scout-browser 4.85__py3-none-any.whl → 4.86__py3-none-any.whl

scout/server/extensions/clinvar_extension.py

@@ -4,7 +4,7 @@ import logging
 import requests
 from flask import flash
 
-from scout.constants.clinvar import CLINVAR_API_URL, PRECLINVAR_URL
+from scout.constants.clinvar import CLINVAR_API_URL_DEFAULT, PRECLINVAR_URL
 
 LOG = logging.getLogger(__name__)
 
@@ -15,9 +15,9 @@ class ClinVarApi:
     the ClinVar submission schema (https://www.ncbi.nlm.nih.gov/clinvar/docs/api_http/) and if valid, can be directly submitted to ClinVar.
     """
 
-    def __init__(self):
+    def init_app(self, app):
         self.convert_service = "/".join([PRECLINVAR_URL, "csv_2_json"])
-        self.submit_service = CLINVAR_API_URL
+        self.submit_service_url = app.config.get("CLINVAR_API_URL") or CLINVAR_API_URL_DEFAULT
 
     def set_header(self, api_key) -> dict:
         """Creates a header to be submitted a in a POST rquest to the CLinVar API
@@ -71,16 +71,16 @@ class ClinVarApi:
             "actions": [{"type": "AddData", "targetDb": "clinvar", "data": {"content": json_data}}]
         }
         try:
-            resp = requests.post(self.submit_service, data=json.dumps(data), headers=header)
-            return resp.status_code, resp
+            resp = requests.post(self.submit_service_url, data=json.dumps(data), headers=header)
+            return self.submit_service_url, resp.status_code, resp
 
         except Exception as ex:
-            return None, ex
+            return self.submit_service_url, None, ex
 
     def show_submission_status(self, submission_id: str, api_key=None):
         """Retrieve the status of a ClinVar submission using the https://submit.ncbi.nlm.nih.gov/api/v1/submissions/SUBnnnnnn/actions/ endpoint."""
 
         header: dict = self.set_header(api_key)
-        actions_url = f"{CLINVAR_API_URL}{submission_id}/actions/"
+        actions_url = f"{self.submit_service_url}{submission_id}/actions/"
         actions_resp: requests.models.Response = requests.get(actions_url, headers=header)
         flash(f"Response from ClinVar: {actions_resp.json()}", "primary")

scout/server/links.py

@@ -563,9 +563,9 @@ def decipher_link(variant_obj, build=37):
 def exac_link(variant_obj):
     """Compose link to ExAC website for a variant position."""
     url_template = (
-        "https://exac.broadinstitute.org/variant/"
+        "https://gnomad.broadinstitute.org/variant/"
         "{this[chromosome]}-{this[position]}-{this[reference]}"
-        "-{this[alternative]}"
+        "-{this[alternative]}?dataset=exac"
     )
     return url_template.format(this=variant_obj)
 

scout/server/templates/bootstrap_global.html

@@ -10,16 +10,13 @@
 
 	{% block css %}
     <link rel="stylesheet" href="https://cdn.jsdelivr.net/npm/bootstrap-dark-5@1.1.3/dist/css/bootstrap-dark.min.css" integrity="sha384-pZAJcuaxKZEGkzXV5bYqUcSwBfMZPdQS/+JXdYOu9ScyZJMnGHD5Xi6HVHfZuULH" crossorigin="anonymous">
-    <link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.15.4/css/all.min.css" integrity="sha512-1ycn6IcaQQ40/MKBW2W4Rhis/DbILU74C1vSrLJxCq57o941Ym01SwNsOMqvEBFlcgUa6xLiPY/NS5R+E6ztJQ==" crossorigin="anonymous" referrerpolicy="no-referrer" />
+    <link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/6.6.0/css/all.min.css" integrity="sha512-Kc323vGBEqzTmouAECnVceyQqyqdsSiqLQISBL29aUW4U/M7pSPA/gEUZQqv1cwx4OnYxTxve5UMg5GT6L4JJg==" crossorigin="anonymous" referrerpolicy="no-referrer" />
     <link rel="stylesheet" href="{{ url_for('static', filename='bs_styles.css') }}">
 	{% endblock %}
 
 	{% block css_style %}
   {% endblock %}
 
-	<!-- Adding support for Font Awesome icons version 6 -->
-  <script src="https://kit.fontawesome.com/bff7dad824.js" integrity="sha512-+ohxkrmvsgaa299uNunuNiobFRMBGoAVR3t/fpqBmZdObzKnfBMKVyIqxrXtHMZDrwQS73ZuOVj8hUqxoJt+Ww==" crossorigin="anonymous"></script>
-
 	<style>
 
 		.spinner {

scout/server/templates/utils.html

@@ -12,7 +12,7 @@
       	<td>
       	  <small>
       	    <strong> {{ comment.user_name }} </strong>
-      	    on {{ comment.created_at.date() }}
+      	    on {{ comment.created_at.strftime('%y-%m-%d %H:%M') }}
       	    {% if comment.level == 'global' %}
                     <span class='badge bg-info text-white'>GLOBAL</span>
             {% endif %}
@@ -134,7 +134,7 @@
             <form method="POST" action="{{ url_for('cases.events', institute_id=institute._id, case_name=case.display_name, event_id=comment._id,_anchor='comments') }}">
               <small>
                 <strong>{{ comment.user_name }}</strong>
-                on {{ comment.created_at.date() }}
+                on {{ comment.created_at.strftime('%y-%m-%d %H:%M') }}
                 {% if comment.level == 'global' %}
                   <span class="badge bg-info">GLOBAL</span>
                 {% endif %}
@@ -208,7 +208,7 @@
             ({{ event.hpo_term }})
           {%- endif %}
           {%-if event.individuals %}, individuals: {{event.individuals|join(', ')}}{% endif %}
-          at <span class="timestamp">{{ event.created_at.date() }}</span>
+          at <span class="timestamp">{{ event.created_at.strftime('%y-%m-%d %H:%M') }}</span>
         </li>
       {% else %}
         <li class="list-group-item">No activity yet</li>

scout/server/utils.py

@@ -269,7 +269,8 @@ def case_has_mt_alignments(case_obj: dict):
 
 
 def case_has_rna_tracks(case_obj: Dict) -> bool:
-    """Returns True if one of more individuals of the case contain RNA-seq data
+    """Returns True if one or more individuals of the case contain RNA-seq data
+    Add this info to the case obj dict.
 
     Args:
         case_obj(dict)
@@ -277,10 +278,12 @@ def case_has_rna_tracks(case_obj: Dict) -> bool:
         True or False (bool)
     """
     # Display junctions track if available for any of the individuals
+    case_obj["has_rna_tracks"] = False
     for ind in case_obj.get("individuals", []):
         # RNA can have three different aln track files
         for path_name in ["splice_junctions_bed", "rna_coverage_bigwig", "rna_alignment_path"]:
             if _check_path_name(ind, path_name):
+                case_obj["has_rna_tracks"] = True
                 return True
     return False
 

{scout_browser-4.85.dist-info → scout_browser-4.86.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: scout-browser
-Version: 4.85
+Version: 4.86
 Summary: Clinical DNA variant visualizer and browser.
 Home-page: https://github.com/Clinical-Genomics/scout
 Author: Måns Magnusson
@@ -16,7 +16,7 @@ Classifier: Programming Language :: Python :: 3.6
 Description-Content-Type: text/markdown
 License-File: LICENSE
 Requires-Dist: werkzeug
-Requires-Dist: Flask >=2.0
+Requires-Dist: Flask>=2.0
 Requires-Dist: Flask-Bootstrap
 Requires-Dist: Flask-CORS
 Requires-Dist: path.py
@@ -26,9 +26,9 @@ Requires-Dist: Flask-WTF
 Requires-Dist: Flask-Mail
 Requires-Dist: coloredlogs
 Requires-Dist: query-phenomizer
-Requires-Dist: Flask-Babel >=3
-Requires-Dist: livereload
-Requires-Dist: tornado <6.3
+Requires-Dist: Flask-Babel>=3
+Requires-Dist: livereload>=2.7
+Requires-Dist: tornado>=6.4.1
 Requires-Dist: python-dateutil
 Requires-Dist: pymongo
 Requires-Dist: pathlib
@@ -47,14 +47,14 @@ Requires-Dist: flask-ldapconn
 Requires-Dist: cyvcf2
 Requires-Dist: configobj
 Requires-Dist: ped-parser
-Requires-Dist: pydantic >=2
-Requires-Dist: PyYaml >=5.1
-Requires-Dist: intervaltree ==3.0.2
+Requires-Dist: pydantic>=2
+Requires-Dist: PyYaml>=5.1
+Requires-Dist: intervaltree==3.0.2
 Requires-Dist: anytree
 Requires-Dist: tabulate
 Provides-Extra: coverage
-Requires-Dist: chanjo-report ; extra == 'coverage'
-Requires-Dist: pymysql ; extra == 'coverage'
+Requires-Dist: chanjo-report; extra == "coverage"
+Requires-Dist: pymysql; extra == "coverage"
 
 
 <p align="center">

{scout_browser-4.85.dist-info → scout_browser-4.86.dist-info}/RECORD

@@ -1,36 +1,37 @@
 scout/__init__.py,sha256=Z4liXvmEcLkC67ElsWvYHfemPKdWgWI5O6MB6XlDM8M,232
-scout/__version__.py,sha256=0tKXeulzMZX3om2NQDhtJ8c6Oms2h9SN1SxrM5kH4Q4,21
+scout/__version__.py,sha256=zYKQx08a1gvbjSpG6DiyHGDUoAWcbw-0P5ZAvghe_Lg,21
 scout/adapter/__init__.py,sha256=-iX_hx2NI1EMAqX0pMd5_90Nnd9uvIMxv9EbefYBzsc,86
 scout/adapter/client.py,sha256=IuajRsEwTG41ZP14X09Q1Cj94zIgmIvUtlXfcAFn0EA,1513
 scout/adapter/mongo/__init__.py,sha256=NdHYCUXWUAuX5cUS3-6HCws2hW9uoGep8i0SC-oJd3k,31
 scout/adapter/mongo/acmg.py,sha256=v2Zuw-6APVmcnBnNXa18WJEu2vj5GUhZNiKMkruJsBI,4170
-scout/adapter/mongo/base.py,sha256=6sN_KofLZS47CpxAnA0x2zhhc0k09riiKOAgaAaDzSI,4206
-scout/adapter/mongo/case.py,sha256=wXYmyv32gvnCGHgqys3ZGG3gAUyf_buC8LfSzDt4TFo,59238
+scout/adapter/mongo/base.py,sha256=1vX2QYqbVRLrFijpmAb1ENe6jaF2Bs5owwYa7MhY0vM,4341
+scout/adapter/mongo/case.py,sha256=a_ptUdoHScwCpf8uSQhkYWUB4mFDtHVeHmAa9-ig9gQ,60191
 scout/adapter/mongo/case_events.py,sha256=slHR4XJF9vRuEbuInJKMMAImLF8m7tHWVfGP42fbXr0,26859
 scout/adapter/mongo/case_group.py,sha256=tG8DuO0rNYepV4k0yCGPqssODErc0HMsAypg3mfhcV0,1575
 scout/adapter/mongo/clinvar.py,sha256=tczC39O3DFDkYgjt2RDgkkG-x1Mvx_99Hw7dAbIQ5gk,19838
 scout/adapter/mongo/cytoband.py,sha256=2NoIAoQ7RPqcipiSymD2O9qH8lXscP3T5ejquOrD7uQ,2622
 scout/adapter/mongo/disease_terms.py,sha256=4qcQRLuP5xn_RkB2RlNtwCrONmDuWwdlngZrj87BUEo,5637
 scout/adapter/mongo/event.py,sha256=NnURFhS5odOXk7So_gGMHmALPAJM0PWzESI4FC06azE,19842
-scout/adapter/mongo/filter.py,sha256=GoPqMDqteE1pDiVfpUP8xxT_1A8s7S4ByITCJGdesok,7570
+scout/adapter/mongo/filter.py,sha256=vzBJS_6vq2z76SH8PszdRR-MNuZ7_RA4VJvnkNYUs7s,8937
 scout/adapter/mongo/hgnc.py,sha256=Zcnf_kKJqrJAf62tUFODhL8OQUb695XnL_rzk4D9nes,16411
 scout/adapter/mongo/hpo.py,sha256=ps2Pix3sGeea7DenboZVP5j7Vh9WAgX3-sgpbAj0Eck,6871
 scout/adapter/mongo/index.py,sha256=TZPVv6xBWsEtZpBUWp5uhjuPjQMfVss4lZZju49g1Lw,3577
 scout/adapter/mongo/institute.py,sha256=GQmMKb_VzsvWwadp6gXHlSSpcG5ovF1ozdTzvpTFLpA,7025
 scout/adapter/mongo/managed_variant.py,sha256=YFdnIhNVIawVhmlOxHOpe6sJyso0FCGdlXOXyhSWol8,8373
 scout/adapter/mongo/matchmaker.py,sha256=amTvFOlUbrt1RmecY_8hPY6bO3j79lc2UbmzlCQcRuk,6378
+scout/adapter/mongo/omics_variant.py,sha256=0sdy4HTzYrULM_lAyrnUTx71YXtGRRDIxkqWq0G0-yg,5188
 scout/adapter/mongo/panel.py,sha256=KRerlJzlm-NZRihDMJzOiD9ECYqqsEkXxkbcLADL0mI,20921
 scout/adapter/mongo/phenomodel.py,sha256=cypSS8YRzu98Bf1kC0orfrLNn_ZQSYCK8e4mNR5PaPY,2572
-scout/adapter/mongo/query.py,sha256=Mpl8wxfmxFbue5Mixq1jCQcImCPg9D5nf6jCli2WDTM,32653
+scout/adapter/mongo/query.py,sha256=bifYuJ5oGYY17No2K8SvbnwCC__R585NaVRJ1oQIVsg,32964
 scout/adapter/mongo/rank_model.py,sha256=wvDNI4OLf-f7ZYZ_Q_6qi0myxOJCNNJR_-2-_0u2K2M,5712
 scout/adapter/mongo/transcript.py,sha256=3U1qtyxZ1DnrzdBJm_emJXISMYFKJuX_zAKynUt8NMY,7417
 scout/adapter/mongo/user.py,sha256=QoQnRWqi_dV3ZwGzBonEU6Ap9TgMDf2x_C5UIqG0pa0,2569
-scout/adapter/mongo/variant.py,sha256=SAwYcDY4rL0KaoaV8ZdjyPoz0G_EbC_sRnqA2U53iJU,34623
+scout/adapter/mongo/variant.py,sha256=bT64hbfhveu-p6HfyXbJGyNzJ2JGAfQ7WRuQz_PcaIw,34843
 scout/adapter/mongo/variant_events.py,sha256=LjUtxJLo3wGBjMI55wPs7sNPeDLq9POw6fgz0dzeuFM,31842
 scout/adapter/mongo/variant_loader.py,sha256=C05StRMFVChopcolPYXFIbh_S-FhYHu4NvBCpiBLOeE,28327
 scout/build/__init__.py,sha256=GUWEaXTpwsJil_KtrXBQJpZIwCQFSgo8NlK49R9IkA8,521
 scout/build/acmg.py,sha256=M21MrrP_dtEyOuu6t-jBDdaqYcHPMLcwJlt9fHG2ycE,1523
-scout/build/case.py,sha256=rSsY1ePm8Esn_heE5bU6z2LkKmPhJNiwnB1IeYzKwnU,11057
+scout/build/case.py,sha256=RK-FR7Vt1-350xF4UOfAVCdJi74SaMBMV4BmjdtJ2WU,11253
 scout/build/disease.py,sha256=Zew9AF_z1NbbKcO3uJZ2wgni501SkfnYRgnaCZ4m8FY,2020
 scout/build/hpo.py,sha256=LJBCTq-x09D0CSKcUHB8a6ynuUrVh_7Ia0ooA1BxMys,1207
 scout/build/individual.py,sha256=tWK8iKVujuCoZz-rhBVj-RCnlkU19vCSyJtXhlENwS4,5117
@@ -48,7 +49,7 @@ scout/build/variant/compound.py,sha256=tYikQ4PmgAH1_yrE9uYaUX4_EoAs_XEiT8JWAjrZu
 scout/build/variant/gene.py,sha256=9mS6sEBksBNKDoyo-yo-_5IdSRwYrpF1jIzfNAg6-Ek,3815
 scout/build/variant/genotype.py,sha256=QDTZWFB8ix9Zd1m9UPWgT008i6rC7gT-uFzRr9GniDU,1009
 scout/build/variant/transcript.py,sha256=hf_led1kdT3hVEwtHdORhBSk6a6o_zEDJ0z4ZF8IlFA,1205
-scout/build/variant/variant.py,sha256=GJBRoAb-Ul9_tR1tUmnNpS9lpJOlLV0K4mEid98jS58,18427
+scout/build/variant/variant.py,sha256=1BcGarXmLm8mUVmhwBWRBx9tt7C4Rwb8qBJ7STnsAqE,18509
 scout/commands/__init__.py,sha256=VrenBj1daCAnIsBZtvdbv1SuxmODT_TTY8YcxWItrXE,22
 scout/commands/base.py,sha256=WmUko96zsPbC3cUIezy0CAOOGKBFU-BoW-BPAhLORCE,4610
 scout/commands/convert.py,sha256=T5dkFjRKSTf7dBS9uKIW4wEmdL13vKzKTLRy4nvf6Vg,1090
@@ -123,26 +124,26 @@ scout/commands/view/intervals.py,sha256=8Pofxy0DwL2Euh3SdnTLLWsU6DjLNOwIGdxeCS83
 scout/commands/view/panels.py,sha256=a0fQcP9-SDPuRYV7aEgIGUCYaMN6V47h6finpcdoomU,1098
 scout/commands/view/transcripts.py,sha256=59WyNNp7zHPJIz9QgzrkoeKaSXTtuLli0VuL8IidEmY,1277
 scout/commands/view/users.py,sha256=MKlmhDYRM7Yf-Trmi1ijEuqsDIUn326bdFADyDs7XYg,832
-scout/constants/__init__.py,sha256=u-faDDRxNzCeAKryKLdFSuIDSjrg6_BUj-5BYzXzXWs,6827
+scout/constants/__init__.py,sha256=phyLVKTDNqMKzWRaNvKqgdEZCOO1gc-2LbkCDwN6nhI,6901
 scout/constants/acmg.py,sha256=fjq_UFLkJPh7ZfuW-l4KH_lWKAGhNiKhlaPu1G_WXo4,13091
-scout/constants/case_tags.py,sha256=Pr9Go_I8udRnrdcRcZdu4swS0Jpdwf8hUdDVGR6d9yY,10937
-scout/constants/clinvar.py,sha256=TzbnbUsSBML3k1SBVIL3kQh5Hwjq5kqKhtQOOEkfHwU,5586
+scout/constants/case_tags.py,sha256=4_q-2nooD7A3VYkeKla6mHbUSsP1_HKlsEqg4FMER1g,10986
+scout/constants/clinvar.py,sha256=nr7KhwMIO_7taNQokRJlpgZfenMlKsdPIMpdOx3TwKY,5594
 scout/constants/clnsig.py,sha256=2u_avIzWO_IPJGcTOoSB7_xqgu5JBl_zZZfT8UVpY90,1359
 scout/constants/disease_parsing.py,sha256=m10iPVzdTsdx7v9ZWvdLjlBrQKR_uyMeJwPbokO9SHY,688
-scout/constants/file_types.py,sha256=e_wlISYjSde2pJLByUoCCNZpN5gQBXdM1uN6FR077_4,2261
-scout/constants/filters.py,sha256=8nRRb7_17G4P8zMgJ7qrK4NAAuGbPLl-pU5GPP3L4eE,889
+scout/constants/file_types.py,sha256=3BU2cw40cHMT5IzEGEF_SsIhgYUbnIlUCRmwmB01fzI,3046
+scout/constants/filters.py,sha256=1bcj-z7__yv5eQpjB60wqSHZ3U5U0CVyNbcYT-Wn-vc,957
 scout/constants/gene_tags.py,sha256=tdzDh6ukJRtHiC8X5YkldijZCS0KrEeXj95sLNlqxuc,3852
 scout/constants/igv_tracks.py,sha256=3-3VzFpCTfuhbEBAitbpY2lQRYXYf-poya3DXs0g9yE,4500
-scout/constants/indexes.py,sha256=6hX64eouUQx6kdPd1rTGEQAM9htDaEPwjy35USVbkJ4,4842
+scout/constants/indexes.py,sha256=954b9H72rKI8qSSQbeQDjSl9gYBFGFq0Jd1mTH3Lkmk,5351
 scout/constants/phenotype.py,sha256=MrbXirisR_7GPnxV3NOj3-BoM9CvtGgFZj7PfJu85RM,2331
 scout/constants/query_terms.py,sha256=RrHSBde-UNfdD2D5r1ViHcLfDD-q_sEkLZsPKOE91x4,1556
 scout/constants/so_terms.py,sha256=aJcQv3wgpZylVhqSJH854WS8xSARDxWGnW6I5mG1egE,4321
-scout/constants/variant_tags.py,sha256=HZo_9adwSaoQTTmro6PdXNdiPYF4dNAhK19674wGC8k,16131
+scout/constants/variant_tags.py,sha256=YbQOcrqXpVgK1BsBveNYIOIZm4m6ydiOlJkJ_C0njMQ,16217
 scout/constants/variants_export.py,sha256=ee3dyM6CifvPUU4zsVwYzG9Dptn3qBBhP72olHHJ6i4,1942
 scout/demo/643594.clinical.SV.vcf.gz,sha256=Y5CcTI7vJAS53ch8OHPR80X44rArHZoQeQZGl8AHmq0,11927
 scout/demo/643594.clinical.SV.vcf.gz.tbi,sha256=1CPB8ftoYF3gjRfqG0xMQlVMD1lY0xSdXp_KrJbfzac,1284
-scout/demo/643594.clinical.mei.vcf.gz,sha256=SOkbn0eg9kGbh3hear1XRaAwPQOyekMmNASx2pRtgGU,452538
-scout/demo/643594.clinical.mei.vcf.gz.tbi,sha256=9FWv2Hm7mL0Hdh7IRzmOVXmoVQ05oeRXwT1n3x3VT-s,45156
+scout/demo/643594.clinical.mei.vcf.gz,sha256=x6qBLt7wYcB2Em6LLo6pTgxP497JhpDVR8Z_pObIeME,33244
+scout/demo/643594.clinical.mei.vcf.gz.tbi,sha256=blDHttlofJJD793dKhHU5N1W9LYWBcR2MjuVeCUSs1o,6735
 scout/demo/643594.clinical.str.annotated.limits.vcf.gz,sha256=BRemoxlPOTB208r0ST2ZaigCnCZL8EA2c30BsxPHDVE,1941
 scout/demo/643594.clinical.str.annotated.limits.vcf.gz.tbi,sha256=rHIgul9b8Q2zFTZMwKIr-al55m0MWgYarcUYB959l64,1698
 scout/demo/643594.clinical.str.annotated.vcf.gz,sha256=MZbsdCkmzUZGdVVeeGcqKTVATvADw45kfRiw-U6AN40,1744
@@ -153,7 +154,7 @@ scout/demo/643594.clinical.str.vcf.gz,sha256=ElvicUseKkN-DiZOQrFXstxy2jo9lhVMn58
 scout/demo/643594.clinical.str.vcf.gz.tbi,sha256=pyWRI8-DlfGw08S66nYqLOthbaRaNMpAhUACm48iM5A,1695
 scout/demo/643594.clinical.vcf.gz,sha256=ukJjOeF1VuIej02garL_U6aq4Ef8WuO6qOknzK46HPg,408818
 scout/demo/643594.clinical.vcf.gz.tbi,sha256=G4RJMk1GYIDS1IVfXPVkGFtmPN_m0jwwqltdWWuk1A8,7721
-scout/demo/643594.config.yaml,sha256=wLLEMsoSj8NwDjKrEGlm6_5Bh4I7yBj3ta1n8uHiqUc,5212
+scout/demo/643594.config.yaml,sha256=wHeyFLGiGBViu0RQeELt4IDValaXpqUVfVRSSa1rhEk,5344
 scout/demo/643594.ped,sha256=P-k5eZY78ZRtajMDQ_rr7Xv5oFhBO-vDc7whg36Jnw4,154
 scout/demo/643594.ped_check.csv,sha256=36HoP13haqQerTEHuJF4R2r6Vh2AQilS1NTr7X6aoZs,444
 scout/demo/643594.peddy.ped,sha256=msfhM3u_5hK_zjHhMas5Ns_KREllRyHN3kdTIVl5J-c,421
@@ -219,6 +220,8 @@ scout/demo/REViewer_test_data/catalog_test.json,sha256=PRW2kEHewbKSCDmeCroD_xr02
 scout/demo/REViewer_test_data/justhusky_exphun_hugelymodelbat.vcf,sha256=vDxE9g39qagsLRP3NMQFTyk5LCQ0vB9VOpRQEsyCugg,16806
 scout/demo/REViewer_test_data/justhusky_exphun_hugelymodelbat_realigned.bam,sha256=qfAKBgWxd3kgFeCRtobEpsblZ7MzujjGjxUhhMyXPUU,645353
 scout/demo/REViewer_test_data/justhusky_exphun_hugelymodelbat_realigned.bam.bai,sha256=pLTfqUBXWwy7toazRJpwZjLvYFUQzyEe90XIK7aC20g,2928
+scout/demo/drop/fraser_top_hits_clinical.tsv,sha256=kI6XILOrkA7B8yi4M8-hnMiU2w5KKEMlxSZIXMgXvXc,1429
+scout/demo/drop/outrider_top_hits_clinical.tsv,sha256=dluEbEOUgGl0c46TqulypKkASE4Okqbcpj1fN0iN83Y,1986
 scout/demo/images/chromograph_demo/autozygous_regions1.png,sha256=s38TohYneAt6BTdSpw6XS8nbI5gu8gIDMQlXAsnlWwM,1982
 scout/demo/images/chromograph_demo/autozygous_regions10.png,sha256=0678vvwryBPQKmonC3HQ_KFDG120nHviVJlLhkR74QY,1782
 scout/demo/images/chromograph_demo/autozygous_regions11.png,sha256=ZFGPlqMwgXx2M7myU1uViXSA333z0-gOFp134RrHl-E,1796
@@ -369,7 +372,7 @@ scout/load/hpo.py,sha256=ZWYjV9j6OfpI-ZZuhTQVEs_xgLa7ST2KuvYLW6ku0PY,2474
 scout/load/institute.py,sha256=etmZ0CZRHOVi3f9R-wn5BK1pZPhtZwq2QYbh2RXXxDc,625
 scout/load/panel.py,sha256=JQqkyUdpvhFnW81n8Sq-iPahDcm1hGBzLfrwUcVqt4k,9446
 scout/load/report.py,sha256=TJvblks6Dp5-UDflWRTa8b3fe-A4bT4QnWT2yZLhfLA,820
-scout/load/setup.py,sha256=QoT5WZgzTT5c9b_lgkFUXlyRYDpHboJHzdcvEcObbds,8194
+scout/load/setup.py,sha256=0qQgfCr53oHL626hG5y0o5vwRnJ4X0IMaTFvMBMRNQE,8183
 scout/load/transcript.py,sha256=mk0Da7GWwqLVRp2xRD9mlzqaomH9R-TL2aKCJx4fEA8,4632
 scout/log/__init__.py,sha256=ezc9URKnFoELUif9ZNqG6vNzXPOccGuDyzqoBngSIZo,63
 scout/log/handlers.py,sha256=nwcSeqwtcesiIiEnpVOm7vTugDTOBodP6apm9Z1LIqk,1350
@@ -382,13 +385,14 @@ scout/models/event.py,sha256=2v9K7hbSa6bgadolGnGL7OymSibNGRyTZXlnL_SrFTM,1863
 scout/models/hgnc_map.py,sha256=U2v7ie4BxQUVMXvyQoiAcXitNSrEAm_3F7DUkn10ivw,3975
 scout/models/institute.py,sha256=jADVsDmPl2q6GfzoHkfAyyXa3J4E6ghrJl5m1DI6FiI,1854
 scout/models/managed_variant.py,sha256=H6ak7su6n2fRB5o21JdAUNkxsNBeeQjRIgmUAqLB--w,2526
+scout/models/omics_variant.py,sha256=WkZLE-O91p85l5vjBwufl5F9B7in2ttM0v6R89iHScQ,8562
 scout/models/panel.py,sha256=d5IhLcWqB9XiXCKZNzjaxz9f_bogqQ71wbVhAEqmujk,786
 scout/models/phenomodel.py,sha256=UitSXqy41X4R7K6MT6EeLqZsKNKRhlEfnvXa-Brt2NA,1298
 scout/models/phenotype_term.py,sha256=jY7dbfPzgE14M1gWqifm5YKkwMlrtfFa_WBHMT1_ogs,927
 scout/models/user.py,sha256=oercrjpf9fLomqAcN0Fv1BL_XPjOrS_vchURo0RP7es,1134
 scout/models/case/__init__.py,sha256=Sqczn7Wm9KYZtPGAHCvwX_6j9vlaK-0myJtSDlS-448,121
 scout/models/case/case.py,sha256=7r-lR5jr3hNyM0jo-KxQDY7CLjtgtzu26PHOalx1s68,5213
-scout/models/case/case_loading_models.py,sha256=fvTWd90_5n-630y8tbZ3nHiarWgrc9x74uvnqW-oHy4,20112
+scout/models/case/case_loading_models.py,sha256=RHUZa71PkWUMu1tLm7cw2JhxQ8jnW1D-_4oF2WMAAmg,20939
 scout/models/variant/__init__.py,sha256=H-IZ2hSTSVS28S8FZzA8j2Cyu1PHQFXyMWJFtCucPAk,40
 scout/models/variant/gene.py,sha256=98CG_JcAklGGFIrUulf1_olQalV65kXQO-gOf7VQZ0A,1095
 scout/models/variant/transcript.py,sha256=rfflEbTs7Bn4HDENqrxtGopQ_0HKnrVLLyBcrj4NpwM,1720
@@ -409,14 +413,16 @@ scout/parse/orpha.py,sha256=5u9xqGpAn8vgoJ0uVqbYiqQBiNfBwXOiTzX16kAnmFU,4392
 scout/parse/panel.py,sha256=4HYjokWh2sF-effLQxPf4ZzRHsf9grqF1Z9f-HAaRmk,13153
 scout/parse/peddy.py,sha256=uM49GaZMtr8waCsZDvCHDS5JDQ43JUlhdWh9C7f7ZvU,5418
 scout/parse/smn.py,sha256=iOK1N8iYm9dFigsKtWq0Y0ZCa1CH29s9zeR_tH0bPuc,1153
+scout/parse/omics_variant/__init__.py,sha256=vq8Ew4_Xr2vPy_3Fg0eTpPWsQpWnUXYBhjRndBUvtTw,422
+scout/parse/omics_variant/drop.py,sha256=SD98E9ksPPv62SFUuR4TfZHVIIIy1RXZRdMhm5Hu4RQ,478
 scout/parse/variant/__init__.py,sha256=5yqCQlAYMqosRabdipFUXqopSMBN4X6jwpNiKiYKlsE,35
-scout/parse/variant/callers.py,sha256=o3Dccf_f_TrKHEYAbMMHMpLYUdIjQQHPA8PMuN2KdYM,2248
+scout/parse/variant/callers.py,sha256=roTeQUMMNxOCeRHuL-TwJpIg5OwetMn4v-5E2xWvulU,2372
 scout/parse/variant/clnsig.py,sha256=7egXPwXzaIMTj7dnKnsaHpgZa-STSoBqB1ZlpOS4RYA,4606
 scout/parse/variant/compound.py,sha256=zeRHBwobusCW-ylgurHrnPsc-edeJHeXj6xjXkrbFt8,1493
 scout/parse/variant/conservation.py,sha256=8eHXy57g6ng0eMo38LsIcQ8w_H5mpBSfiMuaXF7aBi4,2949
 scout/parse/variant/coordinates.py,sha256=CU-EyD8NVgTbyIdmYDO3k-zVaMN1EDONjorDwyUSnXU,4742
 scout/parse/variant/deleteriousness.py,sha256=zeFzx218GL-5pKniyci7MVHj3a1cep4nmvoSg7u0ogA,541
-scout/parse/variant/frequency.py,sha256=dKWvuXtG5Ow3QyDMBYdDBgJQGhqZmQWlcEG0YosA87M,7624
+scout/parse/variant/frequency.py,sha256=kpUNrXvg6IeLvf3TFmEni5lUfp1jFIMCKMrevJwUCNg,7854
 scout/parse/variant/gene.py,sha256=30SR2ck12HQW87LlRfchdgPVzOxb74aIXC2WzPL2BPk,4688
 scout/parse/variant/genotype.py,sha256=QDSn9dRpbyNQgbu5rQtRAp3k1XQkiem_3B9H6ttMaKA,16495
 scout/parse/variant/headers.py,sha256=se3H4r22q30MIvtOyc5jWNXZLVnDx58X4h-eED7hkl4,2947
@@ -430,31 +436,31 @@ scout/resources/__init__.py,sha256=i9UVG651subgmOZ-Gm-JKPsXBqr5-50QUDfSpbwmwIw,4
 scout/resources/cytoBand_hg19.txt.gz,sha256=pheUD5b9NlVuvwwnbKwDc2FG80Yg70gvPxVXP-Sqd3k,6147
 scout/resources/cytoBand_hg38.txt.gz,sha256=sqSVmvPlktQ-0hTiTapJM-5UgyV6xDoYZuTF0kPuETs,6105
 scout/server/__init__.py,sha256=iwhKnzeBJLKxpRVjvzwiRE63_zNpIBfaKLITauVph-0,24
-scout/server/app.py,sha256=H-0MXcqyP897No1bRzETR1m9vUq7Up1jDsVRwdTG9qU,10394
+scout/server/app.py,sha256=q8A9CztBE5fSr3WG7F5PNvFlcTIw5bE_Yx5_jVAjMaQ,10503
 scout/server/auto.py,sha256=8B6GwfOaUChkTLuLgYQDFMWlxGuHkEegF1argH2G2Ik,401
-scout/server/config.py,sha256=5dIxQ2Fowh5HUpRRmDTAnbAfzAbXrUdmKKzJ2JrccTw,5598
-scout/server/links.py,sha256=ih5hFdxe_sYHGXY1AtB-_LVf4HHnFirs37Z_eXL5SQM,26998
-scout/server/utils.py,sha256=t9wRs2L2NojrlFeYHtxpIiebU5RljqRCjV7-sut0cT4,12505
+scout/server/config.py,sha256=O2_9Wlbw8UsfjxKgRnuLSkhYTH5HptUjPHIF-bKIYdQ,5816
+scout/server/links.py,sha256=WWHQ7CcJxemwR7Cm0n7CvZOfV0dG-_xEAfVff_m_x6U,27013
+scout/server/utils.py,sha256=lhFJI6UkNDD1OPnC53SYG2vjfMNmjp4BBf1tcO8R-ZM,12634
 scout/server/blueprints/__init__.py,sha256=iwhKnzeBJLKxpRVjvzwiRE63_zNpIBfaKLITauVph-0,24
 scout/server/blueprints/alignviewers/__init__.py,sha256=XMVed2ekVUAvroqENDHSr2pwM8otqau8ZA-rbH1T2U8,59
-scout/server/blueprints/alignviewers/controllers.py,sha256=GN7QrwbG2rj3HIArTqHTw0QH4jLCY_NhNGUwrMU4D1M,12278
+scout/server/blueprints/alignviewers/controllers.py,sha256=SDTmb4TreWWa1E1SLnQNOfyb-5dcdibpr_t2V9v82rY,12603
 scout/server/blueprints/alignviewers/partial.py,sha256=9hpI00yhvZZCcPVUHlVDp488r1j7vYU5YDXYA6OkWQM,2005
-scout/server/blueprints/alignviewers/views.py,sha256=IHsi7vNdBaTnqxo2IzD-kn9BNES0eqLMy5kWOeKNhRM,4733
-scout/server/blueprints/alignviewers/templates/alignviewers/igv_sashimi_viewer.html,sha256=2SCRN7lNAjdQWx3hB6avDPZ4lwfE4tgM4ksUS_SZQok,5219
-scout/server/blueprints/alignviewers/templates/alignviewers/igv_viewer.html,sha256=Wmu2EODYZXa-WGNjAMkGE4uOu7t4MrePAKXumtYSD_g,7013
-scout/server/blueprints/alignviewers/templates/alignviewers/utils.html,sha256=ni4V7PqM0KQbDv1jwE9dBCc1oqyP3frGqv_uTn33FPg,206
+scout/server/blueprints/alignviewers/views.py,sha256=yQmWqzjdYmqs4e2nzDPLNjgpsNzKhBv1LJGaJi8bnyc,4963
+scout/server/blueprints/alignviewers/templates/alignviewers/igv_sashimi_viewer.html,sha256=ZIbW6e-K2jKWK5WAGK9NkxVywruxm7kxIKRI1w5PaWg,5495
+scout/server/blueprints/alignviewers/templates/alignviewers/igv_viewer.html,sha256=uTJkmnoWfrhZQVRq8fDd4eGBxfrlU7GswvEHCrX-NMk,8496
+scout/server/blueprints/alignviewers/templates/alignviewers/utils.html,sha256=ZGVv4-mCn63QxJ0YfWx_RjgXJaAWfBjM-90i4IinXUY,204
 scout/server/blueprints/api/__init__.py,sha256=HR6HjS7ot1K_8Lt5eQdNT154z_FCdHGSigy8r2LpNCI,26
 scout/server/blueprints/api/views.py,sha256=pbl78wfhrm1T8JmiJDYF3BbTbfFrlF-hQRbuv2GWI0s,3729
 scout/server/blueprints/cases/__init__.py,sha256=_c17kPFITFYcIVphF4V9bf0PZBer8bU3rtVWQnljKDU,52
-scout/server/blueprints/cases/controllers.py,sha256=lVBZy7udshXltMZtjkQWP-0ypNHOOagi_Tciqq5PMJ8,54666
+scout/server/blueprints/cases/controllers.py,sha256=pG-IHAKqGpqCwcgsRj77k5NJye6T3xUXhgmn0TIT9H8,54811
 scout/server/blueprints/cases/views.py,sha256=ZfuDfkcOiw7PHUr68mowJyYxUb6_gQObR488mhP6l78,42841
 scout/server/blueprints/cases/static/case_images.js,sha256=pb_gG7DNQc-1lADqSII8YvjBwmHyeQWYVtuu2jyrTlU,14997
 scout/server/blueprints/cases/static/case_styles.css,sha256=2Pgc8pFf9DR5HM1sTdAjaRWhjL-bK5bsQnLpH54HZak,541
 scout/server/blueprints/cases/static/edit_pedigree.js,sha256=ntC5fie7SsOYJau8qkke1UHxjiYWY_gBzWcIkGpdJUA,2978
 scout/server/blueprints/cases/static/madeline.js,sha256=KHxKMBVlYVJODNu5QkY9hhsGkDJNoaCoCZZ0DRu0YN0,1175
-scout/server/blueprints/cases/templates/cases/case.html,sha256=3wpGT8Vfoo3xBOVxf0N-SUpFoZwlHSf3K9vrlOxAL08,36560
+scout/server/blueprints/cases/templates/cases/case.html,sha256=9Fcn-OFA1yIHchD0PjDs7-Y8I7Qqr8o6cavN0eOi5rI,37183
 scout/server/blueprints/cases/templates/cases/case_bionano.html,sha256=PLoRv7hDJcHwxhi-0hC9fQSZc7V_aUYHBhhQqcn_2G8,5946
-scout/server/blueprints/cases/templates/cases/case_report.html,sha256=1tosH5xEl6CCZ1P6qlR5OKvWbAC5z3ewKL_JGdgPMBM,63635
+scout/server/blueprints/cases/templates/cases/case_report.html,sha256=5vGSFpFdZN_mwNs-WDJHbsXimDiEE9EJkzXHoh1lEVU,62822
 scout/server/blueprints/cases/templates/cases/case_sma.html,sha256=SAcElb4kH05mkPdEdaEbed-vbgQQGfxioCoNZsHljDc,4962
 scout/server/blueprints/cases/templates/cases/case_tabular_view.html,sha256=ko-LDUKmIoTazMZ2nFWvPEZsgObU07RwqIkDYFjokoY,4317
 scout/server/blueprints/cases/templates/cases/chanjo2_form.html,sha256=5Wmk7DM8LI3MynqzxeTzAr_EoEBwVVo31djcI5ZlTdo,2164
@@ -465,10 +471,10 @@ scout/server/blueprints/cases/templates/cases/index.html,sha256=oUmjFyUvwP4yo21C
 scout/server/blueprints/cases/templates/cases/individuals_table.html,sha256=DXE7gE0f81B5CxCV1e5bqWv27_HS-9-8nc0pcFkMoOg,11497
 scout/server/blueprints/cases/templates/cases/institutes_sidebar.html,sha256=u0oPGHJ0ipZ1LkjHkbwlWfkUWc1h6XH1nh3tkbX17z0,4546
 scout/server/blueprints/cases/templates/cases/matchmaker.html,sha256=1vwGBhM4HgvRMlO1foKBAwV-Wfvfs1MRvzteOETCZeM,13142
-scout/server/blueprints/cases/templates/cases/phenotype.html,sha256=kBHD13SjBUGz0b79cQ2rfgdx3JPyJGDR38kscGZJai0,16120
-scout/server/blueprints/cases/templates/cases/utils.html,sha256=EwMPMGmHPuDRS3J88Ga4ram2y3fzopVs38HjnvZHfyM,34912
+scout/server/blueprints/cases/templates/cases/phenotype.html,sha256=7vz5XPUExD6vc-wdijLKnPzaOFm9mQxOZ_ITAL3y7U8,16420
+scout/server/blueprints/cases/templates/cases/utils.html,sha256=gHcxf3DOGcJJZMfjKY4NgvU_tjta5OnyWrKZy9pfGyY,35981
 scout/server/blueprints/clinvar/__init__.py,sha256=BV3aH2AbiA2WWrUEMbGd0H9MefFd2eTsRE9ShywbzpI,30
-scout/server/blueprints/clinvar/controllers.py,sha256=TEOdUTVYI-I_lzts0F3M_TFPMkeeweWIUxWug5HUhDw,24059
+scout/server/blueprints/clinvar/controllers.py,sha256=EZv6cwmg2pYwLFq5SPskrARrjjf3Az7GN23lcZn52vg,24254
 scout/server/blueprints/clinvar/form.py,sha256=d0EBJouYsk-kIpGtAr_SfNCyLoBNchfLt25uFR9HxO0,5155
 scout/server/blueprints/clinvar/views.py,sha256=hPyTJA7Qy6QOL-ENSG1N0atnQXuYCb-iiO8fuNDjJns,6036
 scout/server/blueprints/clinvar/static/form_style.css,sha256=Tro2w0Su9st2ZRpt8PjF7qXYet-0n6Eyol4oh94JafU,4073
@@ -476,11 +482,11 @@ scout/server/blueprints/clinvar/templates/clinvar/clinvar_howto.html,sha256=phFs
 scout/server/blueprints/clinvar/templates/clinvar/clinvar_submissions.html,sha256=4PPiOSXszJy-yqjhideoWhQ2SwRZ9o66yL7slUHqeeM,18241
 scout/server/blueprints/clinvar/templates/clinvar/multistep_add_variant.html,sha256=z6OQ3uEOtkFQAltPYg3Vn8E7__WvK-vc4LOFLYZ7YUM,31623
 scout/server/blueprints/dashboard/__init__.py,sha256=9YTjGeFexyEbl4P-gs7j8VEjyhnVwHZFfz57eTtod1M,69
-scout/server/blueprints/dashboard/controllers.py,sha256=n85n1lm1MJulPBhKk3VrUH8EXaVqt9TrP0Dolb0U7F0,9582
+scout/server/blueprints/dashboard/controllers.py,sha256=c0oOVzyHmQEypQPGRr8Kh_QdKidMjwqPd9UF1_kFLIk,10698
 scout/server/blueprints/dashboard/forms.py,sha256=CgwCHGZcxi08-04hwlw-rXZau_C9X2Qoq1ayTd533qY,826
 scout/server/blueprints/dashboard/views.py,sha256=VjJI44FBfjQMR21AKminmQWmM3QT9VA4QFKGQDQykKY,512
-scout/server/blueprints/dashboard/static/charts.js,sha256=_OSNlhWM8Tys2kReCWAR8RgPlgYNDXJmrZNJs6yXruk,4228
-scout/server/blueprints/dashboard/templates/dashboard/dashboard_general.html,sha256=OypTHBlXrGvl9Rn0Vs82hkN8JE7oBl2nBmOoXJDwjUI,6507
+scout/server/blueprints/dashboard/static/charts.js,sha256=P7VmITDatAROmBvCxYRd_Bq5dQDb7Ew61DszfwOtjvY,4250
+scout/server/blueprints/dashboard/templates/dashboard/dashboard_general.html,sha256=WhOzXojmDJJfgOjERM_PlM8J7OafdUbJuXK-9oqbPto,6504
 scout/server/blueprints/diagnoses/__init__.py,sha256=sORNuH8TXn63RI7KVRSVrMrPwTzZs9gNMfPxtzUZW-U,27
 scout/server/blueprints/diagnoses/controllers.py,sha256=h-enZ2T8lwPDFl9pVKRZ7Mr41xMyMLtmT4j4CBG6joQ,1654
 scout/server/blueprints/diagnoses/views.py,sha256=zGfYxrrzE1qNn4wyoBdgKpfozJb6XpVEcC0sBwmPDXA,1252
@@ -495,18 +501,18 @@ scout/server/blueprints/genes/templates/genes/genes.html,sha256=x6jXKijvuEX9GvIe
 scout/server/blueprints/genes/templates/genes/layout.html,sha256=cZMLe2cInq24z0sZpPxDm_kEiAe5VQbOR-8XWn6wlvI,1601
 scout/server/blueprints/institutes/__init__.py,sha256=kGSyYrBC1QaEQBDdoMkMLfaowV7roaV5DowICi_0RSQ,65
 scout/server/blueprints/institutes/controllers.py,sha256=vVzqjsa6DT_FJgqwRujdZVTe0tclWXNhe5xXjX5zvnE,32444
-scout/server/blueprints/institutes/forms.py,sha256=c76D9mPQNmUc9PN43_2w3tHRXxHO9Drg1J8BkG-2v4g,5658
-scout/server/blueprints/institutes/views.py,sha256=nzpslF6WeKJL_DClu2njJRXupBzoPD6C2j6GI8NWQ-E,8614
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+scout/server/blueprints/institutes/views.py,sha256=Bx_hQm4oL12OaljiTogG3CnrkGYczsUzRfDckwBJhmU,8621
 scout/server/blueprints/institutes/static/form_scripts.js,sha256=8Sn7omeXeeUbiXJPfT0Qb4CaBJ_KtZZWw7N2he7EDx0,747
 scout/server/blueprints/institutes/static/select2_darktheme.css,sha256=Nq_va597W_e5y-52B4ClwSJzACq0WFbPU8SIp3DtKIo,1818
 scout/server/blueprints/institutes/static/timeline_styles.css,sha256=Vq48ffIidpQmDQhAzfW47O9mGQZEWdlbMtOE8AK-ZEU,2122
 scout/server/blueprints/institutes/static/variants_list_scripts.js,sha256=gO_ZuJC2jj7Y9x6CEVEVhN1oIE4bIWrTY0_zVcsbRbY,236
-scout/server/blueprints/institutes/templates/overview/cases.html,sha256=flMDRMOT6HFkKjszJ9eM0WYoLEp7DkPnqPh_YuJ8D2k,14372
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 scout/server/blueprints/institutes/templates/overview/causatives.html,sha256=KHCPIshkenOjIVWkG9usfLqkORChonGdOiIRw0h1oj0,1593
 scout/server/blueprints/institutes/templates/overview/filters.html,sha256=Dzu5YicmdjW_zGqbCUrb8TMbSUuRaG47itTMwwX7Bm8,3102
-scout/server/blueprints/institutes/templates/overview/gene_variants.html,sha256=Gux54z0-Lov8UwnNabfoWPZ4eRmU5jQ7zIhZRB2o3Mg,7756
+scout/server/blueprints/institutes/templates/overview/gene_variants.html,sha256=LpI-uBXP5eoOMrLyrIeCwVKTrzF-7sD8FESZptvFmOw,8571
 scout/server/blueprints/institutes/templates/overview/institute_settings.html,sha256=EqOek5bso0wKqeEnUPW1z2mIpwRl8kuFyDKHJZ0FJx4,5014
-scout/server/blueprints/institutes/templates/overview/institute_sidebar.html,sha256=48_uoDADPRv-V2Xa8OMmMUnFYprsz17L5jLPeEVBWC8,4309
+scout/server/blueprints/institutes/templates/overview/institute_sidebar.html,sha256=vQQunXH2Cr8-z2Kc7uTCzsSqIX14Xld44NWqdhpw-Hs,4304
 scout/server/blueprints/institutes/templates/overview/timeline.html,sha256=upTv7v4sUwxGfJDSyk8F5zPb61dedG66zgfvh_SMR4M,2289
 scout/server/blueprints/institutes/templates/overview/users.html,sha256=6dkbDBNLw2b97M2Pd8JImpPoT3FLTcl84oBN3inLJRg,1134
 scout/server/blueprints/institutes/templates/overview/utils.html,sha256=Ef5zOSQdPpKZ233R4RpaeXSZuqqi5G-E4OxBiIfITvc,25136
@@ -529,15 +535,19 @@ scout/server/blueprints/managed_variants/controllers.py,sha256=HQ9jkTMzVEBLEmswX
 scout/server/blueprints/managed_variants/forms.py,sha256=cxpr4Xunvay7_bBy85FjURo869hWGlW1SbsIUTWhPeU,2208
 scout/server/blueprints/managed_variants/views.py,sha256=wHOClPy2ZCIQvandia90kG6I6IPhxKVOiAnG4esXh-0,2473
 scout/server/blueprints/managed_variants/templates/managed_variants/managed_variants.html,sha256=gE1eP1E1A20z7UUuf36onLU75537rrNlR-P9pbwwtnI,17295
+scout/server/blueprints/omics_variants/__init__.py,sha256=8UVXrChArhIvMxtgUcG-udvmlTn56q41iy-naOZw5us,37
+scout/server/blueprints/omics_variants/controllers.py,sha256=AnM70stvLniJIU3pFUX-InNjuT-7K0RpuAEYa7vM-jw,3912
+scout/server/blueprints/omics_variants/views.py,sha256=4_wOqAhu_Zl6heqm7ilE8y8xOfy3PU532rkp_H0KZFg,3724
+scout/server/blueprints/omics_variants/templates/omics_variants/outliers.html,sha256=R76aX5qDsSrrUOvfIaGswc7NRwojwFeyK5zcpNXmD6M,12960
 scout/server/blueprints/panels/__init__.py,sha256=usxBF0O7zNX1d9jt-8DRoFZwcfHHS96Gv87LDr1AgG4,53
-scout/server/blueprints/panels/controllers.py,sha256=jpWSxSdu_U6mxBjxQlnIEBNv0nsJ0aHUecWA3gFhcJw,12898
+scout/server/blueprints/panels/controllers.py,sha256=apNwdE8gphRTViChoL_yfBJP-H1BfpyAyrIJMv88d9c,12659
 scout/server/blueprints/panels/forms.py,sha256=DYlhYpnpv7ehf9JlY3HRFwy-TZ5QDHB0RIRaNTAW1jQ,696
-scout/server/blueprints/panels/views.py,sha256=mJ9WlkmK-ZIysYrMAEDkQ5Y35b76LsrYE9sdP_BvN2Y,15746
+scout/server/blueprints/panels/views.py,sha256=pkrAqoIfOr2kh3Kb5f1HdHQnLSMwLGFiLgja_eInTdM,15688
 scout/server/blueprints/panels/templates/panels/gene-edit.html,sha256=ZuXxdvjioxHlC0mz54t4q2KBFvP2qXb5VpNIcMVayVM,3649
 scout/server/blueprints/panels/templates/panels/panel.html,sha256=TxFAMRWQfveftJ4wxXJ_swxzq3GeIzwWegnoICQvJTk,15468
 scout/server/blueprints/panels/templates/panels/panel_pdf_case_hits.html,sha256=uzfZJiMNQiTa_6u4uMuIbK3VXIs-8Rw-MjKujFttZG8,3438
 scout/server/blueprints/panels/templates/panels/panel_pdf_simple.html,sha256=6fcuiYcm_Gjh0klgQ9AfbpYUJAQrXm0YPAjFwrtmLHs,2677
-scout/server/blueprints/panels/templates/panels/panels.html,sha256=eR-f_Rh3ril-zVA4uBpOOblXm8LMEs3eirwpDQ-Ozrs,13422
+scout/server/blueprints/panels/templates/panels/panels.html,sha256=aRv4ckNsHZZO7w17fnvJbJrmXi1mrAMtEZTGvfhwygU,13978
 scout/server/blueprints/phenomodels/__init__.py,sha256=Kb1fqfCn-QsH5mz6hiuQ2DiC7icTClD4HLey6QN4GD4,34
 scout/server/blueprints/phenomodels/controllers.py,sha256=g5-BxlaHN7JBuQHEcOtQMUDEO9U9iy9HICaIaIEn3vk,11019
 scout/server/blueprints/phenomodels/forms.py,sha256=Z7dMIJml5xZ1cQV1jh_-IGVxhxk4lVhcUTvFa6ArbJo,740
@@ -587,27 +597,27 @@ scout/server/blueprints/public/static/ideograms/chromosome-Y.png,sha256=KlOsBLZY
 scout/server/blueprints/public/templates/public/index.html,sha256=kl_-1s4HXRGw_PWacRFHG3cHALBBMN54GJVBnAAZ7LE,3626
 scout/server/blueprints/variant/__init__.py,sha256=SlD8-Aoj9Jq9aVTJjtFfsu-0sUVfkzpiEXcH8z9q6dI,54
 scout/server/blueprints/variant/controllers.py,sha256=2XEBrvq4kXNA2Mj1G6GMfWHphEfgafDewoqFW32Q0PQ,25160
-scout/server/blueprints/variant/utils.py,sha256=3Tj2N6VCPMBcIk6gjDw8l6j2VYfoGugEW09hgxoFNY4,24042
+scout/server/blueprints/variant/utils.py,sha256=PpIWFiMgtEUIS8A8wD9-5yf_SB42tb1UGBpzYYdIOtw,22638
 scout/server/blueprints/variant/verification_controllers.py,sha256=eKzP222e7xuFOaQaI9MLOrD9RWtI8uGB1cJYbcXLzF0,10972
-scout/server/blueprints/variant/views.py,sha256=oM5zA90_DL8eS-gSa1eDRar47xjwzJw2VFx9XCB9hdQ,14711
+scout/server/blueprints/variant/views.py,sha256=jz5kFRCLhEVRQKFJtKmG0Nq4TX6ofEeyA9zPHE7b1FQ,14768
 scout/server/blueprints/variant/templates/variant/acmg.html,sha256=ubitRnQoADLLOptwMgsPLb1AXhwZgV1YlN504VaC2lY,7754
-scout/server/blueprints/variant/templates/variant/buttons.html,sha256=Sbw4jA6xvsx9yRr9b-5ZF6bce4tqNLFQff5FuWuz9mo,6797
+scout/server/blueprints/variant/templates/variant/buttons.html,sha256=lQ4inmrlpkb_SHm0KGM8kf7GCUH7TrtyI-yY78THsmE,7180
 scout/server/blueprints/variant/templates/variant/cancer-variant.html,sha256=1D9uLIgb06qfhcbl0wB5mRrgARVgfCJfRZhf4wEA2tc,13971
 scout/server/blueprints/variant/templates/variant/components.html,sha256=8sL51D-XR_XRrknZLfZLM4KWz9pHj1CpYsyR9EaAlw4,20863
 scout/server/blueprints/variant/templates/variant/gene_disease_relations.html,sha256=mvw7773Gww3AAOtASL61W5e5cYTc4uB8gJ2zr19NIXw,7283
 scout/server/blueprints/variant/templates/variant/rank_score_results.html,sha256=32RfBrpZ_J-1WYE01Bdd5IC9i1MAzXT7GF27OlElk94,2040
 scout/server/blueprints/variant/templates/variant/sanger.html,sha256=0kVnscTw3KUwjR4QOEuNJMOK9eADGEn9qGNtGx2ST7Y,4507
-scout/server/blueprints/variant/templates/variant/str-variant-reviewer.html,sha256=gusmku-14Zw44Zet7PiFWR4n0M4hdD4Qa6w_HbxWQ5A,2231
+scout/server/blueprints/variant/templates/variant/str-variant-reviewer.html,sha256=QETzTkzXhFBd7-20OrLMCd1QSgzOxeE7Lv_Iged5BB0,2220
 scout/server/blueprints/variant/templates/variant/sv-variant.html,sha256=Rn6lAteE2SR8omRRXWVrajcppghoF-tSR23mY4_6Sto,17184
 scout/server/blueprints/variant/templates/variant/tx_overview.html,sha256=turyCoOCCd_N80FakxXfIl7q_WViysz1fwx3j312_Lg,6737
-scout/server/blueprints/variant/templates/variant/utils.html,sha256=EPwtCxHKhtMD5DiBKTnuW0VjJa-b1j7ixPZ54eEW9Kc,21583
+scout/server/blueprints/variant/templates/variant/utils.html,sha256=wstxdK36MtW81MqsQtxbDQFDR7gmPba-kqVNFTVYfpo,21588
 scout/server/blueprints/variant/templates/variant/variant.html,sha256=bgO3kb4u45IrgCPUJrHT4paNDOQzcKx5dw0ZYbBmCsc,18914
 scout/server/blueprints/variant/templates/variant/variant_details.html,sha256=J-pF8LRXFnCxIbNfL7klTLj172rlpWF8PznO4ie9Igc,19921
 scout/server/blueprints/variants/__init__.py,sha256=W1KCz9kEbVlNO0o3NvLitYLQoP_3JSJ5KSjhpcjlUBQ,55
-scout/server/blueprints/variants/controllers.py,sha256=Yoa1tcSGU55AWZSS-7Xizl7HHXLKYzhRu-dqA5J1sAw,72654
-scout/server/blueprints/variants/forms.py,sha256=5BRl2mhiqjuOhsjWXDJjfX95im-NIMxKS-oSbeHiYuM,8944
+scout/server/blueprints/variants/controllers.py,sha256=DQeqtQtVX4p__AanxChWxWxdQ65_p5etSFQZEj_leDQ,72616
+scout/server/blueprints/variants/forms.py,sha256=w4Woeek6gpZfPM_9e1E_n-gpVvNxXPU_ria7cvP1HSo,10750
 scout/server/blueprints/variants/utils.py,sha256=ifFBoyigx0A5KPE4iz9NSpyuUeF1bElrb4ohQLD2GlU,919
-scout/server/blueprints/variants/views.py,sha256=E514mSGAQwV7wGnz8WFsT65uqfztlWcgGFCt4z_lEVU,28137
+scout/server/blueprints/variants/views.py,sha256=r2T3eLAG_qrZ2vl3Ar2k6K1KRB7J6z51x4olNVcQFYU,28645
 scout/server/blueprints/variants/static/form_scripts.js,sha256=o3GCboaesA9Sm1HgejS_yQwt0I-NTkvcl56jiBdLqZs,8319
 scout/server/blueprints/variants/templates/variants/cancer-sv-variants.html,sha256=Y7XQZjjrU_cJGU8EEGEF3QzTVvDfEVudFdygYExVxwI,7429
 scout/server/blueprints/variants/templates/variants/cancer-variants.html,sha256=bX9FLoufo72PBDoWp95DVLltxUrbLeuFmZQObP1oAlw,10132
@@ -617,13 +627,13 @@ scout/server/blueprints/variants/templates/variants/indicators.html,sha256=BX6Wg
 scout/server/blueprints/variants/templates/variants/mei-variants.html,sha256=0-wYjaiUByDduWMgmRS4AMg3IppPNtjZL1vvAdFuIPI,5994
 scout/server/blueprints/variants/templates/variants/str-variants.html,sha256=sMM6GiuOU8anACtxrSF6YETsuwWUbEQZyyWhl06ev20,10186
 scout/server/blueprints/variants/templates/variants/sv-variants.html,sha256=SgAdgIPdr7pd2TDB2PJlXOmSAjX4WUslfm4eu0cjIBI,6310
-scout/server/blueprints/variants/templates/variants/utils.html,sha256=2WriO5n0IGzVw4kvt1D_hz47TAkdxhHsgAfFnfO_sww,49231
+scout/server/blueprints/variants/templates/variants/utils.html,sha256=hK1BBqxvSljBLAGA8mZlEn1RUSXaJQcB-SB_jQviV3E,49371
 scout/server/blueprints/variants/templates/variants/variants.html,sha256=nfSZXVGmsjjUuRC-54G9UsNBMhlNjnvBafN34uL73tY,9333
 scout/server/extensions/__init__.py,sha256=tBhPKg0qc0HuZckWgj3UGexhmA7KQ-hlC50DqWx4UT4,1220
 scout/server/extensions/beacon_extension.py,sha256=YDXQQl5kFcsA4OFHDMVurIKLw_3Gl6yWfcy3lYHl9RE,9904
 scout/server/extensions/bionano_extension.py,sha256=0rWPLMSCRP8uK4_yozo6HTPR6V-oITF492vrGA3wSj0,7129
 scout/server/extensions/chanjo_extension.py,sha256=MEV8l-83yujOw6JK_qc3VILND3S60zZrK-CCrLYRQUQ,2281
-scout/server/extensions/clinvar_extension.py,sha256=e6rrpOnUs-rn3gGfiOQT4UlBRRXRLgot51G3WB44wrU,3746
+scout/server/extensions/clinvar_extension.py,sha256=w1fOzGKRhxmIlZkAqqd_rdGD49qE_nn-tgZsEMTrZNw,3870
 scout/server/extensions/gens_extension.py,sha256=KOF-pP4DiRVQkygthAq6XCHnZwAGHo1kjIxmvW7ItYI,1003
 scout/server/extensions/ldap_extension.py,sha256=nVgJ6YhSyvpg8J4bSYzJwoEvKhP0faWazt3Xk0ixE2U,2746
 scout/server/extensions/loqus_extension.py,sha256=uiqUXQ7Q7DCj6C20TKgL8yLu9DXov95vrJfhq0tvbTM,12602
@@ -636,10 +646,10 @@ scout/server/static/custom_images.js,sha256=IUVSlt6GJCXmE1RuSizSMOE89OcFAJnq-ZzA
 scout/server/static/favicon.ico,sha256=8aC2QonalUW-D62draMeiII4sZYQSp9BLGQnj-wRlt0,1469
 scout/server/static/humans.txt,sha256=UdqAR07_5LAWWfgH2Ty4RR8BhoHS1WXpx9euKtXqqhs,259
 scout/server/static/robots.txt,sha256=fFX0beQN4x3mzR3evnZjrOUYOTNkezYAwqMowTUpmxM,106
-scout/server/templates/bootstrap_global.html,sha256=6e09Qyn3pc5zbE82Gacyye9qL5cMbrfOebMSjU9rqqA,2894
+scout/server/templates/bootstrap_global.html,sha256=yPauZKUzPvDCj6LUrKnCtkYgn7fPt07-Letxqd-hLw8,2634
 scout/server/templates/layout.html,sha256=-uhRxFA89L0gocv8sPLcODUHmWLNuV6xsjB34Zjq-8o,4635
 scout/server/templates/report_base.html,sha256=PZOqFZRLtbe4PZ7lkVc9LP1O-yh7v3_EzOohRE9Ix4U,1252
-scout/server/templates/utils.html,sha256=aFxvkFYA_4S-LBkMGXFWbycLNFZ6QqtO1088bru3i9Y,12940
+scout/server/templates/utils.html,sha256=Wd-glkGqmfJeusnqi1fIjCBSgUflWh0V3MOAnr5V_MU,13000
 scout/server/translations/sv/LC_MESSAGES/messages.mo,sha256=eI53pCtlYj1MXduDicMZRxBhgOV_TlmMUpH7IhncgDY,4452
 scout/server/translations/sv/LC_MESSAGES/messages.po,sha256=Wp7Mx4LoiFNtzsV1tpAoWjMxYnq8SpfpU9a4XWJ7L6g,4531
 scout/update/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
@@ -661,9 +671,9 @@ scout/utils/md5.py,sha256=KkgdxOf7xbF9AF40ZjQKCgWaxFWJ9tp9RKjd8SU6IoA,649
 scout/utils/scout_requests.py,sha256=JjHOJW1XmenG05mNQ33kvOKq_IicveIfQMcPZeRcQdo,12856
 scout/utils/sort.py,sha256=1AcbeZ6vdt_UXM3BLDBa3aQmN4qxrqtskxwD19oBhvw,756
 scout/utils/track_resources.py,sha256=eUjSEe-Ff8BIb4BHPC_COkJocQO2PaWueiPz1GAuiwY,2614
-scout_browser-4.85.dist-info/LICENSE,sha256=TM1Y9Cqbwk55JVfxD-_bpGLtZQAeN9RovQlqHK6eOTY,1485
-scout_browser-4.85.dist-info/METADATA,sha256=-rqJW4SQ9_0iU08QcC2w8nFzgK57yYUDkafy1fBNxHQ,14260
-scout_browser-4.85.dist-info/WHEEL,sha256=GJ7t_kWBFywbagK5eo9IoUwLW6oyOeTKmQ-9iHFVNxQ,92
-scout_browser-4.85.dist-info/entry_points.txt,sha256=q_mxFwbMFTwXRDDIRVcqKram2ubMVmvs3CSNvZri1nY,45
-scout_browser-4.85.dist-info/top_level.txt,sha256=qM75h71bztMaLYsxn1up4c_n2rjc_ZnyaW6Q0K5uOXc,6
-scout_browser-4.85.dist-info/RECORD,,
+scout_browser-4.86.dist-info/LICENSE,sha256=TM1Y9Cqbwk55JVfxD-_bpGLtZQAeN9RovQlqHK6eOTY,1485
+scout_browser-4.86.dist-info/METADATA,sha256=LIrl5lLOrztC7-iyc2X-AAASuh6TvvWjA8Tvq09N4xg,14260
+scout_browser-4.86.dist-info/WHEEL,sha256=eOLhNAGa2EW3wWl_TU484h7q1UNgy0JXjjoqKoxAAQc,92
+scout_browser-4.86.dist-info/entry_points.txt,sha256=q_mxFwbMFTwXRDDIRVcqKram2ubMVmvs3CSNvZri1nY,45
+scout_browser-4.86.dist-info/top_level.txt,sha256=qM75h71bztMaLYsxn1up4c_n2rjc_ZnyaW6Q0K5uOXc,6
+scout_browser-4.86.dist-info/RECORD,,

{scout_browser-4.85.dist-info → scout_browser-4.86.dist-info}/WHEEL

@@ -1,5 +1,5 @@
 Wheel-Version: 1.0
-Generator: bdist_wheel (0.43.0)
+Generator: bdist_wheel (0.44.0)
 Root-Is-Purelib: true
 Tag: py3-none-any