scout-browser 4.88__py3-none-any.whl → 4.89__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (60) hide show
  1. scout/__version__.py +1 -1
  2. scout/adapter/mongo/base.py +1 -1
  3. scout/adapter/mongo/case.py +185 -117
  4. scout/adapter/mongo/omics_variant.py +19 -0
  5. scout/build/case.py +1 -0
  6. scout/commands/load/variants.py +121 -40
  7. scout/commands/update/case.py +56 -10
  8. scout/constants/case_tags.py +5 -0
  9. scout/constants/disease_parsing.py +2 -2
  10. scout/constants/igv_tracks.py +2 -2
  11. scout/constants/indexes.py +8 -1
  12. scout/demo/643594.config.yaml +1 -0
  13. scout/demo/panel_1.txt +2 -0
  14. scout/demo/resources/ensembl_exons_37_reduced.txt +135 -0
  15. scout/demo/resources/ensembl_exons_38_reduced.txt +166 -0
  16. scout/demo/resources/ensembl_genes_37_reduced.txt +2 -0
  17. scout/demo/resources/ensembl_genes_38_reduced.txt +2 -0
  18. scout/demo/resources/ensembl_transcripts_37_reduced.txt +27 -0
  19. scout/demo/resources/ensembl_transcripts_38_reduced.txt +36 -0
  20. scout/demo/resources/hgnc_reduced_set.txt +2 -0
  21. scout/log/handlers.py +2 -1
  22. scout/log/log.py +48 -61
  23. scout/models/case/case_loading_models.py +2 -0
  24. scout/parse/omim.py +2 -2
  25. scout/server/app.py +23 -7
  26. scout/server/blueprints/alignviewers/controllers.py +46 -23
  27. scout/server/blueprints/alignviewers/templates/alignviewers/utils.html +1 -1
  28. scout/server/blueprints/cases/controllers.py +21 -47
  29. scout/server/blueprints/cases/templates/cases/case_report.html +4 -1
  30. scout/server/blueprints/cases/templates/cases/case_sma.html +19 -0
  31. scout/server/blueprints/cases/templates/cases/collapsible_actionbar.html +7 -7
  32. scout/server/blueprints/cases/templates/cases/individuals_table.html +1 -1
  33. scout/server/blueprints/clinvar/form.py +1 -1
  34. scout/server/blueprints/clinvar/templates/clinvar/clinvar_submissions.html +2 -2
  35. scout/server/blueprints/clinvar/templates/clinvar/multistep_add_variant.html +9 -3
  36. scout/server/blueprints/institutes/controllers.py +11 -38
  37. scout/server/blueprints/institutes/forms.py +18 -4
  38. scout/server/blueprints/institutes/templates/overview/cases.html +137 -46
  39. scout/server/blueprints/login/views.py +16 -12
  40. scout/server/blueprints/panels/controllers.py +4 -1
  41. scout/server/blueprints/panels/templates/panels/panel.html +1 -1
  42. scout/server/blueprints/panels/templates/panels/panels.html +5 -5
  43. scout/server/blueprints/public/templates/public/index.html +18 -10
  44. scout/server/blueprints/variant/templates/variant/components.html +0 -1
  45. scout/server/blueprints/variant/templates/variant/gene_disease_relations.html +1 -1
  46. scout/server/config.py +3 -0
  47. scout/server/extensions/__init__.py +2 -0
  48. scout/server/extensions/chanjo2_extension.py +46 -0
  49. scout/server/extensions/chanjo_extension.py +44 -1
  50. scout/server/extensions/matchmaker_extension.py +0 -1
  51. scout/server/links.py +11 -2
  52. scout/server/templates/report_base.html +1 -0
  53. scout/utils/convert.py +1 -1
  54. scout/utils/date.py +1 -1
  55. {scout_browser-4.88.dist-info → scout_browser-4.89.dist-info}/METADATA +1 -1
  56. {scout_browser-4.88.dist-info → scout_browser-4.89.dist-info}/RECORD +60 -59
  57. {scout_browser-4.88.dist-info → scout_browser-4.89.dist-info}/LICENSE +0 -0
  58. {scout_browser-4.88.dist-info → scout_browser-4.89.dist-info}/WHEEL +0 -0
  59. {scout_browser-4.88.dist-info → scout_browser-4.89.dist-info}/entry_points.txt +0 -0
  60. {scout_browser-4.88.dist-info → scout_browser-4.89.dist-info}/top_level.txt +0 -0
@@ -1,11 +1,11 @@
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  scout/__init__.py,sha256=Z4liXvmEcLkC67ElsWvYHfemPKdWgWI5O6MB6XlDM8M,232
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- scout/__version__.py,sha256=S_OcuSdVnX0Ttyr8B4f0ZjvymKdWNJRBY3w6OlW0NKo,21
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+ scout/__version__.py,sha256=uHM9R1HpJEivvV6bRxxdV4CnINQ5HpyCHvuWWIFpq9w,21
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  scout/adapter/__init__.py,sha256=-iX_hx2NI1EMAqX0pMd5_90Nnd9uvIMxv9EbefYBzsc,86
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  scout/adapter/client.py,sha256=IuajRsEwTG41ZP14X09Q1Cj94zIgmIvUtlXfcAFn0EA,1513
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  scout/adapter/mongo/__init__.py,sha256=NdHYCUXWUAuX5cUS3-6HCws2hW9uoGep8i0SC-oJd3k,31
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  scout/adapter/mongo/acmg.py,sha256=v2Zuw-6APVmcnBnNXa18WJEu2vj5GUhZNiKMkruJsBI,4170
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- scout/adapter/mongo/base.py,sha256=1vX2QYqbVRLrFijpmAb1ENe6jaF2Bs5owwYa7MhY0vM,4341
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- scout/adapter/mongo/case.py,sha256=jaPcGd6s9SWFux0Tv6DX608J1tV2VIU2fGtoNE8undw,60307
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+ scout/adapter/mongo/base.py,sha256=yiaEmybAjLiCdAKouT0TET9aM2U-PtQm3En52MHR7Zs,4340
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+ scout/adapter/mongo/case.py,sha256=HRm7KK7moV2V9lvnrFIqOWRt4FkX1a_Nhgdmlmn6zpU,64491
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  scout/adapter/mongo/case_events.py,sha256=slHR4XJF9vRuEbuInJKMMAImLF8m7tHWVfGP42fbXr0,26859
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  scout/adapter/mongo/clinvar.py,sha256=tczC39O3DFDkYgjt2RDgkkG-x1Mvx_99Hw7dAbIQ5gk,19838
@@ -19,7 +19,7 @@ scout/adapter/mongo/index.py,sha256=TZPVv6xBWsEtZpBUWp5uhjuPjQMfVss4lZZju49g1Lw,
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  scout/adapter/mongo/institute.py,sha256=GQmMKb_VzsvWwadp6gXHlSSpcG5ovF1ozdTzvpTFLpA,7025
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  scout/adapter/mongo/managed_variant.py,sha256=YFdnIhNVIawVhmlOxHOpe6sJyso0FCGdlXOXyhSWol8,8373
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  scout/adapter/mongo/matchmaker.py,sha256=amTvFOlUbrt1RmecY_8hPY6bO3j79lc2UbmzlCQcRuk,6378
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- scout/adapter/mongo/omics_variant.py,sha256=6VZOrq3VwNQnpXIcGs0zOvkhzHYwGJkzG1vFxwcnJu4,6938
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+ scout/adapter/mongo/omics_variant.py,sha256=VdkNG_l6vcr3UF25EixEfvIdMGkSGeNaMjLRhQHS_lc,7521
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  scout/adapter/mongo/panel.py,sha256=KRerlJzlm-NZRihDMJzOiD9ECYqqsEkXxkbcLADL0mI,20921
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  scout/adapter/mongo/phenomodel.py,sha256=cypSS8YRzu98Bf1kC0orfrLNn_ZQSYCK8e4mNR5PaPY,2572
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  scout/adapter/mongo/query.py,sha256=bifYuJ5oGYY17No2K8SvbnwCC__R585NaVRJ1oQIVsg,32964
@@ -31,7 +31,7 @@ scout/adapter/mongo/variant_events.py,sha256=LjUtxJLo3wGBjMI55wPs7sNPeDLq9POw6fg
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  scout/adapter/mongo/variant_loader.py,sha256=C05StRMFVChopcolPYXFIbh_S-FhYHu4NvBCpiBLOeE,28327
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  scout/build/__init__.py,sha256=GUWEaXTpwsJil_KtrXBQJpZIwCQFSgo8NlK49R9IkA8,521
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  scout/build/acmg.py,sha256=M21MrrP_dtEyOuu6t-jBDdaqYcHPMLcwJlt9fHG2ycE,1523
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- scout/build/case.py,sha256=wJR3d1n3GMhfQudhSRJM0tust84MuOpOvRcGfx7H6sI,11329
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+ scout/build/case.py,sha256=7Hry6ja0KvVhNQ1ecXy3HuaR7dY2x9O8f8FpYt4P6jo,11404
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  scout/build/disease.py,sha256=Zew9AF_z1NbbKcO3uJZ2wgni501SkfnYRgnaCZ4m8FY,2020
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  scout/build/hpo.py,sha256=LJBCTq-x09D0CSKcUHB8a6ynuUrVh_7Ia0ooA1BxMys,1207
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  scout/build/individual.py,sha256=a2L1NJF11oGaOU9LilWN5gftSyIRfk7H231mF2Y67WU,5232
@@ -92,12 +92,12 @@ scout/commands/load/region.py,sha256=psICLlMf5WBdSCgXsJZUsM8fICsTJB3Q6U6dB5S6w_8
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- scout/commands/load/variants.py,sha256=Sd9B8R1-04qH83gvXLe5jKXFGoRr9z8u1jAMwwnIg-Q,6442
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+ scout/commands/load/variants.py,sha256=MqghhgjpP9QiWlBIb-LogtPvBSl3kO2v3OWNlPLuB14,9355
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  scout/commands/setup/__init__.py,sha256=uiuizwirbfLqp93K4__b982obk1stkzwpvXHi51OAbE,31
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  scout/commands/setup/setup_scout.py,sha256=Pj4Xmm-NsTykPpUkKu_cxDS42rNZOWlEdVFcnaCxDO4,9254
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  scout/commands/update/__init__.py,sha256=yKNjRTVFsSTko8T7znfMqSI_HsGPN2-z1c0twkwO5uE,25
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- scout/commands/update/case.py,sha256=q7gjMS4izlrV0LghfTM9GiJeXI0K4qtmO62TqfTqizw,5822
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+ scout/commands/update/case.py,sha256=hDcgYc27-LOeXiilW5DLhAel2-uAaYvTdUUvGlgNInE,7301
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  scout/commands/update/compounds.py,sha256=vwCtb6045tGovKWHqY_uL8w1l9rZ_Hxlt0gUU0cKXUk,753
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  scout/commands/update/genes.py,sha256=GhYIn2zWrAZMhdJjzzrpo8AquFqr7XOvosOk8lg4Zwk,6989
@@ -126,15 +126,15 @@ scout/commands/view/transcripts.py,sha256=59WyNNp7zHPJIz9QgzrkoeKaSXTtuLli0VuL8I
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  scout/commands/view/users.py,sha256=MKlmhDYRM7Yf-Trmi1ijEuqsDIUn326bdFADyDs7XYg,832
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  scout/constants/__init__.py,sha256=phyLVKTDNqMKzWRaNvKqgdEZCOO1gc-2LbkCDwN6nhI,6901
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- scout/constants/case_tags.py,sha256=4_q-2nooD7A3VYkeKla6mHbUSsP1_HKlsEqg4FMER1g,10986
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+ scout/constants/case_tags.py,sha256=wWtiSYVsRQiXml5m8-J1JsMUGKsv1smIszNleyc4Lgw,11119
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  scout/constants/clinvar.py,sha256=nr7KhwMIO_7taNQokRJlpgZfenMlKsdPIMpdOx3TwKY,5594
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  scout/constants/clnsig.py,sha256=2u_avIzWO_IPJGcTOoSB7_xqgu5JBl_zZZfT8UVpY90,1359
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- scout/constants/disease_parsing.py,sha256=m10iPVzdTsdx7v9ZWvdLjlBrQKR_uyMeJwPbokO9SHY,688
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+ scout/constants/disease_parsing.py,sha256=M9_OgsN88oXwKH_XpxdDma0zuWPRoHFQjL19tzojBPo,686
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- scout/constants/igv_tracks.py,sha256=lrDPCkCjDrTDu80A8wuPjGm6zT_FBrDWv-g9nN_HCsI,4721
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- scout/constants/indexes.py,sha256=954b9H72rKI8qSSQbeQDjSl9gYBFGFq0Jd1mTH3Lkmk,5351
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+ scout/constants/igv_tracks.py,sha256=NbBBnM3s1S8cJM_S36qi7SU2ACW_lJVS6EP2W0kCTIQ,4697
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+ scout/constants/indexes.py,sha256=-rb5VP68Arl2t-bFDYWiQswAF3YxjrAJVuMtQWrT__8,5497
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@@ -154,7 +154,7 @@ scout/demo/643594.clinical.str.vcf.gz,sha256=ElvicUseKkN-DiZOQrFXstxy2jo9lhVMn58
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- scout/demo/643594.config.yaml,sha256=-6V9905gPYwFxNkxBKqqanTMrG1tbpMOH82udBz2HA0,5466
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+ scout/demo/643594.config.yaml,sha256=XHZPO9iIRFC2wOde1G82QdYXyynsBmb-nAn3mOZReG4,5519
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@@ -202,7 +202,7 @@ scout/demo/fusion_data.vcf,sha256=_-Zd4g4qvfG3SSWbGCtv_lwecYOUXy4cmBDDBeUUjAM,39
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- scout/demo/panel_1.txt,sha256=_3KG8KGhkOkjGNZ-7ygbN1wU1ewNAPcV4_aesACGigM,6145
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+ scout/demo/panel_1.txt,sha256=kIN2CGFaSGhJFfitLDF7Z7_NCL49WPxYjwmFyuMQyT4,6187
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@@ -333,17 +333,17 @@ scout/demo/mitodel_test_files/slowlycivilbuck_lanes_1_sorted_md_mitodel.txt,sha2
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+ scout/demo/resources/hgnc_reduced_set.txt,sha256=zAgNvQ4QWnxVzj6PYJ4MkkGFpZktl39nNZ5Dz00pXhM,124797
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@@ -375,8 +375,8 @@ scout/load/report.py,sha256=TJvblks6Dp5-UDflWRTa8b3fe-A4bT4QnWT2yZLhfLA,820
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- scout/log/handlers.py,sha256=nwcSeqwtcesiIiEnpVOm7vTugDTOBodP6apm9Z1LIqk,1350
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- scout/log/log.py,sha256=7zREYDleYk_dV2L8dcJHeJqOxcc7enqBobWGzElnSGA,1685
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+ scout/log/handlers.py,sha256=HBwcJkiBZxkiJYwacBMIuxuKaodo6nfjQeQokiVEa8s,1378
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+ scout/log/log.py,sha256=EPtd6Z1HMSvmuDHdElLUcLhPsz36LNQSX09Lg3m1jCY,1549
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  scout/models/clinvar.py,sha256=fTmQYV3yRxQn1JBOwKnovYmkl19H14HKRE2zY9JA93U,3102
@@ -392,7 +392,7 @@ scout/models/phenotype_term.py,sha256=jY7dbfPzgE14M1gWqifm5YKkwMlrtfFa_WBHMT1_og
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  scout/models/user.py,sha256=oercrjpf9fLomqAcN0Fv1BL_XPjOrS_vchURo0RP7es,1134
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- scout/models/case/case_loading_models.py,sha256=Xd7K5zgFOVLTK7NZboYK8JBvYJ6xUG-yLcWEgwGEnFY,21441
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+ scout/models/case/case_loading_models.py,sha256=n__1UVOKnaGnqytjAZhIuhfRyJcoiZTxDIeMtMPQkNw,21514
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  scout/models/variant/transcript.py,sha256=rfflEbTs7Bn4HDENqrxtGopQ_0HKnrVLLyBcrj4NpwM,1720
@@ -408,7 +408,7 @@ scout/parse/hpo_mappings.py,sha256=UJY38iLmpJFnZ9FuRaNIGhNQnTx7_WASxr9mlEnhvHE,2
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- scout/parse/omim.py,sha256=oFnf1CpEqX2imBvOla1A-3qM6vXpY4B_lc4cgiTSFXc,12464
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+ scout/parse/omim.py,sha256=nrCaFZgjUKZo9Jfku2-jcNjdsIYHsvjdWcydz4nCpZA,12465
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@@ -436,23 +436,23 @@ scout/resources/__init__.py,sha256=i9UVG651subgmOZ-Gm-JKPsXBqr5-50QUDfSpbwmwIw,4
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  scout/resources/cytoBand_hg19.txt.gz,sha256=pheUD5b9NlVuvwwnbKwDc2FG80Yg70gvPxVXP-Sqd3k,6147
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  scout/server/__init__.py,sha256=iwhKnzeBJLKxpRVjvzwiRE63_zNpIBfaKLITauVph-0,24
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- scout/server/app.py,sha256=q8A9CztBE5fSr3WG7F5PNvFlcTIw5bE_Yx5_jVAjMaQ,10503
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+ scout/server/app.py,sha256=70YdN9eWL1ySEYkuAHKOk_WA4Fm5dcIwtIZEcEf-xA0,10836
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  scout/server/auto.py,sha256=8B6GwfOaUChkTLuLgYQDFMWlxGuHkEegF1argH2G2Ik,401
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- scout/server/config.py,sha256=O2_9Wlbw8UsfjxKgRnuLSkhYTH5HptUjPHIF-bKIYdQ,5816
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- scout/server/links.py,sha256=WWHQ7CcJxemwR7Cm0n7CvZOfV0dG-_xEAfVff_m_x6U,27013
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+ scout/server/config.py,sha256=BFx6ix8D3KM90FqmaHLxv_feudO2kN2CkX1UWBGTjXE,5923
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+ scout/server/links.py,sha256=WjExw0fWrMDtZidSFklNWkRuiQMNzfaYP_x3uA19gAg,27379
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  scout/server/blueprints/alignviewers/__init__.py,sha256=XMVed2ekVUAvroqENDHSr2pwM8otqau8ZA-rbH1T2U8,59
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- scout/server/blueprints/alignviewers/controllers.py,sha256=Em4YNyQ-MoPFtP2H36KnGFEaNXcRZdUW60iRoqlRluY,12875
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+ scout/server/blueprints/alignviewers/controllers.py,sha256=PumR2UMmJSAXoKZkyaPIVK83hcPSjXHXMrPfL-GKJ1s,14053
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  scout/server/blueprints/alignviewers/partial.py,sha256=9hpI00yhvZZCcPVUHlVDp488r1j7vYU5YDXYA6OkWQM,2005
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  scout/server/blueprints/alignviewers/views.py,sha256=yQmWqzjdYmqs4e2nzDPLNjgpsNzKhBv1LJGaJi8bnyc,4963
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  scout/server/blueprints/alignviewers/templates/alignviewers/igv_sashimi_viewer.html,sha256=37ArJCraTajqWlCvyQYVfSvWCg94pRDIMvf2Y7Oe_j4,5545
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- scout/server/blueprints/alignviewers/templates/alignviewers/utils.html,sha256=1AhvT-D-dpGvI5MAK6UvK7tkSRi0ybb4mTKD1sTKKQU,336
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+ scout/server/blueprints/alignviewers/templates/alignviewers/utils.html,sha256=hnyQifeqxIQ2vNAPs9OgjAuQfcVrPe46C23RUJJFHXA,336
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  scout/server/blueprints/api/__init__.py,sha256=HR6HjS7ot1K_8Lt5eQdNT154z_FCdHGSigy8r2LpNCI,26
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  scout/server/blueprints/api/views.py,sha256=pbl78wfhrm1T8JmiJDYF3BbTbfFrlF-hQRbuv2GWI0s,3729
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- scout/server/blueprints/cases/controllers.py,sha256=pG-IHAKqGpqCwcgsRj77k5NJye6T3xUXhgmn0TIT9H8,54811
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+ scout/server/blueprints/cases/controllers.py,sha256=Fz5nq3h0sO8Xvzm59GsjipKD7vOGjN_GrW8vXu7Pn6E,53515
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  scout/server/blueprints/cases/views.py,sha256=ZfuDfkcOiw7PHUr68mowJyYxUb6_gQObR488mhP6l78,42841
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  scout/server/blueprints/cases/static/case_images.js,sha256=pb_gG7DNQc-1lADqSII8YvjBwmHyeQWYVtuu2jyrTlU,14997
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  scout/server/blueprints/cases/static/case_styles.css,sha256=2Pgc8pFf9DR5HM1sTdAjaRWhjL-bK5bsQnLpH54HZak,541
@@ -460,27 +460,27 @@ scout/server/blueprints/cases/static/edit_pedigree.js,sha256=ntC5fie7SsOYJau8qkk
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  scout/server/blueprints/cases/static/madeline.js,sha256=KHxKMBVlYVJODNu5QkY9hhsGkDJNoaCoCZZ0DRu0YN0,1175
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  scout/server/blueprints/cases/templates/cases/case.html,sha256=9Fcn-OFA1yIHchD0PjDs7-Y8I7Qqr8o6cavN0eOi5rI,37183
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  scout/server/blueprints/cases/templates/cases/case_bionano.html,sha256=PLoRv7hDJcHwxhi-0hC9fQSZc7V_aUYHBhhQqcn_2G8,5946
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- scout/server/blueprints/cases/templates/cases/case_report.html,sha256=5vGSFpFdZN_mwNs-WDJHbsXimDiEE9EJkzXHoh1lEVU,62822
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- scout/server/blueprints/cases/templates/cases/case_sma.html,sha256=SAcElb4kH05mkPdEdaEbed-vbgQQGfxioCoNZsHljDc,4962
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+ scout/server/blueprints/cases/templates/cases/case_report.html,sha256=CzOIec3hbCXCwIQpB0L0vGQPtYvQjJbJXcir61jUM2Q,63091
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+ scout/server/blueprints/cases/templates/cases/case_sma.html,sha256=5kpvNPhOO15wTP_WjYX22wQ_B5-pw4jIQweNXYLbsAU,6281
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  scout/server/blueprints/cases/templates/cases/case_tabular_view.html,sha256=ko-LDUKmIoTazMZ2nFWvPEZsgObU07RwqIkDYFjokoY,4317
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  scout/server/blueprints/cases/templates/cases/chanjo2_form.html,sha256=5Wmk7DM8LI3MynqzxeTzAr_EoEBwVVo31djcI5ZlTdo,2164
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- scout/server/blueprints/cases/templates/cases/collapsible_actionbar.html,sha256=6xWkg0sc1BLQJZXiK-gohVQhUrdwITQ0yWsF61b29qc,29274
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+ scout/server/blueprints/cases/templates/cases/collapsible_actionbar.html,sha256=QyEncsGLRJu0kgkDLvXGSzUwODJQrbE0o3q3ejSBUXY,29260
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  scout/server/blueprints/cases/templates/cases/diseases.html,sha256=ETTQI0Nrl_v86NoX9mFZcvWD-qM1IJoqPmHPWn__Grw,1677
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  scout/server/blueprints/cases/templates/cases/gene_panel.html,sha256=lkC_Piqaq-paYr4GUCwQaR8EgGOUXDMoW5sPLDW7yzg,11628
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  scout/server/blueprints/cases/templates/cases/index.html,sha256=oUmjFyUvwP4yo21CxcWy-6eepMFI65hpznMEpSEqKfM,1207
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- scout/server/blueprints/cases/templates/cases/individuals_table.html,sha256=DXE7gE0f81B5CxCV1e5bqWv27_HS-9-8nc0pcFkMoOg,11497
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+ scout/server/blueprints/cases/templates/cases/individuals_table.html,sha256=wjcrPMYXZGRWxM0GzHwbLmsOPWtmke9p2T22ngCBMyU,11460
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  scout/server/blueprints/cases/templates/cases/institutes_sidebar.html,sha256=u0oPGHJ0ipZ1LkjHkbwlWfkUWc1h6XH1nh3tkbX17z0,4546
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  scout/server/blueprints/cases/templates/cases/matchmaker.html,sha256=1vwGBhM4HgvRMlO1foKBAwV-Wfvfs1MRvzteOETCZeM,13142
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  scout/server/blueprints/cases/templates/cases/phenotype.html,sha256=7vz5XPUExD6vc-wdijLKnPzaOFm9mQxOZ_ITAL3y7U8,16420
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  scout/server/blueprints/cases/templates/cases/utils.html,sha256=gHcxf3DOGcJJZMfjKY4NgvU_tjta5OnyWrKZy9pfGyY,35981
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  scout/server/blueprints/clinvar/__init__.py,sha256=BV3aH2AbiA2WWrUEMbGd0H9MefFd2eTsRE9ShywbzpI,30
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  scout/server/blueprints/clinvar/controllers.py,sha256=EZv6cwmg2pYwLFq5SPskrARrjjf3Az7GN23lcZn52vg,24254
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- scout/server/blueprints/clinvar/form.py,sha256=d0EBJouYsk-kIpGtAr_SfNCyLoBNchfLt25uFR9HxO0,5155
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+ scout/server/blueprints/clinvar/form.py,sha256=2h42YJzaOtsdEglxqt7F1i2ncjSU_IHNt-m4QOJytK4,5148
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  scout/server/blueprints/clinvar/views.py,sha256=hPyTJA7Qy6QOL-ENSG1N0atnQXuYCb-iiO8fuNDjJns,6036
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  scout/server/blueprints/clinvar/templates/clinvar/clinvar_howto.html,sha256=phFsRl6Hv94sy4GueBN0MXYbQsW6qmR1NoH-3Iwt2zs,4852
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- scout/server/blueprints/clinvar/templates/clinvar/clinvar_submissions.html,sha256=4PPiOSXszJy-yqjhideoWhQ2SwRZ9o66yL7slUHqeeM,18241
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- scout/server/blueprints/clinvar/templates/clinvar/multistep_add_variant.html,sha256=z6OQ3uEOtkFQAltPYg3Vn8E7__WvK-vc4LOFLYZ7YUM,31623
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+ scout/server/blueprints/clinvar/templates/clinvar/clinvar_submissions.html,sha256=fNIglI_Bs04wp0YnD5E8hXQTWvukyaH2PQnOIzbXV6w,18229
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+ scout/server/blueprints/clinvar/templates/clinvar/multistep_add_variant.html,sha256=dBrIRJLcbW0bI2n2QoeZLgr91S8kJmzHYFVnDgUkP24,31987
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  scout/server/blueprints/dashboard/__init__.py,sha256=9YTjGeFexyEbl4P-gs7j8VEjyhnVwHZFfz57eTtod1M,69
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  scout/server/blueprints/dashboard/controllers.py,sha256=c0oOVzyHmQEypQPGRr8Kh_QdKidMjwqPd9UF1_kFLIk,10698
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  scout/server/blueprints/dashboard/forms.py,sha256=CgwCHGZcxi08-04hwlw-rXZau_C9X2Qoq1ayTd533qY,826
@@ -500,14 +500,14 @@ scout/server/blueprints/genes/templates/genes/gene.html,sha256=X1WR-sHYGnWyhQfgN
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  scout/server/blueprints/genes/templates/genes/genes.html,sha256=x6jXKijvuEX9GvIedHW4O_BerYXiWEmAdYT0HTiGnhI,1130
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  scout/server/blueprints/institutes/__init__.py,sha256=kGSyYrBC1QaEQBDdoMkMLfaowV7roaV5DowICi_0RSQ,65
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- scout/server/blueprints/institutes/controllers.py,sha256=vVzqjsa6DT_FJgqwRujdZVTe0tclWXNhe5xXjX5zvnE,32444
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- scout/server/blueprints/institutes/forms.py,sha256=2zgsgY54pyRtwpAL138ueaUgLOcBfDaq8zDBo3sPCik,5769
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+ scout/server/blueprints/institutes/controllers.py,sha256=eaqx8OKOqFTS-2gwzhS5gY_PERghxTazT6Stj-FmN1I,31652
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+ scout/server/blueprints/institutes/forms.py,sha256=BkiCyhrj9uSoQA85ehx7neAehg4odvT1ie0KxJ6vf0Y,6732
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  scout/server/blueprints/institutes/views.py,sha256=Bx_hQm4oL12OaljiTogG3CnrkGYczsUzRfDckwBJhmU,8621
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  scout/server/blueprints/institutes/static/select2_darktheme.css,sha256=Nq_va597W_e5y-52B4ClwSJzACq0WFbPU8SIp3DtKIo,1818
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  scout/server/blueprints/institutes/static/variants_list_scripts.js,sha256=gO_ZuJC2jj7Y9x6CEVEVhN1oIE4bIWrTY0_zVcsbRbY,236
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- scout/server/blueprints/institutes/templates/overview/cases.html,sha256=DU9I1CUMzIRw8Y7ACydWV2LUMR2R2NCTTlAscQYAl4g,14670
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+ scout/server/blueprints/institutes/templates/overview/cases.html,sha256=ej7HZMT3pwzjymO7B3QoK6QUqsPd6qhRv_fFzdTBMgw,19635
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  scout/server/blueprints/institutes/templates/overview/causatives.html,sha256=KHCPIshkenOjIVWkG9usfLqkORChonGdOiIRw0h1oj0,1593
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  scout/server/blueprints/institutes/templates/overview/filters.html,sha256=Dzu5YicmdjW_zGqbCUrb8TMbSUuRaG47itTMwwX7Bm8,3102
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  scout/server/blueprints/institutes/templates/overview/gene_variants.html,sha256=LpI-uBXP5eoOMrLyrIeCwVKTrzF-7sD8FESZptvFmOw,8571
@@ -520,7 +520,7 @@ scout/server/blueprints/institutes/templates/overview/verified.html,sha256=NvjGw
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  scout/server/blueprints/login/__init__.py,sha256=uDzQjNNrMloZ4-i-1cEW7d59FZ--Xy89b-Xn5SvyC1U,52
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  scout/server/blueprints/login/controllers.py,sha256=bg0me00OvwYJiTm4dZnbl8eyRRRDquBMs5U7_YV4xWI,1883
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  scout/server/blueprints/login/models.py,sha256=w0ELh33rX1zwEnzZE-nhaoB6Z1JfgWxzWJ43JFJJo4s,688
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- scout/server/blueprints/login/views.py,sha256=nQCr3vol2vBEv--AGRQkLNzxp78rcNv-zwEVRicNFRQ,4169
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+ scout/server/blueprints/login/views.py,sha256=0fAH91TAeO9h_ufLiUXjtzh5G21ODqi_OOPErmAJSQ8,4437
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  scout/server/blueprints/login/static/commander.svg,sha256=qXfFTyAE0myoOxJ8d1xb138APPllUOYxXE1Dp66Bz0o,195476
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  scout/server/blueprints/login/static/commissioner.svg,sha256=kAMMtiUauuKKKwYYVhjI8BOjiFoVLZWtj3zcmdwbVzg,415421
@@ -540,14 +540,14 @@ scout/server/blueprints/omics_variants/controllers.py,sha256=AnM70stvLniJIU3pFUX
540
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  scout/server/blueprints/omics_variants/views.py,sha256=4_wOqAhu_Zl6heqm7ilE8y8xOfy3PU532rkp_H0KZFg,3724
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  scout/server/blueprints/omics_variants/templates/omics_variants/outliers.html,sha256=E9FhdrYQuLYbB9sk9ct89cWVmbetZFJDCQTqVxWdVrM,13274
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  scout/server/blueprints/panels/__init__.py,sha256=usxBF0O7zNX1d9jt-8DRoFZwcfHHS96Gv87LDr1AgG4,53
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- scout/server/blueprints/panels/controllers.py,sha256=apNwdE8gphRTViChoL_yfBJP-H1BfpyAyrIJMv88d9c,12659
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+ scout/server/blueprints/panels/controllers.py,sha256=PKNN0JpxkvmLD1qHXGHWAjSjW9t_WfGWIrYACWmwMVo,12744
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  scout/server/blueprints/panels/forms.py,sha256=DYlhYpnpv7ehf9JlY3HRFwy-TZ5QDHB0RIRaNTAW1jQ,696
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  scout/server/blueprints/panels/views.py,sha256=pkrAqoIfOr2kh3Kb5f1HdHQnLSMwLGFiLgja_eInTdM,15688
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  scout/server/blueprints/panels/templates/panels/gene-edit.html,sha256=ZuXxdvjioxHlC0mz54t4q2KBFvP2qXb5VpNIcMVayVM,3649
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- scout/server/blueprints/panels/templates/panels/panel.html,sha256=TxFAMRWQfveftJ4wxXJ_swxzq3GeIzwWegnoICQvJTk,15468
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+ scout/server/blueprints/panels/templates/panels/panel.html,sha256=qV83Ez6pD2CPJkSOtPTXqS8Czk9uJjj01MR_VhfgcMc,15560
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  scout/server/blueprints/panels/templates/panels/panel_pdf_case_hits.html,sha256=uzfZJiMNQiTa_6u4uMuIbK3VXIs-8Rw-MjKujFttZG8,3438
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  scout/server/blueprints/panels/templates/panels/panel_pdf_simple.html,sha256=6fcuiYcm_Gjh0klgQ9AfbpYUJAQrXm0YPAjFwrtmLHs,2677
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- scout/server/blueprints/panels/templates/panels/panels.html,sha256=aRv4ckNsHZZO7w17fnvJbJrmXi1mrAMtEZTGvfhwygU,13978
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+ scout/server/blueprints/panels/templates/panels/panels.html,sha256=zjVzfgsapjlZBZ8Kz2zRz0oShg1msXTkkoENy9jF4Tc,14038
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  scout/server/blueprints/phenomodels/__init__.py,sha256=Kb1fqfCn-QsH5mz6hiuQ2DiC7icTClD4HLey6QN4GD4,34
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  scout/server/blueprints/phenomodels/controllers.py,sha256=g5-BxlaHN7JBuQHEcOtQMUDEO9U9iy9HICaIaIEn3vk,11019
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  scout/server/blueprints/phenomodels/forms.py,sha256=Z7dMIJml5xZ1cQV1jh_-IGVxhxk4lVhcUTvFa6ArbJo,740
@@ -594,7 +594,7 @@ scout/server/blueprints/public/static/ideograms/chromosome-9.png,sha256=FJFQT6T3
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  scout/server/blueprints/public/static/ideograms/chromosome-M.png,sha256=xY53NbeYm1vWNf4crp3NRePb7tJGQriXe80Re8PicUs,12698
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  scout/server/blueprints/public/static/ideograms/chromosome-X.png,sha256=Dj7npcW_hhB7_W5Un_Eg3VLUyyUGe0-ZU9HL3nwfbJ0,1646
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  scout/server/blueprints/public/static/ideograms/chromosome-Y.png,sha256=KlOsBLZYFVHRvXvTioT-XE57zSWoYeIwIEXo_rzLBR0,1524
597
- scout/server/blueprints/public/templates/public/index.html,sha256=kl_-1s4HXRGw_PWacRFHG3cHALBBMN54GJVBnAAZ7LE,3626
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+ scout/server/blueprints/public/templates/public/index.html,sha256=-c6-r2G6-cdE9PLV126V8zTwYmApI88UIQKWuVP6HP4,4268
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  scout/server/blueprints/variant/__init__.py,sha256=SlD8-Aoj9Jq9aVTJjtFfsu-0sUVfkzpiEXcH8z9q6dI,54
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  scout/server/blueprints/variant/controllers.py,sha256=2XEBrvq4kXNA2Mj1G6GMfWHphEfgafDewoqFW32Q0PQ,25160
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  scout/server/blueprints/variant/utils.py,sha256=MCz_CPH10eOS-WYvEmJaNXxsJMzav822zTvfiQnBx8U,23045
@@ -603,8 +603,8 @@ scout/server/blueprints/variant/views.py,sha256=jz5kFRCLhEVRQKFJtKmG0Nq4TX6ofEey
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  scout/server/blueprints/variant/templates/variant/acmg.html,sha256=ubitRnQoADLLOptwMgsPLb1AXhwZgV1YlN504VaC2lY,7754
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  scout/server/blueprints/variant/templates/variant/buttons.html,sha256=SnSQhCYiW3lYuZrT22J27OtDaxiVCfWpueOr4jQBOg0,7257
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  scout/server/blueprints/variant/templates/variant/cancer-variant.html,sha256=1D9uLIgb06qfhcbl0wB5mRrgARVgfCJfRZhf4wEA2tc,13971
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- scout/server/blueprints/variant/templates/variant/components.html,sha256=hDxXLJkHDTwHApugNcvZkorUR0x10xnFMl256p2DCKA,20850
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- scout/server/blueprints/variant/templates/variant/gene_disease_relations.html,sha256=mvw7773Gww3AAOtASL61W5e5cYTc4uB8gJ2zr19NIXw,7283
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+ scout/server/blueprints/variant/templates/variant/components.html,sha256=9XBrMqI3yAJ8iC3ytohTatWnuIXMPdGr3HWIFgMA4_U,20691
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+ scout/server/blueprints/variant/templates/variant/gene_disease_relations.html,sha256=9AxW5QE1eZl6c7chNGyJ919kuwV96Du06_2qYwWhm4s,7353
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  scout/server/blueprints/variant/templates/variant/rank_score_results.html,sha256=32RfBrpZ_J-1WYE01Bdd5IC9i1MAzXT7GF27OlElk94,2040
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  scout/server/blueprints/variant/templates/variant/sanger.html,sha256=0kVnscTw3KUwjR4QOEuNJMOK9eADGEn9qGNtGx2ST7Y,4507
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  scout/server/blueprints/variant/templates/variant/str-variant-reviewer.html,sha256=QETzTkzXhFBd7-20OrLMCd1QSgzOxeE7Lv_Iged5BB0,2220
@@ -629,15 +629,16 @@ scout/server/blueprints/variants/templates/variants/str-variants.html,sha256=sMM
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  scout/server/blueprints/variants/templates/variants/sv-variants.html,sha256=SgAdgIPdr7pd2TDB2PJlXOmSAjX4WUslfm4eu0cjIBI,6310
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  scout/server/blueprints/variants/templates/variants/utils.html,sha256=hK1BBqxvSljBLAGA8mZlEn1RUSXaJQcB-SB_jQviV3E,49371
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  scout/server/blueprints/variants/templates/variants/variants.html,sha256=nfSZXVGmsjjUuRC-54G9UsNBMhlNjnvBafN34uL73tY,9333
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- scout/server/extensions/__init__.py,sha256=tBhPKg0qc0HuZckWgj3UGexhmA7KQ-hlC50DqWx4UT4,1220
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+ scout/server/extensions/__init__.py,sha256=b8BuGfdRWoZXcs_q4Wn9vf30jj5r2GU-YJBpPgAv_nM,1291
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  scout/server/extensions/beacon_extension.py,sha256=YDXQQl5kFcsA4OFHDMVurIKLw_3Gl6yWfcy3lYHl9RE,9904
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  scout/server/extensions/bionano_extension.py,sha256=0rWPLMSCRP8uK4_yozo6HTPR6V-oITF492vrGA3wSj0,7129
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- scout/server/extensions/chanjo_extension.py,sha256=MEV8l-83yujOw6JK_qc3VILND3S60zZrK-CCrLYRQUQ,2281
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+ scout/server/extensions/chanjo2_extension.py,sha256=ZKCIv8muR9bzCV0_rM277ePvxdWC3wuPIwY4VppH7lY,1530
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+ scout/server/extensions/chanjo_extension.py,sha256=JtKAgT6ASnCcKYbgKMWGwflISLzHuyDKpcyljzCV_aY,4045
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  scout/server/extensions/clinvar_extension.py,sha256=w1fOzGKRhxmIlZkAqqd_rdGD49qE_nn-tgZsEMTrZNw,3870
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  scout/server/extensions/gens_extension.py,sha256=KOF-pP4DiRVQkygthAq6XCHnZwAGHo1kjIxmvW7ItYI,1003
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  scout/server/extensions/ldap_extension.py,sha256=nVgJ6YhSyvpg8J4bSYzJwoEvKhP0faWazt3Xk0ixE2U,2746
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  scout/server/extensions/loqus_extension.py,sha256=uiqUXQ7Q7DCj6C20TKgL8yLu9DXov95vrJfhq0tvbTM,12602
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- scout/server/extensions/matchmaker_extension.py,sha256=m-ecpdaVL8AlRbv2WZ2sGkvNNL0ujuxA3X-xunYBLdA,5036
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+ scout/server/extensions/matchmaker_extension.py,sha256=mNytCYnZX1hgdq1otkvnyOkh4dj9SVgQthJAfKb8TMI,5024
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  scout/server/extensions/mongo_extension.py,sha256=bKB0K5ibp-BWynOTgzBJd5qIYO0S9zRtEyDUw7EoxSQ,1029
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  scout/server/extensions/phenopacket_extension.py,sha256=kcEUIOSfkQAlAmUm07hQS1BeUjeN4lBc-InvaNtbFxo,7295
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  scout/server/extensions/rerunner_extension.py,sha256=SEwQi5BZR5X70BoD0U7TfyGgGv2WbJbas0v1efuv_r8,1104
@@ -648,7 +649,7 @@ scout/server/static/humans.txt,sha256=UdqAR07_5LAWWfgH2Ty4RR8BhoHS1WXpx9euKtXqqh
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  scout/server/static/robots.txt,sha256=fFX0beQN4x3mzR3evnZjrOUYOTNkezYAwqMowTUpmxM,106
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  scout/server/templates/bootstrap_global.html,sha256=yPauZKUzPvDCj6LUrKnCtkYgn7fPt07-Letxqd-hLw8,2634
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  scout/server/templates/layout.html,sha256=-uhRxFA89L0gocv8sPLcODUHmWLNuV6xsjB34Zjq-8o,4635
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- scout/server/templates/report_base.html,sha256=PZOqFZRLtbe4PZ7lkVc9LP1O-yh7v3_EzOohRE9Ix4U,1252
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+ scout/server/templates/report_base.html,sha256=uRSpk-KaE7ZCE0UOGftWH0bGDQVUTU1bpcVKnDKitq0,1335
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  scout/server/templates/utils.html,sha256=Wd-glkGqmfJeusnqi1fIjCBSgUflWh0V3MOAnr5V_MU,13000
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  scout/server/translations/sv/LC_MESSAGES/messages.mo,sha256=eI53pCtlYj1MXduDicMZRxBhgOV_TlmMUpH7IhncgDY,4452
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  scout/server/translations/sv/LC_MESSAGES/messages.po,sha256=Wp7Mx4LoiFNtzsV1tpAoWjMxYnq8SpfpU9a4XWJ7L6g,4531
@@ -657,9 +658,9 @@ scout/update/panel.py,sha256=4z-vQ7GVIJXtlIub9pubFcQ-I9mLX5fRXKNPBdpuhJw,1649
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  scout/utils/__init__.py,sha256=DHCMH05dxkyD7m9QSs0WXsQQPgVRFQ9XvyNeNpHjjvg,74
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  scout/utils/acmg.py,sha256=xIxOXdzklrBeCCk6lUCqWMjzu5Hj3qmlYO7O5RUY6WA,7609
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  scout/utils/algorithms.py,sha256=w--NauXbQohZis7obr39a8bS57C4NRelYXn79V7m1dU,800
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- scout/utils/convert.py,sha256=BUt3lYKXdje9GGOvyZuI-SPhBOp_eJtYz1gfUgBY_Z8,1792
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+ scout/utils/convert.py,sha256=asrsis3zkt9jXzseRmCqSa4_t1UT73HPPQRW-DKDdqE,1794
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  scout/utils/coordinates.py,sha256=n8WUFn9zohXfjxgFGryyg6mzdl0zBG8uVCdyjhizSpM,609
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- scout/utils/date.py,sha256=PT5iNB02rJF4aya8Kd8d6JWagyyhO59GBu2T6EQ6pT0,1333
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+ scout/utils/date.py,sha256=GUALqEIgWtbopqC9wJnVKmVm5FRq111iz4RfojUIfG0,1334
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  scout/utils/dict_utils.py,sha256=nstAbMYQD2KNglY69FD0qSfxYM26eM4QDpp_AqHNQ1U,251
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  scout/utils/ensembl_biomart_clients.py,sha256=szth3hpjYYan49URkOxPMp361LgOlv_hr5dsqxJjZDA,1569
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  scout/utils/ensembl_rest_clients.py,sha256=of6CXQHBnwH4ji5URAZcEqVTebxduLs13lBWv2QTIM4,3039
@@ -671,9 +672,9 @@ scout/utils/md5.py,sha256=KkgdxOf7xbF9AF40ZjQKCgWaxFWJ9tp9RKjd8SU6IoA,649
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  scout/utils/scout_requests.py,sha256=JjHOJW1XmenG05mNQ33kvOKq_IicveIfQMcPZeRcQdo,12856
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  scout/utils/sort.py,sha256=1AcbeZ6vdt_UXM3BLDBa3aQmN4qxrqtskxwD19oBhvw,756
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  scout/utils/track_resources.py,sha256=eUjSEe-Ff8BIb4BHPC_COkJocQO2PaWueiPz1GAuiwY,2614
674
- scout_browser-4.88.dist-info/LICENSE,sha256=TM1Y9Cqbwk55JVfxD-_bpGLtZQAeN9RovQlqHK6eOTY,1485
675
- scout_browser-4.88.dist-info/METADATA,sha256=BjcwhCYLPRAApIAEFM5xImwK7VtYpfKusrs6E9u73nw,14260
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- scout_browser-4.88.dist-info/WHEEL,sha256=eOLhNAGa2EW3wWl_TU484h7q1UNgy0JXjjoqKoxAAQc,92
677
- scout_browser-4.88.dist-info/entry_points.txt,sha256=q_mxFwbMFTwXRDDIRVcqKram2ubMVmvs3CSNvZri1nY,45
678
- scout_browser-4.88.dist-info/top_level.txt,sha256=qM75h71bztMaLYsxn1up4c_n2rjc_ZnyaW6Q0K5uOXc,6
679
- scout_browser-4.88.dist-info/RECORD,,
675
+ scout_browser-4.89.dist-info/LICENSE,sha256=TM1Y9Cqbwk55JVfxD-_bpGLtZQAeN9RovQlqHK6eOTY,1485
676
+ scout_browser-4.89.dist-info/METADATA,sha256=N51ZBLfSeqt_rWMckEQocMR34WNvAEXjE8FFyDq321M,14260
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+ scout_browser-4.89.dist-info/WHEEL,sha256=eOLhNAGa2EW3wWl_TU484h7q1UNgy0JXjjoqKoxAAQc,92
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+ scout_browser-4.89.dist-info/entry_points.txt,sha256=q_mxFwbMFTwXRDDIRVcqKram2ubMVmvs3CSNvZri1nY,45
679
+ scout_browser-4.89.dist-info/top_level.txt,sha256=qM75h71bztMaLYsxn1up4c_n2rjc_ZnyaW6Q0K5uOXc,6
680
+ scout_browser-4.89.dist-info/RECORD,,