scout-browser 4.82.1__py3-none-any.whl → 4.83__py3-none-any.whl

{scout_browser-4.82.1.dist-info → scout_browser-4.83.dist-info}/RECORD

@@ -1,33 +1,33 @@
 scout/__init__.py,sha256=Z4liXvmEcLkC67ElsWvYHfemPKdWgWI5O6MB6XlDM8M,232
-scout/__version__.py,sha256=IIT6NV0FftHz0d-F_BFcONgDpXbfT_OzWph7we8o1qg,23
+scout/__version__.py,sha256=Kv_DfPRkoZkG-PQ48-r24xj_8hLgmLZ8dm27gihcjb4,21
 scout/adapter/__init__.py,sha256=-iX_hx2NI1EMAqX0pMd5_90Nnd9uvIMxv9EbefYBzsc,86
-scout/adapter/client.py,sha256=0VR5LRPEqZg_bAxQte1RGMxV8BSiQordbPs57PaZTlI,1512
+scout/adapter/client.py,sha256=IuajRsEwTG41ZP14X09Q1Cj94zIgmIvUtlXfcAFn0EA,1513
 scout/adapter/mongo/__init__.py,sha256=NdHYCUXWUAuX5cUS3-6HCws2hW9uoGep8i0SC-oJd3k,31
 scout/adapter/mongo/acmg.py,sha256=v2Zuw-6APVmcnBnNXa18WJEu2vj5GUhZNiKMkruJsBI,4170
-scout/adapter/mongo/base.py,sha256=IQ4lZw221SD0Ods51k9o-Z_W86vqQd8sDEuv4FSaOBc,4207
-scout/adapter/mongo/case.py,sha256=UUcPmpDCwXlbdb-evfyAkAPrUO35DBGXEZkf97kK63s,59699
-scout/adapter/mongo/case_events.py,sha256=jSejlOxU_qx7pphvkfQuVTpz7Zjwx4H41nFhdPav2Uo,23560
+scout/adapter/mongo/base.py,sha256=6sN_KofLZS47CpxAnA0x2zhhc0k09riiKOAgaAaDzSI,4206
+scout/adapter/mongo/case.py,sha256=guQ_Jd8gLDl4w7cA3dtAI7RL_F-v2nzwNohF6g-M5qo,59063
+scout/adapter/mongo/case_events.py,sha256=slHR4XJF9vRuEbuInJKMMAImLF8m7tHWVfGP42fbXr0,26859
 scout/adapter/mongo/case_group.py,sha256=tG8DuO0rNYepV4k0yCGPqssODErc0HMsAypg3mfhcV0,1575
 scout/adapter/mongo/clinvar.py,sha256=tczC39O3DFDkYgjt2RDgkkG-x1Mvx_99Hw7dAbIQ5gk,19838
 scout/adapter/mongo/cytoband.py,sha256=pOWMvOn7lLATk_ShuzRWnGa3xRyILGRJRxh4VONCw7k,2082
 scout/adapter/mongo/disease_terms.py,sha256=4qcQRLuP5xn_RkB2RlNtwCrONmDuWwdlngZrj87BUEo,5637
 scout/adapter/mongo/event.py,sha256=NnURFhS5odOXk7So_gGMHmALPAJM0PWzESI4FC06azE,19842
 scout/adapter/mongo/filter.py,sha256=GoPqMDqteE1pDiVfpUP8xxT_1A8s7S4ByITCJGdesok,7570
-scout/adapter/mongo/hgnc.py,sha256=sQZtHEe8q42HVJ9F7uIwE2oY5dJUS_TWAQ6WUqLCxC0,15980
+scout/adapter/mongo/hgnc.py,sha256=qklk7rKO8TCklh6XvjgWXiB-BZ9Vkp-SFRM1-xgfX1s,16407
 scout/adapter/mongo/hpo.py,sha256=ps2Pix3sGeea7DenboZVP5j7Vh9WAgX3-sgpbAj0Eck,6871
 scout/adapter/mongo/index.py,sha256=TZPVv6xBWsEtZpBUWp5uhjuPjQMfVss4lZZju49g1Lw,3577
-scout/adapter/mongo/institute.py,sha256=dTiMZSXvJYU567_goyIs-ZZVqMSZDxTtFEbwE6xE53g,7120
+scout/adapter/mongo/institute.py,sha256=GQmMKb_VzsvWwadp6gXHlSSpcG5ovF1ozdTzvpTFLpA,7025
 scout/adapter/mongo/managed_variant.py,sha256=YFdnIhNVIawVhmlOxHOpe6sJyso0FCGdlXOXyhSWol8,8373
 scout/adapter/mongo/matchmaker.py,sha256=amTvFOlUbrt1RmecY_8hPY6bO3j79lc2UbmzlCQcRuk,6378
-scout/adapter/mongo/panel.py,sha256=KoSHKbYBPzA_-NugGKwHDzPTHO9RZuj7U4oxKvp6_LU,20916
+scout/adapter/mongo/panel.py,sha256=KRerlJzlm-NZRihDMJzOiD9ECYqqsEkXxkbcLADL0mI,20921
 scout/adapter/mongo/phenomodel.py,sha256=cypSS8YRzu98Bf1kC0orfrLNn_ZQSYCK8e4mNR5PaPY,2572
 scout/adapter/mongo/query.py,sha256=Mpl8wxfmxFbue5Mixq1jCQcImCPg9D5nf6jCli2WDTM,32653
 scout/adapter/mongo/rank_model.py,sha256=wvDNI4OLf-f7ZYZ_Q_6qi0myxOJCNNJR_-2-_0u2K2M,5712
 scout/adapter/mongo/transcript.py,sha256=3U1qtyxZ1DnrzdBJm_emJXISMYFKJuX_zAKynUt8NMY,7417
 scout/adapter/mongo/user.py,sha256=QoQnRWqi_dV3ZwGzBonEU6Ap9TgMDf2x_C5UIqG0pa0,2569
-scout/adapter/mongo/variant.py,sha256=f3yU3Wu5ZTarDsUs314kjcM-UAFdkPfSjPjyKsrMYg8,34143
+scout/adapter/mongo/variant.py,sha256=wsEwmgD6MjThBqfN4LvdET2bVesF0SQ7ENNP4AfOFEo,34191
 scout/adapter/mongo/variant_events.py,sha256=LjUtxJLo3wGBjMI55wPs7sNPeDLq9POw6fgz0dzeuFM,31842
-scout/adapter/mongo/variant_loader.py,sha256=hMkRq5Bnk9DLEExV_IXOSY7FUzlArkZ0PBiytRqJG4E,27587
+scout/adapter/mongo/variant_loader.py,sha256=FkW5POGpgRoSfH129VpHxQqII_2OKG4ZChlc45fBcpw,28300
 scout/build/__init__.py,sha256=GUWEaXTpwsJil_KtrXBQJpZIwCQFSgo8NlK49R9IkA8,521
 scout/build/acmg.py,sha256=M21MrrP_dtEyOuu6t-jBDdaqYcHPMLcwJlt9fHG2ycE,1523
 scout/build/case.py,sha256=rSsY1ePm8Esn_heE5bU6z2LkKmPhJNiwnB1IeYzKwnU,11057
@@ -50,7 +50,7 @@ scout/build/variant/genotype.py,sha256=QDTZWFB8ix9Zd1m9UPWgT008i6rC7gT-uFzRr9Gni
 scout/build/variant/transcript.py,sha256=hf_led1kdT3hVEwtHdORhBSk6a6o_zEDJ0z4ZF8IlFA,1205
 scout/build/variant/variant.py,sha256=GJBRoAb-Ul9_tR1tUmnNpS9lpJOlLV0K4mEid98jS58,18427
 scout/commands/__init__.py,sha256=VrenBj1daCAnIsBZtvdbv1SuxmODT_TTY8YcxWItrXE,22
-scout/commands/base.py,sha256=2Hhig-X598AVnxQz9A2UObRQD45jFV0MtdNeUn3B7Hw,4609
+scout/commands/base.py,sha256=WmUko96zsPbC3cUIezy0CAOOGKBFU-BoW-BPAhLORCE,4610
 scout/commands/convert.py,sha256=T5dkFjRKSTf7dBS9uKIW4wEmdL13vKzKTLRy4nvf6Vg,1090
 scout/commands/index_command.py,sha256=QTBU7LT2YldDBXuWCVdTH5FlQgRB6BCdiYoFrPo08NU,1149
 scout/commands/serve.py,sha256=fImJrgMBYQTD18xODjGqN6NgXjTe8seI_awd9vF04rU,1564
@@ -96,12 +96,12 @@ scout/commands/setup/__init__.py,sha256=uiuizwirbfLqp93K4__b982obk1stkzwpvXHi51O
 scout/commands/setup/setup_scout.py,sha256=Pj4Xmm-NsTykPpUkKu_cxDS42rNZOWlEdVFcnaCxDO4,9254
 scout/commands/update/__init__.py,sha256=yKNjRTVFsSTko8T7znfMqSI_HsGPN2-z1c0twkwO5uE,25
 scout/commands/update/base.py,sha256=XxxBGzn9JdFfk39jsZbU5eAZhE41MLq73WwLqa_u4Rc,1179
-scout/commands/update/case.py,sha256=j1NmFe4TD2Gb6LU7pWnIA_TaBwWgS1FWkYs8LbRzBO0,5782
+scout/commands/update/case.py,sha256=q7gjMS4izlrV0LghfTM9GiJeXI0K4qtmO62TqfTqizw,5822
 scout/commands/update/compounds.py,sha256=vwCtb6045tGovKWHqY_uL8w1l9rZ_Hxlt0gUU0cKXUk,753
 scout/commands/update/disease.py,sha256=AajPLoEtd9YeU3jf7S7ZQRs3_o1H3GSxHsST_sVaIZQ,3846
 scout/commands/update/genes.py,sha256=ngzdPodG9qosQYOMKE9x-rMjniZU3T1d5vmuMrduKJY,7082
 scout/commands/update/hpo.py,sha256=eyCuUlUwPmyP0oLh1olXhdqInlUXDdLe8ylgTlHWi-g,1339
-scout/commands/update/individual.py,sha256=0qtXbrMFvoSrwPHVAJvx9asbFC6Oo-qc7mgECMNJcYk,3792
+scout/commands/update/individual.py,sha256=lwVQcKCZj5VxUSO8CcBUsvVRl3ZHgJVe4AE9pcJS7ys,4007
 scout/commands/update/institute.py,sha256=ms8mmTGfCXqxeh_vSB1cdNDGrdHoSSgh9ryhB5GrJQc,1727
 scout/commands/update/omim.py,sha256=ttPivJhFtruG4jXNd6q82Wtf7ajjGsXUC8NkmdZ7q9I,2308
 scout/commands/update/panel.py,sha256=990shZ15k5pwHUkd767o8oQ5iqVIpgRA7N_9yv1_eqc,2912
@@ -129,7 +129,7 @@ scout/constants/case_tags.py,sha256=Pr9Go_I8udRnrdcRcZdu4swS0Jpdwf8hUdDVGR6d9yY,
 scout/constants/clinvar.py,sha256=TzbnbUsSBML3k1SBVIL3kQh5Hwjq5kqKhtQOOEkfHwU,5586
 scout/constants/clnsig.py,sha256=2u_avIzWO_IPJGcTOoSB7_xqgu5JBl_zZZfT8UVpY90,1359
 scout/constants/disease_parsing.py,sha256=m10iPVzdTsdx7v9ZWvdLjlBrQKR_uyMeJwPbokO9SHY,688
-scout/constants/file_types.py,sha256=OQ3g1uo4jvhiLlPV1MBoqctWGc4YrS2wnGS6PoflIAA,1016
+scout/constants/file_types.py,sha256=kJbG1zyHb8zS0KMRbbU7XVigQLEZNzUmCLFHmI4Zk_k,1298
 scout/constants/filters.py,sha256=8nRRb7_17G4P8zMgJ7qrK4NAAuGbPLl-pU5GPP3L4eE,889
 scout/constants/gene_tags.py,sha256=tdzDh6ukJRtHiC8X5YkldijZCS0KrEeXj95sLNlqxuc,3852
 scout/constants/igv_tracks.py,sha256=3-3VzFpCTfuhbEBAitbpY2lQRYXYf-poya3DXs0g9yE,4500
@@ -359,18 +359,17 @@ scout/export/gene.py,sha256=6DTJuZUwbsBe3oyKhfov7ZmqM8DbShl5f1IAeZN736k,263
 scout/export/panel.py,sha256=sLSOiePx7QguJUXddsNNgobR-90JI1HFxMV0raZlNzo,5244
 scout/export/transcript.py,sha256=wprCSxGDo2fittTd3IkIqUPnhFj4h4oSNFuyCO9Uyis,400
 scout/export/variant.py,sha256=sxe3-tnVs9cVRtK6I01oo9-hM0DBw0w1bGgvvv2FWUs,7358
-scout/load/__init__.py,sha256=hLnUX8QxSUkvd3XATwPRym7eherPdJ5fSgti6asSOWU,240
-scout/load/all.py,sha256=ERH61iWhEYzd2J7m5TOwNsJwjklfCkeFMveDVBD95cQ,3608
-scout/load/case.py,sha256=2iIUj36Z2XtIPvijhCIlR-CMvYqzcjWKK_3XLTyKC5I,1066
+scout/load/__init__.py,sha256=d9cGZ9jMOfnmd9wkyspRFE2m5nxJt8MnpN-8PDlu-7M,212
+scout/load/all.py,sha256=BvamX_hFNb-rM6gc3APAFWvWDGni2CBhJ_ti0HkNRlI,3548
 scout/load/cytoband.py,sha256=vPU8oQm31WMcnaG9QG2le9pe_8g70O1S0q1Ljj3Ce84,1356
 scout/load/disease.py,sha256=eZ-RDTtfO6-YCk0tCHuhCWxw1FSCwHNZEemWXCC4P_w,2747
 scout/load/exon.py,sha256=ONaWJ9EfbhGV8KGXxwlq_jYCoU-JkBpv4r9zDaCjtls,2070
 scout/load/hgnc_gene.py,sha256=rn2vHuECg_LWRzTE9IE1szp6U9HzxX2P0C89kRNNJ5U,3439
 scout/load/hpo.py,sha256=ZWYjV9j6OfpI-ZZuhTQVEs_xgLa7ST2KuvYLW6ku0PY,2474
 scout/load/institute.py,sha256=etmZ0CZRHOVi3f9R-wn5BK1pZPhtZwq2QYbh2RXXxDc,625
-scout/load/panel.py,sha256=UrQQFAn1LtbOe-rAnOShvUMOBMU6jddaUJRvhJmBD90,9165
+scout/load/panel.py,sha256=JQqkyUdpvhFnW81n8Sq-iPahDcm1hGBzLfrwUcVqt4k,9446
 scout/load/report.py,sha256=TJvblks6Dp5-UDflWRTa8b3fe-A4bT4QnWT2yZLhfLA,820
-scout/load/setup.py,sha256=z72iVbmGk7T5tV3NJwFp25rX_vVdCQ8LVTLP_syQNkw,8193
+scout/load/setup.py,sha256=QoT5WZgzTT5c9b_lgkFUXlyRYDpHboJHzdcvEcObbds,8194
 scout/load/transcript.py,sha256=mk0Da7GWwqLVRp2xRD9mlzqaomH9R-TL2aKCJx4fEA8,4632
 scout/log/__init__.py,sha256=ezc9URKnFoELUif9ZNqG6vNzXPOccGuDyzqoBngSIZo,63
 scout/log/handlers.py,sha256=nwcSeqwtcesiIiEnpVOm7vTugDTOBodP6apm9Z1LIqk,1350
@@ -389,15 +388,15 @@ scout/models/phenotype_term.py,sha256=U07Pg5PCsOAu-g_HXbyifVy3sK1QyzDYqH3D4qfbo7
 scout/models/user.py,sha256=oercrjpf9fLomqAcN0Fv1BL_XPjOrS_vchURo0RP7es,1134
 scout/models/case/__init__.py,sha256=Sqczn7Wm9KYZtPGAHCvwX_6j9vlaK-0myJtSDlS-448,121
 scout/models/case/case.py,sha256=7r-lR5jr3hNyM0jo-KxQDY7CLjtgtzu26PHOalx1s68,5213
-scout/models/case/case_loading_models.py,sha256=D1WYdkezb71MV-f0UM9OVjiS53zHQuS0ArS704508rs,20187
+scout/models/case/case_loading_models.py,sha256=fvTWd90_5n-630y8tbZ3nHiarWgrc9x74uvnqW-oHy4,20112
 scout/models/variant/__init__.py,sha256=H-IZ2hSTSVS28S8FZzA8j2Cyu1PHQFXyMWJFtCucPAk,40
 scout/models/variant/gene.py,sha256=98CG_JcAklGGFIrUulf1_olQalV65kXQO-gOf7VQZ0A,1095
 scout/models/variant/transcript.py,sha256=rfflEbTs7Bn4HDENqrxtGopQ_0HKnrVLLyBcrj4NpwM,1720
 scout/models/variant/variant.py,sha256=zdSOqI8GYJWlQdbucC68M_5iWS79ar29twGvBunCuOQ,4424
 scout/parse/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-scout/parse/case.py,sha256=-swb-XBe6AOAzRBXob0VBQhotInZ9cg9L4sspIwS5zc,11653
+scout/parse/case.py,sha256=-sGKWYWcskMagrDpEoeCIAJacwCR2feC8SwWvT0FJVw,11577
 scout/parse/cytoband.py,sha256=7flY3b_wegupHHBLRcs4KyM1ns-uzuTfVHm4CycnupE,1055
-scout/parse/disease_terms.py,sha256=iYX0W32C6rQhYF7guIbtiqV4M8gMZv3Abt0teK5_2O4,7436
+scout/parse/disease_terms.py,sha256=-JIm4GWEvqg9nmWehK18mlIQ-N5nZhT2u5pbfDRXoxE,7437
 scout/parse/ensembl.py,sha256=nnqOVtLgWh9wbtHnzGIidnNIvRoOp2bTct5OuAFSSB0,10618
 scout/parse/exac.py,sha256=VbahYYoMl8RkffChAhKnrVOS6fzQdDKRkPMPZnKnZcQ,1972
 scout/parse/hgnc.py,sha256=dSV-gIHv6n1wwPc_zpJpuh7r3o1LZ86JVdRZGmJlewI,3189
@@ -405,9 +404,9 @@ scout/parse/hpo_mappings.py,sha256=UJY38iLmpJFnZ9FuRaNIGhNQnTx7_WASxr9mlEnhvHE,2
 scout/parse/hpo_terms.py,sha256=ZJCKFD0rV3jiCuoI8Gm1WNTiaOSRRoKOhZ1bYnqwY6I,5732
 scout/parse/matchmaker.py,sha256=5e9NCFQ2rKXNCJTW-ThXoEylEPl3H41cCfQzPATQ2QM,9524
 scout/parse/mitodel.py,sha256=3uvEXI9v9wIw97NUL7gqLLxHay0mpQpDgKaIxUbIyrE,803
-scout/parse/omim.py,sha256=zhrX4qWJgMupOVCs1pvS549OVSOwksHedfB8ljOTA0I,12463
+scout/parse/omim.py,sha256=oFnf1CpEqX2imBvOla1A-3qM6vXpY4B_lc4cgiTSFXc,12464
 scout/parse/orpha.py,sha256=fD-d1W6Y_yUwrpsAxsIFHoUcOUafovItjev4CKw52p0,4391
-scout/parse/panel.py,sha256=GtBp299I17SjssE1oSsUvgxQyZLyPmCVgxPjMtQsdMU,12433
+scout/parse/panel.py,sha256=4HYjokWh2sF-effLQxPf4ZzRHsf9grqF1Z9f-HAaRmk,13153
 scout/parse/peddy.py,sha256=uM49GaZMtr8waCsZDvCHDS5JDQ43JUlhdWh9C7f7ZvU,5418
 scout/parse/smn.py,sha256=iOK1N8iYm9dFigsKtWq0Y0ZCa1CH29s9zeR_tH0bPuc,1153
 scout/parse/variant/__init__.py,sha256=5yqCQlAYMqosRabdipFUXqopSMBN4X6jwpNiKiYKlsE,35
@@ -427,47 +426,47 @@ scout/parse/variant/models.py,sha256=NrqLXu7PxpIQ0NmjGRIEk4vS_y972VPiexLsZCZpOn0
 scout/parse/variant/rank_score.py,sha256=ipFxCTsQHMqObUbzLJlDAKUb3_lk_sqEYzH52myZVVk,486
 scout/parse/variant/transcript.py,sha256=h0-IPDj4Th5aNijyhR1jrwnPe_YZx5QVajqn9ttxE98,13340
 scout/parse/variant/variant.py,sha256=hKsE2b97hRuUpE948VHL5WOL81n-_RKpZBdRGOHaV1A,23759
-scout/resources/__init__.py,sha256=MNY3UdgbvOGoVnwGQly2HyOtMfkdPXqnN-sbe_XrOJ8,337
+scout/resources/__init__.py,sha256=i9UVG651subgmOZ-Gm-JKPsXBqr5-50QUDfSpbwmwIw,443
 scout/resources/cytoBand_hg19.txt.gz,sha256=pheUD5b9NlVuvwwnbKwDc2FG80Yg70gvPxVXP-Sqd3k,6147
 scout/resources/cytoBand_hg38.txt.gz,sha256=sqSVmvPlktQ-0hTiTapJM-5UgyV6xDoYZuTF0kPuETs,6105
 scout/server/__init__.py,sha256=iwhKnzeBJLKxpRVjvzwiRE63_zNpIBfaKLITauVph-0,24
-scout/server/app.py,sha256=oM1rdghv5fQ5Wy46SRjeN9fLl2vk9ad6C3LtF58q_DA,11995
+scout/server/app.py,sha256=H-0MXcqyP897No1bRzETR1m9vUq7Up1jDsVRwdTG9qU,10394
 scout/server/auto.py,sha256=8B6GwfOaUChkTLuLgYQDFMWlxGuHkEegF1argH2G2Ik,401
-scout/server/config.py,sha256=Ld9Vznr9cyss-PS8Av1OH4H96sDpzf8ZU3aWTNjTeqo,5228
+scout/server/config.py,sha256=5dIxQ2Fowh5HUpRRmDTAnbAfzAbXrUdmKKzJ2JrccTw,5598
 scout/server/links.py,sha256=TVAyn4_vvKpiZjIEIMdbNZReNrCRgOfvV8ZHCqlgWy0,26996
-scout/server/utils.py,sha256=u_ZzkjPz2Hz1kzZGGjCjzQvjBJAOPtlSu_tNJFII8L0,12021
+scout/server/utils.py,sha256=t9wRs2L2NojrlFeYHtxpIiebU5RljqRCjV7-sut0cT4,12505
 scout/server/blueprints/__init__.py,sha256=iwhKnzeBJLKxpRVjvzwiRE63_zNpIBfaKLITauVph-0,24
 scout/server/blueprints/alignviewers/__init__.py,sha256=XMVed2ekVUAvroqENDHSr2pwM8otqau8ZA-rbH1T2U8,59
-scout/server/blueprints/alignviewers/controllers.py,sha256=05_0kPA3mCN981Od-MtY3g8Jfk3nc61FSjYwNVUPP3U,12285
+scout/server/blueprints/alignviewers/controllers.py,sha256=GN7QrwbG2rj3HIArTqHTw0QH4jLCY_NhNGUwrMU4D1M,12278
 scout/server/blueprints/alignviewers/partial.py,sha256=9hpI00yhvZZCcPVUHlVDp488r1j7vYU5YDXYA6OkWQM,2005
-scout/server/blueprints/alignviewers/views.py,sha256=cnCg3fLGMWnOt5VZuQX82s7oBDbERe2MT0ip99jG7_s,5085
+scout/server/blueprints/alignviewers/views.py,sha256=IHsi7vNdBaTnqxo2IzD-kn9BNES0eqLMy5kWOeKNhRM,4733
 scout/server/blueprints/alignviewers/templates/alignviewers/igv_sashimi_viewer.html,sha256=2SCRN7lNAjdQWx3hB6avDPZ4lwfE4tgM4ksUS_SZQok,5219
-scout/server/blueprints/alignviewers/templates/alignviewers/igv_viewer.html,sha256=PTj6pn_f3sCdfhyJlKlrGS6Qe0UnEVj__Q31WZPsEhQ,6426
+scout/server/blueprints/alignviewers/templates/alignviewers/igv_viewer.html,sha256=Wmu2EODYZXa-WGNjAMkGE4uOu7t4MrePAKXumtYSD_g,7013
 scout/server/blueprints/alignviewers/templates/alignviewers/utils.html,sha256=ni4V7PqM0KQbDv1jwE9dBCc1oqyP3frGqv_uTn33FPg,206
 scout/server/blueprints/api/__init__.py,sha256=HR6HjS7ot1K_8Lt5eQdNT154z_FCdHGSigy8r2LpNCI,26
 scout/server/blueprints/api/views.py,sha256=pbl78wfhrm1T8JmiJDYF3BbTbfFrlF-hQRbuv2GWI0s,3729
 scout/server/blueprints/cases/__init__.py,sha256=_c17kPFITFYcIVphF4V9bf0PZBer8bU3rtVWQnljKDU,52
-scout/server/blueprints/cases/controllers.py,sha256=om7TPqsb2ZUGTAmuicp_peplZ1ujBPMUhwu_NYL7nuQ,54180
-scout/server/blueprints/cases/views.py,sha256=0MikCLSJUkQBbT3vNIAWefD57_6lZ4302Zx52LMygB8,42685
+scout/server/blueprints/cases/controllers.py,sha256=Hc_A59cGCByo-7mMqFuLU21U5eBVAI_ktObhpFC5PeU,54195
+scout/server/blueprints/cases/views.py,sha256=ZfuDfkcOiw7PHUr68mowJyYxUb6_gQObR488mhP6l78,42841
 scout/server/blueprints/cases/static/case_images.js,sha256=pb_gG7DNQc-1lADqSII8YvjBwmHyeQWYVtuu2jyrTlU,14997
 scout/server/blueprints/cases/static/case_styles.css,sha256=2Pgc8pFf9DR5HM1sTdAjaRWhjL-bK5bsQnLpH54HZak,541
 scout/server/blueprints/cases/static/edit_pedigree.js,sha256=ntC5fie7SsOYJau8qkke1UHxjiYWY_gBzWcIkGpdJUA,2978
 scout/server/blueprints/cases/static/madeline.js,sha256=KHxKMBVlYVJODNu5QkY9hhsGkDJNoaCoCZZ0DRu0YN0,1175
-scout/server/blueprints/cases/templates/cases/case.html,sha256=4u3XfrgcV1cZFWxQ5vmKJdWV-gEmnCr9SdP_rrUNt6o,35110
-scout/server/blueprints/cases/templates/cases/case_bionano.html,sha256=kRnhlflW80f4dXZeWh0CM9eM7Azmst64vvljxoLLozw,6774
-scout/server/blueprints/cases/templates/cases/case_report.html,sha256=PyO3EhRFYTdUybXXYNnd2r0jpFKIFRWnrRDEAEOJuN0,63461
-scout/server/blueprints/cases/templates/cases/case_sma.html,sha256=9kxXy6PHsSsou9sJOb0-xFoPAjqP9XBonj_wt_-9Cgw,5356
+scout/server/blueprints/cases/templates/cases/case.html,sha256=d_H1xh_3J4UlgritLCd41T9tpA32bBSfdRVtNlE6PkU,36552
+scout/server/blueprints/cases/templates/cases/case_bionano.html,sha256=PLoRv7hDJcHwxhi-0hC9fQSZc7V_aUYHBhhQqcn_2G8,5946
+scout/server/blueprints/cases/templates/cases/case_report.html,sha256=1tosH5xEl6CCZ1P6qlR5OKvWbAC5z3ewKL_JGdgPMBM,63635
+scout/server/blueprints/cases/templates/cases/case_sma.html,sha256=SAcElb4kH05mkPdEdaEbed-vbgQQGfxioCoNZsHljDc,4962
 scout/server/blueprints/cases/templates/cases/case_tabular_view.html,sha256=ko-LDUKmIoTazMZ2nFWvPEZsgObU07RwqIkDYFjokoY,4317
 scout/server/blueprints/cases/templates/cases/chanjo2_form.html,sha256=5Wmk7DM8LI3MynqzxeTzAr_EoEBwVVo31djcI5ZlTdo,2164
-scout/server/blueprints/cases/templates/cases/collapsible_actionbar.html,sha256=5CEHrjCXLS4VVqZSGOob0SNKxjyhg2f0oy7r2f64TK0,29252
+scout/server/blueprints/cases/templates/cases/collapsible_actionbar.html,sha256=tU7vorWKg3rdcDCMDyEaIBL5gGcTv8OvmKO9XRoc2mQ,29247
 scout/server/blueprints/cases/templates/cases/diseases.html,sha256=ETTQI0Nrl_v86NoX9mFZcvWD-qM1IJoqPmHPWn__Grw,1677
 scout/server/blueprints/cases/templates/cases/gene_panel.html,sha256=fR2fCb5A_dBUTTyI4GfwARtOC6k9LeFunx8flbb6qko,12309
 scout/server/blueprints/cases/templates/cases/index.html,sha256=oUmjFyUvwP4yo21CxcWy-6eepMFI65hpznMEpSEqKfM,1207
-scout/server/blueprints/cases/templates/cases/individuals_table.html,sha256=Y_OeIsEnLe_0_AzqgZdO4KMyoQ94auRLnVboLgBUPW8,11861
+scout/server/blueprints/cases/templates/cases/individuals_table.html,sha256=DXE7gE0f81B5CxCV1e5bqWv27_HS-9-8nc0pcFkMoOg,11497
 scout/server/blueprints/cases/templates/cases/institutes_sidebar.html,sha256=u0oPGHJ0ipZ1LkjHkbwlWfkUWc1h6XH1nh3tkbX17z0,4546
 scout/server/blueprints/cases/templates/cases/matchmaker.html,sha256=1vwGBhM4HgvRMlO1foKBAwV-Wfvfs1MRvzteOETCZeM,13142
-scout/server/blueprints/cases/templates/cases/phenotype.html,sha256=38BIwPzTgv5_9BLaTi8beafU2fOrVIfnlV-s88WAx3k,15982
-scout/server/blueprints/cases/templates/cases/utils.html,sha256=8kBXaLRqqNxRW2zVmkhIlV9N9kAJNTkwi0ASJOdMG3Q,34332
+scout/server/blueprints/cases/templates/cases/phenotype.html,sha256=kBHD13SjBUGz0b79cQ2rfgdx3JPyJGDR38kscGZJai0,16120
+scout/server/blueprints/cases/templates/cases/utils.html,sha256=GbcR0LXW5exdlmZa4fpJ81aEtgN505XqOO29LNJsd0A,34914
 scout/server/blueprints/clinvar/__init__.py,sha256=BV3aH2AbiA2WWrUEMbGd0H9MefFd2eTsRE9ShywbzpI,30
 scout/server/blueprints/clinvar/controllers.py,sha256=TEOdUTVYI-I_lzts0F3M_TFPMkeeweWIUxWug5HUhDw,24059
 scout/server/blueprints/clinvar/form.py,sha256=d0EBJouYsk-kIpGtAr_SfNCyLoBNchfLt25uFR9HxO0,5155
@@ -587,14 +586,14 @@ scout/server/blueprints/public/static/ideograms/chromosome-X.png,sha256=Dj7npcW_
 scout/server/blueprints/public/static/ideograms/chromosome-Y.png,sha256=KlOsBLZYFVHRvXvTioT-XE57zSWoYeIwIEXo_rzLBR0,1524
 scout/server/blueprints/public/templates/public/index.html,sha256=kl_-1s4HXRGw_PWacRFHG3cHALBBMN54GJVBnAAZ7LE,3626
 scout/server/blueprints/variant/__init__.py,sha256=SlD8-Aoj9Jq9aVTJjtFfsu-0sUVfkzpiEXcH8z9q6dI,54
-scout/server/blueprints/variant/controllers.py,sha256=FmpFXkc1AB7DdfH9SaYpZidZYsb_9b7hG44guUARNkw,25482
+scout/server/blueprints/variant/controllers.py,sha256=xf-UEkSiQrZLPKmwLjruBlI7X2SZ01WmQHrorLoFmPY,25524
 scout/server/blueprints/variant/utils.py,sha256=3Tj2N6VCPMBcIk6gjDw8l6j2VYfoGugEW09hgxoFNY4,24042
 scout/server/blueprints/variant/verification_controllers.py,sha256=eKzP222e7xuFOaQaI9MLOrD9RWtI8uGB1cJYbcXLzF0,10972
-scout/server/blueprints/variant/views.py,sha256=YQ6BXshrJDbPkPXPIwt_JtEqrbgfpzZPXqR4dsSRBt4,14610
-scout/server/blueprints/variant/templates/variant/acmg.html,sha256=i_4LFecWHZSdStw9VWDFjgNcGuDm-XX4VLCyZEYBopY,7315
+scout/server/blueprints/variant/views.py,sha256=oM5zA90_DL8eS-gSa1eDRar47xjwzJw2VFx9XCB9hdQ,14711
+scout/server/blueprints/variant/templates/variant/acmg.html,sha256=ubitRnQoADLLOptwMgsPLb1AXhwZgV1YlN504VaC2lY,7754
 scout/server/blueprints/variant/templates/variant/buttons.html,sha256=Sbw4jA6xvsx9yRr9b-5ZF6bce4tqNLFQff5FuWuz9mo,6797
 scout/server/blueprints/variant/templates/variant/cancer-variant.html,sha256=1D9uLIgb06qfhcbl0wB5mRrgARVgfCJfRZhf4wEA2tc,13971
-scout/server/blueprints/variant/templates/variant/components.html,sha256=vFMncA2ths7ggwIWkQLfyHAp-yIK4-0L5LcLMnnYRBc,20520
+scout/server/blueprints/variant/templates/variant/components.html,sha256=8sL51D-XR_XRrknZLfZLM4KWz9pHj1CpYsyR9EaAlw4,20863
 scout/server/blueprints/variant/templates/variant/gene_disease_relations.html,sha256=mvw7773Gww3AAOtASL61W5e5cYTc4uB8gJ2zr19NIXw,7283
 scout/server/blueprints/variant/templates/variant/rank_score_results.html,sha256=32RfBrpZ_J-1WYE01Bdd5IC9i1MAzXT7GF27OlElk94,2040
 scout/server/blueprints/variant/templates/variant/sanger.html,sha256=0kVnscTw3KUwjR4QOEuNJMOK9eADGEn9qGNtGx2ST7Y,4507
@@ -605,10 +604,10 @@ scout/server/blueprints/variant/templates/variant/utils.html,sha256=EPwtCxHKhtMD
 scout/server/blueprints/variant/templates/variant/variant.html,sha256=bgO3kb4u45IrgCPUJrHT4paNDOQzcKx5dw0ZYbBmCsc,18914
 scout/server/blueprints/variant/templates/variant/variant_details.html,sha256=J-pF8LRXFnCxIbNfL7klTLj172rlpWF8PznO4ie9Igc,19921
 scout/server/blueprints/variants/__init__.py,sha256=W1KCz9kEbVlNO0o3NvLitYLQoP_3JSJ5KSjhpcjlUBQ,55
-scout/server/blueprints/variants/controllers.py,sha256=7MWNdEHW-LH2yr317VRYiezNprXbltF0x5JxqCJQ4gQ,73067
+scout/server/blueprints/variants/controllers.py,sha256=FbDMCbaqyCVjogBk5cxrdCPafqulDL-_GjHqmS13B6g,73075
 scout/server/blueprints/variants/forms.py,sha256=5BRl2mhiqjuOhsjWXDJjfX95im-NIMxKS-oSbeHiYuM,8944
 scout/server/blueprints/variants/utils.py,sha256=ifFBoyigx0A5KPE4iz9NSpyuUeF1bElrb4ohQLD2GlU,919
-scout/server/blueprints/variants/views.py,sha256=h2z5x7_eA0niXlhOAkYI4eduz3je5XGw_EUnbMenuNA,28136
+scout/server/blueprints/variants/views.py,sha256=E514mSGAQwV7wGnz8WFsT65uqfztlWcgGFCt4z_lEVU,28137
 scout/server/blueprints/variants/static/form_scripts.js,sha256=o3GCboaesA9Sm1HgejS_yQwt0I-NTkvcl56jiBdLqZs,8319
 scout/server/blueprints/variants/templates/variants/cancer-sv-variants.html,sha256=Y7XQZjjrU_cJGU8EEGEF3QzTVvDfEVudFdygYExVxwI,7429
 scout/server/blueprints/variants/templates/variants/cancer-variants.html,sha256=bX9FLoufo72PBDoWp95DVLltxUrbLeuFmZQObP1oAlw,10132
@@ -616,22 +615,23 @@ scout/server/blueprints/variants/templates/variants/components.html,sha256=oNeLa
 scout/server/blueprints/variants/templates/variants/fusion-variants.html,sha256=XGaLgWobzeFHwyQLXr_Yq9THssf8tGU91VbFKdGOFBg,4801
 scout/server/blueprints/variants/templates/variants/indicators.html,sha256=BX6Wg8OpsALCGGozR1eXT57D0Ixrf-OFXVg6G20Wjr0,4400
 scout/server/blueprints/variants/templates/variants/mei-variants.html,sha256=0-wYjaiUByDduWMgmRS4AMg3IppPNtjZL1vvAdFuIPI,5994
-scout/server/blueprints/variants/templates/variants/str-variants.html,sha256=6A8S3h5tvoBIbaisIbCpZ6GuZuiJhldbn5nOqgwyw_g,10182
+scout/server/blueprints/variants/templates/variants/str-variants.html,sha256=sMM6GiuOU8anACtxrSF6YETsuwWUbEQZyyWhl06ev20,10186
 scout/server/blueprints/variants/templates/variants/sv-variants.html,sha256=SgAdgIPdr7pd2TDB2PJlXOmSAjX4WUslfm4eu0cjIBI,6310
 scout/server/blueprints/variants/templates/variants/utils.html,sha256=2WriO5n0IGzVw4kvt1D_hz47TAkdxhHsgAfFnfO_sww,49231
 scout/server/blueprints/variants/templates/variants/variants.html,sha256=nfSZXVGmsjjUuRC-54G9UsNBMhlNjnvBafN34uL73tY,9333
-scout/server/extensions/__init__.py,sha256=xeiVMoky1aB89VXz14pVDF78B9Q2r4g8iFMlYSVuIGo,1141
-scout/server/extensions/beacon_extension.py,sha256=sy8YPnGcYBFoasJdBBMt92gXCUidtTNT3_9S1_F7Bwg,9903
+scout/server/extensions/__init__.py,sha256=tBhPKg0qc0HuZckWgj3UGexhmA7KQ-hlC50DqWx4UT4,1220
+scout/server/extensions/beacon_extension.py,sha256=YDXQQl5kFcsA4OFHDMVurIKLw_3Gl6yWfcy3lYHl9RE,9904
 scout/server/extensions/bionano_extension.py,sha256=XoKnAmNauatyJWUr63_gPlWyX1JGZfEXV6ge_bZ7VTk,7128
+scout/server/extensions/chanjo_extension.py,sha256=HhkbczCkWv8ATO_zuEPfC_tobjbOSmQHKVB16gXSM98,2258
 scout/server/extensions/clinvar_extension.py,sha256=e6rrpOnUs-rn3gGfiOQT4UlBRRXRLgot51G3WB44wrU,3746
 scout/server/extensions/gens_extension.py,sha256=zqfzI7vOvPqNIkIl-uULJp-bS634p-4C6T7JsMI3tQw,1002
 scout/server/extensions/ldap_extension.py,sha256=zJLWLfumJoU8w19767g014H2eqv5VJrn-VWPEVeWCj4,2706
 scout/server/extensions/loqus_extension.py,sha256=EqRUfI8QV8OIeAEFGEvVkF4N6XTqPw8N8yXRfiSh5x0,12452
 scout/server/extensions/matchmaker_extension.py,sha256=t5J0R-EIYxCiygcNrhJb1MAdV2xsigmHlQwvw3Pm2DQ,5035
 scout/server/extensions/mongo_extension.py,sha256=Rku2L8bUm3NR5xzqx8Seinsv83eB9oFAWo151UutcTo,1028
-scout/server/extensions/phenopacket_extension.py,sha256=9BskxYpoVofYfTsbtP_MSnaleepiXnZQB7idMdrHSQI,7294
+scout/server/extensions/phenopacket_extension.py,sha256=kcEUIOSfkQAlAmUm07hQS1BeUjeN4lBc-InvaNtbFxo,7295
 scout/server/extensions/rerunner_extension.py,sha256=5DkygqZ7o1vt9ZytPdhhGqPavysOXtzAugtYN783qso,1103
-scout/server/static/bs_styles.css,sha256=9Y56rPzXDR4iLhYz_uv2KSzwdj4QBppUKAMCbLBl6LQ,5922
+scout/server/static/bs_styles.css,sha256=UU7l0MrdA2BoAEgKvPvEGUzBX0l2nEDzGbiMHGkvpXY,6423
 scout/server/static/custom_images.js,sha256=IUVSlt6GJCXmE1RuSizSMOE89OcFAJnq-ZzA5f2o84s,753
 scout/server/static/favicon.ico,sha256=8aC2QonalUW-D62draMeiII4sZYQSp9BLGQnj-wRlt0,1469
 scout/server/static/humans.txt,sha256=UdqAR07_5LAWWfgH2Ty4RR8BhoHS1WXpx9euKtXqqhs,259
@@ -645,9 +645,8 @@ scout/server/translations/sv/LC_MESSAGES/messages.po,sha256=Wp7Mx4LoiFNtzsV1tpAo
 scout/update/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 scout/update/panel.py,sha256=4z-vQ7GVIJXtlIub9pubFcQ-I9mLX5fRXKNPBdpuhJw,1649
 scout/utils/__init__.py,sha256=DHCMH05dxkyD7m9QSs0WXsQQPgVRFQ9XvyNeNpHjjvg,74
-scout/utils/acmg.py,sha256=SxTVArNwao7XcVPAWU-Rx8V_5n1VpAbJQ3S3wNyDp1Y,7197
+scout/utils/acmg.py,sha256=xIxOXdzklrBeCCk6lUCqWMjzu5Hj3qmlYO7O5RUY6WA,7609
 scout/utils/algorithms.py,sha256=w--NauXbQohZis7obr39a8bS57C4NRelYXn79V7m1dU,800
-scout/utils/cloud_resources.py,sha256=QWPA2yYiafNZpyHAyuNorxGpRN6DkEqbQAjhLglkdpI,2278
 scout/utils/convert.py,sha256=BUt3lYKXdje9GGOvyZuI-SPhBOp_eJtYz1gfUgBY_Z8,1792
 scout/utils/coordinates.py,sha256=n8WUFn9zohXfjxgFGryyg6mzdl0zBG8uVCdyjhizSpM,609
 scout/utils/date.py,sha256=PT5iNB02rJF4aya8Kd8d6JWagyyhO59GBu2T6EQ6pT0,1333
@@ -660,9 +659,10 @@ scout/utils/hgvs.py,sha256=P5i3fIK8WZZlUnjZ8XpMDUG5KDXRCDSOs55DfK5acsc,898
 scout/utils/link.py,sha256=RuCUwnOtGDf9ACaC64_1FqWyWDaBv7dqNEGjmCq59kk,9001
 scout/utils/md5.py,sha256=KkgdxOf7xbF9AF40ZjQKCgWaxFWJ9tp9RKjd8SU6IoA,649
 scout/utils/scout_requests.py,sha256=owL_XvsrQJG4e0EUuUiY6y_hqKKep2Qljg1nMukzp8Y,12855
-scout_browser-4.82.1.dist-info/LICENSE,sha256=TM1Y9Cqbwk55JVfxD-_bpGLtZQAeN9RovQlqHK6eOTY,1485
-scout_browser-4.82.1.dist-info/METADATA,sha256=h7k7EwlAyH5yWKi7iWR9g7qQ7IxIBYsgF9z_eAXkFxU,14280
-scout_browser-4.82.1.dist-info/WHEEL,sha256=oiQVh_5PnQM0E3gPdiz09WCNmwiHDMaGer_elqB3coM,92
-scout_browser-4.82.1.dist-info/entry_points.txt,sha256=E6vGg1OwvvKYIsXdHxmlIj7RmcTF0K77Q_PU8laImGg,46
-scout_browser-4.82.1.dist-info/top_level.txt,sha256=qM75h71bztMaLYsxn1up4c_n2rjc_ZnyaW6Q0K5uOXc,6
-scout_browser-4.82.1.dist-info/RECORD,,
+scout/utils/track_resources.py,sha256=eUjSEe-Ff8BIb4BHPC_COkJocQO2PaWueiPz1GAuiwY,2614
+scout_browser-4.83.dist-info/LICENSE,sha256=TM1Y9Cqbwk55JVfxD-_bpGLtZQAeN9RovQlqHK6eOTY,1485
+scout_browser-4.83.dist-info/METADATA,sha256=NBrhFdyvFGWQuvC__yBWPsECY6HhzNhVUYdMK1aUsjg,14278
+scout_browser-4.83.dist-info/WHEEL,sha256=oiQVh_5PnQM0E3gPdiz09WCNmwiHDMaGer_elqB3coM,92
+scout_browser-4.83.dist-info/entry_points.txt,sha256=E6vGg1OwvvKYIsXdHxmlIj7RmcTF0K77Q_PU8laImGg,46
+scout_browser-4.83.dist-info/top_level.txt,sha256=qM75h71bztMaLYsxn1up4c_n2rjc_ZnyaW6Q0K5uOXc,6
+scout_browser-4.83.dist-info/RECORD,,

scout/load/case.py

@@ -1,36 +0,0 @@
-# -*- coding: utf-8 -*-
-import logging
-
-from scout.exceptions import IntegrityError
-
-logger = logging.getLogger(__name__)
-
-
-def load_case(adapter, case_obj, update=False):
-    """Load a case into the database
-
-    If the case already exists the function will exit.
-    If the user want to load a case that is already in the database
-    'update' has to be 'True'
-
-    Args:
-        adapter (MongoAdapter): connection to the database
-        case_obj (dict): case object to persist to the database
-        update(bool): If existing case should be updated
-
-    Returns:
-        case_obj(dict): A dictionary with the builded case
-    """
-    logger.info("Loading case {} into database".format(case_obj["display_name"]))
-
-    # Check if case exists in database
-    existing_case = adapter.case(case_obj["_id"])
-
-    if existing_case:
-        if update:
-            adapter.update_case(case_obj)
-        else:
-            raise IntegrityError("Case {0} already exists in database".format(case_obj["_id"]))
-    else:
-        adapter.add_case(case_obj)
-    return case_obj

scout/utils/cloud_resources.py

@@ -1,61 +0,0 @@
-# coding=UTF-8
-import logging
-
-LOG = logging.getLogger(__name__)
-
-REQUIRED_FIELDS = ["name", "type", "url"]
-TRACK_KEYS = ["name", "type", "format", "url", "indexURL"]
-
-
-class AlignTrackHandler:
-    """Class collecting external IGV tracks stored in the cloud"""
-
-    def init_app(self, app):
-        self.public_tracks = self.set_public_tracks(app.config["CLOUD_IGV_TRACKS"])
-
-    def track_template(self, track_info):
-        """Provides the template for a VCF track object"""
-        track = {}
-
-        for key in TRACK_KEYS:
-            if key in track_info:
-                track[key] = track_info[key]
-
-        # Save track only of it contains the minimal required keys
-        if all(track.get(key) for key in REQUIRED_FIELDS):
-            return track
-
-    def set_public_tracks(self, bucket_list):
-        """Return a list of public IGV tracks stored on the cloud
-
-        Args:
-            bucket_list(list): a list of cloud bucket dictionaries containing IGV tracks, can be public or private
-
-        Returns:
-            public_tracks(dict): a list of public access tracks stored on the cloud, where key is genome build
-        """
-        public_tracks = {}
-        # Loop over the bucket list and collect all public tracks
-        for bucket_obj in bucket_list:
-            if bucket_obj.get("access") == "private" or None:
-                continue
-            for track in bucket_obj.get("tracks", []):
-                build = track.get("build")
-                if build not in ["37", "38"]:
-                    LOG.warning(
-                        f"One or more IGV cloud public tracks could not be used, Please provide a genome build ('37', '38') for it."
-                    )
-                    continue
-                track_obj = self.track_template(track)
-                if track_obj is None:
-                    LOG.warning(
-                        f"One or more IGV cloud public tracks could not be used, Please provide all required keys:{REQUIRED_FIELDS}"
-                    )
-                    continue
-                if build in public_tracks:
-                    public_tracks[build].append(track_obj)
-                else:
-                    public_tracks[build] = [track_obj]
-
-        if public_tracks != {}:
-            return public_tracks