scout-browser 4.91.2__py3-none-any.whl → 4.93.1__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- scout/__version__.py +1 -1
- scout/adapter/mongo/base.py +3 -0
- scout/adapter/mongo/case.py +27 -2
- scout/adapter/mongo/ccv.py +131 -0
- scout/adapter/mongo/query.py +13 -16
- scout/adapter/mongo/variant.py +4 -3
- scout/adapter/mongo/variant_events.py +45 -1
- scout/build/ccv.py +59 -0
- scout/commands/delete/delete_command.py +27 -4
- scout/commands/serve.py +2 -1
- scout/constants/__init__.py +2 -0
- scout/constants/case_tags.py +2 -0
- scout/constants/ccv.py +244 -0
- scout/demo/643594.config.yaml +2 -2
- scout/demo/images/custom_images/1300x1000.jpg +0 -0
- scout/models/ccv_evaluation.py +26 -0
- scout/models/variant/variant.py +1 -0
- scout/parse/panelapp.py +3 -1
- scout/server/blueprints/cases/templates/cases/case_report.html +45 -0
- scout/server/blueprints/cases/templates/cases/collapsible_actionbar.html +2 -2
- scout/server/blueprints/cases/templates/cases/index.html +0 -2
- scout/server/blueprints/genes/templates/genes/gene.html +6 -0
- scout/server/blueprints/institutes/templates/overview/causatives.html +1 -1
- scout/server/blueprints/institutes/templates/overview/utils.html +12 -1
- scout/server/blueprints/institutes/templates/overview/verified.html +1 -1
- scout/server/blueprints/institutes/views.py +4 -0
- scout/server/blueprints/panels/controllers.py +5 -6
- scout/server/blueprints/panels/templates/panels/panel.html +5 -5
- scout/server/blueprints/variant/controllers.py +148 -1
- scout/server/blueprints/variant/templates/variant/cancer-variant.html +1 -1
- scout/server/blueprints/variant/templates/variant/ccv.html +183 -0
- scout/server/blueprints/variant/templates/variant/components.html +61 -3
- scout/server/blueprints/variant/templates/variant/variant.html +1 -1
- scout/server/blueprints/variant/templates/variant/variant_details.html +29 -11
- scout/server/blueprints/variant/utils.py +21 -1
- scout/server/blueprints/variant/views.py +114 -3
- scout/server/blueprints/variants/controllers.py +31 -0
- scout/server/blueprints/variants/templates/variants/cancer-variants.html +2 -1
- scout/server/blueprints/variants/templates/variants/components.html +63 -73
- scout/server/blueprints/variants/templates/variants/indicators.html +11 -0
- scout/server/extensions/panelapp_extension.py +2 -2
- scout/server/static/custom_images.js +19 -2
- scout/utils/ccv.py +201 -0
- {scout_browser-4.91.2.dist-info → scout_browser-4.93.1.dist-info}/METADATA +6 -5
- {scout_browser-4.91.2.dist-info → scout_browser-4.93.1.dist-info}/RECORD +49 -43
- {scout_browser-4.91.2.dist-info → scout_browser-4.93.1.dist-info}/WHEEL +1 -1
- scout/demo/images/custom_images/640x480_two.jpg +0 -0
- {scout_browser-4.91.2.dist-info → scout_browser-4.93.1.dist-info}/LICENSE +0 -0
- {scout_browser-4.91.2.dist-info → scout_browser-4.93.1.dist-info}/entry_points.txt +0 -0
- {scout_browser-4.91.2.dist-info → scout_browser-4.93.1.dist-info}/top_level.txt +0 -0
@@ -1,6 +1,6 @@
|
|
1
1
|
Metadata-Version: 2.1
|
2
2
|
Name: scout-browser
|
3
|
-
Version: 4.
|
3
|
+
Version: 4.93.1
|
4
4
|
Summary: Clinical DNA variant visualizer and browser.
|
5
5
|
Home-page: https://github.com/Clinical-Genomics/scout
|
6
6
|
Author: Måns Magnusson
|
@@ -25,7 +25,7 @@ Requires-Dist: WTForms
|
|
25
25
|
Requires-Dist: Flask-WTF
|
26
26
|
Requires-Dist: Flask-Mail
|
27
27
|
Requires-Dist: coloredlogs
|
28
|
-
Requires-Dist:
|
28
|
+
Requires-Dist: query_phenomizer
|
29
29
|
Requires-Dist: Flask-Babel>=3
|
30
30
|
Requires-Dist: livereload>=2.7
|
31
31
|
Requires-Dist: tornado>=6.4.1
|
@@ -40,17 +40,18 @@ Requires-Dist: cryptography
|
|
40
40
|
Requires-Dist: defusedxml
|
41
41
|
Requires-Dist: svglib
|
42
42
|
Requires-Dist: cairosvg
|
43
|
-
Requires-Dist:
|
43
|
+
Requires-Dist: importlib_resources
|
44
44
|
Requires-Dist: authlib
|
45
|
-
Requires-Dist:
|
45
|
+
Requires-Dist: flask_login
|
46
46
|
Requires-Dist: flask-ldapconn
|
47
47
|
Requires-Dist: cyvcf2
|
48
48
|
Requires-Dist: configobj
|
49
|
-
Requires-Dist:
|
49
|
+
Requires-Dist: ped_parser
|
50
50
|
Requires-Dist: pydantic>=2
|
51
51
|
Requires-Dist: PyYaml>=5.1
|
52
52
|
Requires-Dist: intervaltree==3.0.2
|
53
53
|
Requires-Dist: anytree
|
54
|
+
Requires-Dist: python-dateutil
|
54
55
|
Requires-Dist: tabulate
|
55
56
|
Provides-Extra: coverage
|
56
57
|
Requires-Dist: chanjo-report; extra == "coverage"
|
@@ -1,13 +1,14 @@
|
|
1
1
|
scout/__init__.py,sha256=Z4liXvmEcLkC67ElsWvYHfemPKdWgWI5O6MB6XlDM8M,232
|
2
|
-
scout/__version__.py,sha256=
|
2
|
+
scout/__version__.py,sha256=QvBUfmeaghMXRYxQv7CLutqQ8EWHp4OXnrEJdYtEKgU,23
|
3
3
|
scout/adapter/__init__.py,sha256=-iX_hx2NI1EMAqX0pMd5_90Nnd9uvIMxv9EbefYBzsc,86
|
4
4
|
scout/adapter/client.py,sha256=IuajRsEwTG41ZP14X09Q1Cj94zIgmIvUtlXfcAFn0EA,1513
|
5
5
|
scout/adapter/mongo/__init__.py,sha256=NdHYCUXWUAuX5cUS3-6HCws2hW9uoGep8i0SC-oJd3k,31
|
6
6
|
scout/adapter/mongo/acmg.py,sha256=v2Zuw-6APVmcnBnNXa18WJEu2vj5GUhZNiKMkruJsBI,4170
|
7
|
-
scout/adapter/mongo/base.py,sha256=
|
8
|
-
scout/adapter/mongo/case.py,sha256=
|
7
|
+
scout/adapter/mongo/base.py,sha256=iIa2AjGNztKHcZzolY0T6r7Oh0guj6R1putztp4OTNY,4427
|
8
|
+
scout/adapter/mongo/case.py,sha256=aHHCOeB1wjEX98HKBpDFWC0zZ149Orn93XkW0m7Wj7A,65148
|
9
9
|
scout/adapter/mongo/case_events.py,sha256=slHR4XJF9vRuEbuInJKMMAImLF8m7tHWVfGP42fbXr0,26859
|
10
10
|
scout/adapter/mongo/case_group.py,sha256=tG8DuO0rNYepV4k0yCGPqssODErc0HMsAypg3mfhcV0,1575
|
11
|
+
scout/adapter/mongo/ccv.py,sha256=VIz-Yqzm-1UVPDKvZkBllO4BOKXzvKCXcQUjTtZCHTI,4165
|
11
12
|
scout/adapter/mongo/clinvar.py,sha256=tczC39O3DFDkYgjt2RDgkkG-x1Mvx_99Hw7dAbIQ5gk,19838
|
12
13
|
scout/adapter/mongo/cytoband.py,sha256=2NoIAoQ7RPqcipiSymD2O9qH8lXscP3T5ejquOrD7uQ,2622
|
13
14
|
scout/adapter/mongo/disease_terms.py,sha256=4qcQRLuP5xn_RkB2RlNtwCrONmDuWwdlngZrj87BUEo,5637
|
@@ -22,16 +23,17 @@ scout/adapter/mongo/matchmaker.py,sha256=amTvFOlUbrt1RmecY_8hPY6bO3j79lc2UbmzlCQ
|
|
22
23
|
scout/adapter/mongo/omics_variant.py,sha256=VdkNG_l6vcr3UF25EixEfvIdMGkSGeNaMjLRhQHS_lc,7521
|
23
24
|
scout/adapter/mongo/panel.py,sha256=d1oMEYAiDGybLmlbbf3-fQdCdU0-T7x2XdIUwZGthYk,20031
|
24
25
|
scout/adapter/mongo/phenomodel.py,sha256=cypSS8YRzu98Bf1kC0orfrLNn_ZQSYCK8e4mNR5PaPY,2572
|
25
|
-
scout/adapter/mongo/query.py,sha256=
|
26
|
+
scout/adapter/mongo/query.py,sha256=Zk5BV9GZYVlGoSRRjP88TpvB4teVpvHgHnSDV0W-kS0,33157
|
26
27
|
scout/adapter/mongo/rank_model.py,sha256=wvDNI4OLf-f7ZYZ_Q_6qi0myxOJCNNJR_-2-_0u2K2M,5712
|
27
28
|
scout/adapter/mongo/transcript.py,sha256=3U1qtyxZ1DnrzdBJm_emJXISMYFKJuX_zAKynUt8NMY,7417
|
28
29
|
scout/adapter/mongo/user.py,sha256=QoQnRWqi_dV3ZwGzBonEU6Ap9TgMDf2x_C5UIqG0pa0,2569
|
29
|
-
scout/adapter/mongo/variant.py,sha256=
|
30
|
-
scout/adapter/mongo/variant_events.py,sha256=
|
30
|
+
scout/adapter/mongo/variant.py,sha256=4kGyJn6kitOQ68-zp5bkT6koUP7WbZ3SLl2NXll6dOE,34928
|
31
|
+
scout/adapter/mongo/variant_events.py,sha256=yNnMM58P1LbYFw73rWzti6l2zWa_G93ozUTbVkcz4_I,33475
|
31
32
|
scout/adapter/mongo/variant_loader.py,sha256=C05StRMFVChopcolPYXFIbh_S-FhYHu4NvBCpiBLOeE,28327
|
32
33
|
scout/build/__init__.py,sha256=GUWEaXTpwsJil_KtrXBQJpZIwCQFSgo8NlK49R9IkA8,521
|
33
34
|
scout/build/acmg.py,sha256=M21MrrP_dtEyOuu6t-jBDdaqYcHPMLcwJlt9fHG2ycE,1523
|
34
35
|
scout/build/case.py,sha256=7Hry6ja0KvVhNQ1ecXy3HuaR7dY2x9O8f8FpYt4P6jo,11404
|
36
|
+
scout/build/ccv.py,sha256=cfAWSQ5cSBWURkL9_fPm1Y5aRcTIDOE9ieSWaYLufB4,1660
|
35
37
|
scout/build/disease.py,sha256=Zew9AF_z1NbbKcO3uJZ2wgni501SkfnYRgnaCZ4m8FY,2020
|
36
38
|
scout/build/hpo.py,sha256=LJBCTq-x09D0CSKcUHB8a6ynuUrVh_7Ia0ooA1BxMys,1207
|
37
39
|
scout/build/individual.py,sha256=a2L1NJF11oGaOU9LilWN5gftSyIRfk7H231mF2Y67WU,5232
|
@@ -54,11 +56,11 @@ scout/commands/__init__.py,sha256=VrenBj1daCAnIsBZtvdbv1SuxmODT_TTY8YcxWItrXE,22
|
|
54
56
|
scout/commands/base.py,sha256=WmUko96zsPbC3cUIezy0CAOOGKBFU-BoW-BPAhLORCE,4610
|
55
57
|
scout/commands/convert.py,sha256=T5dkFjRKSTf7dBS9uKIW4wEmdL13vKzKTLRy4nvf6Vg,1090
|
56
58
|
scout/commands/index_command.py,sha256=QTBU7LT2YldDBXuWCVdTH5FlQgRB6BCdiYoFrPo08NU,1149
|
57
|
-
scout/commands/serve.py,sha256=
|
59
|
+
scout/commands/serve.py,sha256=OZRHJrvlIXz1NQ1NHB175TxTxgpblybIPIob0PIvDXk,1554
|
58
60
|
scout/commands/utils.py,sha256=T29f-1wTq3uoxqtv6QOqBdMBl7tLeEn8DYXnnv3gowI,306
|
59
61
|
scout/commands/wipe_database.py,sha256=TvCoXZCT-mvTqsZaFstV5u5FM8KAQstB3JxyGHYMLtg,1005
|
60
62
|
scout/commands/delete/__init__.py,sha256=6Z97FsWMqyKqF64Anl1zwljVNTfjJUCI7yylxIEnsUY,35
|
61
|
-
scout/commands/delete/delete_command.py,sha256=
|
63
|
+
scout/commands/delete/delete_command.py,sha256=_x897Du0nTsYmSG_5LAIm6Z9sjKcaCrtAR7cwuNwl4I,13285
|
62
64
|
scout/commands/download/__init__.py,sha256=mfDzxqKzJ0LgfPBN_fehkdX5BPy1FJ3rauA3ORLIjCM,39
|
63
65
|
scout/commands/download/download_command.py,sha256=m5CKefst3qhs4urfNu1A2TERisUb_5WPn-wn9bGCDr0,736
|
64
66
|
scout/commands/download/ensembl.py,sha256=CsTMjYihBtXyfofNIQ2riL9UBzydDbqoNZ7jJVQ15ak,2112
|
@@ -124,9 +126,10 @@ scout/commands/view/intervals.py,sha256=8Pofxy0DwL2Euh3SdnTLLWsU6DjLNOwIGdxeCS83
|
|
124
126
|
scout/commands/view/panels.py,sha256=a0fQcP9-SDPuRYV7aEgIGUCYaMN6V47h6finpcdoomU,1098
|
125
127
|
scout/commands/view/transcripts.py,sha256=59WyNNp7zHPJIz9QgzrkoeKaSXTtuLli0VuL8IidEmY,1277
|
126
128
|
scout/commands/view/users.py,sha256=MKlmhDYRM7Yf-Trmi1ijEuqsDIUn326bdFADyDs7XYg,832
|
127
|
-
scout/constants/__init__.py,sha256=
|
129
|
+
scout/constants/__init__.py,sha256=ke7uVYgqn6dqByEQdfLQ1H061yOvaNyt8E-WP84Dgr8,5854
|
128
130
|
scout/constants/acmg.py,sha256=hYPzoLUqpuTjGXfIN80Nb1njriesH9oAELu1scp-ByU,18083
|
129
|
-
scout/constants/case_tags.py,sha256=
|
131
|
+
scout/constants/case_tags.py,sha256=O-BwEzU36MSpN7qqd-aSvoi4-VDRY8rM5hQ7Jg7DMgs,9447
|
132
|
+
scout/constants/ccv.py,sha256=YP82qWCrjv3JB8d2LkUdBlBZolk0uF3nhNmkNgmebiI,9734
|
130
133
|
scout/constants/clinvar.py,sha256=nr7KhwMIO_7taNQokRJlpgZfenMlKsdPIMpdOx3TwKY,5594
|
131
134
|
scout/constants/clnsig.py,sha256=TSeZjUno2jEvQTenrltZ900ZFYIRNoul_Wm2qRjvpPA,1493
|
132
135
|
scout/constants/disease_parsing.py,sha256=M9_OgsN88oXwKH_XpxdDma0zuWPRoHFQjL19tzojBPo,686
|
@@ -155,7 +158,7 @@ scout/demo/643594.clinical.str.vcf.gz,sha256=ElvicUseKkN-DiZOQrFXstxy2jo9lhVMn58
|
|
155
158
|
scout/demo/643594.clinical.str.vcf.gz.tbi,sha256=pyWRI8-DlfGw08S66nYqLOthbaRaNMpAhUACm48iM5A,1695
|
156
159
|
scout/demo/643594.clinical.vcf.gz,sha256=KpGBJPNfqOEE0uOkdldAeFRxdmPMPIlksiypXRhtOoE,409450
|
157
160
|
scout/demo/643594.clinical.vcf.gz.tbi,sha256=Pr1XyC4gonboAlTasdT-a7w7T8bNQXjV_G5hVdC9dy8,7732
|
158
|
-
scout/demo/643594.config.yaml,sha256=
|
161
|
+
scout/demo/643594.config.yaml,sha256=9L0UkAc3Wh8QseQWl_GsGKPI-tXofLijLknxQV0c5xk,5518
|
159
162
|
scout/demo/643594.ped,sha256=P-k5eZY78ZRtajMDQ_rr7Xv5oFhBO-vDc7whg36Jnw4,154
|
160
163
|
scout/demo/643594.ped_check.csv,sha256=36HoP13haqQerTEHuJF4R2r6Vh2AQilS1NTr7X6aoZs,444
|
161
164
|
scout/demo/643594.peddy.ped,sha256=msfhM3u_5hK_zjHhMas5Ns_KREllRyHN3kdTIVl5J-c,421
|
@@ -324,9 +327,9 @@ scout/demo/images/chromograph_demo/upd_sites_9.png,sha256=tp9Iq4eSgsVrNCbqelwRpE
|
|
324
327
|
scout/demo/images/chromograph_demo/upd_sites_M.png,sha256=I7EOWQ_uvm2LA2ACf68KBTihwIjWp4-EB1CUAOqkmQ0,97
|
325
328
|
scout/demo/images/chromograph_demo/upd_sites_X.png,sha256=8cC5CGlkHeUmxL6f-wbRDjf78SV-bcKD5x4crSgDXP8,2110
|
326
329
|
scout/demo/images/chromograph_demo/upd_sites_Y.png,sha256=I7EOWQ_uvm2LA2ACf68KBTihwIjWp4-EB1CUAOqkmQ0,97
|
330
|
+
scout/demo/images/custom_images/1300x1000.jpg,sha256=j76cvbyBBmNEGwxjqeBO2SEv1XViy1OZCnLTXj8EhVM,36326
|
327
331
|
scout/demo/images/custom_images/640x480_one.png,sha256=Dkjhu5BUW8EN8LzJIKx9lhALRus5BdIgvSTthGuZ2Ck,2310
|
328
332
|
scout/demo/images/custom_images/640x480_three.svg,sha256=r67CMchC-E5kpGoqSNnIzTqrzmzM8-eS5OzHtskGSoo,445
|
329
|
-
scout/demo/images/custom_images/640x480_two.jpg,sha256=iKFAB2qfBA0D4L0JnYbyqUmPXRC8_YvofnuCCA0swcs,9076
|
330
333
|
scout/demo/images/custom_images/replicons/640x480_AR.svg,sha256=r67CMchC-E5kpGoqSNnIzTqrzmzM8-eS5OzHtskGSoo,445
|
331
334
|
scout/demo/images/custom_images/replicons/640x480_ATN1.svg,sha256=r67CMchC-E5kpGoqSNnIzTqrzmzM8-eS5OzHtskGSoo,445
|
332
335
|
scout/demo/mitodel_test_files/earlycasualcaiman_lanes_1_sorted_md_mitodel.txt,sha256=FQkn0H-tid7-IxOLgNb5ChhT2O6sGurnuE9_LPlgGEs,63
|
@@ -382,6 +385,7 @@ scout/log/handlers.py,sha256=HBwcJkiBZxkiJYwacBMIuxuKaodo6nfjQeQokiVEa8s,1378
|
|
382
385
|
scout/log/log.py,sha256=EPtd6Z1HMSvmuDHdElLUcLhPsz36LNQSX09Lg3m1jCY,1549
|
383
386
|
scout/models/__init__.py,sha256=xfMJsbQbGB1ZMa5zhS0S_R0udxZ4PX8h24NtnJ2gIt0,117
|
384
387
|
scout/models/acmg_evaluation.py,sha256=Rn8GvbcUjMS1ZjDaPxuxn2cwWuESxeHOadZn4SREyeo,676
|
388
|
+
scout/models/ccv_evaluation.py,sha256=nJlT2THRUbDQgwDuoorOiOkIof-zDa95PyPdubovQBk,691
|
385
389
|
scout/models/clinvar.py,sha256=fTmQYV3yRxQn1JBOwKnovYmkl19H14HKRE2zY9JA93U,3102
|
386
390
|
scout/models/disease_term.py,sha256=KFrIkoyImhVDf4YAMYyluQZvDE9GNEa533M_4IMeIlQ,803
|
387
391
|
scout/models/event.py,sha256=2v9K7hbSa6bgadolGnGL7OymSibNGRyTZXlnL_SrFTM,1863
|
@@ -399,7 +403,7 @@ scout/models/case/case_loading_models.py,sha256=GNeXZFrJ_1ISSxqO2VpKXazCLksLsPbT
|
|
399
403
|
scout/models/variant/__init__.py,sha256=H-IZ2hSTSVS28S8FZzA8j2Cyu1PHQFXyMWJFtCucPAk,40
|
400
404
|
scout/models/variant/gene.py,sha256=98CG_JcAklGGFIrUulf1_olQalV65kXQO-gOf7VQZ0A,1095
|
401
405
|
scout/models/variant/transcript.py,sha256=rfflEbTs7Bn4HDENqrxtGopQ_0HKnrVLLyBcrj4NpwM,1720
|
402
|
-
scout/models/variant/variant.py,sha256=
|
406
|
+
scout/models/variant/variant.py,sha256=SppFVdCYrlZiMBce38YrAykYZZ-0el3DzrArJHtC1yU,4473
|
403
407
|
scout/parse/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
|
404
408
|
scout/parse/case.py,sha256=-sGKWYWcskMagrDpEoeCIAJacwCR2feC8SwWvT0FJVw,11577
|
405
409
|
scout/parse/cytoband.py,sha256=7flY3b_wegupHHBLRcs4KyM1ns-uzuTfVHm4CycnupE,1055
|
@@ -414,7 +418,7 @@ scout/parse/mitodel.py,sha256=3uvEXI9v9wIw97NUL7gqLLxHay0mpQpDgKaIxUbIyrE,803
|
|
414
418
|
scout/parse/omim.py,sha256=nrCaFZgjUKZo9Jfku2-jcNjdsIYHsvjdWcydz4nCpZA,12465
|
415
419
|
scout/parse/orpha.py,sha256=5u9xqGpAn8vgoJ0uVqbYiqQBiNfBwXOiTzX16kAnmFU,4392
|
416
420
|
scout/parse/panel.py,sha256=J28e_MkKeB5r4hOutb3qimxUT7G5yg8x1Ca4bAs0I_c,9577
|
417
|
-
scout/parse/panelapp.py,sha256=
|
421
|
+
scout/parse/panelapp.py,sha256=Idz6cGvQnyI-nn6yCTc6EGSRp1gX-CXN6Y4ayAee-_A,4076
|
418
422
|
scout/parse/peddy.py,sha256=uM49GaZMtr8waCsZDvCHDS5JDQ43JUlhdWh9C7f7ZvU,5418
|
419
423
|
scout/parse/smn.py,sha256=iOK1N8iYm9dFigsKtWq0Y0ZCa1CH29s9zeR_tH0bPuc,1153
|
420
424
|
scout/parse/omics_variant/__init__.py,sha256=vq8Ew4_Xr2vPy_3Fg0eTpPWsQpWnUXYBhjRndBUvtTw,422
|
@@ -464,14 +468,14 @@ scout/server/blueprints/cases/static/edit_pedigree.js,sha256=ntC5fie7SsOYJau8qkk
|
|
464
468
|
scout/server/blueprints/cases/static/madeline.js,sha256=KHxKMBVlYVJODNu5QkY9hhsGkDJNoaCoCZZ0DRu0YN0,1175
|
465
469
|
scout/server/blueprints/cases/templates/cases/case.html,sha256=9Fcn-OFA1yIHchD0PjDs7-Y8I7Qqr8o6cavN0eOi5rI,37183
|
466
470
|
scout/server/blueprints/cases/templates/cases/case_bionano.html,sha256=PLoRv7hDJcHwxhi-0hC9fQSZc7V_aUYHBhhQqcn_2G8,5946
|
467
|
-
scout/server/blueprints/cases/templates/cases/case_report.html,sha256=
|
471
|
+
scout/server/blueprints/cases/templates/cases/case_report.html,sha256=ZhxBrEXq1jmjqeJPGgCRtN-dVo10d5SWK7GAIjbO80A,65341
|
468
472
|
scout/server/blueprints/cases/templates/cases/case_sma.html,sha256=99rmRyDXFXjooB52TI5_ebJKv1ZAJbVXEw4deHfSVMA,7285
|
469
473
|
scout/server/blueprints/cases/templates/cases/case_tabular_view.html,sha256=ko-LDUKmIoTazMZ2nFWvPEZsgObU07RwqIkDYFjokoY,4317
|
470
474
|
scout/server/blueprints/cases/templates/cases/chanjo2_form.html,sha256=5Wmk7DM8LI3MynqzxeTzAr_EoEBwVVo31djcI5ZlTdo,2164
|
471
|
-
scout/server/blueprints/cases/templates/cases/collapsible_actionbar.html,sha256=
|
475
|
+
scout/server/blueprints/cases/templates/cases/collapsible_actionbar.html,sha256=H45WZK2qVY47wgttdASjRooRKFs2wQXAnH18u80hRfg,30895
|
472
476
|
scout/server/blueprints/cases/templates/cases/diseases.html,sha256=ETTQI0Nrl_v86NoX9mFZcvWD-qM1IJoqPmHPWn__Grw,1677
|
473
477
|
scout/server/blueprints/cases/templates/cases/gene_panel.html,sha256=lkC_Piqaq-paYr4GUCwQaR8EgGOUXDMoW5sPLDW7yzg,11628
|
474
|
-
scout/server/blueprints/cases/templates/cases/index.html,sha256=
|
478
|
+
scout/server/blueprints/cases/templates/cases/index.html,sha256=y91d7yI64Fbz7wS8CSsi3vcCo6rFmS0mnstUipnVHUQ,1136
|
475
479
|
scout/server/blueprints/cases/templates/cases/individuals_table.html,sha256=wjcrPMYXZGRWxM0GzHwbLmsOPWtmke9p2T22ngCBMyU,11460
|
476
480
|
scout/server/blueprints/cases/templates/cases/institutes_sidebar.html,sha256=u0oPGHJ0ipZ1LkjHkbwlWfkUWc1h6XH1nh3tkbX17z0,4546
|
477
481
|
scout/server/blueprints/cases/templates/cases/matchmaker.html,sha256=kPYnmcZJ1gmx_guW52H7baT9Sw4WE0VJmLGF6N7Z3iA,13639
|
@@ -500,27 +504,27 @@ scout/server/blueprints/diagnoses/templates/diagnoses/disease_term.html,sha256=8
|
|
500
504
|
scout/server/blueprints/genes/__init__.py,sha256=LPHrbmfVhZpLGGdExFbJp_Du1NKCsVOO_eaevpsNLC8,52
|
501
505
|
scout/server/blueprints/genes/controllers.py,sha256=LCuGPQymKxA7sES49z_j2_B3prKmNY-ME0VK892VoPs,3629
|
502
506
|
scout/server/blueprints/genes/views.py,sha256=lFJ7izYu0CbUJo3j5TesrUhIwreZUYw9_dDqd6iG8m4,1512
|
503
|
-
scout/server/blueprints/genes/templates/genes/gene.html,sha256=
|
507
|
+
scout/server/blueprints/genes/templates/genes/gene.html,sha256=a--c-IjzNKN_JW7z9jbNCnk3bLD_oVeFvf5x8IAmynA,11197
|
504
508
|
scout/server/blueprints/genes/templates/genes/genes.html,sha256=x6jXKijvuEX9GvIedHW4O_BerYXiWEmAdYT0HTiGnhI,1130
|
505
509
|
scout/server/blueprints/genes/templates/genes/layout.html,sha256=cZMLe2cInq24z0sZpPxDm_kEiAe5VQbOR-8XWn6wlvI,1601
|
506
510
|
scout/server/blueprints/institutes/__init__.py,sha256=kGSyYrBC1QaEQBDdoMkMLfaowV7roaV5DowICi_0RSQ,65
|
507
511
|
scout/server/blueprints/institutes/controllers.py,sha256=Fv57oJ96VsOaYGtQb-0m96bb7ospNGRBPiVX9QsMJZw,31720
|
508
512
|
scout/server/blueprints/institutes/forms.py,sha256=gjVNdKt7hIrNk_JOwCDRuOXiOrE9kS41VZQuTkkmkk8,6615
|
509
|
-
scout/server/blueprints/institutes/views.py,sha256=
|
513
|
+
scout/server/blueprints/institutes/views.py,sha256=PSpf82kW0EKZc24CPhBhuE-wXXGyIz-R6IJu7IM0IrM,9052
|
510
514
|
scout/server/blueprints/institutes/static/form_scripts.js,sha256=8Sn7omeXeeUbiXJPfT0Qb4CaBJ_KtZZWw7N2he7EDx0,747
|
511
515
|
scout/server/blueprints/institutes/static/select2_darktheme.css,sha256=Nq_va597W_e5y-52B4ClwSJzACq0WFbPU8SIp3DtKIo,1818
|
512
516
|
scout/server/blueprints/institutes/static/timeline_styles.css,sha256=Vq48ffIidpQmDQhAzfW47O9mGQZEWdlbMtOE8AK-ZEU,2122
|
513
517
|
scout/server/blueprints/institutes/static/variants_list_scripts.js,sha256=gO_ZuJC2jj7Y9x6CEVEVhN1oIE4bIWrTY0_zVcsbRbY,236
|
514
518
|
scout/server/blueprints/institutes/templates/overview/cases.html,sha256=7-9nUomP6iaqXGtf6GemVECYMG2nD-h64RKTAmLkof0,12758
|
515
|
-
scout/server/blueprints/institutes/templates/overview/causatives.html,sha256=
|
519
|
+
scout/server/blueprints/institutes/templates/overview/causatives.html,sha256=192pgqUSXQF4qhC933qsYtTwvmlqDctxwHcArERkHc8,1619
|
516
520
|
scout/server/blueprints/institutes/templates/overview/filters.html,sha256=Dzu5YicmdjW_zGqbCUrb8TMbSUuRaG47itTMwwX7Bm8,3102
|
517
521
|
scout/server/blueprints/institutes/templates/overview/gene_variants.html,sha256=EyhBZEdMZQBaJWR_FDeabuWXRSd4Xcqh0teaxVyNvAE,8442
|
518
522
|
scout/server/blueprints/institutes/templates/overview/institute_settings.html,sha256=EqOek5bso0wKqeEnUPW1z2mIpwRl8kuFyDKHJZ0FJx4,5014
|
519
523
|
scout/server/blueprints/institutes/templates/overview/institute_sidebar.html,sha256=vQQunXH2Cr8-z2Kc7uTCzsSqIX14Xld44NWqdhpw-Hs,4304
|
520
524
|
scout/server/blueprints/institutes/templates/overview/timeline.html,sha256=upTv7v4sUwxGfJDSyk8F5zPb61dedG66zgfvh_SMR4M,2289
|
521
525
|
scout/server/blueprints/institutes/templates/overview/users.html,sha256=6dkbDBNLw2b97M2Pd8JImpPoT3FLTcl84oBN3inLJRg,1134
|
522
|
-
scout/server/blueprints/institutes/templates/overview/utils.html,sha256=
|
523
|
-
scout/server/blueprints/institutes/templates/overview/verified.html,sha256=
|
526
|
+
scout/server/blueprints/institutes/templates/overview/utils.html,sha256=Z66aFcrEXzgo0FyPc1tfFA_VYJdfG58QWLgJuXG2l1Y,33123
|
527
|
+
scout/server/blueprints/institutes/templates/overview/verified.html,sha256=qxZ8mIPX00ZXIy_5eLO2QmLrjJZrhw97kdXBZxpRj38,3363
|
524
528
|
scout/server/blueprints/login/__init__.py,sha256=uDzQjNNrMloZ4-i-1cEW7d59FZ--Xy89b-Xn5SvyC1U,52
|
525
529
|
scout/server/blueprints/login/controllers.py,sha256=bg0me00OvwYJiTm4dZnbl8eyRRRDquBMs5U7_YV4xWI,1883
|
526
530
|
scout/server/blueprints/login/models.py,sha256=w0ELh33rX1zwEnzZE-nhaoB6Z1JfgWxzWJ43JFJJo4s,688
|
@@ -544,11 +548,11 @@ scout/server/blueprints/omics_variants/controllers.py,sha256=AnM70stvLniJIU3pFUX
|
|
544
548
|
scout/server/blueprints/omics_variants/views.py,sha256=P-mo2S1RBGYxsNCFqSTNQNLvqiH9r6_AoZgsOWpopPE,3817
|
545
549
|
scout/server/blueprints/omics_variants/templates/omics_variants/outliers.html,sha256=gv9llZzH-AKJ4i2XJKZFJi9IBgvF84WI7QCVuvFOhTA,13703
|
546
550
|
scout/server/blueprints/panels/__init__.py,sha256=usxBF0O7zNX1d9jt-8DRoFZwcfHHS96Gv87LDr1AgG4,53
|
547
|
-
scout/server/blueprints/panels/controllers.py,sha256=
|
551
|
+
scout/server/blueprints/panels/controllers.py,sha256=_LXiayDyGcyRQ3Hw13fD8zVYFQ1jIIXUMQ49WsimrZ8,12618
|
548
552
|
scout/server/blueprints/panels/forms.py,sha256=DYlhYpnpv7ehf9JlY3HRFwy-TZ5QDHB0RIRaNTAW1jQ,696
|
549
553
|
scout/server/blueprints/panels/views.py,sha256=NN7jRPLK0mbdR0ERh7DgDHdqM4jAHeghG5O4P3II_ew,15772
|
550
554
|
scout/server/blueprints/panels/templates/panels/gene-edit.html,sha256=KqdUdu93707upLxh31Bwxgd1w4kH-WHtVilSNmAqiRo,3627
|
551
|
-
scout/server/blueprints/panels/templates/panels/panel.html,sha256=
|
555
|
+
scout/server/blueprints/panels/templates/panels/panel.html,sha256=MBIxXLQ71Hs5TxJEWLzhnX4Q8YMGqA5EECz-Agn3tyA,16656
|
552
556
|
scout/server/blueprints/panels/templates/panels/panel_pdf_case_hits.html,sha256=uzfZJiMNQiTa_6u4uMuIbK3VXIs-8Rw-MjKujFttZG8,3438
|
553
557
|
scout/server/blueprints/panels/templates/panels/panel_pdf_simple.html,sha256=cpOnQzeKYnQwXosTKk9hkiBigJJLS3Q_y2oHDR3C8io,2744
|
554
558
|
scout/server/blueprints/panels/templates/panels/panels.html,sha256=2IEZFbXzp4MKbx-9UZTW8rZt8pl3iZXPlkvppS3sj0Q,14106
|
@@ -600,14 +604,15 @@ scout/server/blueprints/public/static/ideograms/chromosome-X.png,sha256=Dj7npcW_
|
|
600
604
|
scout/server/blueprints/public/static/ideograms/chromosome-Y.png,sha256=KlOsBLZYFVHRvXvTioT-XE57zSWoYeIwIEXo_rzLBR0,1524
|
601
605
|
scout/server/blueprints/public/templates/public/index.html,sha256=-c6-r2G6-cdE9PLV126V8zTwYmApI88UIQKWuVP6HP4,4268
|
602
606
|
scout/server/blueprints/variant/__init__.py,sha256=SlD8-Aoj9Jq9aVTJjtFfsu-0sUVfkzpiEXcH8z9q6dI,54
|
603
|
-
scout/server/blueprints/variant/controllers.py,sha256=
|
604
|
-
scout/server/blueprints/variant/utils.py,sha256=
|
607
|
+
scout/server/blueprints/variant/controllers.py,sha256=dnx5YFVF62V2kAspfGpw0Mr0qUH1VoU1EBTP1hvIlZM,29691
|
608
|
+
scout/server/blueprints/variant/utils.py,sha256=BMezzz9Y9ZoGMaLKRbQopJUkWWUo1M9Xi-pw82Vdm4k,25079
|
605
609
|
scout/server/blueprints/variant/verification_controllers.py,sha256=eKzP222e7xuFOaQaI9MLOrD9RWtI8uGB1cJYbcXLzF0,10972
|
606
|
-
scout/server/blueprints/variant/views.py,sha256=
|
610
|
+
scout/server/blueprints/variant/views.py,sha256=Y-rjeY37tDFCKFPGDPVbqw4bq0_-zANosZC6nf9Ze7Q,18958
|
607
611
|
scout/server/blueprints/variant/templates/variant/acmg.html,sha256=Fk4vL1Pu4G3wZsfiUO2jBlFLFoRgFAeqChlIyas5Bb4,8758
|
608
612
|
scout/server/blueprints/variant/templates/variant/buttons.html,sha256=4vlnvJKhr28qqzevlecAIvumvOgLZhGyPYQm68AnKzU,7608
|
609
|
-
scout/server/blueprints/variant/templates/variant/cancer-variant.html,sha256=
|
610
|
-
scout/server/blueprints/variant/templates/variant/
|
613
|
+
scout/server/blueprints/variant/templates/variant/cancer-variant.html,sha256=ZUnZYURdlLfiJ1Ryok5oRVa96bvBErhIgym2VlWlryQ,14001
|
614
|
+
scout/server/blueprints/variant/templates/variant/ccv.html,sha256=X33qKY1EvzoLldko1hK5tgE__xxNU54vq6fRzFew6Vc,8671
|
615
|
+
scout/server/blueprints/variant/templates/variant/components.html,sha256=tiSaaa2Qdl14cdJv1kjpq0djL9PlvErtz_tnFxg9-Bw,24909
|
611
616
|
scout/server/blueprints/variant/templates/variant/gene_disease_relations.html,sha256=1U77akxqbb4AS2GSyvFwGD6D7rP68L3KXKLUmP73664,7256
|
612
617
|
scout/server/blueprints/variant/templates/variant/rank_score_results.html,sha256=32RfBrpZ_J-1WYE01Bdd5IC9i1MAzXT7GF27OlElk94,2040
|
613
618
|
scout/server/blueprints/variant/templates/variant/sanger.html,sha256=0kVnscTw3KUwjR4QOEuNJMOK9eADGEn9qGNtGx2ST7Y,4507
|
@@ -615,19 +620,19 @@ scout/server/blueprints/variant/templates/variant/str-variant-reviewer.html,sha2
|
|
615
620
|
scout/server/blueprints/variant/templates/variant/sv-variant.html,sha256=8199JLlkuNOLI88hSwgtPxKjk9SDyhNS-WJR1S7mnFs,16978
|
616
621
|
scout/server/blueprints/variant/templates/variant/tx_overview.html,sha256=turyCoOCCd_N80FakxXfIl7q_WViysz1fwx3j312_Lg,6737
|
617
622
|
scout/server/blueprints/variant/templates/variant/utils.html,sha256=lF-w3400plEn0gVpHG-9k7N9L_p1U-PFGitcT_YlZw8,25414
|
618
|
-
scout/server/blueprints/variant/templates/variant/variant.html,sha256=
|
619
|
-
scout/server/blueprints/variant/templates/variant/variant_details.html,sha256=
|
623
|
+
scout/server/blueprints/variant/templates/variant/variant.html,sha256=JA0jI1ITvKamJY88U6-uBXYrHRZa3H2oyBUROtX9TKw,17874
|
624
|
+
scout/server/blueprints/variant/templates/variant/variant_details.html,sha256=KAdrLo8UTxO1Nr5ggfdn663E7xMq1rK0A2PrKXCJGjM,21049
|
620
625
|
scout/server/blueprints/variants/__init__.py,sha256=W1KCz9kEbVlNO0o3NvLitYLQoP_3JSJ5KSjhpcjlUBQ,55
|
621
|
-
scout/server/blueprints/variants/controllers.py,sha256=
|
626
|
+
scout/server/blueprints/variants/controllers.py,sha256=ILJt2Jl9ShkePgZI1Grff-_gcxlZFzQ8zoQ86iZPxOI,74205
|
622
627
|
scout/server/blueprints/variants/forms.py,sha256=w4Woeek6gpZfPM_9e1E_n-gpVvNxXPU_ria7cvP1HSo,10750
|
623
628
|
scout/server/blueprints/variants/utils.py,sha256=ifFBoyigx0A5KPE4iz9NSpyuUeF1bElrb4ohQLD2GlU,919
|
624
629
|
scout/server/blueprints/variants/views.py,sha256=skUGpZyRDzW4BEDIqWKajHBLF3qBUSP-UYSZYxbv3l8,28895
|
625
630
|
scout/server/blueprints/variants/static/form_scripts.js,sha256=o3GCboaesA9Sm1HgejS_yQwt0I-NTkvcl56jiBdLqZs,8319
|
626
631
|
scout/server/blueprints/variants/templates/variants/cancer-sv-variants.html,sha256=rLASILYRFwTIA3S0WtfN3QS7JbL_VvXKYJOoa-1yQJQ,7389
|
627
|
-
scout/server/blueprints/variants/templates/variants/cancer-variants.html,sha256=
|
628
|
-
scout/server/blueprints/variants/templates/variants/components.html,sha256=
|
632
|
+
scout/server/blueprints/variants/templates/variants/cancer-variants.html,sha256=N2AM-uqgRTwHo5Ep0GNNzm_kqG0hTnYTdWU2Ox2Ocs4,9870
|
633
|
+
scout/server/blueprints/variants/templates/variants/components.html,sha256=b2LKVE5vkKy8bgHbScCnGyL9xQzMuQYeBpOl5h8IR_E,16820
|
629
634
|
scout/server/blueprints/variants/templates/variants/fusion-variants.html,sha256=XGaLgWobzeFHwyQLXr_Yq9THssf8tGU91VbFKdGOFBg,4801
|
630
|
-
scout/server/blueprints/variants/templates/variants/indicators.html,sha256=
|
635
|
+
scout/server/blueprints/variants/templates/variants/indicators.html,sha256=5aSXytiWvaU87cqcR9GcB7U5jP8t-PVnor8FpKLl_k0,4847
|
631
636
|
scout/server/blueprints/variants/templates/variants/mei-variants.html,sha256=2Tb0vfzM--kJa5mVbT7L32h4E8nKYRSb245g6O5JIUU,5860
|
632
637
|
scout/server/blueprints/variants/templates/variants/str-variants.html,sha256=bjjeyoEO1aScqIDLtCh3xexZfvf1906yusPGJTyeNLU,10644
|
633
638
|
scout/server/blueprints/variants/templates/variants/sv-variants.html,sha256=V_3hTZXmI_VEcQ6DpxVrTYnM3cBDGWtPri8cDVIsR9A,6153
|
@@ -644,11 +649,11 @@ scout/server/extensions/ldap_extension.py,sha256=nVgJ6YhSyvpg8J4bSYzJwoEvKhP0faW
|
|
644
649
|
scout/server/extensions/loqus_extension.py,sha256=uiqUXQ7Q7DCj6C20TKgL8yLu9DXov95vrJfhq0tvbTM,12602
|
645
650
|
scout/server/extensions/matchmaker_extension.py,sha256=mNytCYnZX1hgdq1otkvnyOkh4dj9SVgQthJAfKb8TMI,5024
|
646
651
|
scout/server/extensions/mongo_extension.py,sha256=bKB0K5ibp-BWynOTgzBJd5qIYO0S9zRtEyDUw7EoxSQ,1029
|
647
|
-
scout/server/extensions/panelapp_extension.py,sha256=
|
652
|
+
scout/server/extensions/panelapp_extension.py,sha256=UnHhyG7iSMy3ERQg5Sl3DOkmKjsLPgAEfPkzlfn2BrY,2738
|
648
653
|
scout/server/extensions/phenopacket_extension.py,sha256=kcEUIOSfkQAlAmUm07hQS1BeUjeN4lBc-InvaNtbFxo,7295
|
649
654
|
scout/server/extensions/rerunner_extension.py,sha256=SEwQi5BZR5X70BoD0U7TfyGgGv2WbJbas0v1efuv_r8,1104
|
650
655
|
scout/server/static/bs_styles.css,sha256=Y7aq8Es3NHj1OaLPX0eiY5485C8gENptpuYmf7W3o1w,6421
|
651
|
-
scout/server/static/custom_images.js,sha256=
|
656
|
+
scout/server/static/custom_images.js,sha256=7GLudzi3518kWkHuSJGbiqkiU1WV3HofXI46RiBRFBk,1427
|
652
657
|
scout/server/static/favicon.ico,sha256=8aC2QonalUW-D62draMeiII4sZYQSp9BLGQnj-wRlt0,1469
|
653
658
|
scout/server/static/humans.txt,sha256=UdqAR07_5LAWWfgH2Ty4RR8BhoHS1WXpx9euKtXqqhs,259
|
654
659
|
scout/server/static/robots.txt,sha256=fFX0beQN4x3mzR3evnZjrOUYOTNkezYAwqMowTUpmxM,106
|
@@ -663,6 +668,7 @@ scout/update/panel.py,sha256=4z-vQ7GVIJXtlIub9pubFcQ-I9mLX5fRXKNPBdpuhJw,1649
|
|
663
668
|
scout/utils/__init__.py,sha256=DHCMH05dxkyD7m9QSs0WXsQQPgVRFQ9XvyNeNpHjjvg,74
|
664
669
|
scout/utils/acmg.py,sha256=UCyvfg3Wx4-janh4L7LPRtFI6oigwlPAzns-aydPy8U,11540
|
665
670
|
scout/utils/algorithms.py,sha256=w--NauXbQohZis7obr39a8bS57C4NRelYXn79V7m1dU,800
|
671
|
+
scout/utils/ccv.py,sha256=85lY7uSjHg3VAfWOfrx9jnaDUQXSa5hDQcRIqZ_Ikas,6025
|
666
672
|
scout/utils/convert.py,sha256=asrsis3zkt9jXzseRmCqSa4_t1UT73HPPQRW-DKDdqE,1794
|
667
673
|
scout/utils/coordinates.py,sha256=n8WUFn9zohXfjxgFGryyg6mzdl0zBG8uVCdyjhizSpM,609
|
668
674
|
scout/utils/date.py,sha256=GUALqEIgWtbopqC9wJnVKmVm5FRq111iz4RfojUIfG0,1334
|
@@ -677,9 +683,9 @@ scout/utils/md5.py,sha256=KkgdxOf7xbF9AF40ZjQKCgWaxFWJ9tp9RKjd8SU6IoA,649
|
|
677
683
|
scout/utils/scout_requests.py,sha256=lgPumNI_EikBZR1m9ztZI_mZAfV29y1KGoiBv9kejzQ,12797
|
678
684
|
scout/utils/sort.py,sha256=1AcbeZ6vdt_UXM3BLDBa3aQmN4qxrqtskxwD19oBhvw,756
|
679
685
|
scout/utils/track_resources.py,sha256=eUjSEe-Ff8BIb4BHPC_COkJocQO2PaWueiPz1GAuiwY,2614
|
680
|
-
scout_browser-4.
|
681
|
-
scout_browser-4.
|
682
|
-
scout_browser-4.
|
683
|
-
scout_browser-4.
|
684
|
-
scout_browser-4.
|
685
|
-
scout_browser-4.
|
686
|
+
scout_browser-4.93.1.dist-info/LICENSE,sha256=TM1Y9Cqbwk55JVfxD-_bpGLtZQAeN9RovQlqHK6eOTY,1485
|
687
|
+
scout_browser-4.93.1.dist-info/METADATA,sha256=OKsRo0nvHP2tVP3vzUfhPN5T34XvOwXA3u4n_dVPjLM,14293
|
688
|
+
scout_browser-4.93.1.dist-info/WHEEL,sha256=PZUExdf71Ui_so67QXpySuHtCi3-J3wvF4ORK6k_S8U,91
|
689
|
+
scout_browser-4.93.1.dist-info/entry_points.txt,sha256=q_mxFwbMFTwXRDDIRVcqKram2ubMVmvs3CSNvZri1nY,45
|
690
|
+
scout_browser-4.93.1.dist-info/top_level.txt,sha256=qM75h71bztMaLYsxn1up4c_n2rjc_ZnyaW6Q0K5uOXc,6
|
691
|
+
scout_browser-4.93.1.dist-info/RECORD,,
|
Binary file
|
File without changes
|
File without changes
|
File without changes
|