scout-browser 4.91__py3-none-any.whl → 4.91.1__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (10) hide show
  1. scout/__version__.py +1 -1
  2. scout/server/blueprints/alignviewers/templates/alignviewers/utils.html +1 -1
  3. scout/server/blueprints/variants/templates/variants/cancer-sv-variants.html +4 -4
  4. scout/server/blueprints/variants/templates/variants/sv-variants.html +3 -7
  5. {scout_browser-4.91.dist-info → scout_browser-4.91.1.dist-info}/METADATA +1 -1
  6. {scout_browser-4.91.dist-info → scout_browser-4.91.1.dist-info}/RECORD +10 -10
  7. {scout_browser-4.91.dist-info → scout_browser-4.91.1.dist-info}/LICENSE +0 -0
  8. {scout_browser-4.91.dist-info → scout_browser-4.91.1.dist-info}/WHEEL +0 -0
  9. {scout_browser-4.91.dist-info → scout_browser-4.91.1.dist-info}/entry_points.txt +0 -0
  10. {scout_browser-4.91.dist-info → scout_browser-4.91.1.dist-info}/top_level.txt +0 -0
scout/__version__.py CHANGED
@@ -1 +1 @@
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- __version__ = "4.91"
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+ __version__ = "4.91.1"
scout/server/blueprints/alignviewers/templates/alignviewers/utils.html CHANGED
@@ -1,5 +1,5 @@
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  {% macro igv_script() %}
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  <link rel="shortcut icon" href="//igv.org/web/img/favicon.ico">
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  <!-- IGV JS-->
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- <script src="https://cdn.jsdelivr.net/npm/igv@3.0.9/dist/igv.min.js" integrity="sha512-vcMdgqBb5jsj6fAIlBMkDe3riA5meRJARkXtDFAl+5/jm5TxL6agAFq8Ek8LzrHtLncs40Qa8s98awdkINjy+Q==" crossorigin="anonymous"></script>
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+ <script src="https://cdn.jsdelivr.net/npm/igv@3.1.0/dist/igv.min.js" integrity="sha512-GqDTDFFltqWxc3IeSMcVcPNenhJE/OZnaMk7hkTk/shtC5bejPWstJF5AY8TsVpJWfK2HOzXYKUk95fS51Warw==" crossorigin="anonymous"></script>
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  {% endmacro %}
scout/server/blueprints/variants/templates/variants/cancer-sv-variants.html CHANGED
@@ -58,8 +58,8 @@
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  <tr>
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  <th style="width:2%"></th>
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  <th style="width:3%">Index</th>
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- <th>Type</th>
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  <th style="width:9%">Callers</th>
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+ <th>Type</th>
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  <th style="width:5%">Chr</th>
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  <th>Start</th>
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  <th>End</th>
@@ -77,7 +77,7 @@
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  {{ variant_row(variant) }}
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  {% else %}
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  <tr>
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- <td colspan="13">No matching variants</td>
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+ <td colspan="14">No matching variants</td>
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  </tr>
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  {% endfor %}
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  </tbody>
@@ -105,10 +105,10 @@
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  {{ cell_rank(variant, institute, case, form, manual_rank_options) }}
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  </td>
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  <td>
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- {{ variant.sub_category|upper }}
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+ {{ callers_cell(variant) }}
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  </td>
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  <td>
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- {{ callers_cell(variant) }}
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+ {{ variant.sub_category|upper }}
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  </td>
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  <td>{{ variant.chromosome if variant.chromosome == variant.end_chrom else variant.chromosome+'-'+variant.end_chrom }}</td>
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  <td class="col-2"><span style="white-space: nowrap;">{{ variant.position|human_longint|safe }}</span></td>
scout/server/blueprints/variants/templates/variants/sv-variants.html CHANGED
@@ -59,8 +59,8 @@ onsubmit="return validateForm()">
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  <th style="width:3%"></th>
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  <th>Rank</th>
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  <th>Score</th>
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- <th>Type</th>
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  <th>Callers</th>
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+ <th>Type</th>
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  <th>Chr</th>
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  <th>Start</th>
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  <th>End</th>
@@ -76,7 +76,7 @@ onsubmit="return validateForm()">
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  {{ variant_row(variant, inherit_palette) }}
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  {% else %}
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  <tr>
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- <td colspan="11">No matching variants</td>
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+ <td colspan="13">No matching variants</td>
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  </tr>
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  {% endfor %}
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  </tbody>
@@ -103,14 +103,10 @@ onsubmit="return validateForm()">
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  {{ cell_rank(variant, institute, case, form, manual_rank_options) }}
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  </td>
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  <td class="text-end">{{ variant.rank_score|int }}</td>
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- <td>
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- {{ variant.sub_category|upper }}
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- </td>
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  <td>
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  {{ callers_cell(variant) }}
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  </td>
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- <td><span data-bs-toggle="tooltip" data-bs-html="true" title="{% for name, caller in variant.callers %}{{ name }}: {{ caller }}<br>{% endfor %}">
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- {{ variant.sub_category|upper }}</span></td>
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+ <td>{{ variant.sub_category|upper }}</td>
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  <td>{{ variant.chromosome if variant.chromosome == variant.end_chrom else variant.chromosome+'-'+variant.end_chrom }}</td>
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  <td><span style="white-space: nowrap;">{{ variant.position|human_longint|safe }}</span></td>
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  <td><span style="white-space: nowrap;">{{ 'inf' if variant.end == 100000000000 else variant.end|human_longint|safe }}</span></td>
{scout_browser-4.91.dist-info → scout_browser-4.91.1.dist-info}/METADATA RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: scout-browser
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- Version: 4.91
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+ Version: 4.91.1
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  Summary: Clinical DNA variant visualizer and browser.
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  Home-page: https://github.com/Clinical-Genomics/scout
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  Author: Måns Magnusson
{scout_browser-4.91.dist-info → scout_browser-4.91.1.dist-info}/RECORD RENAMED
@@ -1,5 +1,5 @@
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  scout/__init__.py,sha256=Z4liXvmEcLkC67ElsWvYHfemPKdWgWI5O6MB6XlDM8M,232
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- scout/__version__.py,sha256=7iYANz6x54GsuXMxM9O1FhcxeKaYUGIOtQ7KWMWzlOc,21
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+ scout/__version__.py,sha256=UEW2jG2n4LaWe4lbBdEuuVDJFg2ITmLfH-vIghRM4ms,23
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  scout/adapter/__init__.py,sha256=-iX_hx2NI1EMAqX0pMd5_90Nnd9uvIMxv9EbefYBzsc,86
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  scout/adapter/client.py,sha256=IuajRsEwTG41ZP14X09Q1Cj94zIgmIvUtlXfcAFn0EA,1513
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  scout/adapter/mongo/__init__.py,sha256=NdHYCUXWUAuX5cUS3-6HCws2hW9uoGep8i0SC-oJd3k,31
@@ -452,7 +452,7 @@ scout/server/blueprints/alignviewers/partial.py,sha256=9hpI00yhvZZCcPVUHlVDp488r
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  scout/server/blueprints/alignviewers/views.py,sha256=Qa9VOPbqh2MC-L_x1Yp6n8hfr6mIm9EPIUdN_0itJRU,5092
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  scout/server/blueprints/alignviewers/templates/alignviewers/igv_sashimi_viewer.html,sha256=37ArJCraTajqWlCvyQYVfSvWCg94pRDIMvf2Y7Oe_j4,5545
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  scout/server/blueprints/alignviewers/templates/alignviewers/igv_viewer.html,sha256=u7_OUfcGt-S6BFhwleE4mNprshO870CnzhgLpe4tocg,8564
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- scout/server/blueprints/alignviewers/templates/alignviewers/utils.html,sha256=42-nInL7rRVAmXwq6mdbF8Kz-91O3Ni8OWmU4qdGmfY,336
455
+ scout/server/blueprints/alignviewers/templates/alignviewers/utils.html,sha256=x2B0vs8ZFmzF5QlI4a4EaLyRXkNRNlfcc75Q52uLu6k,336
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  scout/server/blueprints/api/__init__.py,sha256=HR6HjS7ot1K_8Lt5eQdNT154z_FCdHGSigy8r2LpNCI,26
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  scout/server/blueprints/api/views.py,sha256=pbl78wfhrm1T8JmiJDYF3BbTbfFrlF-hQRbuv2GWI0s,3729
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  scout/server/blueprints/cases/__init__.py,sha256=_c17kPFITFYcIVphF4V9bf0PZBer8bU3rtVWQnljKDU,52
@@ -623,14 +623,14 @@ scout/server/blueprints/variants/forms.py,sha256=w4Woeek6gpZfPM_9e1E_n-gpVvNxXPU
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  scout/server/blueprints/variants/utils.py,sha256=ifFBoyigx0A5KPE4iz9NSpyuUeF1bElrb4ohQLD2GlU,919
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  scout/server/blueprints/variants/views.py,sha256=skUGpZyRDzW4BEDIqWKajHBLF3qBUSP-UYSZYxbv3l8,28895
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  scout/server/blueprints/variants/static/form_scripts.js,sha256=o3GCboaesA9Sm1HgejS_yQwt0I-NTkvcl56jiBdLqZs,8319
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- scout/server/blueprints/variants/templates/variants/cancer-sv-variants.html,sha256=LT1GweXgM1PPAVMtkCR57KR_XF8v8YyiYEVrfBbZFQw,7389
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+ scout/server/blueprints/variants/templates/variants/cancer-sv-variants.html,sha256=rLASILYRFwTIA3S0WtfN3QS7JbL_VvXKYJOoa-1yQJQ,7389
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  scout/server/blueprints/variants/templates/variants/cancer-variants.html,sha256=6t1ZKUm2f6l5NJKDQvo9RBc4DBZgkWBXiePoIFkm6OY,9789
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  scout/server/blueprints/variants/templates/variants/components.html,sha256=xXa0ndN42htflWDYsbKhMwIYdk8hBJ0znyinVfLCU2o,17815
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  scout/server/blueprints/variants/templates/variants/fusion-variants.html,sha256=XGaLgWobzeFHwyQLXr_Yq9THssf8tGU91VbFKdGOFBg,4801
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  scout/server/blueprints/variants/templates/variants/indicators.html,sha256=BX6Wg8OpsALCGGozR1eXT57D0Ixrf-OFXVg6G20Wjr0,4400
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  scout/server/blueprints/variants/templates/variants/mei-variants.html,sha256=2Tb0vfzM--kJa5mVbT7L32h4E8nKYRSb245g6O5JIUU,5860
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  scout/server/blueprints/variants/templates/variants/str-variants.html,sha256=bjjeyoEO1aScqIDLtCh3xexZfvf1906yusPGJTyeNLU,10644
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- scout/server/blueprints/variants/templates/variants/sv-variants.html,sha256=hLuR5mVLNZByLeAgOAl3lZFTiGgU0C9K5XkghLEuyhs,6366
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+ scout/server/blueprints/variants/templates/variants/sv-variants.html,sha256=V_3hTZXmI_VEcQ6DpxVrTYnM3cBDGWtPri8cDVIsR9A,6153
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  scout/server/blueprints/variants/templates/variants/utils.html,sha256=3jixwVolEzf7-mmV8e7AgDLoMrQlJfucKa877FF5SUg,50042
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  scout/server/blueprints/variants/templates/variants/variants.html,sha256=KnCcsA1VaRdsbRCCw9Rg0TJTUvq03X9S24QgCqVToUk,9328
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  scout/server/extensions/__init__.py,sha256=s6qkGSFNRi_tP7yoeoXB5UarvLHidaK1Yw2Pae7Py90,1366
@@ -677,9 +677,9 @@ scout/utils/md5.py,sha256=KkgdxOf7xbF9AF40ZjQKCgWaxFWJ9tp9RKjd8SU6IoA,649
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  scout/utils/scout_requests.py,sha256=lgPumNI_EikBZR1m9ztZI_mZAfV29y1KGoiBv9kejzQ,12797
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  scout/utils/sort.py,sha256=1AcbeZ6vdt_UXM3BLDBa3aQmN4qxrqtskxwD19oBhvw,756
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  scout/utils/track_resources.py,sha256=eUjSEe-Ff8BIb4BHPC_COkJocQO2PaWueiPz1GAuiwY,2614
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- scout_browser-4.91.dist-info/LICENSE,sha256=TM1Y9Cqbwk55JVfxD-_bpGLtZQAeN9RovQlqHK6eOTY,1485
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- scout_browser-4.91.dist-info/METADATA,sha256=FtSgwPmrMDnKTt6tmtNxvdfEHI0zOKY4ORdWm1OWhtk,14260
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- scout_browser-4.91.dist-info/WHEEL,sha256=bFJAMchF8aTQGUgMZzHJyDDMPTO3ToJ7x23SLJa1SVo,92
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- scout_browser-4.91.dist-info/entry_points.txt,sha256=q_mxFwbMFTwXRDDIRVcqKram2ubMVmvs3CSNvZri1nY,45
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- scout_browser-4.91.dist-info/top_level.txt,sha256=qM75h71bztMaLYsxn1up4c_n2rjc_ZnyaW6Q0K5uOXc,6
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- scout_browser-4.91.dist-info/RECORD,,
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+ scout_browser-4.91.1.dist-info/LICENSE,sha256=TM1Y9Cqbwk55JVfxD-_bpGLtZQAeN9RovQlqHK6eOTY,1485
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+ scout_browser-4.91.1.dist-info/METADATA,sha256=b8Nefs04nnQtwP5Auh5mCb4ZMX909osa6b7rnp9iEkU,14262
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+ scout_browser-4.91.1.dist-info/WHEEL,sha256=bFJAMchF8aTQGUgMZzHJyDDMPTO3ToJ7x23SLJa1SVo,92
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+ scout_browser-4.91.1.dist-info/entry_points.txt,sha256=q_mxFwbMFTwXRDDIRVcqKram2ubMVmvs3CSNvZri1nY,45
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+ scout_browser-4.91.1.dist-info/top_level.txt,sha256=qM75h71bztMaLYsxn1up4c_n2rjc_ZnyaW6Q0K5uOXc,6
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+ scout_browser-4.91.1.dist-info/RECORD,,