scout-browser 4.89.2__py3-none-any.whl → 4.90.1__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- scout/__version__.py +1 -1
- scout/adapter/mongo/panel.py +21 -58
- scout/adapter/mongo/query.py +9 -0
- scout/build/panel.py +36 -72
- scout/constants/__init__.py +28 -45
- scout/constants/acmg.py +76 -16
- scout/constants/gene_tags.py +4 -2
- scout/constants/panels.py +11 -0
- scout/constants/query_terms.py +1 -0
- scout/constants/variant_tags.py +58 -3
- scout/export/panel.py +30 -33
- scout/parse/matchmaker.py +18 -6
- scout/parse/panel.py +40 -49
- scout/server/blueprints/alignviewers/views.py +3 -0
- scout/server/blueprints/cases/controllers.py +4 -0
- scout/server/blueprints/cases/templates/cases/case_sma.html +14 -6
- scout/server/blueprints/cases/templates/cases/collapsible_actionbar.html +10 -2
- scout/server/blueprints/cases/templates/cases/matchmaker.html +12 -7
- scout/server/blueprints/institutes/controllers.py +11 -4
- scout/server/blueprints/institutes/templates/overview/causatives.html +1 -1
- scout/server/blueprints/institutes/templates/overview/gene_variants.html +3 -5
- scout/server/blueprints/institutes/templates/overview/utils.html +2 -2
- scout/server/blueprints/institutes/templates/overview/verified.html +1 -1
- scout/server/blueprints/institutes/views.py +22 -6
- scout/server/blueprints/omics_variants/templates/omics_variants/outliers.html +1 -1
- scout/server/blueprints/omics_variants/views.py +2 -0
- scout/server/blueprints/panels/controllers.py +8 -16
- scout/server/blueprints/panels/templates/panels/gene-edit.html +2 -2
- scout/server/blueprints/panels/templates/panels/panel.html +21 -13
- scout/server/blueprints/panels/templates/panels/panel_pdf_simple.html +25 -18
- scout/server/blueprints/panels/views.py +9 -6
- scout/server/blueprints/variant/templates/variant/acmg.html +28 -24
- scout/server/blueprints/variant/templates/variant/gene_disease_relations.html +1 -3
- scout/server/blueprints/variant/templates/variant/utils.html +1 -1
- scout/server/blueprints/variant/utils.py +1 -0
- scout/server/blueprints/variant/views.py +5 -2
- scout/server/blueprints/variants/templates/variants/cancer-sv-variants.html +7 -11
- scout/server/blueprints/variants/templates/variants/components.html +55 -38
- scout/server/blueprints/variants/templates/variants/mei-variants.html +2 -6
- scout/server/blueprints/variants/templates/variants/str-variants.html +8 -2
- scout/server/blueprints/variants/templates/variants/sv-variants.html +4 -8
- scout/server/blueprints/variants/templates/variants/variants.html +23 -18
- scout/server/blueprints/variants/views.py +6 -0
- scout/utils/acmg.py +155 -28
- scout/utils/scout_requests.py +8 -13
- {scout_browser-4.89.2.dist-info → scout_browser-4.90.1.dist-info}/METADATA +1 -1
- {scout_browser-4.89.2.dist-info → scout_browser-4.90.1.dist-info}/RECORD +51 -50
- {scout_browser-4.89.2.dist-info → scout_browser-4.90.1.dist-info}/LICENSE +0 -0
- {scout_browser-4.89.2.dist-info → scout_browser-4.90.1.dist-info}/WHEEL +0 -0
- {scout_browser-4.89.2.dist-info → scout_browser-4.90.1.dist-info}/entry_points.txt +0 -0
- {scout_browser-4.89.2.dist-info → scout_browser-4.90.1.dist-info}/top_level.txt +0 -0
@@ -1,5 +1,5 @@
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scout/__init__.py,sha256=Z4liXvmEcLkC67ElsWvYHfemPKdWgWI5O6MB6XlDM8M,232
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scout/__version__.py,sha256=
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scout/__version__.py,sha256=HwaUgvr7vVd4G7ToKJp_i-XsLxlwHhzOtnwwakNIMs8,23
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scout/adapter/__init__.py,sha256=-iX_hx2NI1EMAqX0pMd5_90Nnd9uvIMxv9EbefYBzsc,86
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scout/adapter/client.py,sha256=IuajRsEwTG41ZP14X09Q1Cj94zIgmIvUtlXfcAFn0EA,1513
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scout/adapter/mongo/__init__.py,sha256=NdHYCUXWUAuX5cUS3-6HCws2hW9uoGep8i0SC-oJd3k,31
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@@ -20,9 +20,9 @@ scout/adapter/mongo/institute.py,sha256=GQmMKb_VzsvWwadp6gXHlSSpcG5ovF1ozdTzvpTF
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scout/adapter/mongo/managed_variant.py,sha256=YFdnIhNVIawVhmlOxHOpe6sJyso0FCGdlXOXyhSWol8,8373
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scout/adapter/mongo/matchmaker.py,sha256=amTvFOlUbrt1RmecY_8hPY6bO3j79lc2UbmzlCQcRuk,6378
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scout/adapter/mongo/omics_variant.py,sha256=VdkNG_l6vcr3UF25EixEfvIdMGkSGeNaMjLRhQHS_lc,7521
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scout/adapter/mongo/panel.py,sha256=
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scout/adapter/mongo/panel.py,sha256=XbV_oh9II89OLsWm2BWxiYKkxMGU4HGKuG-8L-drWbk,20018
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scout/adapter/mongo/phenomodel.py,sha256=cypSS8YRzu98Bf1kC0orfrLNn_ZQSYCK8e4mNR5PaPY,2572
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scout/adapter/mongo/query.py,sha256=
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scout/adapter/mongo/query.py,sha256=MzeMUND_BPHgJLGDEbOVgwf4ic8M9ZXFcyroQd0LMJQ,33314
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scout/adapter/mongo/rank_model.py,sha256=wvDNI4OLf-f7ZYZ_Q_6qi0myxOJCNNJR_-2-_0u2K2M,5712
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scout/adapter/mongo/transcript.py,sha256=3U1qtyxZ1DnrzdBJm_emJXISMYFKJuX_zAKynUt8NMY,7417
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scout/adapter/mongo/user.py,sha256=QoQnRWqi_dV3ZwGzBonEU6Ap9TgMDf2x_C5UIqG0pa0,2569
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@@ -37,7 +37,7 @@ scout/build/hpo.py,sha256=LJBCTq-x09D0CSKcUHB8a6ynuUrVh_7Ia0ooA1BxMys,1207
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scout/build/individual.py,sha256=a2L1NJF11oGaOU9LilWN5gftSyIRfk7H231mF2Y67WU,5232
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scout/build/institute.py,sha256=CZKn-cFbh0cWO2ySoRV_P1nYFizlyvu50LKrtAz-PLo,1330
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scout/build/managed_variant.py,sha256=krcQBc4LLxlnUQwXuV2FxNLiSkMoIkLxQueYFl04Vyo,1666
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scout/build/panel.py,sha256=
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scout/build/panel.py,sha256=rWtUqbYWVAMbtmm6qLKq69JiMzOaw4mGuzAx37Rtf3Q,4261
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scout/build/user.py,sha256=Df_k2H4CxR80yqmgVvl3u3YC9ikr33BLH5fGkxZ3Mlw,942
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scout/build/genes/__init__.py,sha256=AbpHGcgLb-kRsJGnwFEktk7uzpZOCcBY74-YBdrKVGs,1
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scout/build/genes/exon.py,sha256=a0oyW69x0tTImu4rxce5pU3Cb_GLSIdbexU0ex_OH7Q,2256
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@@ -124,21 +124,22 @@ scout/commands/view/intervals.py,sha256=8Pofxy0DwL2Euh3SdnTLLWsU6DjLNOwIGdxeCS83
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scout/commands/view/panels.py,sha256=a0fQcP9-SDPuRYV7aEgIGUCYaMN6V47h6finpcdoomU,1098
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scout/commands/view/transcripts.py,sha256=59WyNNp7zHPJIz9QgzrkoeKaSXTtuLli0VuL8IidEmY,1277
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scout/commands/view/users.py,sha256=MKlmhDYRM7Yf-Trmi1ijEuqsDIUn326bdFADyDs7XYg,832
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scout/constants/__init__.py,sha256=
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scout/constants/acmg.py,sha256=
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scout/constants/__init__.py,sha256=0pFfxITRK6MlBgSkincam0XeuH7O4AVt5mYxnfzfQ4g,5768
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scout/constants/acmg.py,sha256=YATAEJAzM_EkeG9meCFMavO8p9PS-RBCpqb4Seibuos,17557
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scout/constants/case_tags.py,sha256=wWtiSYVsRQiXml5m8-J1JsMUGKsv1smIszNleyc4Lgw,11119
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scout/constants/clinvar.py,sha256=nr7KhwMIO_7taNQokRJlpgZfenMlKsdPIMpdOx3TwKY,5594
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scout/constants/clnsig.py,sha256=2u_avIzWO_IPJGcTOoSB7_xqgu5JBl_zZZfT8UVpY90,1359
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scout/constants/disease_parsing.py,sha256=M9_OgsN88oXwKH_XpxdDma0zuWPRoHFQjL19tzojBPo,686
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scout/constants/file_types.py,sha256=3BU2cw40cHMT5IzEGEF_SsIhgYUbnIlUCRmwmB01fzI,3046
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scout/constants/filters.py,sha256=1bcj-z7__yv5eQpjB60wqSHZ3U5U0CVyNbcYT-Wn-vc,957
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scout/constants/gene_tags.py,sha256=
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scout/constants/gene_tags.py,sha256=qn2CMlvP-8c5TmWulAS8921MfCEXFWwjLNTs44-8TDw,3986
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scout/constants/igv_tracks.py,sha256=NbBBnM3s1S8cJM_S36qi7SU2ACW_lJVS6EP2W0kCTIQ,4697
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scout/constants/indexes.py,sha256=-rb5VP68Arl2t-bFDYWiQswAF3YxjrAJVuMtQWrT__8,5497
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scout/constants/panels.py,sha256=Ku-VwbVVOnBcxnbL4ThVBBcHY42XXg-ybTxNjJU7TZ4,437
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scout/constants/phenotype.py,sha256=MrbXirisR_7GPnxV3NOj3-BoM9CvtGgFZj7PfJu85RM,2331
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scout/constants/query_terms.py,sha256=
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scout/constants/query_terms.py,sha256=2A4CuTgc7W_VMj4atkJdZFfvBATu7OQg51udFM0rMOo,1574
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scout/constants/so_terms.py,sha256=aJcQv3wgpZylVhqSJH854WS8xSARDxWGnW6I5mG1egE,4321
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scout/constants/variant_tags.py,sha256=
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scout/constants/variant_tags.py,sha256=LxE_jTF5hk9M-lU7nAl1mdhpctatYwO91BLfVgN3qCQ,17919
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scout/constants/variants_export.py,sha256=ee3dyM6CifvPUU4zsVwYzG9Dptn3qBBhP72olHHJ6i4,1942
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scout/demo/643594.clinical.SV.vcf.gz,sha256=Y5CcTI7vJAS53ch8OHPR80X44rArHZoQeQZGl8AHmq0,11927
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scout/demo/643594.clinical.SV.vcf.gz.tbi,sha256=1CPB8ftoYF3gjRfqG0xMQlVMD1lY0xSdXp_KrJbfzac,1284
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scout/export/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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scout/export/exon.py,sha256=QpFvlKRQsWpQ2inKHAz_bk8ZjmoTFoc1_H_hUhWL8ZQ,3711
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scout/export/gene.py,sha256=6DTJuZUwbsBe3oyKhfov7ZmqM8DbShl5f1IAeZN736k,263
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scout/export/panel.py,sha256=
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scout/export/panel.py,sha256=IJlTYD5c8B1ys7L4h3p273cPE_5cgahbRcWDO8Nap6I,5316
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scout/export/transcript.py,sha256=wprCSxGDo2fittTd3IkIqUPnhFj4h4oSNFuyCO9Uyis,400
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scout/export/variant.py,sha256=sxe3-tnVs9cVRtK6I01oo9-hM0DBw0w1bGgvvv2FWUs,7358
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scout/load/__init__.py,sha256=d9cGZ9jMOfnmd9wkyspRFE2m5nxJt8MnpN-8PDlu-7M,212
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scout/parse/hgnc.py,sha256=92ro9ilOLi96AmlbXLItzDKPjJjgUd8iqzQbsy5AOeo,3250
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scout/parse/hpo_mappings.py,sha256=UJY38iLmpJFnZ9FuRaNIGhNQnTx7_WASxr9mlEnhvHE,2637
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scout/parse/matchmaker.py,sha256=eeAfyB8ObLIKveUL50i3YTBeZphqYhMCiz-4t2-dATI,9852
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scout/parse/mitodel.py,sha256=3uvEXI9v9wIw97NUL7gqLLxHay0mpQpDgKaIxUbIyrE,803
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scout/parse/omim.py,sha256=nrCaFZgjUKZo9Jfku2-jcNjdsIYHsvjdWcydz4nCpZA,12465
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scout/parse/panel.py,sha256=my6fm8wfZF_-EOQZHtXO6vedMoBuPIiZxbd7H4bsDEk,13191
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scout/parse/peddy.py,sha256=uM49GaZMtr8waCsZDvCHDS5JDQ43JUlhdWh9C7f7ZvU,5418
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scout/server/blueprints/alignviewers/__init__.py,sha256=XMVed2ekVUAvroqENDHSr2pwM8otqau8ZA-rbH1T2U8,59
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scout/server/blueprints/alignviewers/controllers.py,sha256=PumR2UMmJSAXoKZkyaPIVK83hcPSjXHXMrPfL-GKJ1s,14053
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scout/server/blueprints/alignviewers/partial.py,sha256=9hpI00yhvZZCcPVUHlVDp488r1j7vYU5YDXYA6OkWQM,2005
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scout/server/blueprints/alignviewers/views.py,sha256=Qa9VOPbqh2MC-L_x1Yp6n8hfr6mIm9EPIUdN_0itJRU,5092
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scout/server/blueprints/alignviewers/templates/alignviewers/igv_sashimi_viewer.html,sha256=37ArJCraTajqWlCvyQYVfSvWCg94pRDIMvf2Y7Oe_j4,5545
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scout/server/blueprints/cases/controllers.py,sha256=gDnjRYzc-z4SZro0Q7q8AQT0muyEUIfOY16hMaT-ZlE,53638
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