scout-browser 4.92__py3-none-any.whl → 4.95.0__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- scout/adapter/mongo/base.py +3 -0
- scout/adapter/mongo/case.py +27 -2
- scout/adapter/mongo/ccv.py +131 -0
- scout/adapter/mongo/hgnc.py +5 -1
- scout/adapter/mongo/managed_variant.py +4 -2
- scout/adapter/mongo/query.py +91 -54
- scout/adapter/mongo/variant.py +17 -11
- scout/adapter/mongo/variant_events.py +45 -1
- scout/build/ccv.py +59 -0
- scout/build/panel.py +1 -1
- scout/commands/export/export_command.py +0 -0
- scout/commands/load/base.py +0 -0
- scout/commands/load/user.py +0 -0
- scout/commands/serve.py +2 -1
- scout/commands/update/disease.py +0 -0
- scout/commands/update/genes.py +0 -0
- scout/commands/wipe_database.py +0 -0
- scout/constants/__init__.py +2 -0
- scout/constants/case_tags.py +2 -0
- scout/constants/ccv.py +244 -0
- scout/constants/gene_tags.py +22 -12
- scout/demo/643594.config.yaml +2 -2
- scout/demo/643594.research.mei.vcf.gz +0 -0
- scout/demo/643594.research.mei.vcf.gz.tbi +0 -0
- scout/demo/images/custom_images/1300x1000.jpg +0 -0
- scout/load/panelapp.py +8 -12
- scout/models/ccv_evaluation.py +26 -0
- scout/models/variant/variant.py +1 -0
- scout/parse/omim.py +5 -6
- scout/parse/panelapp.py +16 -42
- scout/parse/variant/compound.py +20 -21
- scout/parse/variant/gene.py +0 -0
- scout/parse/variant/genotype.py +0 -0
- scout/resources/custom_igv_tracks/mane.bb +0 -0
- scout/server/blueprints/cases/controllers.py +48 -0
- scout/server/blueprints/cases/templates/cases/case_report.html +61 -1
- scout/server/blueprints/cases/templates/cases/collapsible_actionbar.html +2 -2
- scout/server/blueprints/cases/templates/cases/index.html +0 -2
- scout/server/blueprints/cases/views.py +5 -5
- scout/server/blueprints/clinvar/controllers.py +4 -5
- scout/server/blueprints/institutes/controllers.py +129 -67
- scout/server/blueprints/institutes/forms.py +5 -2
- scout/server/blueprints/institutes/templates/overview/cases.html +6 -0
- scout/server/blueprints/institutes/templates/overview/causatives.html +1 -1
- scout/server/blueprints/institutes/templates/overview/utils.html +18 -6
- scout/server/blueprints/institutes/templates/overview/verified.html +1 -1
- scout/server/blueprints/institutes/views.py +4 -0
- scout/server/blueprints/managed_variants/forms.py +17 -2
- scout/server/blueprints/managed_variants/templates/managed_variants/managed_variants.html +2 -2
- scout/server/blueprints/panels/controllers.py +5 -6
- scout/server/blueprints/panels/templates/panels/panel.html +5 -5
- scout/server/blueprints/variant/controllers.py +148 -1
- scout/server/blueprints/variant/templates/variant/cancer-variant.html +1 -1
- scout/server/blueprints/variant/templates/variant/ccv.html +183 -0
- scout/server/blueprints/variant/templates/variant/components.html +86 -5
- scout/server/blueprints/variant/templates/variant/sv-variant.html +2 -2
- scout/server/blueprints/variant/templates/variant/tx_overview.html +3 -3
- scout/server/blueprints/variant/templates/variant/variant.html +1 -1
- scout/server/blueprints/variant/templates/variant/variant_details.html +29 -11
- scout/server/blueprints/variant/utils.py +21 -1
- scout/server/blueprints/variant/views.py +115 -5
- scout/server/blueprints/variants/controllers.py +31 -0
- scout/server/blueprints/variants/forms.py +33 -5
- scout/server/blueprints/variants/templates/variants/cancer-sv-variants.html +4 -18
- scout/server/blueprints/variants/templates/variants/cancer-variants.html +4 -13
- scout/server/blueprints/variants/templates/variants/components.html +77 -73
- scout/server/blueprints/variants/templates/variants/indicators.html +11 -0
- scout/server/blueprints/variants/templates/variants/sv-variants.html +2 -2
- scout/server/links.py +1 -1
- scout/server/static/custom_images.js +19 -2
- scout/utils/acmg.py +0 -1
- scout/utils/ccv.py +193 -0
- scout/utils/link.py +4 -3
- scout/utils/md5.py +0 -0
- {scout_browser-4.92.dist-info → scout_browser-4.95.0.dist-info}/METADATA +67 -45
- {scout_browser-4.92.dist-info → scout_browser-4.95.0.dist-info}/RECORD +70 -65
- {scout_browser-4.92.dist-info → scout_browser-4.95.0.dist-info}/WHEEL +1 -2
- scout/__version__.py +0 -1
- scout/demo/images/custom_images/640x480_two.jpg +0 -0
- scout_browser-4.92.dist-info/top_level.txt +0 -1
- {scout_browser-4.92.dist-info → scout_browser-4.95.0.dist-info}/entry_points.txt +0 -0
- {scout_browser-4.92.dist-info → scout_browser-4.95.0.dist-info/licenses}/LICENSE +0 -0
@@ -1,43 +1,44 @@
|
|
1
1
|
scout/__init__.py,sha256=Z4liXvmEcLkC67ElsWvYHfemPKdWgWI5O6MB6XlDM8M,232
|
2
|
-
scout/__version__.py,sha256=ANcNj-w6TB4wETdZ9CZJYc1ZGU2Q1cA11Hzzi92m9BE,21
|
3
2
|
scout/adapter/__init__.py,sha256=-iX_hx2NI1EMAqX0pMd5_90Nnd9uvIMxv9EbefYBzsc,86
|
4
3
|
scout/adapter/client.py,sha256=IuajRsEwTG41ZP14X09Q1Cj94zIgmIvUtlXfcAFn0EA,1513
|
5
4
|
scout/adapter/mongo/__init__.py,sha256=NdHYCUXWUAuX5cUS3-6HCws2hW9uoGep8i0SC-oJd3k,31
|
6
5
|
scout/adapter/mongo/acmg.py,sha256=v2Zuw-6APVmcnBnNXa18WJEu2vj5GUhZNiKMkruJsBI,4170
|
7
|
-
scout/adapter/mongo/base.py,sha256=
|
8
|
-
scout/adapter/mongo/case.py,sha256=
|
6
|
+
scout/adapter/mongo/base.py,sha256=iIa2AjGNztKHcZzolY0T6r7Oh0guj6R1putztp4OTNY,4427
|
7
|
+
scout/adapter/mongo/case.py,sha256=aHHCOeB1wjEX98HKBpDFWC0zZ149Orn93XkW0m7Wj7A,65148
|
9
8
|
scout/adapter/mongo/case_events.py,sha256=slHR4XJF9vRuEbuInJKMMAImLF8m7tHWVfGP42fbXr0,26859
|
10
9
|
scout/adapter/mongo/case_group.py,sha256=tG8DuO0rNYepV4k0yCGPqssODErc0HMsAypg3mfhcV0,1575
|
10
|
+
scout/adapter/mongo/ccv.py,sha256=VIz-Yqzm-1UVPDKvZkBllO4BOKXzvKCXcQUjTtZCHTI,4165
|
11
11
|
scout/adapter/mongo/clinvar.py,sha256=tczC39O3DFDkYgjt2RDgkkG-x1Mvx_99Hw7dAbIQ5gk,19838
|
12
12
|
scout/adapter/mongo/cytoband.py,sha256=2NoIAoQ7RPqcipiSymD2O9qH8lXscP3T5ejquOrD7uQ,2622
|
13
13
|
scout/adapter/mongo/disease_terms.py,sha256=4qcQRLuP5xn_RkB2RlNtwCrONmDuWwdlngZrj87BUEo,5637
|
14
14
|
scout/adapter/mongo/event.py,sha256=NnURFhS5odOXk7So_gGMHmALPAJM0PWzESI4FC06azE,19842
|
15
15
|
scout/adapter/mongo/filter.py,sha256=vzBJS_6vq2z76SH8PszdRR-MNuZ7_RA4VJvnkNYUs7s,8937
|
16
|
-
scout/adapter/mongo/hgnc.py,sha256=
|
16
|
+
scout/adapter/mongo/hgnc.py,sha256=P80WdIFkpFDeR6Pa0H-pgeScGrZdCviWVL4rqR5Aqvk,16547
|
17
17
|
scout/adapter/mongo/hpo.py,sha256=ps2Pix3sGeea7DenboZVP5j7Vh9WAgX3-sgpbAj0Eck,6871
|
18
18
|
scout/adapter/mongo/index.py,sha256=TZPVv6xBWsEtZpBUWp5uhjuPjQMfVss4lZZju49g1Lw,3577
|
19
19
|
scout/adapter/mongo/institute.py,sha256=GQmMKb_VzsvWwadp6gXHlSSpcG5ovF1ozdTzvpTFLpA,7025
|
20
|
-
scout/adapter/mongo/managed_variant.py,sha256=
|
20
|
+
scout/adapter/mongo/managed_variant.py,sha256=mPbp64nMDwAij8zvBbFGjI3MLbk6CC-OO9RTwtEIi44,8451
|
21
21
|
scout/adapter/mongo/matchmaker.py,sha256=amTvFOlUbrt1RmecY_8hPY6bO3j79lc2UbmzlCQcRuk,6378
|
22
22
|
scout/adapter/mongo/omics_variant.py,sha256=VdkNG_l6vcr3UF25EixEfvIdMGkSGeNaMjLRhQHS_lc,7521
|
23
23
|
scout/adapter/mongo/panel.py,sha256=d1oMEYAiDGybLmlbbf3-fQdCdU0-T7x2XdIUwZGthYk,20031
|
24
24
|
scout/adapter/mongo/phenomodel.py,sha256=cypSS8YRzu98Bf1kC0orfrLNn_ZQSYCK8e4mNR5PaPY,2572
|
25
|
-
scout/adapter/mongo/query.py,sha256=
|
25
|
+
scout/adapter/mongo/query.py,sha256=NA1fM-iawE6nTWP_SFfSBGoV3heV9Eu7Uri0oExwgOw,34865
|
26
26
|
scout/adapter/mongo/rank_model.py,sha256=wvDNI4OLf-f7ZYZ_Q_6qi0myxOJCNNJR_-2-_0u2K2M,5712
|
27
27
|
scout/adapter/mongo/transcript.py,sha256=3U1qtyxZ1DnrzdBJm_emJXISMYFKJuX_zAKynUt8NMY,7417
|
28
28
|
scout/adapter/mongo/user.py,sha256=QoQnRWqi_dV3ZwGzBonEU6Ap9TgMDf2x_C5UIqG0pa0,2569
|
29
|
-
scout/adapter/mongo/variant.py,sha256=
|
30
|
-
scout/adapter/mongo/variant_events.py,sha256=
|
29
|
+
scout/adapter/mongo/variant.py,sha256=1vfvspPOOPyXjpiQ-dJdnDa6ExWpas7ZMTCyL6o5cCg,35208
|
30
|
+
scout/adapter/mongo/variant_events.py,sha256=yNnMM58P1LbYFw73rWzti6l2zWa_G93ozUTbVkcz4_I,33475
|
31
31
|
scout/adapter/mongo/variant_loader.py,sha256=C05StRMFVChopcolPYXFIbh_S-FhYHu4NvBCpiBLOeE,28327
|
32
32
|
scout/build/__init__.py,sha256=GUWEaXTpwsJil_KtrXBQJpZIwCQFSgo8NlK49R9IkA8,521
|
33
33
|
scout/build/acmg.py,sha256=M21MrrP_dtEyOuu6t-jBDdaqYcHPMLcwJlt9fHG2ycE,1523
|
34
34
|
scout/build/case.py,sha256=7Hry6ja0KvVhNQ1ecXy3HuaR7dY2x9O8f8FpYt4P6jo,11404
|
35
|
+
scout/build/ccv.py,sha256=cfAWSQ5cSBWURkL9_fPm1Y5aRcTIDOE9ieSWaYLufB4,1660
|
35
36
|
scout/build/disease.py,sha256=Zew9AF_z1NbbKcO3uJZ2wgni501SkfnYRgnaCZ4m8FY,2020
|
36
37
|
scout/build/hpo.py,sha256=LJBCTq-x09D0CSKcUHB8a6ynuUrVh_7Ia0ooA1BxMys,1207
|
37
38
|
scout/build/individual.py,sha256=a2L1NJF11oGaOU9LilWN5gftSyIRfk7H231mF2Y67WU,5232
|
38
39
|
scout/build/institute.py,sha256=CZKn-cFbh0cWO2ySoRV_P1nYFizlyvu50LKrtAz-PLo,1330
|
39
40
|
scout/build/managed_variant.py,sha256=krcQBc4LLxlnUQwXuV2FxNLiSkMoIkLxQueYFl04Vyo,1666
|
40
|
-
scout/build/panel.py,sha256=
|
41
|
+
scout/build/panel.py,sha256=smhtynG_ggNgUyuAGqg_-m1UMnBHhrk2ALutYoNTTec,4273
|
41
42
|
scout/build/user.py,sha256=Df_k2H4CxR80yqmgVvl3u3YC9ikr33BLH5fGkxZ3Mlw,942
|
42
43
|
scout/build/genes/__init__.py,sha256=AbpHGcgLb-kRsJGnwFEktk7uzpZOCcBY74-YBdrKVGs,1
|
43
44
|
scout/build/genes/exon.py,sha256=a0oyW69x0tTImu4rxce5pU3Cb_GLSIdbexU0ex_OH7Q,2256
|
@@ -54,7 +55,7 @@ scout/commands/__init__.py,sha256=VrenBj1daCAnIsBZtvdbv1SuxmODT_TTY8YcxWItrXE,22
|
|
54
55
|
scout/commands/base.py,sha256=WmUko96zsPbC3cUIezy0CAOOGKBFU-BoW-BPAhLORCE,4610
|
55
56
|
scout/commands/convert.py,sha256=T5dkFjRKSTf7dBS9uKIW4wEmdL13vKzKTLRy4nvf6Vg,1090
|
56
57
|
scout/commands/index_command.py,sha256=QTBU7LT2YldDBXuWCVdTH5FlQgRB6BCdiYoFrPo08NU,1149
|
57
|
-
scout/commands/serve.py,sha256=
|
58
|
+
scout/commands/serve.py,sha256=OZRHJrvlIXz1NQ1NHB175TxTxgpblybIPIob0PIvDXk,1554
|
58
59
|
scout/commands/utils.py,sha256=T29f-1wTq3uoxqtv6QOqBdMBl7tLeEn8DYXnnv3gowI,306
|
59
60
|
scout/commands/wipe_database.py,sha256=TvCoXZCT-mvTqsZaFstV5u5FM8KAQstB3JxyGHYMLtg,1005
|
60
61
|
scout/commands/delete/__init__.py,sha256=6Z97FsWMqyKqF64Anl1zwljVNTfjJUCI7yylxIEnsUY,35
|
@@ -124,15 +125,16 @@ scout/commands/view/intervals.py,sha256=8Pofxy0DwL2Euh3SdnTLLWsU6DjLNOwIGdxeCS83
|
|
124
125
|
scout/commands/view/panels.py,sha256=a0fQcP9-SDPuRYV7aEgIGUCYaMN6V47h6finpcdoomU,1098
|
125
126
|
scout/commands/view/transcripts.py,sha256=59WyNNp7zHPJIz9QgzrkoeKaSXTtuLli0VuL8IidEmY,1277
|
126
127
|
scout/commands/view/users.py,sha256=MKlmhDYRM7Yf-Trmi1ijEuqsDIUn326bdFADyDs7XYg,832
|
127
|
-
scout/constants/__init__.py,sha256=
|
128
|
+
scout/constants/__init__.py,sha256=ke7uVYgqn6dqByEQdfLQ1H061yOvaNyt8E-WP84Dgr8,5854
|
128
129
|
scout/constants/acmg.py,sha256=hYPzoLUqpuTjGXfIN80Nb1njriesH9oAELu1scp-ByU,18083
|
129
|
-
scout/constants/case_tags.py,sha256=
|
130
|
+
scout/constants/case_tags.py,sha256=O-BwEzU36MSpN7qqd-aSvoi4-VDRY8rM5hQ7Jg7DMgs,9447
|
131
|
+
scout/constants/ccv.py,sha256=YP82qWCrjv3JB8d2LkUdBlBZolk0uF3nhNmkNgmebiI,9734
|
130
132
|
scout/constants/clinvar.py,sha256=nr7KhwMIO_7taNQokRJlpgZfenMlKsdPIMpdOx3TwKY,5594
|
131
133
|
scout/constants/clnsig.py,sha256=TSeZjUno2jEvQTenrltZ900ZFYIRNoul_Wm2qRjvpPA,1493
|
132
134
|
scout/constants/disease_parsing.py,sha256=M9_OgsN88oXwKH_XpxdDma0zuWPRoHFQjL19tzojBPo,686
|
133
135
|
scout/constants/file_types.py,sha256=3BU2cw40cHMT5IzEGEF_SsIhgYUbnIlUCRmwmB01fzI,3046
|
134
136
|
scout/constants/filters.py,sha256=1bcj-z7__yv5eQpjB60wqSHZ3U5U0CVyNbcYT-Wn-vc,957
|
135
|
-
scout/constants/gene_tags.py,sha256=
|
137
|
+
scout/constants/gene_tags.py,sha256=CpUH13UOVZrYGXTKXS667u0So9j1A4Ig4KNGYdrDtLk,4513
|
136
138
|
scout/constants/igv_tracks.py,sha256=NbBBnM3s1S8cJM_S36qi7SU2ACW_lJVS6EP2W0kCTIQ,4697
|
137
139
|
scout/constants/indexes.py,sha256=mCj_ih9Sv7Qv4DrzLRH30EQZ-Tgyn_Sf6NYapCOlMOc,5793
|
138
140
|
scout/constants/panels.py,sha256=X38XGPlNgOGhXHt5mSpryOS7gMeP-tUD1t1WIT2G5wM,785
|
@@ -155,14 +157,14 @@ scout/demo/643594.clinical.str.vcf.gz,sha256=ElvicUseKkN-DiZOQrFXstxy2jo9lhVMn58
|
|
155
157
|
scout/demo/643594.clinical.str.vcf.gz.tbi,sha256=pyWRI8-DlfGw08S66nYqLOthbaRaNMpAhUACm48iM5A,1695
|
156
158
|
scout/demo/643594.clinical.vcf.gz,sha256=KpGBJPNfqOEE0uOkdldAeFRxdmPMPIlksiypXRhtOoE,409450
|
157
159
|
scout/demo/643594.clinical.vcf.gz.tbi,sha256=Pr1XyC4gonboAlTasdT-a7w7T8bNQXjV_G5hVdC9dy8,7732
|
158
|
-
scout/demo/643594.config.yaml,sha256=
|
160
|
+
scout/demo/643594.config.yaml,sha256=9L0UkAc3Wh8QseQWl_GsGKPI-tXofLijLknxQV0c5xk,5518
|
159
161
|
scout/demo/643594.ped,sha256=P-k5eZY78ZRtajMDQ_rr7Xv5oFhBO-vDc7whg36Jnw4,154
|
160
162
|
scout/demo/643594.ped_check.csv,sha256=36HoP13haqQerTEHuJF4R2r6Vh2AQilS1NTr7X6aoZs,444
|
161
163
|
scout/demo/643594.peddy.ped,sha256=msfhM3u_5hK_zjHhMas5Ns_KREllRyHN3kdTIVl5J-c,421
|
162
164
|
scout/demo/643594.research.SV.vcf.gz,sha256=MBB0y_RVKGaoAuILhHue8B1CX8ZQog53O1zRqSK08vg,11927
|
163
165
|
scout/demo/643594.research.SV.vcf.gz.tbi,sha256=_4-Oz7kICi7XdCh8T0g3y-iorJbK3i0ieSu5DUdE-1s,1284
|
164
|
-
scout/demo/643594.research.mei.vcf.gz,sha256=
|
165
|
-
scout/demo/643594.research.mei.vcf.gz.tbi,sha256=
|
166
|
+
scout/demo/643594.research.mei.vcf.gz,sha256=5QdZ0CJIEBIgmxgsn0o1eqd2yzsWSR0G3ZoPAFTx_JM,21068
|
167
|
+
scout/demo/643594.research.mei.vcf.gz.tbi,sha256=VLNUA2ht23ODbqAcqIpG0f0uWtYCLw9bGmLyY66jZzU,1417
|
166
168
|
scout/demo/643594.research.vcf.gz,sha256=ZutsU-JBbTyxPED_WsBPkVw31Ua-3WhsLL-w-iK1CBs,440072
|
167
169
|
scout/demo/643594.research.vcf.gz.tbi,sha256=SvYOfbwZKobAhBufsxkkQvDVVuAvBAAQcvwQmbLWY5g,7702
|
168
170
|
scout/demo/643594.sex_check.csv,sha256=Nwr8cpaJ1BNuTvbdpQMUWa6IDyND0d6J6WI-C65LA7Y,239
|
@@ -324,9 +326,9 @@ scout/demo/images/chromograph_demo/upd_sites_9.png,sha256=tp9Iq4eSgsVrNCbqelwRpE
|
|
324
326
|
scout/demo/images/chromograph_demo/upd_sites_M.png,sha256=I7EOWQ_uvm2LA2ACf68KBTihwIjWp4-EB1CUAOqkmQ0,97
|
325
327
|
scout/demo/images/chromograph_demo/upd_sites_X.png,sha256=8cC5CGlkHeUmxL6f-wbRDjf78SV-bcKD5x4crSgDXP8,2110
|
326
328
|
scout/demo/images/chromograph_demo/upd_sites_Y.png,sha256=I7EOWQ_uvm2LA2ACf68KBTihwIjWp4-EB1CUAOqkmQ0,97
|
329
|
+
scout/demo/images/custom_images/1300x1000.jpg,sha256=j76cvbyBBmNEGwxjqeBO2SEv1XViy1OZCnLTXj8EhVM,36326
|
327
330
|
scout/demo/images/custom_images/640x480_one.png,sha256=Dkjhu5BUW8EN8LzJIKx9lhALRus5BdIgvSTthGuZ2Ck,2310
|
328
331
|
scout/demo/images/custom_images/640x480_three.svg,sha256=r67CMchC-E5kpGoqSNnIzTqrzmzM8-eS5OzHtskGSoo,445
|
329
|
-
scout/demo/images/custom_images/640x480_two.jpg,sha256=iKFAB2qfBA0D4L0JnYbyqUmPXRC8_YvofnuCCA0swcs,9076
|
330
332
|
scout/demo/images/custom_images/replicons/640x480_AR.svg,sha256=r67CMchC-E5kpGoqSNnIzTqrzmzM8-eS5OzHtskGSoo,445
|
331
333
|
scout/demo/images/custom_images/replicons/640x480_ATN1.svg,sha256=r67CMchC-E5kpGoqSNnIzTqrzmzM8-eS5OzHtskGSoo,445
|
332
334
|
scout/demo/mitodel_test_files/earlycasualcaiman_lanes_1_sorted_md_mitodel.txt,sha256=FQkn0H-tid7-IxOLgNb5ChhT2O6sGurnuE9_LPlgGEs,63
|
@@ -373,7 +375,7 @@ scout/load/hgnc_gene.py,sha256=GcSQ01CioYIshAzXAv4msIGDPjTjGBBPBnLX2GvaZJ4,4507
|
|
373
375
|
scout/load/hpo.py,sha256=ZWYjV9j6OfpI-ZZuhTQVEs_xgLa7ST2KuvYLW6ku0PY,2474
|
374
376
|
scout/load/institute.py,sha256=etmZ0CZRHOVi3f9R-wn5BK1pZPhtZwq2QYbh2RXXxDc,625
|
375
377
|
scout/load/panel.py,sha256=MY5M7-lDzVXt5RJH87N28TB7awdM6s-SoawholTl2GM,4776
|
376
|
-
scout/load/panelapp.py,sha256=
|
378
|
+
scout/load/panelapp.py,sha256=gE1WjT1XZQV_Pom15Fj1poYkYiQK75z_bBm9SN0d-Ow,5290
|
377
379
|
scout/load/report.py,sha256=TJvblks6Dp5-UDflWRTa8b3fe-A4bT4QnWT2yZLhfLA,820
|
378
380
|
scout/load/setup.py,sha256=Xu-m59rJW5bF6Agf6XdiEo_Ik4ZAFfN0tF2FjLIMYAY,8218
|
379
381
|
scout/load/transcript.py,sha256=mk0Da7GWwqLVRp2xRD9mlzqaomH9R-TL2aKCJx4fEA8,4632
|
@@ -382,6 +384,7 @@ scout/log/handlers.py,sha256=HBwcJkiBZxkiJYwacBMIuxuKaodo6nfjQeQokiVEa8s,1378
|
|
382
384
|
scout/log/log.py,sha256=EPtd6Z1HMSvmuDHdElLUcLhPsz36LNQSX09Lg3m1jCY,1549
|
383
385
|
scout/models/__init__.py,sha256=xfMJsbQbGB1ZMa5zhS0S_R0udxZ4PX8h24NtnJ2gIt0,117
|
384
386
|
scout/models/acmg_evaluation.py,sha256=Rn8GvbcUjMS1ZjDaPxuxn2cwWuESxeHOadZn4SREyeo,676
|
387
|
+
scout/models/ccv_evaluation.py,sha256=nJlT2THRUbDQgwDuoorOiOkIof-zDa95PyPdubovQBk,691
|
385
388
|
scout/models/clinvar.py,sha256=fTmQYV3yRxQn1JBOwKnovYmkl19H14HKRE2zY9JA93U,3102
|
386
389
|
scout/models/disease_term.py,sha256=KFrIkoyImhVDf4YAMYyluQZvDE9GNEa533M_4IMeIlQ,803
|
387
390
|
scout/models/event.py,sha256=2v9K7hbSa6bgadolGnGL7OymSibNGRyTZXlnL_SrFTM,1863
|
@@ -399,7 +402,7 @@ scout/models/case/case_loading_models.py,sha256=GNeXZFrJ_1ISSxqO2VpKXazCLksLsPbT
|
|
399
402
|
scout/models/variant/__init__.py,sha256=H-IZ2hSTSVS28S8FZzA8j2Cyu1PHQFXyMWJFtCucPAk,40
|
400
403
|
scout/models/variant/gene.py,sha256=98CG_JcAklGGFIrUulf1_olQalV65kXQO-gOf7VQZ0A,1095
|
401
404
|
scout/models/variant/transcript.py,sha256=rfflEbTs7Bn4HDENqrxtGopQ_0HKnrVLLyBcrj4NpwM,1720
|
402
|
-
scout/models/variant/variant.py,sha256=
|
405
|
+
scout/models/variant/variant.py,sha256=SppFVdCYrlZiMBce38YrAykYZZ-0el3DzrArJHtC1yU,4473
|
403
406
|
scout/parse/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
|
404
407
|
scout/parse/case.py,sha256=-sGKWYWcskMagrDpEoeCIAJacwCR2feC8SwWvT0FJVw,11577
|
405
408
|
scout/parse/cytoband.py,sha256=7flY3b_wegupHHBLRcs4KyM1ns-uzuTfVHm4CycnupE,1055
|
@@ -411,10 +414,10 @@ scout/parse/hpo_mappings.py,sha256=UJY38iLmpJFnZ9FuRaNIGhNQnTx7_WASxr9mlEnhvHE,2
|
|
411
414
|
scout/parse/hpo_terms.py,sha256=ZJCKFD0rV3jiCuoI8Gm1WNTiaOSRRoKOhZ1bYnqwY6I,5732
|
412
415
|
scout/parse/matchmaker.py,sha256=eeAfyB8ObLIKveUL50i3YTBeZphqYhMCiz-4t2-dATI,9852
|
413
416
|
scout/parse/mitodel.py,sha256=3uvEXI9v9wIw97NUL7gqLLxHay0mpQpDgKaIxUbIyrE,803
|
414
|
-
scout/parse/omim.py,sha256=
|
417
|
+
scout/parse/omim.py,sha256=Qgzx3xoQ-HoVrvjE9QlbjlKgNPBb9kF028F5foko0ow,12428
|
415
418
|
scout/parse/orpha.py,sha256=5u9xqGpAn8vgoJ0uVqbYiqQBiNfBwXOiTzX16kAnmFU,4392
|
416
419
|
scout/parse/panel.py,sha256=J28e_MkKeB5r4hOutb3qimxUT7G5yg8x1Ca4bAs0I_c,9577
|
417
|
-
scout/parse/panelapp.py,sha256=
|
420
|
+
scout/parse/panelapp.py,sha256=xXU2QYTVEr9ksUBCqzdjfGqC3w95vAwrlk9qbZSrq1k,3112
|
418
421
|
scout/parse/peddy.py,sha256=uM49GaZMtr8waCsZDvCHDS5JDQ43JUlhdWh9C7f7ZvU,5418
|
419
422
|
scout/parse/smn.py,sha256=iOK1N8iYm9dFigsKtWq0Y0ZCa1CH29s9zeR_tH0bPuc,1153
|
420
423
|
scout/parse/omics_variant/__init__.py,sha256=vq8Ew4_Xr2vPy_3Fg0eTpPWsQpWnUXYBhjRndBUvtTw,422
|
@@ -422,7 +425,7 @@ scout/parse/omics_variant/drop.py,sha256=SD98E9ksPPv62SFUuR4TfZHVIIIy1RXZRdMhm5H
|
|
422
425
|
scout/parse/variant/__init__.py,sha256=5yqCQlAYMqosRabdipFUXqopSMBN4X6jwpNiKiYKlsE,35
|
423
426
|
scout/parse/variant/callers.py,sha256=eA5o4Ov_v5ds__4xpif1ttj5yk2nK4GXwhYSWL4NTDg,5709
|
424
427
|
scout/parse/variant/clnsig.py,sha256=dFIvV29cvMOFw7hSgbjBEXzWV5YVKpSGQqgLuHbMePk,5421
|
425
|
-
scout/parse/variant/compound.py,sha256=
|
428
|
+
scout/parse/variant/compound.py,sha256=6M60DrZk8A7-X3ICGEAVpWyjLC_UgXcK1zd_o7Cuemg,1502
|
426
429
|
scout/parse/variant/conservation.py,sha256=8eHXy57g6ng0eMo38LsIcQ8w_H5mpBSfiMuaXF7aBi4,2949
|
427
430
|
scout/parse/variant/coordinates.py,sha256=CU-EyD8NVgTbyIdmYDO3k-zVaMN1EDONjorDwyUSnXU,4742
|
428
431
|
scout/parse/variant/deleteriousness.py,sha256=zeFzx218GL-5pKniyci7MVHj3a1cep4nmvoSg7u0ogA,541
|
@@ -439,11 +442,12 @@ scout/parse/variant/variant.py,sha256=nf_0q2J7TryWhB-Oz697HYSDJTPNmkXnPHmKtjhHQU
|
|
439
442
|
scout/resources/__init__.py,sha256=i9UVG651subgmOZ-Gm-JKPsXBqr5-50QUDfSpbwmwIw,443
|
440
443
|
scout/resources/cytoBand_hg19.txt.gz,sha256=pheUD5b9NlVuvwwnbKwDc2FG80Yg70gvPxVXP-Sqd3k,6147
|
441
444
|
scout/resources/cytoBand_hg38.txt.gz,sha256=sqSVmvPlktQ-0hTiTapJM-5UgyV6xDoYZuTF0kPuETs,6105
|
445
|
+
scout/resources/custom_igv_tracks/mane.bb,sha256=flEexDxHmbX7IwwrMM0P5DWOxcSCjmHxGNlyg_WqElQ,3519360
|
442
446
|
scout/server/__init__.py,sha256=iwhKnzeBJLKxpRVjvzwiRE63_zNpIBfaKLITauVph-0,24
|
443
447
|
scout/server/app.py,sha256=70YdN9eWL1ySEYkuAHKOk_WA4Fm5dcIwtIZEcEf-xA0,10836
|
444
448
|
scout/server/auto.py,sha256=8B6GwfOaUChkTLuLgYQDFMWlxGuHkEegF1argH2G2Ik,401
|
445
449
|
scout/server/config.py,sha256=BFx6ix8D3KM90FqmaHLxv_feudO2kN2CkX1UWBGTjXE,5923
|
446
|
-
scout/server/links.py,sha256=
|
450
|
+
scout/server/links.py,sha256=f2h_zUFt4Tm_383ZmdIGsA6mUVQbpQmJ199ZTzUWemE,28115
|
447
451
|
scout/server/utils.py,sha256=d1fGdSwo-XjNHVjHd-uT3mGmUJ8yYB6weT7VgHo9nxM,12592
|
448
452
|
scout/server/blueprints/__init__.py,sha256=iwhKnzeBJLKxpRVjvzwiRE63_zNpIBfaKLITauVph-0,24
|
449
453
|
scout/server/blueprints/alignviewers/__init__.py,sha256=XMVed2ekVUAvroqENDHSr2pwM8otqau8ZA-rbH1T2U8,59
|
@@ -456,29 +460,29 @@ scout/server/blueprints/alignviewers/templates/alignviewers/utils.html,sha256=x2
|
|
456
460
|
scout/server/blueprints/api/__init__.py,sha256=HR6HjS7ot1K_8Lt5eQdNT154z_FCdHGSigy8r2LpNCI,26
|
457
461
|
scout/server/blueprints/api/views.py,sha256=pbl78wfhrm1T8JmiJDYF3BbTbfFrlF-hQRbuv2GWI0s,3729
|
458
462
|
scout/server/blueprints/cases/__init__.py,sha256=_c17kPFITFYcIVphF4V9bf0PZBer8bU3rtVWQnljKDU,52
|
459
|
-
scout/server/blueprints/cases/controllers.py,sha256=
|
460
|
-
scout/server/blueprints/cases/views.py,sha256=
|
463
|
+
scout/server/blueprints/cases/controllers.py,sha256=UzzFpDfS66f2ZL7cwDdpDFFRR_OtJzds9kc7Wx0U0wc,55747
|
464
|
+
scout/server/blueprints/cases/views.py,sha256=MQDOnLuywAQkVBgYaZAbaj9f6tps18bpo4nDFm77S4s,43165
|
461
465
|
scout/server/blueprints/cases/static/case_images.js,sha256=pb_gG7DNQc-1lADqSII8YvjBwmHyeQWYVtuu2jyrTlU,14997
|
462
466
|
scout/server/blueprints/cases/static/case_styles.css,sha256=2Pgc8pFf9DR5HM1sTdAjaRWhjL-bK5bsQnLpH54HZak,541
|
463
467
|
scout/server/blueprints/cases/static/edit_pedigree.js,sha256=ntC5fie7SsOYJau8qkke1UHxjiYWY_gBzWcIkGpdJUA,2978
|
464
468
|
scout/server/blueprints/cases/static/madeline.js,sha256=KHxKMBVlYVJODNu5QkY9hhsGkDJNoaCoCZZ0DRu0YN0,1175
|
465
469
|
scout/server/blueprints/cases/templates/cases/case.html,sha256=9Fcn-OFA1yIHchD0PjDs7-Y8I7Qqr8o6cavN0eOi5rI,37183
|
466
470
|
scout/server/blueprints/cases/templates/cases/case_bionano.html,sha256=PLoRv7hDJcHwxhi-0hC9fQSZc7V_aUYHBhhQqcn_2G8,5946
|
467
|
-
scout/server/blueprints/cases/templates/cases/case_report.html,sha256
|
471
|
+
scout/server/blueprints/cases/templates/cases/case_report.html,sha256=-ATAfUnT4a6dmdUSFuGjGPK7r6_XgOXPJtC-Lu8hOgs,66304
|
468
472
|
scout/server/blueprints/cases/templates/cases/case_sma.html,sha256=99rmRyDXFXjooB52TI5_ebJKv1ZAJbVXEw4deHfSVMA,7285
|
469
473
|
scout/server/blueprints/cases/templates/cases/case_tabular_view.html,sha256=ko-LDUKmIoTazMZ2nFWvPEZsgObU07RwqIkDYFjokoY,4317
|
470
474
|
scout/server/blueprints/cases/templates/cases/chanjo2_form.html,sha256=5Wmk7DM8LI3MynqzxeTzAr_EoEBwVVo31djcI5ZlTdo,2164
|
471
|
-
scout/server/blueprints/cases/templates/cases/collapsible_actionbar.html,sha256=
|
475
|
+
scout/server/blueprints/cases/templates/cases/collapsible_actionbar.html,sha256=H45WZK2qVY47wgttdASjRooRKFs2wQXAnH18u80hRfg,30895
|
472
476
|
scout/server/blueprints/cases/templates/cases/diseases.html,sha256=ETTQI0Nrl_v86NoX9mFZcvWD-qM1IJoqPmHPWn__Grw,1677
|
473
477
|
scout/server/blueprints/cases/templates/cases/gene_panel.html,sha256=lkC_Piqaq-paYr4GUCwQaR8EgGOUXDMoW5sPLDW7yzg,11628
|
474
|
-
scout/server/blueprints/cases/templates/cases/index.html,sha256=
|
478
|
+
scout/server/blueprints/cases/templates/cases/index.html,sha256=y91d7yI64Fbz7wS8CSsi3vcCo6rFmS0mnstUipnVHUQ,1136
|
475
479
|
scout/server/blueprints/cases/templates/cases/individuals_table.html,sha256=wjcrPMYXZGRWxM0GzHwbLmsOPWtmke9p2T22ngCBMyU,11460
|
476
480
|
scout/server/blueprints/cases/templates/cases/institutes_sidebar.html,sha256=u0oPGHJ0ipZ1LkjHkbwlWfkUWc1h6XH1nh3tkbX17z0,4546
|
477
481
|
scout/server/blueprints/cases/templates/cases/matchmaker.html,sha256=kPYnmcZJ1gmx_guW52H7baT9Sw4WE0VJmLGF6N7Z3iA,13639
|
478
482
|
scout/server/blueprints/cases/templates/cases/phenotype.html,sha256=7vz5XPUExD6vc-wdijLKnPzaOFm9mQxOZ_ITAL3y7U8,16420
|
479
483
|
scout/server/blueprints/cases/templates/cases/utils.html,sha256=gHcxf3DOGcJJZMfjKY4NgvU_tjta5OnyWrKZy9pfGyY,35981
|
480
484
|
scout/server/blueprints/clinvar/__init__.py,sha256=BV3aH2AbiA2WWrUEMbGd0H9MefFd2eTsRE9ShywbzpI,30
|
481
|
-
scout/server/blueprints/clinvar/controllers.py,sha256=
|
485
|
+
scout/server/blueprints/clinvar/controllers.py,sha256=lCrVlokjnSURvsYkm6sTMxrZOL1Xj3VQAWbYr1o_mEY,24251
|
482
486
|
scout/server/blueprints/clinvar/form.py,sha256=2h42YJzaOtsdEglxqt7F1i2ncjSU_IHNt-m4QOJytK4,5148
|
483
487
|
scout/server/blueprints/clinvar/views.py,sha256=hPyTJA7Qy6QOL-ENSG1N0atnQXuYCb-iiO8fuNDjJns,6036
|
484
488
|
scout/server/blueprints/clinvar/static/form_style.css,sha256=Tro2w0Su9st2ZRpt8PjF7qXYet-0n6Eyol4oh94JafU,4073
|
@@ -504,23 +508,23 @@ scout/server/blueprints/genes/templates/genes/gene.html,sha256=a--c-IjzNKN_JW7z9
|
|
504
508
|
scout/server/blueprints/genes/templates/genes/genes.html,sha256=x6jXKijvuEX9GvIedHW4O_BerYXiWEmAdYT0HTiGnhI,1130
|
505
509
|
scout/server/blueprints/genes/templates/genes/layout.html,sha256=cZMLe2cInq24z0sZpPxDm_kEiAe5VQbOR-8XWn6wlvI,1601
|
506
510
|
scout/server/blueprints/institutes/__init__.py,sha256=kGSyYrBC1QaEQBDdoMkMLfaowV7roaV5DowICi_0RSQ,65
|
507
|
-
scout/server/blueprints/institutes/controllers.py,sha256=
|
508
|
-
scout/server/blueprints/institutes/forms.py,sha256=
|
509
|
-
scout/server/blueprints/institutes/views.py,sha256=
|
511
|
+
scout/server/blueprints/institutes/controllers.py,sha256=qu8bonz74Ff-nTevOy4BaLhYrXbgD4rZEc81NvBkK_w,34055
|
512
|
+
scout/server/blueprints/institutes/forms.py,sha256=7ixKPYewR24lnM9vwGNS9EcBHR6072kPRuvE0jk6acE,6685
|
513
|
+
scout/server/blueprints/institutes/views.py,sha256=PSpf82kW0EKZc24CPhBhuE-wXXGyIz-R6IJu7IM0IrM,9052
|
510
514
|
scout/server/blueprints/institutes/static/form_scripts.js,sha256=8Sn7omeXeeUbiXJPfT0Qb4CaBJ_KtZZWw7N2he7EDx0,747
|
511
515
|
scout/server/blueprints/institutes/static/select2_darktheme.css,sha256=Nq_va597W_e5y-52B4ClwSJzACq0WFbPU8SIp3DtKIo,1818
|
512
516
|
scout/server/blueprints/institutes/static/timeline_styles.css,sha256=Vq48ffIidpQmDQhAzfW47O9mGQZEWdlbMtOE8AK-ZEU,2122
|
513
517
|
scout/server/blueprints/institutes/static/variants_list_scripts.js,sha256=gO_ZuJC2jj7Y9x6CEVEVhN1oIE4bIWrTY0_zVcsbRbY,236
|
514
|
-
scout/server/blueprints/institutes/templates/overview/cases.html,sha256=
|
515
|
-
scout/server/blueprints/institutes/templates/overview/causatives.html,sha256=
|
518
|
+
scout/server/blueprints/institutes/templates/overview/cases.html,sha256=GOt1Y2PZLVigL3wqi5NAJFqIjQHgaocrbJzFcCUzOfY,12900
|
519
|
+
scout/server/blueprints/institutes/templates/overview/causatives.html,sha256=192pgqUSXQF4qhC933qsYtTwvmlqDctxwHcArERkHc8,1619
|
516
520
|
scout/server/blueprints/institutes/templates/overview/filters.html,sha256=Dzu5YicmdjW_zGqbCUrb8TMbSUuRaG47itTMwwX7Bm8,3102
|
517
521
|
scout/server/blueprints/institutes/templates/overview/gene_variants.html,sha256=EyhBZEdMZQBaJWR_FDeabuWXRSd4Xcqh0teaxVyNvAE,8442
|
518
522
|
scout/server/blueprints/institutes/templates/overview/institute_settings.html,sha256=EqOek5bso0wKqeEnUPW1z2mIpwRl8kuFyDKHJZ0FJx4,5014
|
519
523
|
scout/server/blueprints/institutes/templates/overview/institute_sidebar.html,sha256=vQQunXH2Cr8-z2Kc7uTCzsSqIX14Xld44NWqdhpw-Hs,4304
|
520
524
|
scout/server/blueprints/institutes/templates/overview/timeline.html,sha256=upTv7v4sUwxGfJDSyk8F5zPb61dedG66zgfvh_SMR4M,2289
|
521
525
|
scout/server/blueprints/institutes/templates/overview/users.html,sha256=6dkbDBNLw2b97M2Pd8JImpPoT3FLTcl84oBN3inLJRg,1134
|
522
|
-
scout/server/blueprints/institutes/templates/overview/utils.html,sha256=
|
523
|
-
scout/server/blueprints/institutes/templates/overview/verified.html,sha256=
|
526
|
+
scout/server/blueprints/institutes/templates/overview/utils.html,sha256=9W60kUmIRPsu_JX0kDMg0hkz8CUY8vn2MdoegRAMqFc,33199
|
527
|
+
scout/server/blueprints/institutes/templates/overview/verified.html,sha256=qxZ8mIPX00ZXIy_5eLO2QmLrjJZrhw97kdXBZxpRj38,3363
|
524
528
|
scout/server/blueprints/login/__init__.py,sha256=uDzQjNNrMloZ4-i-1cEW7d59FZ--Xy89b-Xn5SvyC1U,52
|
525
529
|
scout/server/blueprints/login/controllers.py,sha256=bg0me00OvwYJiTm4dZnbl8eyRRRDquBMs5U7_YV4xWI,1883
|
526
530
|
scout/server/blueprints/login/models.py,sha256=w0ELh33rX1zwEnzZE-nhaoB6Z1JfgWxzWJ43JFJJo4s,688
|
@@ -536,19 +540,19 @@ scout/server/blueprints/login/static/superintendent.svg,sha256=fEjo8KtKh56ge7jWA
|
|
536
540
|
scout/server/blueprints/login/templates/login/users.html,sha256=ClMOKE7jlSAWHa5d1bXb5RKrE0kmCZETklFYj2CDo98,1858
|
537
541
|
scout/server/blueprints/managed_variants/__init__.py,sha256=wpDezF_TYKSRkrUGX_aWxdpITMvKvnNqWQtuy6YV1bI,63
|
538
542
|
scout/server/blueprints/managed_variants/controllers.py,sha256=HQ9jkTMzVEBLEmswXE7lg8Zj05ENshZeirzIpxm52lk,7281
|
539
|
-
scout/server/blueprints/managed_variants/forms.py,sha256=
|
543
|
+
scout/server/blueprints/managed_variants/forms.py,sha256=DmG0KuY82R1pRIUC7niJFQqFuZCDB4x-vj6635hFliQ,2590
|
540
544
|
scout/server/blueprints/managed_variants/views.py,sha256=wHOClPy2ZCIQvandia90kG6I6IPhxKVOiAnG4esXh-0,2473
|
541
|
-
scout/server/blueprints/managed_variants/templates/managed_variants/managed_variants.html,sha256=
|
545
|
+
scout/server/blueprints/managed_variants/templates/managed_variants/managed_variants.html,sha256=jrhcdUODlhWHiAgVeHowJ0c0wWDYFIU5iMO1oWjsG-A,17311
|
542
546
|
scout/server/blueprints/omics_variants/__init__.py,sha256=8UVXrChArhIvMxtgUcG-udvmlTn56q41iy-naOZw5us,37
|
543
547
|
scout/server/blueprints/omics_variants/controllers.py,sha256=AnM70stvLniJIU3pFUX-InNjuT-7K0RpuAEYa7vM-jw,3912
|
544
548
|
scout/server/blueprints/omics_variants/views.py,sha256=P-mo2S1RBGYxsNCFqSTNQNLvqiH9r6_AoZgsOWpopPE,3817
|
545
549
|
scout/server/blueprints/omics_variants/templates/omics_variants/outliers.html,sha256=gv9llZzH-AKJ4i2XJKZFJi9IBgvF84WI7QCVuvFOhTA,13703
|
546
550
|
scout/server/blueprints/panels/__init__.py,sha256=usxBF0O7zNX1d9jt-8DRoFZwcfHHS96Gv87LDr1AgG4,53
|
547
|
-
scout/server/blueprints/panels/controllers.py,sha256=
|
551
|
+
scout/server/blueprints/panels/controllers.py,sha256=_LXiayDyGcyRQ3Hw13fD8zVYFQ1jIIXUMQ49WsimrZ8,12618
|
548
552
|
scout/server/blueprints/panels/forms.py,sha256=DYlhYpnpv7ehf9JlY3HRFwy-TZ5QDHB0RIRaNTAW1jQ,696
|
549
553
|
scout/server/blueprints/panels/views.py,sha256=NN7jRPLK0mbdR0ERh7DgDHdqM4jAHeghG5O4P3II_ew,15772
|
550
554
|
scout/server/blueprints/panels/templates/panels/gene-edit.html,sha256=KqdUdu93707upLxh31Bwxgd1w4kH-WHtVilSNmAqiRo,3627
|
551
|
-
scout/server/blueprints/panels/templates/panels/panel.html,sha256=
|
555
|
+
scout/server/blueprints/panels/templates/panels/panel.html,sha256=MBIxXLQ71Hs5TxJEWLzhnX4Q8YMGqA5EECz-Agn3tyA,16656
|
552
556
|
scout/server/blueprints/panels/templates/panels/panel_pdf_case_hits.html,sha256=uzfZJiMNQiTa_6u4uMuIbK3VXIs-8Rw-MjKujFttZG8,3438
|
553
557
|
scout/server/blueprints/panels/templates/panels/panel_pdf_simple.html,sha256=cpOnQzeKYnQwXosTKk9hkiBigJJLS3Q_y2oHDR3C8io,2744
|
554
558
|
scout/server/blueprints/panels/templates/panels/panels.html,sha256=2IEZFbXzp4MKbx-9UZTW8rZt8pl3iZXPlkvppS3sj0Q,14106
|
@@ -600,37 +604,38 @@ scout/server/blueprints/public/static/ideograms/chromosome-X.png,sha256=Dj7npcW_
|
|
600
604
|
scout/server/blueprints/public/static/ideograms/chromosome-Y.png,sha256=KlOsBLZYFVHRvXvTioT-XE57zSWoYeIwIEXo_rzLBR0,1524
|
601
605
|
scout/server/blueprints/public/templates/public/index.html,sha256=-c6-r2G6-cdE9PLV126V8zTwYmApI88UIQKWuVP6HP4,4268
|
602
606
|
scout/server/blueprints/variant/__init__.py,sha256=SlD8-Aoj9Jq9aVTJjtFfsu-0sUVfkzpiEXcH8z9q6dI,54
|
603
|
-
scout/server/blueprints/variant/controllers.py,sha256=
|
604
|
-
scout/server/blueprints/variant/utils.py,sha256=
|
607
|
+
scout/server/blueprints/variant/controllers.py,sha256=dnx5YFVF62V2kAspfGpw0Mr0qUH1VoU1EBTP1hvIlZM,29691
|
608
|
+
scout/server/blueprints/variant/utils.py,sha256=BMezzz9Y9ZoGMaLKRbQopJUkWWUo1M9Xi-pw82Vdm4k,25079
|
605
609
|
scout/server/blueprints/variant/verification_controllers.py,sha256=eKzP222e7xuFOaQaI9MLOrD9RWtI8uGB1cJYbcXLzF0,10972
|
606
|
-
scout/server/blueprints/variant/views.py,sha256=
|
610
|
+
scout/server/blueprints/variant/views.py,sha256=lP6K0BD0d4TDxOMFiQ-UUxF4UkoALzX-nxo_aSY7muI,18969
|
607
611
|
scout/server/blueprints/variant/templates/variant/acmg.html,sha256=Fk4vL1Pu4G3wZsfiUO2jBlFLFoRgFAeqChlIyas5Bb4,8758
|
608
612
|
scout/server/blueprints/variant/templates/variant/buttons.html,sha256=4vlnvJKhr28qqzevlecAIvumvOgLZhGyPYQm68AnKzU,7608
|
609
|
-
scout/server/blueprints/variant/templates/variant/cancer-variant.html,sha256=
|
610
|
-
scout/server/blueprints/variant/templates/variant/
|
613
|
+
scout/server/blueprints/variant/templates/variant/cancer-variant.html,sha256=ZUnZYURdlLfiJ1Ryok5oRVa96bvBErhIgym2VlWlryQ,14001
|
614
|
+
scout/server/blueprints/variant/templates/variant/ccv.html,sha256=X33qKY1EvzoLldko1hK5tgE__xxNU54vq6fRzFew6Vc,8671
|
615
|
+
scout/server/blueprints/variant/templates/variant/components.html,sha256=dmKxuSrJgvKRtRAzXMN9W2-uZwsLwzde0W4CHqnBb-Q,26185
|
611
616
|
scout/server/blueprints/variant/templates/variant/gene_disease_relations.html,sha256=1U77akxqbb4AS2GSyvFwGD6D7rP68L3KXKLUmP73664,7256
|
612
617
|
scout/server/blueprints/variant/templates/variant/rank_score_results.html,sha256=32RfBrpZ_J-1WYE01Bdd5IC9i1MAzXT7GF27OlElk94,2040
|
613
618
|
scout/server/blueprints/variant/templates/variant/sanger.html,sha256=0kVnscTw3KUwjR4QOEuNJMOK9eADGEn9qGNtGx2ST7Y,4507
|
614
619
|
scout/server/blueprints/variant/templates/variant/str-variant-reviewer.html,sha256=p0nWqo71GJ8ACLEzXuZbJAzDXoCHZLvH6f7yLi3JslI,2208
|
615
|
-
scout/server/blueprints/variant/templates/variant/sv-variant.html,sha256=
|
616
|
-
scout/server/blueprints/variant/templates/variant/tx_overview.html,sha256=
|
620
|
+
scout/server/blueprints/variant/templates/variant/sv-variant.html,sha256=4FBomOYYEDQWOl6jvW4Ffd6PQhqmPPKDA23wzMlZ6zI,16778
|
621
|
+
scout/server/blueprints/variant/templates/variant/tx_overview.html,sha256=EXLBDh_SgNVEO7MPMjlmfO6MDhtDcj0JyvZdRgxbwSM,6756
|
617
622
|
scout/server/blueprints/variant/templates/variant/utils.html,sha256=lF-w3400plEn0gVpHG-9k7N9L_p1U-PFGitcT_YlZw8,25414
|
618
|
-
scout/server/blueprints/variant/templates/variant/variant.html,sha256=
|
619
|
-
scout/server/blueprints/variant/templates/variant/variant_details.html,sha256=
|
623
|
+
scout/server/blueprints/variant/templates/variant/variant.html,sha256=JA0jI1ITvKamJY88U6-uBXYrHRZa3H2oyBUROtX9TKw,17874
|
624
|
+
scout/server/blueprints/variant/templates/variant/variant_details.html,sha256=KAdrLo8UTxO1Nr5ggfdn663E7xMq1rK0A2PrKXCJGjM,21049
|
620
625
|
scout/server/blueprints/variants/__init__.py,sha256=W1KCz9kEbVlNO0o3NvLitYLQoP_3JSJ5KSjhpcjlUBQ,55
|
621
|
-
scout/server/blueprints/variants/controllers.py,sha256=
|
622
|
-
scout/server/blueprints/variants/forms.py,sha256=
|
626
|
+
scout/server/blueprints/variants/controllers.py,sha256=ILJt2Jl9ShkePgZI1Grff-_gcxlZFzQ8zoQ86iZPxOI,74205
|
627
|
+
scout/server/blueprints/variants/forms.py,sha256=nxsZGHOr2M9GyQob8_8CK5qFgPgxZ3wBdFT69PkVVJc,11447
|
623
628
|
scout/server/blueprints/variants/utils.py,sha256=ifFBoyigx0A5KPE4iz9NSpyuUeF1bElrb4ohQLD2GlU,919
|
624
629
|
scout/server/blueprints/variants/views.py,sha256=skUGpZyRDzW4BEDIqWKajHBLF3qBUSP-UYSZYxbv3l8,28895
|
625
630
|
scout/server/blueprints/variants/static/form_scripts.js,sha256=o3GCboaesA9Sm1HgejS_yQwt0I-NTkvcl56jiBdLqZs,8319
|
626
|
-
scout/server/blueprints/variants/templates/variants/cancer-sv-variants.html,sha256=
|
627
|
-
scout/server/blueprints/variants/templates/variants/cancer-variants.html,sha256=
|
628
|
-
scout/server/blueprints/variants/templates/variants/components.html,sha256=
|
631
|
+
scout/server/blueprints/variants/templates/variants/cancer-sv-variants.html,sha256=QlGmUEdUQ7gCq7tMMUFAlGqqC9jFB78Q0h6tSp3QUas,7271
|
632
|
+
scout/server/blueprints/variants/templates/variants/cancer-variants.html,sha256=LnybOzNu4RkbighdIcV6okJwQWiO5ixOhTev_-QaQII,9611
|
633
|
+
scout/server/blueprints/variants/templates/variants/components.html,sha256=PGtcPGVbd3gcdG_6ozA66LDo3ZJ8VoehaDMUZjwyA5Q,17431
|
629
634
|
scout/server/blueprints/variants/templates/variants/fusion-variants.html,sha256=XGaLgWobzeFHwyQLXr_Yq9THssf8tGU91VbFKdGOFBg,4801
|
630
|
-
scout/server/blueprints/variants/templates/variants/indicators.html,sha256=
|
635
|
+
scout/server/blueprints/variants/templates/variants/indicators.html,sha256=5aSXytiWvaU87cqcR9GcB7U5jP8t-PVnor8FpKLl_k0,4847
|
631
636
|
scout/server/blueprints/variants/templates/variants/mei-variants.html,sha256=2Tb0vfzM--kJa5mVbT7L32h4E8nKYRSb245g6O5JIUU,5860
|
632
637
|
scout/server/blueprints/variants/templates/variants/str-variants.html,sha256=bjjeyoEO1aScqIDLtCh3xexZfvf1906yusPGJTyeNLU,10644
|
633
|
-
scout/server/blueprints/variants/templates/variants/sv-variants.html,sha256=
|
638
|
+
scout/server/blueprints/variants/templates/variants/sv-variants.html,sha256=fRDnB9wXago2OB2mthp0rD_Es4kxnj9YKRlOKCGVW3s,6407
|
634
639
|
scout/server/blueprints/variants/templates/variants/utils.html,sha256=MNDc2JwumU9ukISizSAraxIY06rHXR2Ze32RNnDEBI4,50042
|
635
640
|
scout/server/blueprints/variants/templates/variants/variants.html,sha256=KnCcsA1VaRdsbRCCw9Rg0TJTUvq03X9S24QgCqVToUk,9328
|
636
641
|
scout/server/extensions/__init__.py,sha256=s6qkGSFNRi_tP7yoeoXB5UarvLHidaK1Yw2Pae7Py90,1366
|
@@ -648,7 +653,7 @@ scout/server/extensions/panelapp_extension.py,sha256=UnHhyG7iSMy3ERQg5Sl3DOkmKjs
|
|
648
653
|
scout/server/extensions/phenopacket_extension.py,sha256=kcEUIOSfkQAlAmUm07hQS1BeUjeN4lBc-InvaNtbFxo,7295
|
649
654
|
scout/server/extensions/rerunner_extension.py,sha256=SEwQi5BZR5X70BoD0U7TfyGgGv2WbJbas0v1efuv_r8,1104
|
650
655
|
scout/server/static/bs_styles.css,sha256=Y7aq8Es3NHj1OaLPX0eiY5485C8gENptpuYmf7W3o1w,6421
|
651
|
-
scout/server/static/custom_images.js,sha256=
|
656
|
+
scout/server/static/custom_images.js,sha256=7GLudzi3518kWkHuSJGbiqkiU1WV3HofXI46RiBRFBk,1427
|
652
657
|
scout/server/static/favicon.ico,sha256=8aC2QonalUW-D62draMeiII4sZYQSp9BLGQnj-wRlt0,1469
|
653
658
|
scout/server/static/humans.txt,sha256=UdqAR07_5LAWWfgH2Ty4RR8BhoHS1WXpx9euKtXqqhs,259
|
654
659
|
scout/server/static/robots.txt,sha256=fFX0beQN4x3mzR3evnZjrOUYOTNkezYAwqMowTUpmxM,106
|
@@ -661,8 +666,9 @@ scout/server/translations/sv/LC_MESSAGES/messages.po,sha256=Wp7Mx4LoiFNtzsV1tpAo
|
|
661
666
|
scout/update/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
|
662
667
|
scout/update/panel.py,sha256=4z-vQ7GVIJXtlIub9pubFcQ-I9mLX5fRXKNPBdpuhJw,1649
|
663
668
|
scout/utils/__init__.py,sha256=DHCMH05dxkyD7m9QSs0WXsQQPgVRFQ9XvyNeNpHjjvg,74
|
664
|
-
scout/utils/acmg.py,sha256=
|
669
|
+
scout/utils/acmg.py,sha256=IkWWmHxc0YvoSurzXimKkH_Vf8C0bncywVUVu8m-YlY,11539
|
665
670
|
scout/utils/algorithms.py,sha256=w--NauXbQohZis7obr39a8bS57C4NRelYXn79V7m1dU,800
|
671
|
+
scout/utils/ccv.py,sha256=WhVyIzNW0ttfT4ZegOPGFR1xqqjRFNgnJSY7DPfXGNQ,5605
|
666
672
|
scout/utils/convert.py,sha256=asrsis3zkt9jXzseRmCqSa4_t1UT73HPPQRW-DKDdqE,1794
|
667
673
|
scout/utils/coordinates.py,sha256=n8WUFn9zohXfjxgFGryyg6mzdl0zBG8uVCdyjhizSpM,609
|
668
674
|
scout/utils/date.py,sha256=GUALqEIgWtbopqC9wJnVKmVm5FRq111iz4RfojUIfG0,1334
|
@@ -672,14 +678,13 @@ scout/utils/ensembl_rest_clients.py,sha256=of6CXQHBnwH4ji5URAZcEqVTebxduLs13lBWv
|
|
672
678
|
scout/utils/gene.py,sha256=uzIGrPBfOkhRGGR9iTSYa00w6PWijjpzSAWRo54wixM,1430
|
673
679
|
scout/utils/handle.py,sha256=tLjinHNLADa3IJSxMp_HJe9cbiMlPTsfky4hujplPqU,327
|
674
680
|
scout/utils/hgvs.py,sha256=P5i3fIK8WZZlUnjZ8XpMDUG5KDXRCDSOs55DfK5acsc,898
|
675
|
-
scout/utils/link.py,sha256=
|
681
|
+
scout/utils/link.py,sha256=HpQvwu0hmuCrs7TcAExLmOzEGr3glWuu8iaW0ao5pEA,9011
|
676
682
|
scout/utils/md5.py,sha256=KkgdxOf7xbF9AF40ZjQKCgWaxFWJ9tp9RKjd8SU6IoA,649
|
677
683
|
scout/utils/scout_requests.py,sha256=lgPumNI_EikBZR1m9ztZI_mZAfV29y1KGoiBv9kejzQ,12797
|
678
684
|
scout/utils/sort.py,sha256=1AcbeZ6vdt_UXM3BLDBa3aQmN4qxrqtskxwD19oBhvw,756
|
679
685
|
scout/utils/track_resources.py,sha256=eUjSEe-Ff8BIb4BHPC_COkJocQO2PaWueiPz1GAuiwY,2614
|
680
|
-
scout_browser-4.
|
681
|
-
scout_browser-4.
|
682
|
-
scout_browser-4.
|
683
|
-
scout_browser-4.
|
684
|
-
scout_browser-4.
|
685
|
-
scout_browser-4.92.dist-info/RECORD,,
|
686
|
+
scout_browser-4.95.0.dist-info/METADATA,sha256=IbeBpNPEf-Th3spPxj1Jjt1KXYuLBgWig8t7CWb6-dY,15642
|
687
|
+
scout_browser-4.95.0.dist-info/WHEEL,sha256=qtCwoSJWgHk21S1Kb4ihdzI2rlJ1ZKaIurTj_ngOhyQ,87
|
688
|
+
scout_browser-4.95.0.dist-info/entry_points.txt,sha256=q_mxFwbMFTwXRDDIRVcqKram2ubMVmvs3CSNvZri1nY,45
|
689
|
+
scout_browser-4.95.0.dist-info/licenses/LICENSE,sha256=TM1Y9Cqbwk55JVfxD-_bpGLtZQAeN9RovQlqHK6eOTY,1485
|
690
|
+
scout_browser-4.95.0.dist-info/RECORD,,
|
scout/__version__.py
DELETED
@@ -1 +0,0 @@
|
|
1
|
-
__version__ = "4.92"
|
Binary file
|
@@ -1 +0,0 @@
|
|
1
|
-
scout
|
File without changes
|
File without changes
|