scout-browser 4.90.1__py3-none-any.whl → 4.91__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (62) hide show
  1. scout/__version__.py +1 -1
  2. scout/adapter/mongo/case.py +27 -38
  3. scout/commands/export/variant.py +14 -4
  4. scout/commands/load/panel.py +2 -1
  5. scout/commands/update/panelapp.py +11 -3
  6. scout/commands/view/case.py +2 -2
  7. scout/constants/__init__.py +1 -2
  8. scout/constants/acmg.py +15 -15
  9. scout/constants/case_tags.py +0 -46
  10. scout/constants/clnsig.py +2 -1
  11. scout/constants/gene_tags.py +0 -6
  12. scout/constants/panels.py +16 -0
  13. scout/constants/variants_export.py +2 -0
  14. scout/demo/__init__.py +4 -1
  15. scout/demo/panelapp_panel.json +463 -0
  16. scout/demo/panelapp_panels_reduced.json +37 -0
  17. scout/load/panel.py +3 -142
  18. scout/load/panelapp.py +138 -0
  19. scout/models/case/case_loading_models.py +5 -4
  20. scout/parse/panel.py +3 -117
  21. scout/parse/panelapp.py +112 -0
  22. scout/parse/variant/clnsig.py +26 -21
  23. scout/parse/variant/genotype.py +6 -5
  24. scout/server/blueprints/alignviewers/controllers.py +7 -5
  25. scout/server/blueprints/alignviewers/templates/alignviewers/utils.html +1 -1
  26. scout/server/blueprints/cases/templates/cases/case_sma.html +49 -42
  27. scout/server/blueprints/cases/templates/cases/collapsible_actionbar.html +27 -12
  28. scout/server/blueprints/cases/views.py +18 -7
  29. scout/server/blueprints/clinvar/templates/clinvar/clinvar_submissions.html +7 -7
  30. scout/server/blueprints/clinvar/templates/clinvar/multistep_add_variant.html +2 -2
  31. scout/server/blueprints/dashboard/controllers.py +128 -165
  32. scout/server/blueprints/dashboard/forms.py +3 -13
  33. scout/server/blueprints/dashboard/templates/dashboard/dashboard_general.html +17 -22
  34. scout/server/blueprints/institutes/forms.py +1 -2
  35. scout/server/blueprints/institutes/templates/overview/cases.html +2 -133
  36. scout/server/blueprints/institutes/templates/overview/utils.html +135 -0
  37. scout/server/blueprints/omics_variants/templates/omics_variants/outliers.html +5 -0
  38. scout/server/blueprints/panels/templates/panels/panel.html +5 -1
  39. scout/server/blueprints/panels/templates/panels/panel_pdf_simple.html +5 -1
  40. scout/server/blueprints/variant/controllers.py +6 -1
  41. scout/server/blueprints/variant/templates/variant/buttons.html +11 -10
  42. scout/server/blueprints/variant/templates/variant/components.html +63 -44
  43. scout/server/blueprints/variant/templates/variant/str-variant-reviewer.html +1 -1
  44. scout/server/blueprints/variant/templates/variant/utils.html +38 -10
  45. scout/server/blueprints/variant/templates/variant/variant.html +1 -1
  46. scout/server/blueprints/variants/controllers.py +9 -4
  47. scout/server/blueprints/variants/templates/variants/cancer-sv-variants.html +9 -5
  48. scout/server/blueprints/variants/templates/variants/cancer-variants.html +6 -17
  49. scout/server/blueprints/variants/templates/variants/str-variants.html +2 -2
  50. scout/server/blueprints/variants/templates/variants/sv-variants.html +8 -1
  51. scout/server/blueprints/variants/templates/variants/utils.html +14 -0
  52. scout/server/extensions/__init__.py +2 -0
  53. scout/server/extensions/panelapp_extension.py +75 -0
  54. scout/server/links.py +19 -1
  55. scout/server/utils.py +25 -33
  56. {scout_browser-4.90.1.dist-info → scout_browser-4.91.dist-info}/METADATA +1 -1
  57. {scout_browser-4.90.1.dist-info → scout_browser-4.91.dist-info}/RECORD +61 -57
  58. {scout_browser-4.90.1.dist-info → scout_browser-4.91.dist-info}/WHEEL +1 -1
  59. scout/demo/panelapp_test_panel.json +0 -79
  60. {scout_browser-4.90.1.dist-info → scout_browser-4.91.dist-info}/LICENSE +0 -0
  61. {scout_browser-4.90.1.dist-info → scout_browser-4.91.dist-info}/entry_points.txt +0 -0
  62. {scout_browser-4.90.1.dist-info → scout_browser-4.91.dist-info}/top_level.txt +0 -0
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: scout-browser
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- Version: 4.90.1
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+ Version: 4.91
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  Summary: Clinical DNA variant visualizer and browser.
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  Home-page: https://github.com/Clinical-Genomics/scout
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  Author: Måns Magnusson
@@ -1,11 +1,11 @@
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  scout/__init__.py,sha256=Z4liXvmEcLkC67ElsWvYHfemPKdWgWI5O6MB6XlDM8M,232
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- scout/__version__.py,sha256=HwaUgvr7vVd4G7ToKJp_i-XsLxlwHhzOtnwwakNIMs8,23
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+ scout/__version__.py,sha256=7iYANz6x54GsuXMxM9O1FhcxeKaYUGIOtQ7KWMWzlOc,21
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  scout/adapter/__init__.py,sha256=-iX_hx2NI1EMAqX0pMd5_90Nnd9uvIMxv9EbefYBzsc,86
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  scout/adapter/client.py,sha256=IuajRsEwTG41ZP14X09Q1Cj94zIgmIvUtlXfcAFn0EA,1513
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  scout/adapter/mongo/__init__.py,sha256=NdHYCUXWUAuX5cUS3-6HCws2hW9uoGep8i0SC-oJd3k,31
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  scout/adapter/mongo/acmg.py,sha256=v2Zuw-6APVmcnBnNXa18WJEu2vj5GUhZNiKMkruJsBI,4170
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  scout/adapter/mongo/base.py,sha256=yiaEmybAjLiCdAKouT0TET9aM2U-PtQm3En52MHR7Zs,4340
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- scout/adapter/mongo/case.py,sha256=HRm7KK7moV2V9lvnrFIqOWRt4FkX1a_Nhgdmlmn6zpU,64491
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+ scout/adapter/mongo/case.py,sha256=mNqtFwmFcdAHNTjiIrRNzbXbPvYeUA_yCjMt9d2K2xw,63931
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  scout/adapter/mongo/case_events.py,sha256=slHR4XJF9vRuEbuInJKMMAImLF8m7tHWVfGP42fbXr0,26859
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  scout/adapter/mongo/case_group.py,sha256=tG8DuO0rNYepV4k0yCGPqssODErc0HMsAypg3mfhcV0,1575
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  scout/adapter/mongo/clinvar.py,sha256=tczC39O3DFDkYgjt2RDgkkG-x1Mvx_99Hw7dAbIQ5gk,19838
@@ -80,14 +80,14 @@ scout/commands/export/mitochondrial_report.py,sha256=vglirazMK0gVgl6FMzls4ZhMQI_
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  scout/commands/export/panel.py,sha256=Tt4wPxptpNKHHwKrYyPIkR0eIz6ad6-MB98_PRFFYW4,1336
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  scout/commands/export/transcript.py,sha256=J92-ZIyVaarPFyajiqr9_RlpCbdWtTpbPd5VpRWyYLs,1024
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  scout/commands/export/utils.py,sha256=kvm7OaLCzPVaC0HnQLO_034akDc0nlPFWLtLe8P2a10,300
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- scout/commands/export/variant.py,sha256=1XwbkKzEDHSot1F3iHL_47Rq11_TkKRgcVB2tCcnXSc,7164
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+ scout/commands/export/variant.py,sha256=p7H6KMR_Ysr2GF66RnXYjZ9yPB_B3K8ofyOYNFDoAW4,7502
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  scout/commands/load/__init__.py,sha256=qwXkYqeL2oNJ1zoWh_83Np4JjwWWwQqp5L9vTOC6VS0,23
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  scout/commands/load/base.py,sha256=4dU7CdTPpAhsLaw20eRTJ2MRyEsPGJK33F6em0TxDnI,1406
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  scout/commands/load/case.py,sha256=BD-qoDp5GjVBfTgUM8MihCoNWVgOysOviHO6kqkfcWY,4150
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  scout/commands/load/cytoband.py,sha256=mPIL7RrcENUtY8oXpKp_Ej69jdvk6M5ax3KlWEvXWeA,935
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  scout/commands/load/exons.py,sha256=isxBFR0is5TFvv4j0PHB4KqmHFJHQ0TLQBudrjKmuUI,1887
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  scout/commands/load/institute.py,sha256=EYbDeWmpeRl0_jBnsckAp6qua5VyZKpczoHfADfYIDQ,1060
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- scout/commands/load/panel.py,sha256=dgrOh4T3qghXzpeXu6EKMfR2WOD_RXUfk536HArT06c,2894
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+ scout/commands/load/panel.py,sha256=kx6HpFYcYgPwTLsgarjM7eL43bkZwpPj__I_gqjGN60,2925
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  scout/commands/load/region.py,sha256=psICLlMf5WBdSCgXsJZUsM8fICsTJB3Q6U6dB5S6w_8,869
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  scout/commands/load/report.py,sha256=DrnyOJcLbOUUJHzI3jwlj955zYohvjuTeeoeUS_ZU8Q,3564
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  scout/commands/load/research.py,sha256=6GBKJY3POQyGxfPwcfj06tcCX48CBTZqq8MSdjevBjM,4426
@@ -106,13 +106,13 @@ scout/commands/update/individual.py,sha256=z2NY4f97GuYPRX7UCwSqbUMi-l-W0bRqN2xF6
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  scout/commands/update/institute.py,sha256=ms8mmTGfCXqxeh_vSB1cdNDGrdHoSSgh9ryhB5GrJQc,1727
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  scout/commands/update/omim.py,sha256=s39qterBGhtBfW7Uc-IJabni93PIhT8shqVbkmQBb9k,2309
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  scout/commands/update/panel.py,sha256=990shZ15k5pwHUkd767o8oQ5iqVIpgRA7N_9yv1_eqc,2912
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- scout/commands/update/panelapp.py,sha256=T0BPkhxXAd7UPQoKSiJlZgasFsSUO6scCip5o4SStfo,1281
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+ scout/commands/update/panelapp.py,sha256=UZ-k0UpVTM-scSg_pZdih84ZbYdTBtllouM87iMDx_0,1460
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  scout/commands/update/phenotype_groups.py,sha256=Ll0COlEckn1Z7VAJbFbG2EZ5FKFVEcff0sWiUsx-D-g,1980
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  scout/commands/update/user.py,sha256=s5s7nh9UABBO9P6L11_j5tsi4iPxzieHw40yDhc4PWM,2497
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  scout/commands/view/__init__.py,sha256=ZtRW7UBNf1rPnlCslBVcmjafOPg9WTPpn4xxlAA0wMo,23
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  scout/commands/view/aliases.py,sha256=M0hTBHk_cyW-BG0cNz5T3q20waYP4ktTfTCzCtkTUs0,1995
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  scout/commands/view/base.py,sha256=Lz2cB7yTPjHXLgDu3aumHm6d4ozAKEA5V5ff1NAT4wA,1000
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- scout/commands/view/case.py,sha256=URYiGsOS7phPzXh_HNxZfZLQpiFbDgPIlD8OK9BZAnM,3223
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+ scout/commands/view/case.py,sha256=O66_4bk7GOipdqP0Eza0xw9DFkh6e7wIAc7_egC2o8A,3266
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  scout/commands/view/collections.py,sha256=RsO941NK29TJs1mWtof2qGhxqWlj7oBTu8WFIjzxnxs,453
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  scout/commands/view/diseases.py,sha256=XJWz6xrIsyCbdA9-6XDXyRiSnv1oQ-eRZur3BdQ8Tr8,704
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  scout/commands/view/hgnc.py,sha256=VQcDnYuDbcfkh9mxUJgZwXMAymj449By4NjXNwRfb18,1304
@@ -124,23 +124,23 @@ scout/commands/view/intervals.py,sha256=8Pofxy0DwL2Euh3SdnTLLWsU6DjLNOwIGdxeCS83
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  scout/commands/view/panels.py,sha256=a0fQcP9-SDPuRYV7aEgIGUCYaMN6V47h6finpcdoomU,1098
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  scout/commands/view/transcripts.py,sha256=59WyNNp7zHPJIz9QgzrkoeKaSXTtuLli0VuL8IidEmY,1277
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  scout/commands/view/users.py,sha256=MKlmhDYRM7Yf-Trmi1ijEuqsDIUn326bdFADyDs7XYg,832
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- scout/constants/__init__.py,sha256=0pFfxITRK6MlBgSkincam0XeuH7O4AVt5mYxnfzfQ4g,5768
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- scout/constants/acmg.py,sha256=YATAEJAzM_EkeG9meCFMavO8p9PS-RBCpqb4Seibuos,17557
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- scout/constants/case_tags.py,sha256=wWtiSYVsRQiXml5m8-J1JsMUGKsv1smIszNleyc4Lgw,11119
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+ scout/constants/__init__.py,sha256=HZvAMX-37ugK0fRwa8xKGvnZkicyUJH-SH2pqw7rm-g,5760
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+ scout/constants/acmg.py,sha256=hYPzoLUqpuTjGXfIN80Nb1njriesH9oAELu1scp-ByU,18083
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+ scout/constants/case_tags.py,sha256=EvLYtbZADyFEngeY8rvPsJ_1NdLmHrlnrGTlnj7tGGs,9336
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  scout/constants/clinvar.py,sha256=nr7KhwMIO_7taNQokRJlpgZfenMlKsdPIMpdOx3TwKY,5594
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- scout/constants/clnsig.py,sha256=2u_avIzWO_IPJGcTOoSB7_xqgu5JBl_zZZfT8UVpY90,1359
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+ scout/constants/clnsig.py,sha256=5Z4fZU__ej9teXK4hD9vGhIGmaGL6PoJqK5GuzLWxpE,1414
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  scout/constants/disease_parsing.py,sha256=M9_OgsN88oXwKH_XpxdDma0zuWPRoHFQjL19tzojBPo,686
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  scout/constants/file_types.py,sha256=3BU2cw40cHMT5IzEGEF_SsIhgYUbnIlUCRmwmB01fzI,3046
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  scout/constants/filters.py,sha256=1bcj-z7__yv5eQpjB60wqSHZ3U5U0CVyNbcYT-Wn-vc,957
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- scout/constants/gene_tags.py,sha256=qn2CMlvP-8c5TmWulAS8921MfCEXFWwjLNTs44-8TDw,3986
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+ scout/constants/gene_tags.py,sha256=pRRsjn9zYGR3nLFKxe1gOYqWm4uQbpfxYzfRxcptxqA,3856
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  scout/constants/igv_tracks.py,sha256=NbBBnM3s1S8cJM_S36qi7SU2ACW_lJVS6EP2W0kCTIQ,4697
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  scout/constants/indexes.py,sha256=-rb5VP68Arl2t-bFDYWiQswAF3YxjrAJVuMtQWrT__8,5497
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- scout/constants/panels.py,sha256=Ku-VwbVVOnBcxnbL4ThVBBcHY42XXg-ybTxNjJU7TZ4,437
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+ scout/constants/panels.py,sha256=X38XGPlNgOGhXHt5mSpryOS7gMeP-tUD1t1WIT2G5wM,785
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  scout/constants/phenotype.py,sha256=MrbXirisR_7GPnxV3NOj3-BoM9CvtGgFZj7PfJu85RM,2331
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  scout/constants/query_terms.py,sha256=2A4CuTgc7W_VMj4atkJdZFfvBATu7OQg51udFM0rMOo,1574
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- scout/constants/variants_export.py,sha256=ee3dyM6CifvPUU4zsVwYzG9Dptn3qBBhP72olHHJ6i4,1942
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+ scout/constants/variants_export.py,sha256=uQvFsbRMdbgl39HUdGWzFAEe1KOHp5OgvhjbGMD3O_Q,1969
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@@ -184,7 +184,7 @@ scout/demo/ADM1059A2.d4,sha256=M4ubAb6oVkr8dOkvkROkTr76nACfE4eSWHiUKN5FRLg,61119
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  scout/demo/ADM1059A3.test.cgh,sha256=29YOnGgPB3wxWwxVwf_mCLrhZ4Cf5hqVxw_DUggBe7Y,29
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- scout/demo/__init__.py,sha256=RtiGb6BjlkfdhsT2nbZ6li-1C4XhzOXDgFUGYPgOk5U,1949
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+ scout/demo/__init__.py,sha256=ggXVz3_6ZUAzIZtuaK8kz3C6BuxSfaQ56PAzinJcYoI,2061
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@@ -204,7 +204,8 @@ scout/demo/madeline.xml,sha256=5gVlcdFYYs6LUq1jdgcxUMirICf7dX3eEhVHmDmapQU,5190
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+ scout/demo/panelapp_panel.json,sha256=NZYiqWAQ1J1_m8bRYu-T6MMVcr-3vCZk7Q_57UldJUo,12144
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+ scout/demo/panelapp_panels_reduced.json,sha256=dwvRRwfIIFq6H4ze0wyOIllN-LSreK5jhLZmmdlkdIU,844
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@@ -371,7 +372,8 @@ scout/load/exon.py,sha256=ONaWJ9EfbhGV8KGXxwlq_jYCoU-JkBpv4r9zDaCjtls,2070
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  scout/load/institute.py,sha256=etmZ0CZRHOVi3f9R-wn5BK1pZPhtZwq2QYbh2RXXxDc,625
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- scout/load/panel.py,sha256=Zxv-ZlRyk7ZWKy1p0Cod-ATh7TzKqeMbiLu5I6-VEzs,10246
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+ scout/load/panel.py,sha256=MY5M7-lDzVXt5RJH87N28TB7awdM6s-SoawholTl2GM,4776
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+ scout/load/panelapp.py,sha256=_Ptf4hQYjJtntoBTVeeLG_OfVONt-BtLtAtRV8TM9B8,5735
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  scout/load/report.py,sha256=TJvblks6Dp5-UDflWRTa8b3fe-A4bT4QnWT2yZLhfLA,820
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@@ -393,7 +395,7 @@ scout/models/phenotype_term.py,sha256=jY7dbfPzgE14M1gWqifm5YKkwMlrtfFa_WBHMT1_og
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- scout/models/case/case_loading_models.py,sha256=n__1UVOKnaGnqytjAZhIuhfRyJcoiZTxDIeMtMPQkNw,21514
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+ scout/models/case/case_loading_models.py,sha256=GNeXZFrJ_1ISSxqO2VpKXazCLksLsPbTNL67csIIwQQ,21568
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@@ -411,21 +413,22 @@ scout/parse/matchmaker.py,sha256=eeAfyB8ObLIKveUL50i3YTBeZphqYhMCiz-4t2-dATI,985
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- scout/parse/panel.py,sha256=my6fm8wfZF_-EOQZHtXO6vedMoBuPIiZxbd7H4bsDEk,13191
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+ scout/parse/panel.py,sha256=J28e_MkKeB5r4hOutb3qimxUT7G5yg8x1Ca4bAs0I_c,9577
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+ scout/parse/panelapp.py,sha256=1UAKBm48tKlfDpNb_VH_kfqO8tgduXRSIQnWa61Fzrc,3944
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- scout/parse/variant/clnsig.py,sha256=7egXPwXzaIMTj7dnKnsaHpgZa-STSoBqB1ZlpOS4RYA,4606
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+ scout/parse/variant/clnsig.py,sha256=p5YNF_H1x6h1lTJX0D06Z9G1NfwQJ1WjnLauK1Oli28,4951
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- scout/parse/variant/genotype.py,sha256=QDSn9dRpbyNQgbu5rQtRAp3k1XQkiem_3B9H6ttMaKA,16495
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+ scout/parse/variant/genotype.py,sha256=IqoH3UOd34ZrPE1xkDDmXavDEYe10D5mH9zf20E_BTA,16553
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@@ -440,21 +443,21 @@ scout/server/__init__.py,sha256=iwhKnzeBJLKxpRVjvzwiRE63_zNpIBfaKLITauVph-0,24
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- scout/server/links.py,sha256=WjExw0fWrMDtZidSFklNWkRuiQMNzfaYP_x3uA19gAg,27379
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- scout/server/utils.py,sha256=lhFJI6UkNDD1OPnC53SYG2vjfMNmjp4BBf1tcO8R-ZM,12634
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+ scout/server/links.py,sha256=UdYqYyRHh7v1gGtP-F3UYBdT3-49ySqiv9VkCnHX5ZU,28115
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+ scout/server/utils.py,sha256=d1fGdSwo-XjNHVjHd-uT3mGmUJ8yYB6weT7VgHo9nxM,12592
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  scout/server/blueprints/alignviewers/__init__.py,sha256=XMVed2ekVUAvroqENDHSr2pwM8otqau8ZA-rbH1T2U8,59
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- scout/server/blueprints/alignviewers/controllers.py,sha256=PumR2UMmJSAXoKZkyaPIVK83hcPSjXHXMrPfL-GKJ1s,14053
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+ scout/server/blueprints/alignviewers/controllers.py,sha256=EtNKOBw_4Ba4aNskBTQrDW5Mo4siccRXrpIYbgqURzI,14316
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- scout/server/blueprints/alignviewers/templates/alignviewers/utils.html,sha256=hnyQifeqxIQ2vNAPs9OgjAuQfcVrPe46C23RUJJFHXA,336
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+ scout/server/blueprints/alignviewers/templates/alignviewers/utils.html,sha256=42-nInL7rRVAmXwq6mdbF8Kz-91O3Ni8OWmU4qdGmfY,336
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  scout/server/blueprints/api/__init__.py,sha256=HR6HjS7ot1K_8Lt5eQdNT154z_FCdHGSigy8r2LpNCI,26
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- scout/server/blueprints/cases/views.py,sha256=ZfuDfkcOiw7PHUr68mowJyYxUb6_gQObR488mhP6l78,42841
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+ scout/server/blueprints/cases/views.py,sha256=NCBYZl56jrdmwip4-UXq0-1oH9Y0EddTVDXdCVpmCws,43141
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  scout/server/blueprints/cases/static/edit_pedigree.js,sha256=ntC5fie7SsOYJau8qkke1UHxjiYWY_gBzWcIkGpdJUA,2978
@@ -462,10 +465,10 @@ scout/server/blueprints/cases/static/madeline.js,sha256=KHxKMBVlYVJODNu5QkY9hhsG
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  scout/server/blueprints/cases/templates/cases/case.html,sha256=9Fcn-OFA1yIHchD0PjDs7-Y8I7Qqr8o6cavN0eOi5rI,37183
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  scout/server/blueprints/cases/templates/cases/case_bionano.html,sha256=PLoRv7hDJcHwxhi-0hC9fQSZc7V_aUYHBhhQqcn_2G8,5946
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  scout/server/blueprints/cases/templates/cases/case_report.html,sha256=y7aSvMGQoM8jOt93sBrXBvTkhtE7hIVU2jaoSA6FpM8,63309
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- scout/server/blueprints/cases/templates/cases/case_sma.html,sha256=RF1510IuT5xtiBEzDFaGp-3CpfjMdtJnjT85_U5qtUk,7108
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+ scout/server/blueprints/cases/templates/cases/case_sma.html,sha256=99rmRyDXFXjooB52TI5_ebJKv1ZAJbVXEw4deHfSVMA,7285
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- scout/server/blueprints/cases/templates/cases/collapsible_actionbar.html,sha256=J5rtjQyNtmnyPcMHLM3SLxlxKp8vMk3BL_WEGRZaWJ8,29797
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+ scout/server/blueprints/cases/templates/cases/collapsible_actionbar.html,sha256=Pxntd8zeThzwQrxjRpB-sGHcbMjBdsXCHnEF196tddU,30859
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  scout/server/blueprints/cases/templates/cases/diseases.html,sha256=ETTQI0Nrl_v86NoX9mFZcvWD-qM1IJoqPmHPWn__Grw,1677
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@@ -480,14 +483,14 @@ scout/server/blueprints/clinvar/form.py,sha256=2h42YJzaOtsdEglxqt7F1i2ncjSU_IHNt
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  scout/server/blueprints/clinvar/views.py,sha256=hPyTJA7Qy6QOL-ENSG1N0atnQXuYCb-iiO8fuNDjJns,6036
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- scout/server/blueprints/clinvar/templates/clinvar/clinvar_submissions.html,sha256=fNIglI_Bs04wp0YnD5E8hXQTWvukyaH2PQnOIzbXV6w,18229
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- scout/server/blueprints/clinvar/templates/clinvar/multistep_add_variant.html,sha256=dBrIRJLcbW0bI2n2QoeZLgr91S8kJmzHYFVnDgUkP24,31987
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+ scout/server/blueprints/clinvar/templates/clinvar/clinvar_submissions.html,sha256=NqR66lFN-Svm0IC0FZTts1oPK8S80t69SRSgT-727LA,18185
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+ scout/server/blueprints/clinvar/templates/clinvar/multistep_add_variant.html,sha256=zfU_dPLtjiX8NE7IGTfABt9q46Li8rWFXyyMSvc_U-E,32017
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  scout/server/blueprints/dashboard/__init__.py,sha256=9YTjGeFexyEbl4P-gs7j8VEjyhnVwHZFfz57eTtod1M,69
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- scout/server/blueprints/dashboard/controllers.py,sha256=c0oOVzyHmQEypQPGRr8Kh_QdKidMjwqPd9UF1_kFLIk,10698
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- scout/server/blueprints/dashboard/forms.py,sha256=CgwCHGZcxi08-04hwlw-rXZau_C9X2Qoq1ayTd533qY,826
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+ scout/server/blueprints/dashboard/controllers.py,sha256=x6EWKROskF4iyZ5_hAgL7CWp1X3CXHp-7v0JVsDHKZU,9612
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+ scout/server/blueprints/dashboard/forms.py,sha256=vbdkujKZxVjiZw2inNhysN3yYMPCdMPbqvKV88DamwI,501
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- scout/server/blueprints/dashboard/templates/dashboard/dashboard_general.html,sha256=WhOzXojmDJJfgOjERM_PlM8J7OafdUbJuXK-9oqbPto,6504
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+ scout/server/blueprints/dashboard/templates/dashboard/dashboard_general.html,sha256=8l1ulf4URSerw8TvKE1-W1AXPTTjXiM5F2tFH3O238Q,6218
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@@ -502,13 +505,13 @@ scout/server/blueprints/genes/templates/genes/genes.html,sha256=x6jXKijvuEX9GvIe
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- scout/server/blueprints/institutes/forms.py,sha256=BkiCyhrj9uSoQA85ehx7neAehg4odvT1ie0KxJ6vf0Y,6732
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+ scout/server/blueprints/institutes/forms.py,sha256=gjVNdKt7hIrNk_JOwCDRuOXiOrE9kS41VZQuTkkmkk8,6615
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- scout/server/blueprints/institutes/templates/overview/cases.html,sha256=ej7HZMT3pwzjymO7B3QoK6QUqsPd6qhRv_fFzdTBMgw,19635
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+ scout/server/blueprints/institutes/templates/overview/cases.html,sha256=7-9nUomP6iaqXGtf6GemVECYMG2nD-h64RKTAmLkof0,12758
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@@ -516,7 +519,7 @@ scout/server/blueprints/institutes/templates/overview/institute_settings.html,sh
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  scout/server/blueprints/institutes/templates/overview/users.html,sha256=6dkbDBNLw2b97M2Pd8JImpPoT3FLTcl84oBN3inLJRg,1134
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- scout/server/blueprints/institutes/templates/overview/utils.html,sha256=cL73OTRS4J8_8A5tV37Ieb62XkI0tadjLQK0BKbR5E0,25170
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+ scout/server/blueprints/institutes/templates/overview/utils.html,sha256=9SyEvWcckgQJRxrxmSSqzLwyTO121O6WjNSj-CUrWoQ,32555
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  scout/server/blueprints/institutes/templates/overview/verified.html,sha256=_zdTAiJ80brlWDqBho_DveY8cJMzmednck26uni6Vmo,3354
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  scout/server/blueprints/login/controllers.py,sha256=bg0me00OvwYJiTm4dZnbl8eyRRRDquBMs5U7_YV4xWI,1883
@@ -539,15 +542,15 @@ scout/server/blueprints/managed_variants/templates/managed_variants/managed_vari
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- scout/server/blueprints/omics_variants/templates/omics_variants/outliers.html,sha256=ZH6DVL1MKylB31J7XQip96A2KTeuBKd8nW5UjzN3tEU,13291
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+ scout/server/blueprints/omics_variants/templates/omics_variants/outliers.html,sha256=hd8vxHY1hBqiyvgefLK3S_i_VnOgGwCJLmJUxiJhB4M,13733
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- scout/server/blueprints/panels/templates/panels/panel.html,sha256=5ljhcRaJb1EYjesM_VFj0ZGAasKBkPvv_dkaTa3TlVc,16112
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+ scout/server/blueprints/panels/templates/panels/panel.html,sha256=qMdyxia0Oei83ECR6TTxOn62hh447XuGFF_TD63NP6E,16527
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- scout/server/blueprints/panels/templates/panels/panel_pdf_simple.html,sha256=OBBDrtj--Vovu5fFtKydCsenucib3HeSdRDOjfA5bIU,2561
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+ scout/server/blueprints/panels/templates/panels/panel_pdf_simple.html,sha256=cpOnQzeKYnQwXosTKk9hkiBigJJLS3Q_y2oHDR3C8io,2744
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  scout/server/blueprints/phenomodels/__init__.py,sha256=Kb1fqfCn-QsH5mz6hiuQ2DiC7icTClD4HLey6QN4GD4,34
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@@ -597,40 +600,40 @@ scout/server/blueprints/public/static/ideograms/chromosome-X.png,sha256=Dj7npcW_
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  scout/server/blueprints/variants/templates/variants/variants.html,sha256=KnCcsA1VaRdsbRCCw9Rg0TJTUvq03X9S24QgCqVToUk,9328
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641
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  scout/server/extensions/mongo_extension.py,sha256=bKB0K5ibp-BWynOTgzBJd5qIYO0S9zRtEyDUw7EoxSQ,1029
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  scout/server/extensions/phenopacket_extension.py,sha256=kcEUIOSfkQAlAmUm07hQS1BeUjeN4lBc-InvaNtbFxo,7295
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646
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  scout/server/static/bs_styles.css,sha256=Y7aq8Es3NHj1OaLPX0eiY5485C8gENptpuYmf7W3o1w,6421
@@ -673,9 +677,9 @@ scout/utils/md5.py,sha256=KkgdxOf7xbF9AF40ZjQKCgWaxFWJ9tp9RKjd8SU6IoA,649
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@@ -1,5 +1,5 @@
1
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  Wheel-Version: 1.0
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- Generator: bdist_wheel (0.44.0)
2
+ Generator: bdist_wheel (0.45.0)
3
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  Root-Is-Purelib: true
4
4
  Tag: py3-none-any
5
5
 
@@ -1,79 +0,0 @@
1
- {
2
- "result": {
3
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4
- {
5
- "GeneSymbol": "CDK4",
6
- "EnsembleGeneIds": [
7
- "ENSG00000135446"
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- "ModeOfInheritance": "monoallelic",
10
- "Penetrance": null,
11
- "Publications": null,
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- "ModeOfPathogenicity": null,
14
- "LevelOfConfidence": "HighEvidence",
15
- "Evidences": [
16
- "Expert Review Green",
17
- "NHS GMS",
18
- "Expert List"
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- ]
20
- },
21
- {
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- "GeneSymbol": "C19orf49",
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- "ENSG00000105429"
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- "ModeOfInheritance": "biallelic",
27
- "Penetrance": null,
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- "Publications": [
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- "23063620"
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- ],
31
- "Phenotypes": [
32
- "Polydactyly",
33
- "Carpenter syndrome 2 614976"
34
- ],
35
- "ModeOfPathogenicity": null,
36
- "LevelOfConfidence": "HighEvidence",
37
- "Evidences": [
38
- "Expert Review Green",
39
- "Victorian Clinical Genetics Services"
40
- ]
41
- },
42
- {
43
- "GeneSymbol": "POT1",
44
- "EnsembleGeneIds": [
45
- "ENSG00000128513"
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- ],
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- "ModeOfInheritance": "monoallelic",
48
- "Penetrance": null,
49
- "Publications": [
50
- "24686849",
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- "24686846",
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- "29523635",
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- "30451293",
54
- "30586141",
55
- "32325837",
56
- "32907878"
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- ],
58
- "Phenotypes": [
59
- "Melanoma, cutaneous malignant, susceptibility to, 10, OMIM:615848"
60
- ],
61
- "ModeOfPathogenicity": null,
62
- "LevelOfConfidence": "HighEvidence",
63
- "Evidences": [
64
- "Expert Review Green",
65
- "NHS GMS",
66
- "Expert List"
67
- ]
68
- }
69
- ],
70
- "STRs": [],
71
- "Regions": [],
72
- "SpecificDiseaseName": "Panel for testing PanelApp panels loading",
73
- "version": "1.12",
74
- "Created": "2022-06-22T10:25:36.859855Z",
75
- "DiseaseGroup": "",
76
- "DiseaseSubGroup": "",
77
- "Status": "public"
78
- }
79
- }