6R1putztp4OTNY,4427
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scout/adapter/mongo/case.py,sha256=
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scout/adapter/mongo/case.py,sha256=TS2erNplLCulGoF7zRMr_3eW1MyJd3VL2mOW7XsOZJM,65342
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scout/adapter/mongo/case_events.py,sha256=slHR4XJF9vRuEbuInJKMMAImLF8m7tHWVfGP42fbXr0,26859
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scout/adapter/mongo/case_group.py,sha256=tG8DuO0rNYepV4k0yCGPqssODErc0HMsAypg3mfhcV0,1575
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scout/adapter/mongo/ccv.py,sha256=VIz-Yqzm-1UVPDKvZkBllO4BOKXzvKCXcQUjTtZCHTI,4165
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scout/adapter/mongo/disease_terms.py,sha256=4qcQRLuP5xn_RkB2RlNtwCrONmDuWwdlngZrj87BUEo,5637
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scout/adapter/mongo/event.py,sha256=NnURFhS5odOXk7So_gGMHmALPAJM0PWzESI4FC06azE,19842
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scout/adapter/mongo/filter.py,sha256=vzBJS_6vq2z76SH8PszdRR-MNuZ7_RA4VJvnkNYUs7s,8937
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scout/adapter/mongo/hgnc.py,sha256=
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scout/adapter/mongo/hgnc.py,sha256=P80WdIFkpFDeR6Pa0H-pgeScGrZdCviWVL4rqR5Aqvk,16547
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scout/adapter/mongo/hpo.py,sha256=ps2Pix3sGeea7DenboZVP5j7Vh9WAgX3-sgpbAj0Eck,6871
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scout/adapter/mongo/index.py,sha256=TZPVv6xBWsEtZpBUWp5uhjuPjQMfVss4lZZju49g1Lw,3577
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scout/adapter/mongo/institute.py,sha256=GQmMKb_VzsvWwadp6gXHlSSpcG5ovF1ozdTzvpTFLpA,7025
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scout/adapter/mongo/managed_variant.py,sha256=
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scout/adapter/mongo/managed_variant.py,sha256=mPbp64nMDwAij8zvBbFGjI3MLbk6CC-OO9RTwtEIi44,8451
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scout/adapter/mongo/matchmaker.py,sha256=amTvFOlUbrt1RmecY_8hPY6bO3j79lc2UbmzlCQcRuk,6378
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scout/adapter/mongo/omics_variant.py,sha256=VdkNG_l6vcr3UF25EixEfvIdMGkSGeNaMjLRhQHS_lc,7521
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scout/server/blueprints/cases/views.py,sha256=MQDOnLuywAQkVBgYaZAbaj9f6tps18bpo4nDFm77S4s,43165
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scout/server/blueprints/cases/static/case_images.js,sha256=pb_gG7DNQc-1lADqSII8YvjBwmHyeQWYVtuu2jyrTlU,14997
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scout/server/blueprints/cases/static/case_styles.css,sha256=2Pgc8pFf9DR5HM1sTdAjaRWhjL-bK5bsQnLpH54HZak,541
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scout/server/blueprints/cases/static/madeline.js,sha256=KHxKMBVlYVJODNu5QkY9hhsGkDJNoaCoCZZ0DRu0YN0,1175
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scout/server/blueprints/cases/templates/cases/case.html,sha256=9Fcn-OFA1yIHchD0PjDs7-Y8I7Qqr8o6cavN0eOi5rI,37183
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scout/server/blueprints/cases/templates/cases/case_bionano.html,sha256=PLoRv7hDJcHwxhi-0hC9fQSZc7V_aUYHBhhQqcn_2G8,5946
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scout/server/blueprints/cases/templates/cases/case_sma.html,sha256=99rmRyDXFXjooB52TI5_ebJKv1ZAJbVXEw4deHfSVMA,7285
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scout/server/blueprints/cases/templates/cases/case_tabular_view.html,sha256=ko-LDUKmIoTazMZ2nFWvPEZsgObU07RwqIkDYFjokoY,4317
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scout/server/blueprints/cases/templates/cases/chanjo2_form.html,sha256=5Wmk7DM8LI3MynqzxeTzAr_EoEBwVVo31djcI5ZlTdo,2164
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scout/server/blueprints/cases/templates/cases/collapsible_actionbar.html,sha256=Zk-ezZ_Ae7gtDw2pDCvyXk-iFoPcD5y3h1THLPKPgk8,31404
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scout/server/blueprints/cases/templates/cases/diseases.html,sha256=ETTQI0Nrl_v86NoX9mFZcvWD-qM1IJoqPmHPWn__Grw,1677
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scout/server/blueprints/cases/templates/cases/gene_panel.html,sha256=lkC_Piqaq-paYr4GUCwQaR8EgGOUXDMoW5sPLDW7yzg,11628
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scout/server/blueprints/cases/templates/cases/index.html,sha256=y91d7yI64Fbz7wS8CSsi3vcCo6rFmS0mnstUipnVHUQ,1136
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scout/server/blueprints/clinvar/__init__.py,sha256=BV3aH2AbiA2WWrUEMbGd0H9MefFd2eTsRE9ShywbzpI,30
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scout/server/blueprints/clinvar/controllers.py,sha256=
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scout/server/blueprints/clinvar/controllers.py,sha256=usIiPsk-Ku_mUq975LRpxgibnD6wtupmveVE_RcERkk,24252
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scout/server/blueprints/clinvar/form.py,sha256=2h42YJzaOtsdEglxqt7F1i2ncjSU_IHNt-m4QOJytK4,5148
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scout/server/blueprints/clinvar/views.py,sha256=nXZMPjldV_wuvj9k5_hsfkVGCvFlhT8fssS-tMlVXYk,5710
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scout/server/blueprints/clinvar/templates/clinvar/clinvar_howto.html,sha256=phFsRl6Hv94sy4GueBN0MXYbQsW6qmR1NoH-3Iwt2zs,4852
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scout/server/blueprints/clinvar/templates/clinvar/clinvar_submissions.html,sha256=zJJehPFmxwL6tTChYQBvtOKn3Q2v6RD8pBLiJF6jHaQ,18095
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scout/server/blueprints/clinvar/templates/clinvar/multistep_add_variant.html,sha256=zfU_dPLtjiX8NE7IGTfABt9q46Li8rWFXyyMSvc_U-E,32017
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scout/server/blueprints/dashboard/__init__.py,sha256=9YTjGeFexyEbl4P-gs7j8VEjyhnVwHZFfz57eTtod1M,69
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scout/server/blueprints/dashboard/controllers.py,sha256=x6EWKROskF4iyZ5_hAgL7CWp1X3CXHp-7v0JVsDHKZU,9612
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scout/server/blueprints/managed_variants/__init__.py,sha256=wpDezF_TYKSRkrUGX_aWxdpITMvKvnNqWQtuy6YV1bI,63
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scout/server/blueprints/managed_variants/controllers.py,sha256=HQ9jkTMzVEBLEmswXE7lg8Zj05ENshZeirzIpxm52lk,7281
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scout/server/blueprints/managed_variants/forms.py,sha256=DmG0KuY82R1pRIUC7niJFQqFuZCDB4x-vj6635hFliQ,2590
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scout/server/blueprints/managed_variants/views.py,sha256=wHOClPy2ZCIQvandia90kG6I6IPhxKVOiAnG4esXh-0,2473
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scout/server/blueprints/managed_variants/templates/managed_variants/managed_variants.html,sha256=jrhcdUODlhWHiAgVeHowJ0c0wWDYFIU5iMO1oWjsG-A,17311
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scout/server/blueprints/omics_variants/__init__.py,sha256=8UVXrChArhIvMxtgUcG-udvmlTn56q41iy-naOZw5us,37
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scout/server/blueprints/omics_variants/controllers.py,sha256=AnM70stvLniJIU3pFUX-InNjuT-7K0RpuAEYa7vM-jw,3912
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scout/server/blueprints/omics_variants/views.py,sha256=P-mo2S1RBGYxsNCFqSTNQNLvqiH9r6_AoZgsOWpopPE,3817
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scout/server/blueprints/variant/controllers.py,sha256=dnx5YFVF62V2kAspfGpw0Mr0qUH1VoU1EBTP1hvIlZM,29691
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scout/server/blueprints/variant/utils.py,sha256=BMezzz9Y9ZoGMaLKRbQopJUkWWUo1M9Xi-pw82Vdm4k,25079
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scout/server/blueprints/variant/verification_controllers.py,sha256=eKzP222e7xuFOaQaI9MLOrD9RWtI8uGB1cJYbcXLzF0,10972
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scout/server/blueprints/variant/views.py,sha256=
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scout/server/blueprints/variant/views.py,sha256=82gYXNREV17l8XTWCaptrv5lDfJOG4kiqAaX5IN62Do,19000
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scout/server/blueprints/variant/templates/variant/acmg.html,sha256=Fk4vL1Pu4G3wZsfiUO2jBlFLFoRgFAeqChlIyas5Bb4,8758
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scout/server/blueprints/variant/templates/variant/buttons.html,sha256=4vlnvJKhr28qqzevlecAIvumvOgLZhGyPYQm68AnKzU,7608
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scout/server/blueprints/variant/templates/variant/cancer-variant.html,sha256=
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scout/server/blueprints/variant/templates/variant/cancer-variant.html,sha256=vBtPp_jvMeRlwQ71TjGNdG8eCFU27ylFExza5_kJiqg,14043
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scout/server/blueprints/variant/templates/variant/ccv.html,sha256=X33qKY1EvzoLldko1hK5tgE__xxNU54vq6fRzFew6Vc,8671
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scout/server/blueprints/variant/templates/variant/components.html,sha256=
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scout/server/blueprints/variant/templates/variant/components.html,sha256=dmKxuSrJgvKRtRAzXMN9W2-uZwsLwzde0W4CHqnBb-Q,26185
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scout/server/blueprints/variant/templates/variant/gene_disease_relations.html,sha256=1U77akxqbb4AS2GSyvFwGD6D7rP68L3KXKLUmP73664,7256
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scout/server/blueprints/variant/templates/variant/rank_score_results.html,sha256=32RfBrpZ_J-1WYE01Bdd5IC9i1MAzXT7GF27OlElk94,2040
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scout/server/blueprints/variant/templates/variant/sanger.html,sha256=0kVnscTw3KUwjR4QOEuNJMOK9eADGEn9qGNtGx2ST7Y,4507
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scout/server/blueprints/variant/templates/variant/str-variant-reviewer.html,sha256=p0nWqo71GJ8ACLEzXuZbJAzDXoCHZLvH6f7yLi3JslI,2208
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scout/server/blueprints/variant/templates/variant/tx_overview.html,sha256=EXLBDh_SgNVEO7MPMjlmfO6MDhtDcj0JyvZdRgxbwSM,6756
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scout/server/blueprints/variant/templates/variant/variant_details.html,sha256=FeuANKP5gL9SWwYnC-4-dXyZOgy0Nq6FXAjED3nuqjI,21097
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scout/server/blueprints/variants/__init__.py,sha256=W1KCz9kEbVlNO0o3NvLitYLQoP_3JSJ5KSjhpcjlUBQ,55
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scout/server/blueprints/variants/controllers.py,sha256=ILJt2Jl9ShkePgZI1Grff-_gcxlZFzQ8zoQ86iZPxOI,74205
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scout/server/blueprints/variants/utils.py,sha256=ifFBoyigx0A5KPE4iz9NSpyuUeF1bElrb4ohQLD2GlU,919
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scout/server/blueprints/variants/templates/variants/cancer-sv-variants.html,sha256=QlGmUEdUQ7gCq7tMMUFAlGqqC9jFB78Q0h6tSp3QUas,7271
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scout/server/blueprints/variants/templates/variants/cancer-variants.html,sha256=nqJ1q23arq4yJokMJpsyf8-ayzZkD2zgwH7j-Y9bpfE,9688
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scout/server/blueprints/variants/templates/variants/components.html,sha256=PGtcPGVbd3gcdG_6ozA66LDo3ZJ8VoehaDMUZjwyA5Q,17431
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scout/server/blueprints/variants/templates/variants/fusion-variants.html,sha256=XGaLgWobzeFHwyQLXr_Yq9THssf8tGU91VbFKdGOFBg,4801
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scout/server/blueprints/variants/templates/variants/indicators.html,sha256=5aSXytiWvaU87cqcR9GcB7U5jP8t-PVnor8FpKLl_k0,4847
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scout/server/blueprints/variants/templates/variants/mei-variants.html,sha256=2Tb0vfzM--kJa5mVbT7L32h4E8nKYRSb245g6O5JIUU,5860
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scout/server/blueprints/variants/templates/variants/str-variants.html,sha256=
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scout/server/blueprints/variants/templates/variants/str-variants.html,sha256=n424D8xV76bCKDSFzzIsWfFAoU2dAYE-PPZyTtQeMdM,10924
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scout/server/blueprints/variants/templates/variants/sv-variants.html,sha256=fRDnB9wXago2OB2mthp0rD_Es4kxnj9YKRlOKCGVW3s,6407
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scout/server/blueprints/variants/templates/variants/utils.html,sha256=MNDc2JwumU9ukISizSAraxIY06rHXR2Ze32RNnDEBI4,50042
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scout/server/blueprints/variants/templates/variants/variants.html,sha256=KnCcsA1VaRdsbRCCw9Rg0TJTUvq03X9S24QgCqVToUk,9328
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scout/server/extensions/chanjo2_extension.py,sha256=ZKCIv8muR9bzCV0_rM277ePvxdWC3wuPIwY4VppH7lY,1530
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scout/server/extensions/chanjo_extension.py,sha256=JtKAgT6ASnCcKYbgKMWGwflISLzHuyDKpcyljzCV_aY,4045
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scout/server/extensions/clinvar_extension.py,sha256=
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scout/server/extensions/clinvar_extension.py,sha256=X3LsJZ4XL8hr8FyqhW1Zn4OmXEG0_edCZRHtWhTuLVk,6332
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scout/server/extensions/gens_extension.py,sha256=KOF-pP4DiRVQkygthAq6XCHnZwAGHo1kjIxmvW7ItYI,1003
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scout/server/extensions/ldap_extension.py,sha256=nVgJ6YhSyvpg8J4bSYzJwoEvKhP0faWazt3Xk0ixE2U,2746
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scout/server/extensions/loqus_extension.py,sha256=uiqUXQ7Q7DCj6C20TKgL8yLu9DXov95vrJfhq0tvbTM,12602
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scout/update/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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scout/update/panel.py,sha256=4z-vQ7GVIJXtlIub9pubFcQ-I9mLX5fRXKNPBdpuhJw,1649
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scout/utils/__init__.py,sha256=DHCMH05dxkyD7m9QSs0WXsQQPgVRFQ9XvyNeNpHjjvg,74
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scout/utils/acmg.py,sha256=
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scout/utils/algorithms.py,sha256=w--NauXbQohZis7obr39a8bS57C4NRelYXn79V7m1dU,800
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scout/utils/ccv.py,sha256=
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scout/utils/ccv.py,sha256=WhVyIzNW0ttfT4ZegOPGFR1xqqjRFNgnJSY7DPfXGNQ,5605
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scout/utils/convert.py,sha256=asrsis3zkt9jXzseRmCqSa4_t1UT73HPPQRW-DKDdqE,1794
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scout/utils/coordinates.py,sha256=n8WUFn9zohXfjxgFGryyg6mzdl0zBG8uVCdyjhizSpM,609
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scout/utils/date.py,sha256=GUALqEIgWtbopqC9wJnVKmVm5FRq111iz4RfojUIfG0,1334
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scout/utils/gene.py,sha256=uzIGrPBfOkhRGGR9iTSYa00w6PWijjpzSAWRo54wixM,1430
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scout/utils/handle.py,sha256=tLjinHNLADa3IJSxMp_HJe9cbiMlPTsfky4hujplPqU,327
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scout/utils/hgvs.py,sha256=P5i3fIK8WZZlUnjZ8XpMDUG5KDXRCDSOs55DfK5acsc,898
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scout/utils/link.py,sha256=HpQvwu0hmuCrs7TcAExLmOzEGr3glWuu8iaW0ao5pEA,9011
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scout/utils/md5.py,sha256=KkgdxOf7xbF9AF40ZjQKCgWaxFWJ9tp9RKjd8SU6IoA,649
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scout/utils/scout_requests.py,sha256=lgPumNI_EikBZR1m9ztZI_mZAfV29y1KGoiBv9kejzQ,12797
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scout/utils/sort.py,sha256=1AcbeZ6vdt_UXM3BLDBa3aQmN4qxrqtskxwD19oBhvw,756
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scout/utils/track_resources.py,sha256=eUjSEe-Ff8BIb4BHPC_COkJocQO2PaWueiPz1GAuiwY,2614
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scout_browser-4.96.0.dist-info/METADATA,sha256=Jipku15t2ek-OH7TQfUdgEIM1yieNz1hpRoOrcBkr-U,15642
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scout_browser-4.96.0.dist-info/WHEEL,sha256=qtCwoSJWgHk21S1Kb4ihdzI2rlJ1ZKaIurTj_ngOhyQ,87
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scout_browser-4.96.0.dist-info/entry_points.txt,sha256=q_mxFwbMFTwXRDDIRVcqKram2ubMVmvs3CSNvZri1nY,45
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scout_browser-4.96.0.dist-info/licenses/LICENSE,sha256=TM1Y9Cqbwk55JVfxD-_bpGLtZQAeN9RovQlqHK6eOTY,1485
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