scout-browser 4.93.1__py3-none-any.whl → 4.95.0__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- scout/adapter/mongo/base.py +0 -0
- scout/adapter/mongo/hgnc.py +5 -1
- scout/adapter/mongo/managed_variant.py +4 -2
- scout/adapter/mongo/query.py +91 -54
- scout/adapter/mongo/variant.py +13 -8
- scout/build/panel.py +1 -1
- scout/commands/export/export_command.py +0 -0
- scout/commands/load/base.py +0 -0
- scout/commands/load/user.py +0 -0
- scout/commands/update/disease.py +0 -0
- scout/commands/update/genes.py +0 -0
- scout/commands/wipe_database.py +0 -0
- scout/constants/gene_tags.py +22 -12
- scout/demo/643594.research.mei.vcf.gz +0 -0
- scout/demo/643594.research.mei.vcf.gz.tbi +0 -0
- scout/load/panelapp.py +8 -12
- scout/parse/omim.py +5 -6
- scout/parse/panelapp.py +16 -42
- scout/parse/variant/compound.py +20 -21
- scout/parse/variant/gene.py +0 -0
- scout/parse/variant/genotype.py +0 -0
- scout/resources/custom_igv_tracks/mane.bb +0 -0
- scout/server/blueprints/cases/controllers.py +48 -0
- scout/server/blueprints/cases/templates/cases/case_report.html +17 -2
- scout/server/blueprints/cases/views.py +5 -5
- scout/server/blueprints/clinvar/controllers.py +4 -5
- scout/server/blueprints/institutes/controllers.py +129 -67
- scout/server/blueprints/institutes/forms.py +5 -2
- scout/server/blueprints/institutes/templates/overview/cases.html +6 -0
- scout/server/blueprints/institutes/templates/overview/utils.html +6 -5
- scout/server/blueprints/managed_variants/forms.py +17 -2
- scout/server/blueprints/managed_variants/templates/managed_variants/managed_variants.html +2 -2
- scout/server/blueprints/variant/templates/variant/components.html +27 -4
- scout/server/blueprints/variant/templates/variant/sv-variant.html +2 -2
- scout/server/blueprints/variant/templates/variant/tx_overview.html +3 -3
- scout/server/blueprints/variant/views.py +1 -2
- scout/server/blueprints/variants/forms.py +33 -5
- scout/server/blueprints/variants/templates/variants/cancer-sv-variants.html +4 -18
- scout/server/blueprints/variants/templates/variants/cancer-variants.html +2 -12
- scout/server/blueprints/variants/templates/variants/components.html +15 -1
- scout/server/blueprints/variants/templates/variants/sv-variants.html +2 -2
- scout/server/links.py +1 -1
- scout/utils/acmg.py +0 -1
- scout/utils/ccv.py +1 -9
- scout/utils/link.py +4 -3
- scout/utils/md5.py +0 -0
- {scout_browser-4.93.1.dist-info → scout_browser-4.95.0.dist-info}/METADATA +66 -45
- {scout_browser-4.93.1.dist-info → scout_browser-4.95.0.dist-info}/RECORD +41 -42
- {scout_browser-4.93.1.dist-info → scout_browser-4.95.0.dist-info}/WHEEL +1 -2
- scout/__version__.py +0 -1
- scout_browser-4.93.1.dist-info/top_level.txt +0 -1
- {scout_browser-4.93.1.dist-info → scout_browser-4.95.0.dist-info}/entry_points.txt +0 -0
- {scout_browser-4.93.1.dist-info → scout_browser-4.95.0.dist-info/licenses}/LICENSE +0 -0
@@ -1,5 +1,4 @@
|
|
1
1
|
scout/__init__.py,sha256=Z4liXvmEcLkC67ElsWvYHfemPKdWgWI5O6MB6XlDM8M,232
|
2
|
-
scout/__version__.py,sha256=QvBUfmeaghMXRYxQv7CLutqQ8EWHp4OXnrEJdYtEKgU,23
|
3
2
|
scout/adapter/__init__.py,sha256=-iX_hx2NI1EMAqX0pMd5_90Nnd9uvIMxv9EbefYBzsc,86
|
4
3
|
scout/adapter/client.py,sha256=IuajRsEwTG41ZP14X09Q1Cj94zIgmIvUtlXfcAFn0EA,1513
|
5
4
|
scout/adapter/mongo/__init__.py,sha256=NdHYCUXWUAuX5cUS3-6HCws2hW9uoGep8i0SC-oJd3k,31
|
@@ -14,20 +13,20 @@ scout/adapter/mongo/cytoband.py,sha256=2NoIAoQ7RPqcipiSymD2O9qH8lXscP3T5ejquOrD7
|
|
14
13
|
scout/adapter/mongo/disease_terms.py,sha256=4qcQRLuP5xn_RkB2RlNtwCrONmDuWwdlngZrj87BUEo,5637
|
15
14
|
scout/adapter/mongo/event.py,sha256=NnURFhS5odOXk7So_gGMHmALPAJM0PWzESI4FC06azE,19842
|
16
15
|
scout/adapter/mongo/filter.py,sha256=vzBJS_6vq2z76SH8PszdRR-MNuZ7_RA4VJvnkNYUs7s,8937
|
17
|
-
scout/adapter/mongo/hgnc.py,sha256=
|
16
|
+
scout/adapter/mongo/hgnc.py,sha256=P80WdIFkpFDeR6Pa0H-pgeScGrZdCviWVL4rqR5Aqvk,16547
|
18
17
|
scout/adapter/mongo/hpo.py,sha256=ps2Pix3sGeea7DenboZVP5j7Vh9WAgX3-sgpbAj0Eck,6871
|
19
18
|
scout/adapter/mongo/index.py,sha256=TZPVv6xBWsEtZpBUWp5uhjuPjQMfVss4lZZju49g1Lw,3577
|
20
19
|
scout/adapter/mongo/institute.py,sha256=GQmMKb_VzsvWwadp6gXHlSSpcG5ovF1ozdTzvpTFLpA,7025
|
21
|
-
scout/adapter/mongo/managed_variant.py,sha256=
|
20
|
+
scout/adapter/mongo/managed_variant.py,sha256=mPbp64nMDwAij8zvBbFGjI3MLbk6CC-OO9RTwtEIi44,8451
|
22
21
|
scout/adapter/mongo/matchmaker.py,sha256=amTvFOlUbrt1RmecY_8hPY6bO3j79lc2UbmzlCQcRuk,6378
|
23
22
|
scout/adapter/mongo/omics_variant.py,sha256=VdkNG_l6vcr3UF25EixEfvIdMGkSGeNaMjLRhQHS_lc,7521
|
24
23
|
scout/adapter/mongo/panel.py,sha256=d1oMEYAiDGybLmlbbf3-fQdCdU0-T7x2XdIUwZGthYk,20031
|
25
24
|
scout/adapter/mongo/phenomodel.py,sha256=cypSS8YRzu98Bf1kC0orfrLNn_ZQSYCK8e4mNR5PaPY,2572
|
26
|
-
scout/adapter/mongo/query.py,sha256=
|
25
|
+
scout/adapter/mongo/query.py,sha256=NA1fM-iawE6nTWP_SFfSBGoV3heV9Eu7Uri0oExwgOw,34865
|
27
26
|
scout/adapter/mongo/rank_model.py,sha256=wvDNI4OLf-f7ZYZ_Q_6qi0myxOJCNNJR_-2-_0u2K2M,5712
|
28
27
|
scout/adapter/mongo/transcript.py,sha256=3U1qtyxZ1DnrzdBJm_emJXISMYFKJuX_zAKynUt8NMY,7417
|
29
28
|
scout/adapter/mongo/user.py,sha256=QoQnRWqi_dV3ZwGzBonEU6Ap9TgMDf2x_C5UIqG0pa0,2569
|
30
|
-
scout/adapter/mongo/variant.py,sha256=
|
29
|
+
scout/adapter/mongo/variant.py,sha256=1vfvspPOOPyXjpiQ-dJdnDa6ExWpas7ZMTCyL6o5cCg,35208
|
31
30
|
scout/adapter/mongo/variant_events.py,sha256=yNnMM58P1LbYFw73rWzti6l2zWa_G93ozUTbVkcz4_I,33475
|
32
31
|
scout/adapter/mongo/variant_loader.py,sha256=C05StRMFVChopcolPYXFIbh_S-FhYHu4NvBCpiBLOeE,28327
|
33
32
|
scout/build/__init__.py,sha256=GUWEaXTpwsJil_KtrXBQJpZIwCQFSgo8NlK49R9IkA8,521
|
@@ -39,7 +38,7 @@ scout/build/hpo.py,sha256=LJBCTq-x09D0CSKcUHB8a6ynuUrVh_7Ia0ooA1BxMys,1207
|
|
39
38
|
scout/build/individual.py,sha256=a2L1NJF11oGaOU9LilWN5gftSyIRfk7H231mF2Y67WU,5232
|
40
39
|
scout/build/institute.py,sha256=CZKn-cFbh0cWO2ySoRV_P1nYFizlyvu50LKrtAz-PLo,1330
|
41
40
|
scout/build/managed_variant.py,sha256=krcQBc4LLxlnUQwXuV2FxNLiSkMoIkLxQueYFl04Vyo,1666
|
42
|
-
scout/build/panel.py,sha256=
|
41
|
+
scout/build/panel.py,sha256=smhtynG_ggNgUyuAGqg_-m1UMnBHhrk2ALutYoNTTec,4273
|
43
42
|
scout/build/user.py,sha256=Df_k2H4CxR80yqmgVvl3u3YC9ikr33BLH5fGkxZ3Mlw,942
|
44
43
|
scout/build/genes/__init__.py,sha256=AbpHGcgLb-kRsJGnwFEktk7uzpZOCcBY74-YBdrKVGs,1
|
45
44
|
scout/build/genes/exon.py,sha256=a0oyW69x0tTImu4rxce5pU3Cb_GLSIdbexU0ex_OH7Q,2256
|
@@ -135,7 +134,7 @@ scout/constants/clnsig.py,sha256=TSeZjUno2jEvQTenrltZ900ZFYIRNoul_Wm2qRjvpPA,149
|
|
135
134
|
scout/constants/disease_parsing.py,sha256=M9_OgsN88oXwKH_XpxdDma0zuWPRoHFQjL19tzojBPo,686
|
136
135
|
scout/constants/file_types.py,sha256=3BU2cw40cHMT5IzEGEF_SsIhgYUbnIlUCRmwmB01fzI,3046
|
137
136
|
scout/constants/filters.py,sha256=1bcj-z7__yv5eQpjB60wqSHZ3U5U0CVyNbcYT-Wn-vc,957
|
138
|
-
scout/constants/gene_tags.py,sha256=
|
137
|
+
scout/constants/gene_tags.py,sha256=CpUH13UOVZrYGXTKXS667u0So9j1A4Ig4KNGYdrDtLk,4513
|
139
138
|
scout/constants/igv_tracks.py,sha256=NbBBnM3s1S8cJM_S36qi7SU2ACW_lJVS6EP2W0kCTIQ,4697
|
140
139
|
scout/constants/indexes.py,sha256=mCj_ih9Sv7Qv4DrzLRH30EQZ-Tgyn_Sf6NYapCOlMOc,5793
|
141
140
|
scout/constants/panels.py,sha256=X38XGPlNgOGhXHt5mSpryOS7gMeP-tUD1t1WIT2G5wM,785
|
@@ -164,8 +163,8 @@ scout/demo/643594.ped_check.csv,sha256=36HoP13haqQerTEHuJF4R2r6Vh2AQilS1NTr7X6ao
|
|
164
163
|
scout/demo/643594.peddy.ped,sha256=msfhM3u_5hK_zjHhMas5Ns_KREllRyHN3kdTIVl5J-c,421
|
165
164
|
scout/demo/643594.research.SV.vcf.gz,sha256=MBB0y_RVKGaoAuILhHue8B1CX8ZQog53O1zRqSK08vg,11927
|
166
165
|
scout/demo/643594.research.SV.vcf.gz.tbi,sha256=_4-Oz7kICi7XdCh8T0g3y-iorJbK3i0ieSu5DUdE-1s,1284
|
167
|
-
scout/demo/643594.research.mei.vcf.gz,sha256=
|
168
|
-
scout/demo/643594.research.mei.vcf.gz.tbi,sha256=
|
166
|
+
scout/demo/643594.research.mei.vcf.gz,sha256=5QdZ0CJIEBIgmxgsn0o1eqd2yzsWSR0G3ZoPAFTx_JM,21068
|
167
|
+
scout/demo/643594.research.mei.vcf.gz.tbi,sha256=VLNUA2ht23ODbqAcqIpG0f0uWtYCLw9bGmLyY66jZzU,1417
|
169
168
|
scout/demo/643594.research.vcf.gz,sha256=ZutsU-JBbTyxPED_WsBPkVw31Ua-3WhsLL-w-iK1CBs,440072
|
170
169
|
scout/demo/643594.research.vcf.gz.tbi,sha256=SvYOfbwZKobAhBufsxkkQvDVVuAvBAAQcvwQmbLWY5g,7702
|
171
170
|
scout/demo/643594.sex_check.csv,sha256=Nwr8cpaJ1BNuTvbdpQMUWa6IDyND0d6J6WI-C65LA7Y,239
|
@@ -376,7 +375,7 @@ scout/load/hgnc_gene.py,sha256=GcSQ01CioYIshAzXAv4msIGDPjTjGBBPBnLX2GvaZJ4,4507
|
|
376
375
|
scout/load/hpo.py,sha256=ZWYjV9j6OfpI-ZZuhTQVEs_xgLa7ST2KuvYLW6ku0PY,2474
|
377
376
|
scout/load/institute.py,sha256=etmZ0CZRHOVi3f9R-wn5BK1pZPhtZwq2QYbh2RXXxDc,625
|
378
377
|
scout/load/panel.py,sha256=MY5M7-lDzVXt5RJH87N28TB7awdM6s-SoawholTl2GM,4776
|
379
|
-
scout/load/panelapp.py,sha256=
|
378
|
+
scout/load/panelapp.py,sha256=gE1WjT1XZQV_Pom15Fj1poYkYiQK75z_bBm9SN0d-Ow,5290
|
380
379
|
scout/load/report.py,sha256=TJvblks6Dp5-UDflWRTa8b3fe-A4bT4QnWT2yZLhfLA,820
|
381
380
|
scout/load/setup.py,sha256=Xu-m59rJW5bF6Agf6XdiEo_Ik4ZAFfN0tF2FjLIMYAY,8218
|
382
381
|
scout/load/transcript.py,sha256=mk0Da7GWwqLVRp2xRD9mlzqaomH9R-TL2aKCJx4fEA8,4632
|
@@ -415,10 +414,10 @@ scout/parse/hpo_mappings.py,sha256=UJY38iLmpJFnZ9FuRaNIGhNQnTx7_WASxr9mlEnhvHE,2
|
|
415
414
|
scout/parse/hpo_terms.py,sha256=ZJCKFD0rV3jiCuoI8Gm1WNTiaOSRRoKOhZ1bYnqwY6I,5732
|
416
415
|
scout/parse/matchmaker.py,sha256=eeAfyB8ObLIKveUL50i3YTBeZphqYhMCiz-4t2-dATI,9852
|
417
416
|
scout/parse/mitodel.py,sha256=3uvEXI9v9wIw97NUL7gqLLxHay0mpQpDgKaIxUbIyrE,803
|
418
|
-
scout/parse/omim.py,sha256=
|
417
|
+
scout/parse/omim.py,sha256=Qgzx3xoQ-HoVrvjE9QlbjlKgNPBb9kF028F5foko0ow,12428
|
419
418
|
scout/parse/orpha.py,sha256=5u9xqGpAn8vgoJ0uVqbYiqQBiNfBwXOiTzX16kAnmFU,4392
|
420
419
|
scout/parse/panel.py,sha256=J28e_MkKeB5r4hOutb3qimxUT7G5yg8x1Ca4bAs0I_c,9577
|
421
|
-
scout/parse/panelapp.py,sha256=
|
420
|
+
scout/parse/panelapp.py,sha256=xXU2QYTVEr9ksUBCqzdjfGqC3w95vAwrlk9qbZSrq1k,3112
|
422
421
|
scout/parse/peddy.py,sha256=uM49GaZMtr8waCsZDvCHDS5JDQ43JUlhdWh9C7f7ZvU,5418
|
423
422
|
scout/parse/smn.py,sha256=iOK1N8iYm9dFigsKtWq0Y0ZCa1CH29s9zeR_tH0bPuc,1153
|
424
423
|
scout/parse/omics_variant/__init__.py,sha256=vq8Ew4_Xr2vPy_3Fg0eTpPWsQpWnUXYBhjRndBUvtTw,422
|
@@ -426,7 +425,7 @@ scout/parse/omics_variant/drop.py,sha256=SD98E9ksPPv62SFUuR4TfZHVIIIy1RXZRdMhm5H
|
|
426
425
|
scout/parse/variant/__init__.py,sha256=5yqCQlAYMqosRabdipFUXqopSMBN4X6jwpNiKiYKlsE,35
|
427
426
|
scout/parse/variant/callers.py,sha256=eA5o4Ov_v5ds__4xpif1ttj5yk2nK4GXwhYSWL4NTDg,5709
|
428
427
|
scout/parse/variant/clnsig.py,sha256=dFIvV29cvMOFw7hSgbjBEXzWV5YVKpSGQqgLuHbMePk,5421
|
429
|
-
scout/parse/variant/compound.py,sha256=
|
428
|
+
scout/parse/variant/compound.py,sha256=6M60DrZk8A7-X3ICGEAVpWyjLC_UgXcK1zd_o7Cuemg,1502
|
430
429
|
scout/parse/variant/conservation.py,sha256=8eHXy57g6ng0eMo38LsIcQ8w_H5mpBSfiMuaXF7aBi4,2949
|
431
430
|
scout/parse/variant/coordinates.py,sha256=CU-EyD8NVgTbyIdmYDO3k-zVaMN1EDONjorDwyUSnXU,4742
|
432
431
|
scout/parse/variant/deleteriousness.py,sha256=zeFzx218GL-5pKniyci7MVHj3a1cep4nmvoSg7u0ogA,541
|
@@ -443,11 +442,12 @@ scout/parse/variant/variant.py,sha256=nf_0q2J7TryWhB-Oz697HYSDJTPNmkXnPHmKtjhHQU
|
|
443
442
|
scout/resources/__init__.py,sha256=i9UVG651subgmOZ-Gm-JKPsXBqr5-50QUDfSpbwmwIw,443
|
444
443
|
scout/resources/cytoBand_hg19.txt.gz,sha256=pheUD5b9NlVuvwwnbKwDc2FG80Yg70gvPxVXP-Sqd3k,6147
|
445
444
|
scout/resources/cytoBand_hg38.txt.gz,sha256=sqSVmvPlktQ-0hTiTapJM-5UgyV6xDoYZuTF0kPuETs,6105
|
445
|
+
scout/resources/custom_igv_tracks/mane.bb,sha256=flEexDxHmbX7IwwrMM0P5DWOxcSCjmHxGNlyg_WqElQ,3519360
|
446
446
|
scout/server/__init__.py,sha256=iwhKnzeBJLKxpRVjvzwiRE63_zNpIBfaKLITauVph-0,24
|
447
447
|
scout/server/app.py,sha256=70YdN9eWL1ySEYkuAHKOk_WA4Fm5dcIwtIZEcEf-xA0,10836
|
448
448
|
scout/server/auto.py,sha256=8B6GwfOaUChkTLuLgYQDFMWlxGuHkEegF1argH2G2Ik,401
|
449
449
|
scout/server/config.py,sha256=BFx6ix8D3KM90FqmaHLxv_feudO2kN2CkX1UWBGTjXE,5923
|
450
|
-
scout/server/links.py,sha256=
|
450
|
+
scout/server/links.py,sha256=f2h_zUFt4Tm_383ZmdIGsA6mUVQbpQmJ199ZTzUWemE,28115
|
451
451
|
scout/server/utils.py,sha256=d1fGdSwo-XjNHVjHd-uT3mGmUJ8yYB6weT7VgHo9nxM,12592
|
452
452
|
scout/server/blueprints/__init__.py,sha256=iwhKnzeBJLKxpRVjvzwiRE63_zNpIBfaKLITauVph-0,24
|
453
453
|
scout/server/blueprints/alignviewers/__init__.py,sha256=XMVed2ekVUAvroqENDHSr2pwM8otqau8ZA-rbH1T2U8,59
|
@@ -460,15 +460,15 @@ scout/server/blueprints/alignviewers/templates/alignviewers/utils.html,sha256=x2
|
|
460
460
|
scout/server/blueprints/api/__init__.py,sha256=HR6HjS7ot1K_8Lt5eQdNT154z_FCdHGSigy8r2LpNCI,26
|
461
461
|
scout/server/blueprints/api/views.py,sha256=pbl78wfhrm1T8JmiJDYF3BbTbfFrlF-hQRbuv2GWI0s,3729
|
462
462
|
scout/server/blueprints/cases/__init__.py,sha256=_c17kPFITFYcIVphF4V9bf0PZBer8bU3rtVWQnljKDU,52
|
463
|
-
scout/server/blueprints/cases/controllers.py,sha256=
|
464
|
-
scout/server/blueprints/cases/views.py,sha256=
|
463
|
+
scout/server/blueprints/cases/controllers.py,sha256=UzzFpDfS66f2ZL7cwDdpDFFRR_OtJzds9kc7Wx0U0wc,55747
|
464
|
+
scout/server/blueprints/cases/views.py,sha256=MQDOnLuywAQkVBgYaZAbaj9f6tps18bpo4nDFm77S4s,43165
|
465
465
|
scout/server/blueprints/cases/static/case_images.js,sha256=pb_gG7DNQc-1lADqSII8YvjBwmHyeQWYVtuu2jyrTlU,14997
|
466
466
|
scout/server/blueprints/cases/static/case_styles.css,sha256=2Pgc8pFf9DR5HM1sTdAjaRWhjL-bK5bsQnLpH54HZak,541
|
467
467
|
scout/server/blueprints/cases/static/edit_pedigree.js,sha256=ntC5fie7SsOYJau8qkke1UHxjiYWY_gBzWcIkGpdJUA,2978
|
468
468
|
scout/server/blueprints/cases/static/madeline.js,sha256=KHxKMBVlYVJODNu5QkY9hhsGkDJNoaCoCZZ0DRu0YN0,1175
|
469
469
|
scout/server/blueprints/cases/templates/cases/case.html,sha256=9Fcn-OFA1yIHchD0PjDs7-Y8I7Qqr8o6cavN0eOi5rI,37183
|
470
470
|
scout/server/blueprints/cases/templates/cases/case_bionano.html,sha256=PLoRv7hDJcHwxhi-0hC9fQSZc7V_aUYHBhhQqcn_2G8,5946
|
471
|
-
scout/server/blueprints/cases/templates/cases/case_report.html,sha256
|
471
|
+
scout/server/blueprints/cases/templates/cases/case_report.html,sha256=-ATAfUnT4a6dmdUSFuGjGPK7r6_XgOXPJtC-Lu8hOgs,66304
|
472
472
|
scout/server/blueprints/cases/templates/cases/case_sma.html,sha256=99rmRyDXFXjooB52TI5_ebJKv1ZAJbVXEw4deHfSVMA,7285
|
473
473
|
scout/server/blueprints/cases/templates/cases/case_tabular_view.html,sha256=ko-LDUKmIoTazMZ2nFWvPEZsgObU07RwqIkDYFjokoY,4317
|
474
474
|
scout/server/blueprints/cases/templates/cases/chanjo2_form.html,sha256=5Wmk7DM8LI3MynqzxeTzAr_EoEBwVVo31djcI5ZlTdo,2164
|
@@ -482,7 +482,7 @@ scout/server/blueprints/cases/templates/cases/matchmaker.html,sha256=kPYnmcZJ1gm
|
|
482
482
|
scout/server/blueprints/cases/templates/cases/phenotype.html,sha256=7vz5XPUExD6vc-wdijLKnPzaOFm9mQxOZ_ITAL3y7U8,16420
|
483
483
|
scout/server/blueprints/cases/templates/cases/utils.html,sha256=gHcxf3DOGcJJZMfjKY4NgvU_tjta5OnyWrKZy9pfGyY,35981
|
484
484
|
scout/server/blueprints/clinvar/__init__.py,sha256=BV3aH2AbiA2WWrUEMbGd0H9MefFd2eTsRE9ShywbzpI,30
|
485
|
-
scout/server/blueprints/clinvar/controllers.py,sha256=
|
485
|
+
scout/server/blueprints/clinvar/controllers.py,sha256=lCrVlokjnSURvsYkm6sTMxrZOL1Xj3VQAWbYr1o_mEY,24251
|
486
486
|
scout/server/blueprints/clinvar/form.py,sha256=2h42YJzaOtsdEglxqt7F1i2ncjSU_IHNt-m4QOJytK4,5148
|
487
487
|
scout/server/blueprints/clinvar/views.py,sha256=hPyTJA7Qy6QOL-ENSG1N0atnQXuYCb-iiO8fuNDjJns,6036
|
488
488
|
scout/server/blueprints/clinvar/static/form_style.css,sha256=Tro2w0Su9st2ZRpt8PjF7qXYet-0n6Eyol4oh94JafU,4073
|
@@ -508,14 +508,14 @@ scout/server/blueprints/genes/templates/genes/gene.html,sha256=a--c-IjzNKN_JW7z9
|
|
508
508
|
scout/server/blueprints/genes/templates/genes/genes.html,sha256=x6jXKijvuEX9GvIedHW4O_BerYXiWEmAdYT0HTiGnhI,1130
|
509
509
|
scout/server/blueprints/genes/templates/genes/layout.html,sha256=cZMLe2cInq24z0sZpPxDm_kEiAe5VQbOR-8XWn6wlvI,1601
|
510
510
|
scout/server/blueprints/institutes/__init__.py,sha256=kGSyYrBC1QaEQBDdoMkMLfaowV7roaV5DowICi_0RSQ,65
|
511
|
-
scout/server/blueprints/institutes/controllers.py,sha256=
|
512
|
-
scout/server/blueprints/institutes/forms.py,sha256=
|
511
|
+
scout/server/blueprints/institutes/controllers.py,sha256=qu8bonz74Ff-nTevOy4BaLhYrXbgD4rZEc81NvBkK_w,34055
|
512
|
+
scout/server/blueprints/institutes/forms.py,sha256=7ixKPYewR24lnM9vwGNS9EcBHR6072kPRuvE0jk6acE,6685
|
513
513
|
scout/server/blueprints/institutes/views.py,sha256=PSpf82kW0EKZc24CPhBhuE-wXXGyIz-R6IJu7IM0IrM,9052
|
514
514
|
scout/server/blueprints/institutes/static/form_scripts.js,sha256=8Sn7omeXeeUbiXJPfT0Qb4CaBJ_KtZZWw7N2he7EDx0,747
|
515
515
|
scout/server/blueprints/institutes/static/select2_darktheme.css,sha256=Nq_va597W_e5y-52B4ClwSJzACq0WFbPU8SIp3DtKIo,1818
|
516
516
|
scout/server/blueprints/institutes/static/timeline_styles.css,sha256=Vq48ffIidpQmDQhAzfW47O9mGQZEWdlbMtOE8AK-ZEU,2122
|
517
517
|
scout/server/blueprints/institutes/static/variants_list_scripts.js,sha256=gO_ZuJC2jj7Y9x6CEVEVhN1oIE4bIWrTY0_zVcsbRbY,236
|
518
|
-
scout/server/blueprints/institutes/templates/overview/cases.html,sha256=
|
518
|
+
scout/server/blueprints/institutes/templates/overview/cases.html,sha256=GOt1Y2PZLVigL3wqi5NAJFqIjQHgaocrbJzFcCUzOfY,12900
|
519
519
|
scout/server/blueprints/institutes/templates/overview/causatives.html,sha256=192pgqUSXQF4qhC933qsYtTwvmlqDctxwHcArERkHc8,1619
|
520
520
|
scout/server/blueprints/institutes/templates/overview/filters.html,sha256=Dzu5YicmdjW_zGqbCUrb8TMbSUuRaG47itTMwwX7Bm8,3102
|
521
521
|
scout/server/blueprints/institutes/templates/overview/gene_variants.html,sha256=EyhBZEdMZQBaJWR_FDeabuWXRSd4Xcqh0teaxVyNvAE,8442
|
@@ -523,7 +523,7 @@ scout/server/blueprints/institutes/templates/overview/institute_settings.html,sh
|
|
523
523
|
scout/server/blueprints/institutes/templates/overview/institute_sidebar.html,sha256=vQQunXH2Cr8-z2Kc7uTCzsSqIX14Xld44NWqdhpw-Hs,4304
|
524
524
|
scout/server/blueprints/institutes/templates/overview/timeline.html,sha256=upTv7v4sUwxGfJDSyk8F5zPb61dedG66zgfvh_SMR4M,2289
|
525
525
|
scout/server/blueprints/institutes/templates/overview/users.html,sha256=6dkbDBNLw2b97M2Pd8JImpPoT3FLTcl84oBN3inLJRg,1134
|
526
|
-
scout/server/blueprints/institutes/templates/overview/utils.html,sha256=
|
526
|
+
scout/server/blueprints/institutes/templates/overview/utils.html,sha256=9W60kUmIRPsu_JX0kDMg0hkz8CUY8vn2MdoegRAMqFc,33199
|
527
527
|
scout/server/blueprints/institutes/templates/overview/verified.html,sha256=qxZ8mIPX00ZXIy_5eLO2QmLrjJZrhw97kdXBZxpRj38,3363
|
528
528
|
scout/server/blueprints/login/__init__.py,sha256=uDzQjNNrMloZ4-i-1cEW7d59FZ--Xy89b-Xn5SvyC1U,52
|
529
529
|
scout/server/blueprints/login/controllers.py,sha256=bg0me00OvwYJiTm4dZnbl8eyRRRDquBMs5U7_YV4xWI,1883
|
@@ -540,9 +540,9 @@ scout/server/blueprints/login/static/superintendent.svg,sha256=fEjo8KtKh56ge7jWA
|
|
540
540
|
scout/server/blueprints/login/templates/login/users.html,sha256=ClMOKE7jlSAWHa5d1bXb5RKrE0kmCZETklFYj2CDo98,1858
|
541
541
|
scout/server/blueprints/managed_variants/__init__.py,sha256=wpDezF_TYKSRkrUGX_aWxdpITMvKvnNqWQtuy6YV1bI,63
|
542
542
|
scout/server/blueprints/managed_variants/controllers.py,sha256=HQ9jkTMzVEBLEmswXE7lg8Zj05ENshZeirzIpxm52lk,7281
|
543
|
-
scout/server/blueprints/managed_variants/forms.py,sha256=
|
543
|
+
scout/server/blueprints/managed_variants/forms.py,sha256=DmG0KuY82R1pRIUC7niJFQqFuZCDB4x-vj6635hFliQ,2590
|
544
544
|
scout/server/blueprints/managed_variants/views.py,sha256=wHOClPy2ZCIQvandia90kG6I6IPhxKVOiAnG4esXh-0,2473
|
545
|
-
scout/server/blueprints/managed_variants/templates/managed_variants/managed_variants.html,sha256=
|
545
|
+
scout/server/blueprints/managed_variants/templates/managed_variants/managed_variants.html,sha256=jrhcdUODlhWHiAgVeHowJ0c0wWDYFIU5iMO1oWjsG-A,17311
|
546
546
|
scout/server/blueprints/omics_variants/__init__.py,sha256=8UVXrChArhIvMxtgUcG-udvmlTn56q41iy-naOZw5us,37
|
547
547
|
scout/server/blueprints/omics_variants/controllers.py,sha256=AnM70stvLniJIU3pFUX-InNjuT-7K0RpuAEYa7vM-jw,3912
|
548
548
|
scout/server/blueprints/omics_variants/views.py,sha256=P-mo2S1RBGYxsNCFqSTNQNLvqiH9r6_AoZgsOWpopPE,3817
|
@@ -607,35 +607,35 @@ scout/server/blueprints/variant/__init__.py,sha256=SlD8-Aoj9Jq9aVTJjtFfsu-0sUVfk
|
|
607
607
|
scout/server/blueprints/variant/controllers.py,sha256=dnx5YFVF62V2kAspfGpw0Mr0qUH1VoU1EBTP1hvIlZM,29691
|
608
608
|
scout/server/blueprints/variant/utils.py,sha256=BMezzz9Y9ZoGMaLKRbQopJUkWWUo1M9Xi-pw82Vdm4k,25079
|
609
609
|
scout/server/blueprints/variant/verification_controllers.py,sha256=eKzP222e7xuFOaQaI9MLOrD9RWtI8uGB1cJYbcXLzF0,10972
|
610
|
-
scout/server/blueprints/variant/views.py,sha256=
|
610
|
+
scout/server/blueprints/variant/views.py,sha256=lP6K0BD0d4TDxOMFiQ-UUxF4UkoALzX-nxo_aSY7muI,18969
|
611
611
|
scout/server/blueprints/variant/templates/variant/acmg.html,sha256=Fk4vL1Pu4G3wZsfiUO2jBlFLFoRgFAeqChlIyas5Bb4,8758
|
612
612
|
scout/server/blueprints/variant/templates/variant/buttons.html,sha256=4vlnvJKhr28qqzevlecAIvumvOgLZhGyPYQm68AnKzU,7608
|
613
613
|
scout/server/blueprints/variant/templates/variant/cancer-variant.html,sha256=ZUnZYURdlLfiJ1Ryok5oRVa96bvBErhIgym2VlWlryQ,14001
|
614
614
|
scout/server/blueprints/variant/templates/variant/ccv.html,sha256=X33qKY1EvzoLldko1hK5tgE__xxNU54vq6fRzFew6Vc,8671
|
615
|
-
scout/server/blueprints/variant/templates/variant/components.html,sha256=
|
615
|
+
scout/server/blueprints/variant/templates/variant/components.html,sha256=dmKxuSrJgvKRtRAzXMN9W2-uZwsLwzde0W4CHqnBb-Q,26185
|
616
616
|
scout/server/blueprints/variant/templates/variant/gene_disease_relations.html,sha256=1U77akxqbb4AS2GSyvFwGD6D7rP68L3KXKLUmP73664,7256
|
617
617
|
scout/server/blueprints/variant/templates/variant/rank_score_results.html,sha256=32RfBrpZ_J-1WYE01Bdd5IC9i1MAzXT7GF27OlElk94,2040
|
618
618
|
scout/server/blueprints/variant/templates/variant/sanger.html,sha256=0kVnscTw3KUwjR4QOEuNJMOK9eADGEn9qGNtGx2ST7Y,4507
|
619
619
|
scout/server/blueprints/variant/templates/variant/str-variant-reviewer.html,sha256=p0nWqo71GJ8ACLEzXuZbJAzDXoCHZLvH6f7yLi3JslI,2208
|
620
|
-
scout/server/blueprints/variant/templates/variant/sv-variant.html,sha256=
|
621
|
-
scout/server/blueprints/variant/templates/variant/tx_overview.html,sha256=
|
620
|
+
scout/server/blueprints/variant/templates/variant/sv-variant.html,sha256=4FBomOYYEDQWOl6jvW4Ffd6PQhqmPPKDA23wzMlZ6zI,16778
|
621
|
+
scout/server/blueprints/variant/templates/variant/tx_overview.html,sha256=EXLBDh_SgNVEO7MPMjlmfO6MDhtDcj0JyvZdRgxbwSM,6756
|
622
622
|
scout/server/blueprints/variant/templates/variant/utils.html,sha256=lF-w3400plEn0gVpHG-9k7N9L_p1U-PFGitcT_YlZw8,25414
|
623
623
|
scout/server/blueprints/variant/templates/variant/variant.html,sha256=JA0jI1ITvKamJY88U6-uBXYrHRZa3H2oyBUROtX9TKw,17874
|
624
624
|
scout/server/blueprints/variant/templates/variant/variant_details.html,sha256=KAdrLo8UTxO1Nr5ggfdn663E7xMq1rK0A2PrKXCJGjM,21049
|
625
625
|
scout/server/blueprints/variants/__init__.py,sha256=W1KCz9kEbVlNO0o3NvLitYLQoP_3JSJ5KSjhpcjlUBQ,55
|
626
626
|
scout/server/blueprints/variants/controllers.py,sha256=ILJt2Jl9ShkePgZI1Grff-_gcxlZFzQ8zoQ86iZPxOI,74205
|
627
|
-
scout/server/blueprints/variants/forms.py,sha256=
|
627
|
+
scout/server/blueprints/variants/forms.py,sha256=nxsZGHOr2M9GyQob8_8CK5qFgPgxZ3wBdFT69PkVVJc,11447
|
628
628
|
scout/server/blueprints/variants/utils.py,sha256=ifFBoyigx0A5KPE4iz9NSpyuUeF1bElrb4ohQLD2GlU,919
|
629
629
|
scout/server/blueprints/variants/views.py,sha256=skUGpZyRDzW4BEDIqWKajHBLF3qBUSP-UYSZYxbv3l8,28895
|
630
630
|
scout/server/blueprints/variants/static/form_scripts.js,sha256=o3GCboaesA9Sm1HgejS_yQwt0I-NTkvcl56jiBdLqZs,8319
|
631
|
-
scout/server/blueprints/variants/templates/variants/cancer-sv-variants.html,sha256=
|
632
|
-
scout/server/blueprints/variants/templates/variants/cancer-variants.html,sha256=
|
633
|
-
scout/server/blueprints/variants/templates/variants/components.html,sha256=
|
631
|
+
scout/server/blueprints/variants/templates/variants/cancer-sv-variants.html,sha256=QlGmUEdUQ7gCq7tMMUFAlGqqC9jFB78Q0h6tSp3QUas,7271
|
632
|
+
scout/server/blueprints/variants/templates/variants/cancer-variants.html,sha256=LnybOzNu4RkbighdIcV6okJwQWiO5ixOhTev_-QaQII,9611
|
633
|
+
scout/server/blueprints/variants/templates/variants/components.html,sha256=PGtcPGVbd3gcdG_6ozA66LDo3ZJ8VoehaDMUZjwyA5Q,17431
|
634
634
|
scout/server/blueprints/variants/templates/variants/fusion-variants.html,sha256=XGaLgWobzeFHwyQLXr_Yq9THssf8tGU91VbFKdGOFBg,4801
|
635
635
|
scout/server/blueprints/variants/templates/variants/indicators.html,sha256=5aSXytiWvaU87cqcR9GcB7U5jP8t-PVnor8FpKLl_k0,4847
|
636
636
|
scout/server/blueprints/variants/templates/variants/mei-variants.html,sha256=2Tb0vfzM--kJa5mVbT7L32h4E8nKYRSb245g6O5JIUU,5860
|
637
637
|
scout/server/blueprints/variants/templates/variants/str-variants.html,sha256=bjjeyoEO1aScqIDLtCh3xexZfvf1906yusPGJTyeNLU,10644
|
638
|
-
scout/server/blueprints/variants/templates/variants/sv-variants.html,sha256=
|
638
|
+
scout/server/blueprints/variants/templates/variants/sv-variants.html,sha256=fRDnB9wXago2OB2mthp0rD_Es4kxnj9YKRlOKCGVW3s,6407
|
639
639
|
scout/server/blueprints/variants/templates/variants/utils.html,sha256=MNDc2JwumU9ukISizSAraxIY06rHXR2Ze32RNnDEBI4,50042
|
640
640
|
scout/server/blueprints/variants/templates/variants/variants.html,sha256=KnCcsA1VaRdsbRCCw9Rg0TJTUvq03X9S24QgCqVToUk,9328
|
641
641
|
scout/server/extensions/__init__.py,sha256=s6qkGSFNRi_tP7yoeoXB5UarvLHidaK1Yw2Pae7Py90,1366
|
@@ -666,9 +666,9 @@ scout/server/translations/sv/LC_MESSAGES/messages.po,sha256=Wp7Mx4LoiFNtzsV1tpAo
|
|
666
666
|
scout/update/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
|
667
667
|
scout/update/panel.py,sha256=4z-vQ7GVIJXtlIub9pubFcQ-I9mLX5fRXKNPBdpuhJw,1649
|
668
668
|
scout/utils/__init__.py,sha256=DHCMH05dxkyD7m9QSs0WXsQQPgVRFQ9XvyNeNpHjjvg,74
|
669
|
-
scout/utils/acmg.py,sha256=
|
669
|
+
scout/utils/acmg.py,sha256=IkWWmHxc0YvoSurzXimKkH_Vf8C0bncywVUVu8m-YlY,11539
|
670
670
|
scout/utils/algorithms.py,sha256=w--NauXbQohZis7obr39a8bS57C4NRelYXn79V7m1dU,800
|
671
|
-
scout/utils/ccv.py,sha256=
|
671
|
+
scout/utils/ccv.py,sha256=WhVyIzNW0ttfT4ZegOPGFR1xqqjRFNgnJSY7DPfXGNQ,5605
|
672
672
|
scout/utils/convert.py,sha256=asrsis3zkt9jXzseRmCqSa4_t1UT73HPPQRW-DKDdqE,1794
|
673
673
|
scout/utils/coordinates.py,sha256=n8WUFn9zohXfjxgFGryyg6mzdl0zBG8uVCdyjhizSpM,609
|
674
674
|
scout/utils/date.py,sha256=GUALqEIgWtbopqC9wJnVKmVm5FRq111iz4RfojUIfG0,1334
|
@@ -678,14 +678,13 @@ scout/utils/ensembl_rest_clients.py,sha256=of6CXQHBnwH4ji5URAZcEqVTebxduLs13lBWv
|
|
678
678
|
scout/utils/gene.py,sha256=uzIGrPBfOkhRGGR9iTSYa00w6PWijjpzSAWRo54wixM,1430
|
679
679
|
scout/utils/handle.py,sha256=tLjinHNLADa3IJSxMp_HJe9cbiMlPTsfky4hujplPqU,327
|
680
680
|
scout/utils/hgvs.py,sha256=P5i3fIK8WZZlUnjZ8XpMDUG5KDXRCDSOs55DfK5acsc,898
|
681
|
-
scout/utils/link.py,sha256=
|
681
|
+
scout/utils/link.py,sha256=HpQvwu0hmuCrs7TcAExLmOzEGr3glWuu8iaW0ao5pEA,9011
|
682
682
|
scout/utils/md5.py,sha256=KkgdxOf7xbF9AF40ZjQKCgWaxFWJ9tp9RKjd8SU6IoA,649
|
683
683
|
scout/utils/scout_requests.py,sha256=lgPumNI_EikBZR1m9ztZI_mZAfV29y1KGoiBv9kejzQ,12797
|
684
684
|
scout/utils/sort.py,sha256=1AcbeZ6vdt_UXM3BLDBa3aQmN4qxrqtskxwD19oBhvw,756
|
685
685
|
scout/utils/track_resources.py,sha256=eUjSEe-Ff8BIb4BHPC_COkJocQO2PaWueiPz1GAuiwY,2614
|
686
|
-
scout_browser-4.
|
687
|
-
scout_browser-4.
|
688
|
-
scout_browser-4.
|
689
|
-
scout_browser-4.
|
690
|
-
scout_browser-4.
|
691
|
-
scout_browser-4.93.1.dist-info/RECORD,,
|
686
|
+
scout_browser-4.95.0.dist-info/METADATA,sha256=IbeBpNPEf-Th3spPxj1Jjt1KXYuLBgWig8t7CWb6-dY,15642
|
687
|
+
scout_browser-4.95.0.dist-info/WHEEL,sha256=qtCwoSJWgHk21S1Kb4ihdzI2rlJ1ZKaIurTj_ngOhyQ,87
|
688
|
+
scout_browser-4.95.0.dist-info/entry_points.txt,sha256=q_mxFwbMFTwXRDDIRVcqKram2ubMVmvs3CSNvZri1nY,45
|
689
|
+
scout_browser-4.95.0.dist-info/licenses/LICENSE,sha256=TM1Y9Cqbwk55JVfxD-_bpGLtZQAeN9RovQlqHK6eOTY,1485
|
690
|
+
scout_browser-4.95.0.dist-info/RECORD,,
|
scout/__version__.py
DELETED
@@ -1 +0,0 @@
|
|
1
|
-
__version__ = "4.93.1"
|
@@ -1 +0,0 @@
|
|
1
|
-
scout
|
File without changes
|
File without changes
|