scout-browser 4.94.1__py3-none-any.whl → 4.96.0__py3-none-any.whl

scout/server/blueprints/variants/templates/variants/str-variants.html

@@ -3,7 +3,7 @@
 {% from "variant/buttons.html" import reviewer_button%}
 {% from "variant/gene_disease_relations.html" import inheritance_badge %}
 {% from "variants/components.html" import external_scripts, external_stylesheets, frequency_cell_general %}
-{% from "variants/utils.html" import cell_rank, dismiss_variants_block, filter_form_footer, update_stash_filter_button_status, pagination_footer, pagination_hidden_div, str_filters, filter_script_main %}
+{% from "variants/utils.html" import callers_cell, cell_rank, dismiss_variants_block, filter_form_footer, update_stash_filter_button_status, pagination_footer, pagination_hidden_div, str_filters, filter_script_main %}
 
 
 {% block title %}
@@ -60,13 +60,14 @@
       <thead class="thead table-light">
         <tr>
           <th style="width:8%" title="Index">Index</th>
-          <th title="Repeat ID">Repeat locus</th>
-          <th title="Repeat unit">Reference repeat unit</th>
-          <th title="ALT">Estimated size</th>
-          <th title="ReferenceSize">Reference size</th>
-          <th title="Status">Status</th>
+          <th title="Repeat locus ID">Repeat locus</th>
+          <th style="width:8%" title="Reference repeat unit">Ref RU</th>
+          <th style="width:6%" title="ALT">Est size</th>
+          <th style="width:6%" title="ReferenceSize">Ref size</th>
+          <th style="width:8%" title="Caller and call filter status">Qual</th>
+          <th style="width:8%" title="Status">Status</th>
           <th title="GT">Genotype</th>
-          <th title="Chromosome" style="width:6%">Chr.</th>
+          <th style="width:6%" title="Chromosome" style="width:6%">Chr.</th>
           <th title="Position" style="width:20%">Position</th>
         </tr>
       </thead>
@@ -95,11 +96,14 @@
 	          <td class="text-end">{{ variant.str_display_ru or variant.str_ru or variant.reference }}</td>
             <td class="text-end"><b><span data-bs-toggle="tooltip" title="{{ variant.alternative }}">{{ variant.str_mc }}</span></b></td>
             <td class="text-end"><span data-bs-toggle="tooltip" title="{{ variant.reference }}">{{ variant.str_ref or "." }}</span></td>
+            <td>{{ callers_cell(variant) }}</td>
             <td>{{ str_status(variant) }}</td>
             <td>{% for sample in variant.samples %}
                   {% if sample.genotype_call != "./." %}
-                    <div class="float-start">{{ sample.display_name }}</div>
-                    <div class="float-end">{{ sample.genotype_call }}</div><br>
+                    <div class="row">
+                      <div class="col-8">{{ sample.display_name }}</div>
+                      <div class="col-4 text-end">{{ sample.genotype_call }}</div>
+                    </div>
                   {% endif %}
                 {% endfor %}
             </td>

scout/server/extensions/clinvar_extension.py

@@ -1,5 +1,7 @@
 import json
 import logging
+from io import StringIO
+from typing import Optional, Tuple
 
 import requests
 from flask import flash
@@ -17,6 +19,7 @@ class ClinVarApi:
 
     def init_app(self, app):
         self.convert_service = "/".join([PRECLINVAR_URL, "csv_2_json"])
+        self.delete_service = "/".join([PRECLINVAR_URL, "delete"])
         self.submit_service_url = app.config.get("CLINVAR_API_URL") or CLINVAR_API_URL_DEFAULT
 
     def set_header(self, api_key) -> dict:
@@ -77,10 +80,61 @@ class ClinVarApi:
         except Exception as ex:
             return self.submit_service_url, None, ex
 
-    def show_submission_status(self, submission_id: str, api_key=None):
+    def json_submission_status(self, submission_id: str, api_key=None) -> dict:
         """Retrieve the status of a ClinVar submission using the https://submit.ncbi.nlm.nih.gov/api/v1/submissions/SUBnnnnnn/actions/ endpoint."""
 
         header: dict = self.set_header(api_key)
         actions_url = f"{self.submit_service_url}{submission_id}/actions/"
         actions_resp: requests.models.Response = requests.get(actions_url, headers=header)
-        flash(f"Response from ClinVar: {actions_resp.json()}", "primary")
+        return actions_resp.json()
+
+    def get_clinvar_scv_accession(self, url: str) -> Optional[str]:
+        """Downloads a submission summary from the given URL into a temporary file and parses this file to retrieve a SCV accession, if available."""
+        # Send a GET request to download the file
+        response = requests.get(url)
+        response.raise_for_status()  # Raise an error if the request failed
+
+        # Use an in-memory file-like object to hold the JSON content
+        with StringIO(response.text) as memory_file:
+
+            json_data = json.load(memory_file)
+
+            submission_data: dict = json_data["submissions"][0]
+            processing_status: str = submission_data["processingStatus"]
+            if processing_status != "Success":
+                flash(
+                    f"Could not delete provided submission because its processing status is '{processing_status}'.",
+                    "warning",
+                )
+                return
+            return submission_data["identifiers"]["clinvarAccession"]
+
+    def delete_clinvar_submission(self, submission_id: str, api_key=None) -> Tuple[int, dict]:
+        """Remove a successfully processed submission from ClinVar."""
+
+        try:
+            submission_status_doc: dict = self.json_submission_status(
+                submission_id=submission_id, api_key=api_key
+            )
+
+            subm_response: dict = submission_status_doc["actions"][0]["responses"][0]
+            submission_status = subm_response["status"]
+
+            if submission_status != "processed":
+                return (
+                    500,
+                    f"Clinvar submission status should be 'processed' and in order to attempt data deletion. Submission status is '{submission_status}'.",
+                )
+
+            # retrieve ClinVar SCV accession (SCVxxxxxxxx) from file url returned by subm_response
+            subm_summary_url: str = subm_response["files"][0]["url"]
+            scv_accession: Optional(str) = self.get_clinvar_scv_accession(url=subm_summary_url)
+
+            # Remove ClinVar submission using preClinVar's 'delete' endpoint
+            resp = requests.post(
+                self.delete_service, data={"api_key": api_key, "clinvar_accession": scv_accession}
+            )
+            return resp.status_code, resp.json()
+
+        except Exception as ex:
+            return 500, str(ex)

scout/server/links.py

@@ -3,7 +3,6 @@ from urllib.parse import quote
 
 from flask import current_app
 
-from scout.constants import SPIDEX_HUMAN
 from scout.utils.convert import amino_acid_residue_change_3_to_1
 
 SHALLOW_REFERENCE_STR_LOCI = ["ARX", "HOXA13"]
@@ -486,7 +485,6 @@ def get_variant_links(institute_obj: dict, variant_obj: dict, build: int = None)
         ensembl_link=ensembl_link(variant_obj, build),
         mitomap_link=mitomap_link(variant_obj),
         hmtvar_link=hmtvar_link(variant_obj),
-        spidex_human=spidex_human(variant_obj),
         spliceai_link=spliceai_link(variant_obj, build),
         str_source_link=str_source_link(variant_obj),
         snp_links=snp_links(variant_obj),
@@ -908,18 +906,6 @@ def hmtvar_link(variant_obj):
     return url_template.format(id=variant_obj.get("hmtvar_variant_id"))
 
 
-def spidex_human(variant_obj):
-    """Translate SPIDEX annotation to human readable string."""
-    if variant_obj.get("spidex") is None:
-        return "not_reported"
-    if abs(variant_obj["spidex"]) < SPIDEX_HUMAN["low"]["pos"][1]:
-        return "low"
-    if abs(variant_obj["spidex"]) < SPIDEX_HUMAN["medium"]["pos"][1]:
-        return "medium"
-
-    return "high"
-
-
 def external_primer_order_link(variant_obj, build=None):
     """Compose link for primers orders based on the configuration paramaters EXTERNAL_PRIMER_ORDER_LINK_(37|38)"""
     build = build or 37

scout/utils/acmg.py

@@ -1,6 +1,6 @@
 # coding=UTF-8
 
-from typing import Optional
+from typing import List, Optional
 
 from scout.constants import ACMG_COMPLETE_MAP
 from scout.constants.acmg import ACMG_POTENTIAL_CONFLICTS
@@ -362,12 +362,12 @@ def get_acmg_temperature(acmg_terms: set) -> Optional[dict]:
     }
 
 
-def get_acmg_conflicts(acmg_terms: set) -> list:
-    """Check potential conflict paris, return list of reference strings."""
+def get_acmg_conflicts(acmg_terms: List[str]) -> List[str]:
+    """Check for potential conflicting terms, return a list of references as strings."""
 
     conflicts = []
-    for t1, t2, reference in ACMG_POTENTIAL_CONFLICTS:
-        if t1 in acmg_terms and t2 in acmg_terms:
+    for conflict_set, reference in ACMG_POTENTIAL_CONFLICTS:
+        if conflict_set.issubset(set(acmg_terms)):
             conflicts.append(reference)
 
     return conflicts

scout/utils/ccv.py

@@ -146,15 +146,7 @@ def get_ccv_temperature(ccv_terms: set) -> Optional[dict]:
     }
 
     if not ccv_terms:
-        points = 0
-        point_classification = "uncertain_significance"
-        return {
-            "points": points,
-            "temperature": TEMPERATURE_STRINGS[points].get("label"),
-            "temperature_class": TEMPERATURE_STRINGS[points].get("color"),
-            "temperature_icon": TEMPERATURE_STRINGS[points].get("icon"),
-            "point_classification": CCV_COMPLETE_MAP[point_classification].get("short"),
-        }
+        return {}
 
     points = get_ccv_points(ccv_terms)
 

scout/utils/link.py

@@ -36,15 +36,16 @@ def genes_by_alias(hgnc_genes):
         hgnc_symbol = gene["hgnc_symbol"]
 
         for alias in gene["previous_symbols"]:
+            alias = alias.upper()
             true_id = None
             if alias == hgnc_symbol:
                 true_id = hgnc_id
             if alias in alias_genes:
-                alias_genes[alias.upper()]["ids"].add(hgnc_id)
+                alias_genes[alias]["ids"].add(hgnc_id)
                 if true_id:
-                    alias_genes[alias.upper()]["true"] = hgnc_id
+                    alias_genes[alias]["true"] = hgnc_id
             else:
-                alias_genes[alias.upper()] = {"true": true_id, "ids": set([hgnc_id])}
+                alias_genes[alias] = {"true": true_id, "ids": set([hgnc_id])}
 
     return alias_genes
 

{scout_browser-4.94.1.dist-info → scout_browser-4.96.0.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: scout-browser
-Version: 4.94.1
+Version: 4.96.0
 Summary: Clinical DNA variant visualizer and browser
 Project-URL: Repository, https://github.com/Clinical-Genomics/scout
 Project-URL: Changelog, https://github.com/Clinical-Genomics/scout/blob/main/CHANGELOG.md

{scout_browser-4.94.1.dist-info → scout_browser-4.96.0.dist-info}/RECORD

@@ -4,7 +4,7 @@ scout/adapter/client.py,sha256=IuajRsEwTG41ZP14X09Q1Cj94zIgmIvUtlXfcAFn0EA,1513
 scout/adapter/mongo/__init__.py,sha256=NdHYCUXWUAuX5cUS3-6HCws2hW9uoGep8i0SC-oJd3k,31
 scout/adapter/mongo/acmg.py,sha256=v2Zuw-6APVmcnBnNXa18WJEu2vj5GUhZNiKMkruJsBI,4170
 scout/adapter/mongo/base.py,sha256=iIa2AjGNztKHcZzolY0T6r7Oh0guj6R1putztp4OTNY,4427
-scout/adapter/mongo/case.py,sha256=aHHCOeB1wjEX98HKBpDFWC0zZ149Orn93XkW0m7Wj7A,65148
+scout/adapter/mongo/case.py,sha256=TS2erNplLCulGoF7zRMr_3eW1MyJd3VL2mOW7XsOZJM,65342
 scout/adapter/mongo/case_events.py,sha256=slHR4XJF9vRuEbuInJKMMAImLF8m7tHWVfGP42fbXr0,26859
 scout/adapter/mongo/case_group.py,sha256=tG8DuO0rNYepV4k0yCGPqssODErc0HMsAypg3mfhcV0,1575
 scout/adapter/mongo/ccv.py,sha256=VIz-Yqzm-1UVPDKvZkBllO4BOKXzvKCXcQUjTtZCHTI,4165
@@ -13,32 +13,32 @@ scout/adapter/mongo/cytoband.py,sha256=2NoIAoQ7RPqcipiSymD2O9qH8lXscP3T5ejquOrD7
 scout/adapter/mongo/disease_terms.py,sha256=4qcQRLuP5xn_RkB2RlNtwCrONmDuWwdlngZrj87BUEo,5637
 scout/adapter/mongo/event.py,sha256=NnURFhS5odOXk7So_gGMHmALPAJM0PWzESI4FC06azE,19842
 scout/adapter/mongo/filter.py,sha256=vzBJS_6vq2z76SH8PszdRR-MNuZ7_RA4VJvnkNYUs7s,8937
-scout/adapter/mongo/hgnc.py,sha256=FUzzj9at62jW-ypII6mWrfeDTdQzW4BWgXg3bWRTqGo,16372
+scout/adapter/mongo/hgnc.py,sha256=P80WdIFkpFDeR6Pa0H-pgeScGrZdCviWVL4rqR5Aqvk,16547
 scout/adapter/mongo/hpo.py,sha256=ps2Pix3sGeea7DenboZVP5j7Vh9WAgX3-sgpbAj0Eck,6871
 scout/adapter/mongo/index.py,sha256=TZPVv6xBWsEtZpBUWp5uhjuPjQMfVss4lZZju49g1Lw,3577
 scout/adapter/mongo/institute.py,sha256=GQmMKb_VzsvWwadp6gXHlSSpcG5ovF1ozdTzvpTFLpA,7025
-scout/adapter/mongo/managed_variant.py,sha256=YFdnIhNVIawVhmlOxHOpe6sJyso0FCGdlXOXyhSWol8,8373
+scout/adapter/mongo/managed_variant.py,sha256=mPbp64nMDwAij8zvBbFGjI3MLbk6CC-OO9RTwtEIi44,8451
 scout/adapter/mongo/matchmaker.py,sha256=amTvFOlUbrt1RmecY_8hPY6bO3j79lc2UbmzlCQcRuk,6378
 scout/adapter/mongo/omics_variant.py,sha256=VdkNG_l6vcr3UF25EixEfvIdMGkSGeNaMjLRhQHS_lc,7521
 scout/adapter/mongo/panel.py,sha256=d1oMEYAiDGybLmlbbf3-fQdCdU0-T7x2XdIUwZGthYk,20031
 scout/adapter/mongo/phenomodel.py,sha256=cypSS8YRzu98Bf1kC0orfrLNn_ZQSYCK8e4mNR5PaPY,2572
-scout/adapter/mongo/query.py,sha256=rF4WjVaH0x1vupJkYMj0c_p8TQbApmZ1t8LgH8MsZwA,34777
+scout/adapter/mongo/query.py,sha256=NA1fM-iawE6nTWP_SFfSBGoV3heV9Eu7Uri0oExwgOw,34865
 scout/adapter/mongo/rank_model.py,sha256=wvDNI4OLf-f7ZYZ_Q_6qi0myxOJCNNJR_-2-_0u2K2M,5712
 scout/adapter/mongo/transcript.py,sha256=3U1qtyxZ1DnrzdBJm_emJXISMYFKJuX_zAKynUt8NMY,7417
 scout/adapter/mongo/user.py,sha256=QoQnRWqi_dV3ZwGzBonEU6Ap9TgMDf2x_C5UIqG0pa0,2569
-scout/adapter/mongo/variant.py,sha256=Mwu-2N2ziXSR4lQEFXegbftH2nTskAWL_vpAdeu-i2M,34926
+scout/adapter/mongo/variant.py,sha256=1vfvspPOOPyXjpiQ-dJdnDa6ExWpas7ZMTCyL6o5cCg,35208
 scout/adapter/mongo/variant_events.py,sha256=yNnMM58P1LbYFw73rWzti6l2zWa_G93ozUTbVkcz4_I,33475
 scout/adapter/mongo/variant_loader.py,sha256=C05StRMFVChopcolPYXFIbh_S-FhYHu4NvBCpiBLOeE,28327
 scout/build/__init__.py,sha256=GUWEaXTpwsJil_KtrXBQJpZIwCQFSgo8NlK49R9IkA8,521
 scout/build/acmg.py,sha256=M21MrrP_dtEyOuu6t-jBDdaqYcHPMLcwJlt9fHG2ycE,1523
-scout/build/case.py,sha256=7Hry6ja0KvVhNQ1ecXy3HuaR7dY2x9O8f8FpYt4P6jo,11404
+scout/build/case.py,sha256=LtYx6zQcCoGCss48qf7uluzTlXVH0Pl-WhqYzkbIcZ8,11510
 scout/build/ccv.py,sha256=cfAWSQ5cSBWURkL9_fPm1Y5aRcTIDOE9ieSWaYLufB4,1660
 scout/build/disease.py,sha256=Zew9AF_z1NbbKcO3uJZ2wgni501SkfnYRgnaCZ4m8FY,2020
 scout/build/hpo.py,sha256=LJBCTq-x09D0CSKcUHB8a6ynuUrVh_7Ia0ooA1BxMys,1207
 scout/build/individual.py,sha256=a2L1NJF11oGaOU9LilWN5gftSyIRfk7H231mF2Y67WU,5232
 scout/build/institute.py,sha256=CZKn-cFbh0cWO2ySoRV_P1nYFizlyvu50LKrtAz-PLo,1330
 scout/build/managed_variant.py,sha256=krcQBc4LLxlnUQwXuV2FxNLiSkMoIkLxQueYFl04Vyo,1666
-scout/build/panel.py,sha256=rWtUqbYWVAMbtmm6qLKq69JiMzOaw4mGuzAx37Rtf3Q,4261
+scout/build/panel.py,sha256=smhtynG_ggNgUyuAGqg_-m1UMnBHhrk2ALutYoNTTec,4273
 scout/build/user.py,sha256=Df_k2H4CxR80yqmgVvl3u3YC9ikr33BLH5fGkxZ3Mlw,942
 scout/build/genes/__init__.py,sha256=AbpHGcgLb-kRsJGnwFEktk7uzpZOCcBY74-YBdrKVGs,1
 scout/build/genes/exon.py,sha256=a0oyW69x0tTImu4rxce5pU3Cb_GLSIdbexU0ex_OH7Q,2256
@@ -126,7 +126,7 @@ scout/commands/view/panels.py,sha256=a0fQcP9-SDPuRYV7aEgIGUCYaMN6V47h6finpcdoomU
 scout/commands/view/transcripts.py,sha256=59WyNNp7zHPJIz9QgzrkoeKaSXTtuLli0VuL8IidEmY,1277
 scout/commands/view/users.py,sha256=MKlmhDYRM7Yf-Trmi1ijEuqsDIUn326bdFADyDs7XYg,832
 scout/constants/__init__.py,sha256=ke7uVYgqn6dqByEQdfLQ1H061yOvaNyt8E-WP84Dgr8,5854
-scout/constants/acmg.py,sha256=hYPzoLUqpuTjGXfIN80Nb1njriesH9oAELu1scp-ByU,18083
+scout/constants/acmg.py,sha256=N9X2sJLbK6g6tDPhW0gYQifImzaowb4F6jfTYUBr-Z0,18717
 scout/constants/case_tags.py,sha256=O-BwEzU36MSpN7qqd-aSvoi4-VDRY8rM5hQ7Jg7DMgs,9447
 scout/constants/ccv.py,sha256=YP82qWCrjv3JB8d2LkUdBlBZolk0uF3nhNmkNgmebiI,9734
 scout/constants/clinvar.py,sha256=nr7KhwMIO_7taNQokRJlpgZfenMlKsdPIMpdOx3TwKY,5594
@@ -134,7 +134,7 @@ scout/constants/clnsig.py,sha256=TSeZjUno2jEvQTenrltZ900ZFYIRNoul_Wm2qRjvpPA,149
 scout/constants/disease_parsing.py,sha256=M9_OgsN88oXwKH_XpxdDma0zuWPRoHFQjL19tzojBPo,686
 scout/constants/file_types.py,sha256=3BU2cw40cHMT5IzEGEF_SsIhgYUbnIlUCRmwmB01fzI,3046
 scout/constants/filters.py,sha256=1bcj-z7__yv5eQpjB60wqSHZ3U5U0CVyNbcYT-Wn-vc,957
-scout/constants/gene_tags.py,sha256=pRRsjn9zYGR3nLFKxe1gOYqWm4uQbpfxYzfRxcptxqA,3856
+scout/constants/gene_tags.py,sha256=CpUH13UOVZrYGXTKXS667u0So9j1A4Ig4KNGYdrDtLk,4513
 scout/constants/igv_tracks.py,sha256=NbBBnM3s1S8cJM_S36qi7SU2ACW_lJVS6EP2W0kCTIQ,4697
 scout/constants/indexes.py,sha256=mCj_ih9Sv7Qv4DrzLRH30EQZ-Tgyn_Sf6NYapCOlMOc,5793
 scout/constants/panels.py,sha256=X38XGPlNgOGhXHt5mSpryOS7gMeP-tUD1t1WIT2G5wM,785
@@ -163,8 +163,8 @@ scout/demo/643594.ped_check.csv,sha256=36HoP13haqQerTEHuJF4R2r6Vh2AQilS1NTr7X6ao
 scout/demo/643594.peddy.ped,sha256=msfhM3u_5hK_zjHhMas5Ns_KREllRyHN3kdTIVl5J-c,421
 scout/demo/643594.research.SV.vcf.gz,sha256=MBB0y_RVKGaoAuILhHue8B1CX8ZQog53O1zRqSK08vg,11927
 scout/demo/643594.research.SV.vcf.gz.tbi,sha256=_4-Oz7kICi7XdCh8T0g3y-iorJbK3i0ieSu5DUdE-1s,1284
-scout/demo/643594.research.mei.vcf.gz,sha256=zTXjO-OoDtjLdRpVfyZIkUzyxFvRGBuHURcPku8v3Uo,2031944
-scout/demo/643594.research.mei.vcf.gz.tbi,sha256=N3j4yvl207zv-yLeMWuaFwtMJbwjiSxTTpE0NIaWyts,160182
+scout/demo/643594.research.mei.vcf.gz,sha256=5QdZ0CJIEBIgmxgsn0o1eqd2yzsWSR0G3ZoPAFTx_JM,21068
+scout/demo/643594.research.mei.vcf.gz.tbi,sha256=VLNUA2ht23ODbqAcqIpG0f0uWtYCLw9bGmLyY66jZzU,1417
 scout/demo/643594.research.vcf.gz,sha256=ZutsU-JBbTyxPED_WsBPkVw31Ua-3WhsLL-w-iK1CBs,440072
 scout/demo/643594.research.vcf.gz.tbi,sha256=SvYOfbwZKobAhBufsxkkQvDVVuAvBAAQcvwQmbLWY5g,7702
 scout/demo/643594.sex_check.csv,sha256=Nwr8cpaJ1BNuTvbdpQMUWa6IDyND0d6J6WI-C65LA7Y,239
@@ -187,7 +187,7 @@ scout/demo/ADM1059A2.test.cgh,sha256=29YOnGgPB3wxWwxVwf_mCLrhZ4Cf5hqVxw_DUggBe7Y
 scout/demo/ADM1059A3.d4,sha256=Da7zycL1LjrzhX1171G1sJTedyOLUyYMc_e5EAhI4eQ,961059
 scout/demo/ADM1059A3.test.cgh,sha256=29YOnGgPB3wxWwxVwf_mCLrhZ4Cf5hqVxw_DUggBe7Y,29
 scout/demo/__init__.py,sha256=ggXVz3_6ZUAzIZtuaK8kz3C6BuxSfaQ56PAzinJcYoI,2061
-scout/demo/cancer.load_config.yaml,sha256=1wz9eTRI54lu4TERQ3WJbbkEhrdLHhm1X_IMktXZX2M,1401
+scout/demo/cancer.load_config.yaml,sha256=T4v2xvUA5vv3kZ8HT_7uQFq20xG1qq4YguVcTdqyKzE,1373
 scout/demo/cancer_cnv_report.pdf,sha256=_2_nj7Hc9SdE_mwDBqoquOFTLzZq5URnslADRMFjOm4,1910043
 scout/demo/cancer_coverage_qc_report.html,sha256=BlE_d6i68fK6VPv1wCyEmJy3qGSU67-in5Y1BGustU8,6914
 scout/demo/cancer_test.ped,sha256=NN_IGuCTulYXQ18u1eFcvj_AwTnlSpu9eHurQZfkoys,36
@@ -211,7 +211,7 @@ scout/demo/panelapp_panels_reduced.json,sha256=dwvRRwfIIFq6H4ze0wyOIllN-LSreK5jh
 scout/demo/reduced_mt.bam,sha256=DlC0lBAQrqbNrRSJ27MrOVmF5_bjRINmHwMn45a0-_c,492247
 scout/demo/reduced_mt.bam.bai,sha256=S8k17QiK9jkLHM3usZP-Rsc5xGe5kvHfbMbB3-KKIRM,808
 scout/demo/reference_info.yaml,sha256=-9kgT14q-IY3xzz9iPSoV22hR7u89xOq4FJMEOqb3-0,7526
-scout/demo/rnafusion.load_config.yaml,sha256=7a8Tox78q4RiioeTXivioheexrmPL4W9G3SCwNUlo_0,540
+scout/demo/rnafusion.load_config.yaml,sha256=nbx-uEnEY4wA0ro8mJI4cRHk--h3Tbtj0sJD7BYO6Jk,562
 scout/demo/rnafusion_inspector_example.html,sha256=rDxfsZR4vYyhxD_gzA9pKPpposOcHe0tqq7UpzP6Dbo,1547345
 scout/demo/rnafusion_report_example.html,sha256=Ktd1UuW41pNYI7qT84cyYconJJQJxx7AkkAD3767tsc,1755020
 scout/demo/scout_example_tumor_only.SV.CNV.sorted.vcf.gz,sha256=lABVdx4zlpUuP2uL92ZYsHIiQNZNl35bGXlUECyiLGE,3443
@@ -375,7 +375,7 @@ scout/load/hgnc_gene.py,sha256=GcSQ01CioYIshAzXAv4msIGDPjTjGBBPBnLX2GvaZJ4,4507
 scout/load/hpo.py,sha256=ZWYjV9j6OfpI-ZZuhTQVEs_xgLa7ST2KuvYLW6ku0PY,2474
 scout/load/institute.py,sha256=etmZ0CZRHOVi3f9R-wn5BK1pZPhtZwq2QYbh2RXXxDc,625
 scout/load/panel.py,sha256=MY5M7-lDzVXt5RJH87N28TB7awdM6s-SoawholTl2GM,4776
-scout/load/panelapp.py,sha256=_Ptf4hQYjJtntoBTVeeLG_OfVONt-BtLtAtRV8TM9B8,5735
+scout/load/panelapp.py,sha256=gE1WjT1XZQV_Pom15Fj1poYkYiQK75z_bBm9SN0d-Ow,5290
 scout/load/report.py,sha256=TJvblks6Dp5-UDflWRTa8b3fe-A4bT4QnWT2yZLhfLA,820
 scout/load/setup.py,sha256=Xu-m59rJW5bF6Agf6XdiEo_Ik4ZAFfN0tF2FjLIMYAY,8218
 scout/load/transcript.py,sha256=mk0Da7GWwqLVRp2xRD9mlzqaomH9R-TL2aKCJx4fEA8,4632
@@ -398,13 +398,13 @@ scout/models/phenotype_term.py,sha256=jY7dbfPzgE14M1gWqifm5YKkwMlrtfFa_WBHMT1_og
 scout/models/user.py,sha256=oercrjpf9fLomqAcN0Fv1BL_XPjOrS_vchURo0RP7es,1134
 scout/models/case/__init__.py,sha256=Sqczn7Wm9KYZtPGAHCvwX_6j9vlaK-0myJtSDlS-448,121
 scout/models/case/case.py,sha256=Wu2D6IZKkFXLeF7emcBr7n1HQ7Mj9rO-cN-8T9rhkSU,5282
-scout/models/case/case_loading_models.py,sha256=GNeXZFrJ_1ISSxqO2VpKXazCLksLsPbTNL67csIIwQQ,21568
+scout/models/case/case_loading_models.py,sha256=Fs1jxbaHBsxC3l3_ECHFczukWFWQwPhigXW4035rZS8,21670
 scout/models/variant/__init__.py,sha256=H-IZ2hSTSVS28S8FZzA8j2Cyu1PHQFXyMWJFtCucPAk,40
 scout/models/variant/gene.py,sha256=98CG_JcAklGGFIrUulf1_olQalV65kXQO-gOf7VQZ0A,1095
 scout/models/variant/transcript.py,sha256=rfflEbTs7Bn4HDENqrxtGopQ_0HKnrVLLyBcrj4NpwM,1720
 scout/models/variant/variant.py,sha256=SppFVdCYrlZiMBce38YrAykYZZ-0el3DzrArJHtC1yU,4473
 scout/parse/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-scout/parse/case.py,sha256=-sGKWYWcskMagrDpEoeCIAJacwCR2feC8SwWvT0FJVw,11577
+scout/parse/case.py,sha256=P7ya8LaV5G_R-5AOwPU5mMbGdc1sG7Ojt16JXTgrpKo,11690
 scout/parse/cytoband.py,sha256=7flY3b_wegupHHBLRcs4KyM1ns-uzuTfVHm4CycnupE,1055
 scout/parse/disease_terms.py,sha256=-JIm4GWEvqg9nmWehK18mlIQ-N5nZhT2u5pbfDRXoxE,7437
 scout/parse/ensembl.py,sha256=nnqOVtLgWh9wbtHnzGIidnNIvRoOp2bTct5OuAFSSB0,10618
@@ -414,10 +414,10 @@ scout/parse/hpo_mappings.py,sha256=UJY38iLmpJFnZ9FuRaNIGhNQnTx7_WASxr9mlEnhvHE,2
 scout/parse/hpo_terms.py,sha256=ZJCKFD0rV3jiCuoI8Gm1WNTiaOSRRoKOhZ1bYnqwY6I,5732
 scout/parse/matchmaker.py,sha256=eeAfyB8ObLIKveUL50i3YTBeZphqYhMCiz-4t2-dATI,9852
 scout/parse/mitodel.py,sha256=3uvEXI9v9wIw97NUL7gqLLxHay0mpQpDgKaIxUbIyrE,803
-scout/parse/omim.py,sha256=nrCaFZgjUKZo9Jfku2-jcNjdsIYHsvjdWcydz4nCpZA,12465
+scout/parse/omim.py,sha256=Qgzx3xoQ-HoVrvjE9QlbjlKgNPBb9kF028F5foko0ow,12428
 scout/parse/orpha.py,sha256=5u9xqGpAn8vgoJ0uVqbYiqQBiNfBwXOiTzX16kAnmFU,4392
 scout/parse/panel.py,sha256=J28e_MkKeB5r4hOutb3qimxUT7G5yg8x1Ca4bAs0I_c,9577
-scout/parse/panelapp.py,sha256=Idz6cGvQnyI-nn6yCTc6EGSRp1gX-CXN6Y4ayAee-_A,4076
+scout/parse/panelapp.py,sha256=xXU2QYTVEr9ksUBCqzdjfGqC3w95vAwrlk9qbZSrq1k,3112
 scout/parse/peddy.py,sha256=uM49GaZMtr8waCsZDvCHDS5JDQ43JUlhdWh9C7f7ZvU,5418
 scout/parse/smn.py,sha256=iOK1N8iYm9dFigsKtWq0Y0ZCa1CH29s9zeR_tH0bPuc,1153
 scout/parse/omics_variant/__init__.py,sha256=vq8Ew4_Xr2vPy_3Fg0eTpPWsQpWnUXYBhjRndBUvtTw,422
@@ -425,7 +425,7 @@ scout/parse/omics_variant/drop.py,sha256=SD98E9ksPPv62SFUuR4TfZHVIIIy1RXZRdMhm5H
 scout/parse/variant/__init__.py,sha256=5yqCQlAYMqosRabdipFUXqopSMBN4X6jwpNiKiYKlsE,35
 scout/parse/variant/callers.py,sha256=eA5o4Ov_v5ds__4xpif1ttj5yk2nK4GXwhYSWL4NTDg,5709
 scout/parse/variant/clnsig.py,sha256=dFIvV29cvMOFw7hSgbjBEXzWV5YVKpSGQqgLuHbMePk,5421
-scout/parse/variant/compound.py,sha256=zeRHBwobusCW-ylgurHrnPsc-edeJHeXj6xjXkrbFt8,1493
+scout/parse/variant/compound.py,sha256=6M60DrZk8A7-X3ICGEAVpWyjLC_UgXcK1zd_o7Cuemg,1502
 scout/parse/variant/conservation.py,sha256=8eHXy57g6ng0eMo38LsIcQ8w_H5mpBSfiMuaXF7aBi4,2949
 scout/parse/variant/coordinates.py,sha256=CU-EyD8NVgTbyIdmYDO3k-zVaMN1EDONjorDwyUSnXU,4742
 scout/parse/variant/deleteriousness.py,sha256=zeFzx218GL-5pKniyci7MVHj3a1cep4nmvoSg7u0ogA,541
@@ -444,10 +444,10 @@ scout/resources/cytoBand_hg19.txt.gz,sha256=pheUD5b9NlVuvwwnbKwDc2FG80Yg70gvPxVX
 scout/resources/cytoBand_hg38.txt.gz,sha256=sqSVmvPlktQ-0hTiTapJM-5UgyV6xDoYZuTF0kPuETs,6105
 scout/resources/custom_igv_tracks/mane.bb,sha256=flEexDxHmbX7IwwrMM0P5DWOxcSCjmHxGNlyg_WqElQ,3519360
 scout/server/__init__.py,sha256=iwhKnzeBJLKxpRVjvzwiRE63_zNpIBfaKLITauVph-0,24
-scout/server/app.py,sha256=70YdN9eWL1ySEYkuAHKOk_WA4Fm5dcIwtIZEcEf-xA0,10836
+scout/server/app.py,sha256=S29_mBkNFWr7JDHB0I3JEyzdNwn7Qw28mKV7X5VMoN0,11254
 scout/server/auto.py,sha256=8B6GwfOaUChkTLuLgYQDFMWlxGuHkEegF1argH2G2Ik,401
 scout/server/config.py,sha256=BFx6ix8D3KM90FqmaHLxv_feudO2kN2CkX1UWBGTjXE,5923
-scout/server/links.py,sha256=f2h_zUFt4Tm_383ZmdIGsA6mUVQbpQmJ199ZTzUWemE,28115
+scout/server/links.py,sha256=rJTHO4G40uLiWCtPr2n0Q0pBMtSOhjjh7F41jBoufM4,27656
 scout/server/utils.py,sha256=d1fGdSwo-XjNHVjHd-uT3mGmUJ8yYB6weT7VgHo9nxM,12592
 scout/server/blueprints/__init__.py,sha256=iwhKnzeBJLKxpRVjvzwiRE63_zNpIBfaKLITauVph-0,24
 scout/server/blueprints/alignviewers/__init__.py,sha256=XMVed2ekVUAvroqENDHSr2pwM8otqau8ZA-rbH1T2U8,59
@@ -460,7 +460,7 @@ scout/server/blueprints/alignviewers/templates/alignviewers/utils.html,sha256=x2
 scout/server/blueprints/api/__init__.py,sha256=HR6HjS7ot1K_8Lt5eQdNT154z_FCdHGSigy8r2LpNCI,26
 scout/server/blueprints/api/views.py,sha256=pbl78wfhrm1T8JmiJDYF3BbTbfFrlF-hQRbuv2GWI0s,3729
 scout/server/blueprints/cases/__init__.py,sha256=_c17kPFITFYcIVphF4V9bf0PZBer8bU3rtVWQnljKDU,52
-scout/server/blueprints/cases/controllers.py,sha256=Nn2MrlqAHzDfm8RSkjrWpeCD4W7DoPp_8Gm8Eu4l44Q,54362
+scout/server/blueprints/cases/controllers.py,sha256=08QudunYV7deJ2YYTa3Y4TxJ6zLaE8OxXdWHpJWAAPA,55825
 scout/server/blueprints/cases/views.py,sha256=MQDOnLuywAQkVBgYaZAbaj9f6tps18bpo4nDFm77S4s,43165
 scout/server/blueprints/cases/static/case_images.js,sha256=pb_gG7DNQc-1lADqSII8YvjBwmHyeQWYVtuu2jyrTlU,14997
 scout/server/blueprints/cases/static/case_styles.css,sha256=2Pgc8pFf9DR5HM1sTdAjaRWhjL-bK5bsQnLpH54HZak,541
@@ -468,11 +468,11 @@ scout/server/blueprints/cases/static/edit_pedigree.js,sha256=ntC5fie7SsOYJau8qkk
 scout/server/blueprints/cases/static/madeline.js,sha256=KHxKMBVlYVJODNu5QkY9hhsGkDJNoaCoCZZ0DRu0YN0,1175
 scout/server/blueprints/cases/templates/cases/case.html,sha256=9Fcn-OFA1yIHchD0PjDs7-Y8I7Qqr8o6cavN0eOi5rI,37183
 scout/server/blueprints/cases/templates/cases/case_bionano.html,sha256=PLoRv7hDJcHwxhi-0hC9fQSZc7V_aUYHBhhQqcn_2G8,5946
-scout/server/blueprints/cases/templates/cases/case_report.html,sha256=BFEJdsIgPCBQdZUqi7XyXgh_j0kMaYbxfVvrzh1wX8w,65839
+scout/server/blueprints/cases/templates/cases/case_report.html,sha256=lum4fIh6ur_bdnMeYLFGXht0LaF2t-T1StAk8F0cZ5o,67481
 scout/server/blueprints/cases/templates/cases/case_sma.html,sha256=99rmRyDXFXjooB52TI5_ebJKv1ZAJbVXEw4deHfSVMA,7285
 scout/server/blueprints/cases/templates/cases/case_tabular_view.html,sha256=ko-LDUKmIoTazMZ2nFWvPEZsgObU07RwqIkDYFjokoY,4317
 scout/server/blueprints/cases/templates/cases/chanjo2_form.html,sha256=5Wmk7DM8LI3MynqzxeTzAr_EoEBwVVo31djcI5ZlTdo,2164
-scout/server/blueprints/cases/templates/cases/collapsible_actionbar.html,sha256=H45WZK2qVY47wgttdASjRooRKFs2wQXAnH18u80hRfg,30895
+scout/server/blueprints/cases/templates/cases/collapsible_actionbar.html,sha256=Zk-ezZ_Ae7gtDw2pDCvyXk-iFoPcD5y3h1THLPKPgk8,31404
 scout/server/blueprints/cases/templates/cases/diseases.html,sha256=ETTQI0Nrl_v86NoX9mFZcvWD-qM1IJoqPmHPWn__Grw,1677
 scout/server/blueprints/cases/templates/cases/gene_panel.html,sha256=lkC_Piqaq-paYr4GUCwQaR8EgGOUXDMoW5sPLDW7yzg,11628
 scout/server/blueprints/cases/templates/cases/index.html,sha256=y91d7yI64Fbz7wS8CSsi3vcCo6rFmS0mnstUipnVHUQ,1136
@@ -482,12 +482,12 @@ scout/server/blueprints/cases/templates/cases/matchmaker.html,sha256=kPYnmcZJ1gm
 scout/server/blueprints/cases/templates/cases/phenotype.html,sha256=7vz5XPUExD6vc-wdijLKnPzaOFm9mQxOZ_ITAL3y7U8,16420
 scout/server/blueprints/cases/templates/cases/utils.html,sha256=gHcxf3DOGcJJZMfjKY4NgvU_tjta5OnyWrKZy9pfGyY,35981
 scout/server/blueprints/clinvar/__init__.py,sha256=BV3aH2AbiA2WWrUEMbGd0H9MefFd2eTsRE9ShywbzpI,30
-scout/server/blueprints/clinvar/controllers.py,sha256=lCrVlokjnSURvsYkm6sTMxrZOL1Xj3VQAWbYr1o_mEY,24251
+scout/server/blueprints/clinvar/controllers.py,sha256=usIiPsk-Ku_mUq975LRpxgibnD6wtupmveVE_RcERkk,24252
 scout/server/blueprints/clinvar/form.py,sha256=2h42YJzaOtsdEglxqt7F1i2ncjSU_IHNt-m4QOJytK4,5148
-scout/server/blueprints/clinvar/views.py,sha256=hPyTJA7Qy6QOL-ENSG1N0atnQXuYCb-iiO8fuNDjJns,6036
+scout/server/blueprints/clinvar/views.py,sha256=nXZMPjldV_wuvj9k5_hsfkVGCvFlhT8fssS-tMlVXYk,5710
 scout/server/blueprints/clinvar/static/form_style.css,sha256=Tro2w0Su9st2ZRpt8PjF7qXYet-0n6Eyol4oh94JafU,4073
 scout/server/blueprints/clinvar/templates/clinvar/clinvar_howto.html,sha256=phFsRl6Hv94sy4GueBN0MXYbQsW6qmR1NoH-3Iwt2zs,4852
-scout/server/blueprints/clinvar/templates/clinvar/clinvar_submissions.html,sha256=NqR66lFN-Svm0IC0FZTts1oPK8S80t69SRSgT-727LA,18185
+scout/server/blueprints/clinvar/templates/clinvar/clinvar_submissions.html,sha256=zJJehPFmxwL6tTChYQBvtOKn3Q2v6RD8pBLiJF6jHaQ,18095
 scout/server/blueprints/clinvar/templates/clinvar/multistep_add_variant.html,sha256=zfU_dPLtjiX8NE7IGTfABt9q46Li8rWFXyyMSvc_U-E,32017
 scout/server/blueprints/dashboard/__init__.py,sha256=9YTjGeFexyEbl4P-gs7j8VEjyhnVwHZFfz57eTtod1M,69
 scout/server/blueprints/dashboard/controllers.py,sha256=x6EWKROskF4iyZ5_hAgL7CWp1X3CXHp-7v0JVsDHKZU,9612
@@ -540,9 +540,9 @@ scout/server/blueprints/login/static/superintendent.svg,sha256=fEjo8KtKh56ge7jWA
 scout/server/blueprints/login/templates/login/users.html,sha256=ClMOKE7jlSAWHa5d1bXb5RKrE0kmCZETklFYj2CDo98,1858
 scout/server/blueprints/managed_variants/__init__.py,sha256=wpDezF_TYKSRkrUGX_aWxdpITMvKvnNqWQtuy6YV1bI,63
 scout/server/blueprints/managed_variants/controllers.py,sha256=HQ9jkTMzVEBLEmswXE7lg8Zj05ENshZeirzIpxm52lk,7281
-scout/server/blueprints/managed_variants/forms.py,sha256=cxpr4Xunvay7_bBy85FjURo869hWGlW1SbsIUTWhPeU,2208
+scout/server/blueprints/managed_variants/forms.py,sha256=DmG0KuY82R1pRIUC7niJFQqFuZCDB4x-vj6635hFliQ,2590
 scout/server/blueprints/managed_variants/views.py,sha256=wHOClPy2ZCIQvandia90kG6I6IPhxKVOiAnG4esXh-0,2473
-scout/server/blueprints/managed_variants/templates/managed_variants/managed_variants.html,sha256=gE1eP1E1A20z7UUuf36onLU75537rrNlR-P9pbwwtnI,17295
+scout/server/blueprints/managed_variants/templates/managed_variants/managed_variants.html,sha256=jrhcdUODlhWHiAgVeHowJ0c0wWDYFIU5iMO1oWjsG-A,17311
 scout/server/blueprints/omics_variants/__init__.py,sha256=8UVXrChArhIvMxtgUcG-udvmlTn56q41iy-naOZw5us,37
 scout/server/blueprints/omics_variants/controllers.py,sha256=AnM70stvLniJIU3pFUX-InNjuT-7K0RpuAEYa7vM-jw,3912
 scout/server/blueprints/omics_variants/views.py,sha256=P-mo2S1RBGYxsNCFqSTNQNLvqiH9r6_AoZgsOWpopPE,3817
@@ -607,34 +607,34 @@ scout/server/blueprints/variant/__init__.py,sha256=SlD8-Aoj9Jq9aVTJjtFfsu-0sUVfk
 scout/server/blueprints/variant/controllers.py,sha256=dnx5YFVF62V2kAspfGpw0Mr0qUH1VoU1EBTP1hvIlZM,29691
 scout/server/blueprints/variant/utils.py,sha256=BMezzz9Y9ZoGMaLKRbQopJUkWWUo1M9Xi-pw82Vdm4k,25079
 scout/server/blueprints/variant/verification_controllers.py,sha256=eKzP222e7xuFOaQaI9MLOrD9RWtI8uGB1cJYbcXLzF0,10972
-scout/server/blueprints/variant/views.py,sha256=Y-rjeY37tDFCKFPGDPVbqw4bq0_-zANosZC6nf9Ze7Q,18958
+scout/server/blueprints/variant/views.py,sha256=82gYXNREV17l8XTWCaptrv5lDfJOG4kiqAaX5IN62Do,19000
 scout/server/blueprints/variant/templates/variant/acmg.html,sha256=Fk4vL1Pu4G3wZsfiUO2jBlFLFoRgFAeqChlIyas5Bb4,8758
 scout/server/blueprints/variant/templates/variant/buttons.html,sha256=4vlnvJKhr28qqzevlecAIvumvOgLZhGyPYQm68AnKzU,7608
-scout/server/blueprints/variant/templates/variant/cancer-variant.html,sha256=ZUnZYURdlLfiJ1Ryok5oRVa96bvBErhIgym2VlWlryQ,14001
+scout/server/blueprints/variant/templates/variant/cancer-variant.html,sha256=vBtPp_jvMeRlwQ71TjGNdG8eCFU27ylFExza5_kJiqg,14043
 scout/server/blueprints/variant/templates/variant/ccv.html,sha256=X33qKY1EvzoLldko1hK5tgE__xxNU54vq6fRzFew6Vc,8671
-scout/server/blueprints/variant/templates/variant/components.html,sha256=tiSaaa2Qdl14cdJv1kjpq0djL9PlvErtz_tnFxg9-Bw,24909
+scout/server/blueprints/variant/templates/variant/components.html,sha256=dmKxuSrJgvKRtRAzXMN9W2-uZwsLwzde0W4CHqnBb-Q,26185
 scout/server/blueprints/variant/templates/variant/gene_disease_relations.html,sha256=1U77akxqbb4AS2GSyvFwGD6D7rP68L3KXKLUmP73664,7256
 scout/server/blueprints/variant/templates/variant/rank_score_results.html,sha256=32RfBrpZ_J-1WYE01Bdd5IC9i1MAzXT7GF27OlElk94,2040
 scout/server/blueprints/variant/templates/variant/sanger.html,sha256=0kVnscTw3KUwjR4QOEuNJMOK9eADGEn9qGNtGx2ST7Y,4507
 scout/server/blueprints/variant/templates/variant/str-variant-reviewer.html,sha256=p0nWqo71GJ8ACLEzXuZbJAzDXoCHZLvH6f7yLi3JslI,2208
-scout/server/blueprints/variant/templates/variant/sv-variant.html,sha256=8199JLlkuNOLI88hSwgtPxKjk9SDyhNS-WJR1S7mnFs,16978
+scout/server/blueprints/variant/templates/variant/sv-variant.html,sha256=4FBomOYYEDQWOl6jvW4Ffd6PQhqmPPKDA23wzMlZ6zI,16778
 scout/server/blueprints/variant/templates/variant/tx_overview.html,sha256=EXLBDh_SgNVEO7MPMjlmfO6MDhtDcj0JyvZdRgxbwSM,6756
 scout/server/blueprints/variant/templates/variant/utils.html,sha256=lF-w3400plEn0gVpHG-9k7N9L_p1U-PFGitcT_YlZw8,25414
 scout/server/blueprints/variant/templates/variant/variant.html,sha256=JA0jI1ITvKamJY88U6-uBXYrHRZa3H2oyBUROtX9TKw,17874
-scout/server/blueprints/variant/templates/variant/variant_details.html,sha256=KAdrLo8UTxO1Nr5ggfdn663E7xMq1rK0A2PrKXCJGjM,21049
+scout/server/blueprints/variant/templates/variant/variant_details.html,sha256=FeuANKP5gL9SWwYnC-4-dXyZOgy0Nq6FXAjED3nuqjI,21097
 scout/server/blueprints/variants/__init__.py,sha256=W1KCz9kEbVlNO0o3NvLitYLQoP_3JSJ5KSjhpcjlUBQ,55
 scout/server/blueprints/variants/controllers.py,sha256=ILJt2Jl9ShkePgZI1Grff-_gcxlZFzQ8zoQ86iZPxOI,74205
-scout/server/blueprints/variants/forms.py,sha256=w4Woeek6gpZfPM_9e1E_n-gpVvNxXPU_ria7cvP1HSo,10750
+scout/server/blueprints/variants/forms.py,sha256=nxsZGHOr2M9GyQob8_8CK5qFgPgxZ3wBdFT69PkVVJc,11447
 scout/server/blueprints/variants/utils.py,sha256=ifFBoyigx0A5KPE4iz9NSpyuUeF1bElrb4ohQLD2GlU,919
 scout/server/blueprints/variants/views.py,sha256=skUGpZyRDzW4BEDIqWKajHBLF3qBUSP-UYSZYxbv3l8,28895
 scout/server/blueprints/variants/static/form_scripts.js,sha256=o3GCboaesA9Sm1HgejS_yQwt0I-NTkvcl56jiBdLqZs,8319
 scout/server/blueprints/variants/templates/variants/cancer-sv-variants.html,sha256=QlGmUEdUQ7gCq7tMMUFAlGqqC9jFB78Q0h6tSp3QUas,7271
-scout/server/blueprints/variants/templates/variants/cancer-variants.html,sha256=LnybOzNu4RkbighdIcV6okJwQWiO5ixOhTev_-QaQII,9611
+scout/server/blueprints/variants/templates/variants/cancer-variants.html,sha256=nqJ1q23arq4yJokMJpsyf8-ayzZkD2zgwH7j-Y9bpfE,9688
 scout/server/blueprints/variants/templates/variants/components.html,sha256=PGtcPGVbd3gcdG_6ozA66LDo3ZJ8VoehaDMUZjwyA5Q,17431
 scout/server/blueprints/variants/templates/variants/fusion-variants.html,sha256=XGaLgWobzeFHwyQLXr_Yq9THssf8tGU91VbFKdGOFBg,4801
 scout/server/blueprints/variants/templates/variants/indicators.html,sha256=5aSXytiWvaU87cqcR9GcB7U5jP8t-PVnor8FpKLl_k0,4847
 scout/server/blueprints/variants/templates/variants/mei-variants.html,sha256=2Tb0vfzM--kJa5mVbT7L32h4E8nKYRSb245g6O5JIUU,5860
-scout/server/blueprints/variants/templates/variants/str-variants.html,sha256=bjjeyoEO1aScqIDLtCh3xexZfvf1906yusPGJTyeNLU,10644
+scout/server/blueprints/variants/templates/variants/str-variants.html,sha256=n424D8xV76bCKDSFzzIsWfFAoU2dAYE-PPZyTtQeMdM,10924
 scout/server/blueprints/variants/templates/variants/sv-variants.html,sha256=fRDnB9wXago2OB2mthp0rD_Es4kxnj9YKRlOKCGVW3s,6407
 scout/server/blueprints/variants/templates/variants/utils.html,sha256=MNDc2JwumU9ukISizSAraxIY06rHXR2Ze32RNnDEBI4,50042
 scout/server/blueprints/variants/templates/variants/variants.html,sha256=KnCcsA1VaRdsbRCCw9Rg0TJTUvq03X9S24QgCqVToUk,9328
@@ -643,7 +643,7 @@ scout/server/extensions/beacon_extension.py,sha256=YDXQQl5kFcsA4OFHDMVurIKLw_3Gl
 scout/server/extensions/bionano_extension.py,sha256=0rWPLMSCRP8uK4_yozo6HTPR6V-oITF492vrGA3wSj0,7129
 scout/server/extensions/chanjo2_extension.py,sha256=ZKCIv8muR9bzCV0_rM277ePvxdWC3wuPIwY4VppH7lY,1530
 scout/server/extensions/chanjo_extension.py,sha256=JtKAgT6ASnCcKYbgKMWGwflISLzHuyDKpcyljzCV_aY,4045
-scout/server/extensions/clinvar_extension.py,sha256=w1fOzGKRhxmIlZkAqqd_rdGD49qE_nn-tgZsEMTrZNw,3870
+scout/server/extensions/clinvar_extension.py,sha256=X3LsJZ4XL8hr8FyqhW1Zn4OmXEG0_edCZRHtWhTuLVk,6332
 scout/server/extensions/gens_extension.py,sha256=KOF-pP4DiRVQkygthAq6XCHnZwAGHo1kjIxmvW7ItYI,1003
 scout/server/extensions/ldap_extension.py,sha256=nVgJ6YhSyvpg8J4bSYzJwoEvKhP0faWazt3Xk0ixE2U,2746
 scout/server/extensions/loqus_extension.py,sha256=uiqUXQ7Q7DCj6C20TKgL8yLu9DXov95vrJfhq0tvbTM,12602
@@ -666,9 +666,9 @@ scout/server/translations/sv/LC_MESSAGES/messages.po,sha256=Wp7Mx4LoiFNtzsV1tpAo
 scout/update/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 scout/update/panel.py,sha256=4z-vQ7GVIJXtlIub9pubFcQ-I9mLX5fRXKNPBdpuhJw,1649
 scout/utils/__init__.py,sha256=DHCMH05dxkyD7m9QSs0WXsQQPgVRFQ9XvyNeNpHjjvg,74
-scout/utils/acmg.py,sha256=IkWWmHxc0YvoSurzXimKkH_Vf8C0bncywVUVu8m-YlY,11539
+scout/utils/acmg.py,sha256=b2WLE2-s0pijXWBdwfrGE3SFogYMDoeVVKQd9d7pBQA,11576
 scout/utils/algorithms.py,sha256=w--NauXbQohZis7obr39a8bS57C4NRelYXn79V7m1dU,800
-scout/utils/ccv.py,sha256=85lY7uSjHg3VAfWOfrx9jnaDUQXSa5hDQcRIqZ_Ikas,6025
+scout/utils/ccv.py,sha256=WhVyIzNW0ttfT4ZegOPGFR1xqqjRFNgnJSY7DPfXGNQ,5605
 scout/utils/convert.py,sha256=asrsis3zkt9jXzseRmCqSa4_t1UT73HPPQRW-DKDdqE,1794
 scout/utils/coordinates.py,sha256=n8WUFn9zohXfjxgFGryyg6mzdl0zBG8uVCdyjhizSpM,609
 scout/utils/date.py,sha256=GUALqEIgWtbopqC9wJnVKmVm5FRq111iz4RfojUIfG0,1334
@@ -678,13 +678,13 @@ scout/utils/ensembl_rest_clients.py,sha256=of6CXQHBnwH4ji5URAZcEqVTebxduLs13lBWv
 scout/utils/gene.py,sha256=uzIGrPBfOkhRGGR9iTSYa00w6PWijjpzSAWRo54wixM,1430
 scout/utils/handle.py,sha256=tLjinHNLADa3IJSxMp_HJe9cbiMlPTsfky4hujplPqU,327
 scout/utils/hgvs.py,sha256=P5i3fIK8WZZlUnjZ8XpMDUG5KDXRCDSOs55DfK5acsc,898
-scout/utils/link.py,sha256=RuCUwnOtGDf9ACaC64_1FqWyWDaBv7dqNEGjmCq59kk,9001
+scout/utils/link.py,sha256=HpQvwu0hmuCrs7TcAExLmOzEGr3glWuu8iaW0ao5pEA,9011
 scout/utils/md5.py,sha256=KkgdxOf7xbF9AF40ZjQKCgWaxFWJ9tp9RKjd8SU6IoA,649
 scout/utils/scout_requests.py,sha256=lgPumNI_EikBZR1m9ztZI_mZAfV29y1KGoiBv9kejzQ,12797
 scout/utils/sort.py,sha256=1AcbeZ6vdt_UXM3BLDBa3aQmN4qxrqtskxwD19oBhvw,756
 scout/utils/track_resources.py,sha256=eUjSEe-Ff8BIb4BHPC_COkJocQO2PaWueiPz1GAuiwY,2614
-scout_browser-4.94.1.dist-info/METADATA,sha256=GokLVy4fCW8zv-7QwERH1vldMGvaOn0iIstTGd4KoGA,15642
-scout_browser-4.94.1.dist-info/WHEEL,sha256=qtCwoSJWgHk21S1Kb4ihdzI2rlJ1ZKaIurTj_ngOhyQ,87
-scout_browser-4.94.1.dist-info/entry_points.txt,sha256=q_mxFwbMFTwXRDDIRVcqKram2ubMVmvs3CSNvZri1nY,45
-scout_browser-4.94.1.dist-info/licenses/LICENSE,sha256=TM1Y9Cqbwk55JVfxD-_bpGLtZQAeN9RovQlqHK6eOTY,1485
-scout_browser-4.94.1.dist-info/RECORD,,
+scout_browser-4.96.0.dist-info/METADATA,sha256=Jipku15t2ek-OH7TQfUdgEIM1yieNz1hpRoOrcBkr-U,15642
+scout_browser-4.96.0.dist-info/WHEEL,sha256=qtCwoSJWgHk21S1Kb4ihdzI2rlJ1ZKaIurTj_ngOhyQ,87
+scout_browser-4.96.0.dist-info/entry_points.txt,sha256=q_mxFwbMFTwXRDDIRVcqKram2ubMVmvs3CSNvZri1nY,45
+scout_browser-4.96.0.dist-info/licenses/LICENSE,sha256=TM1Y9Cqbwk55JVfxD-_bpGLtZQAeN9RovQlqHK6eOTY,1485
+scout_browser-4.96.0.dist-info/RECORD,,