scout-browser 4.81__py3-none-any.whl → 4.82.2__py3-none-any.whl

scout/server/blueprints/variants/templates/variants/utils.html

@@ -55,6 +55,27 @@
   {% endfor %}
 {% endmacro %}
 
+{% macro archived_observations_filter(form) %}
+  {% if config.SHOW_OBSERVED_VARIANT_ARCHIVE and config.SHOW_OBSERVED_VARIANT_ARCHIVE is true %}
+    {{ form.local_obs_old.label(class="control-label") }}
+    {{ form.local_obs_old(class="form-control") }}
+  {% endif %}
+{% endmacro %}
+
+{% macro archived_observations_cancer_filters(form) %}
+  {% if config.SHOW_OBSERVED_VARIANT_ARCHIVE and config.SHOW_OBSERVED_VARIANT_ARCHIVE is true %}
+    <div class="col">
+      {{ wtf.form_field(form.local_obs_old) }}
+    </div>
+    <div class="col">
+      {{ wtf.form_field(form.local_obs_cancer_somatic_old) }}
+    </div>
+    <div class="col">
+      {{ wtf.form_field(form.local_obs_cancer_germline_old) }}
+    </div>
+  {% endif %}
+{% endmacro %}
+
 {% macro filter_form_footer(form, result_size, total_variants, more_variants, page, nvars, institute) %}
 <div class="card-footer text-center">
   <div class="row">
@@ -110,12 +131,17 @@
 {% endmacro %}
 
 
-{% macro compounds_table(institute, case, compounds) %}
+{% macro compounds_table(institute, case, compounds, is_popover) %}
+  {% set is_popover = is_popover|default(false) %}
   <table class='table table-condensed table-bordered table-sm'>
     <thead class='thead table-light'>
       <tr>
         <th>Variant</th>
-        <th>Combined score</th>
+        <th>Combined score
+          {% if not is_popover %}
+            <span data-bs-toggle='tooltip' data-bs-title='Combined score is the sum of variants´s score and compound variant´s score'>?</span>
+        </th>
+          {% endif %}
         <th>Rank score</th>
         <th>Gene annotation</th>
         <th>Func. annotation</th>
@@ -131,6 +157,8 @@
           <td>
               {% if compound.not_loaded %}
                 {{ compound.display_name }} <small>(not loaded)</small>
+              {% elif is_popover %}
+                {{ compound.display_name }}
               {% else %}
                 <a href='{{ url_for("variant.variant",
                 institute_id=institute._id,
@@ -194,7 +222,8 @@
 {% macro variants_common_filters(form, type) %}
 <div class="row mb-2">
   <div class="col-2">
-    {{ form.gene_panels.label(class="control-label", data_bs_toggle="tooltip", data_bs_placement="left", title="This list can be modified from the institute settings page. Latest panel version is used in variants filtering.") }}
+    <span>{{ form.gene_panels.label(class="control-label", data_bs_toggle="tooltip", data_bs_placement="left", title="This list can be modified from the institute settings page. Latest panel version is used in variants filtering.") }}</span>
+    <span style="float:right;">{{ form.gene_panels_exclude.label(class="control-label", data_bs_toggle="tooltip", data_bs_placement="left", title="Check this box to exclude from the search any gene listed in selected 'Gene Panels', 'Symbol file' or provided in the 'HGNC Symbols/Ids' field.") }} {{form.gene_panels_exclude}}</span>
     {{ form.gene_panels(class="selectpicker", data_style="btn-secondary") }}
   </div>
   <div class="col-2">
@@ -281,8 +310,7 @@
           {{ form.gnomad_frequency(class="form-control") }}
         </div>
         <div class="col-4">
-          {{ form.local_obs.label(class="control-label") }}
-          {{ form.local_obs(class="form-control") }}
+          {{ archived_observations_filter(form) }}
         </div>
         <div class="col-4">
           {{ form.chrom.label(class="control-label") }}
@@ -382,8 +410,7 @@
           {{ form.swegen_freq(class="form-control") }}
          </div>
         <div class="col-4">
-          {{ form.local_obs.label(class="control-label") }}
-          {{ form.local_obs(class="form-control") }}
+          {{ archived_observations_filter(form) }}
         </div>
         <div class="col-4">
           {{ form.chrom.label(class="control-label") }}
@@ -459,7 +486,8 @@
 <input type="hidden" name="variant_type" value="{{ form.variant_type.data }}">
 <div class="row">
   <div class="col-2">
-    {{ form.gene_panels.label(class="control-label", data_toggle="tooltip", data_placement="left", title="This list can be modified from the institute settings page. Latest panel version is used in variants filtering.") }}
+    <span>{{ form.gene_panels.label(class="control-label", data_bs_toggle="tooltip", data_bs_placement="left", title="This list can be modified from the institute settings page. Latest panel version is used in variants filtering.") }}</span>
+    <span style="float:right;">{{ form.gene_panels_exclude.label(class="control-label", data_bs_toggle="tooltip", data_bs_placement="left", title="Check this box to exclude from the search any gene listed in selected 'Gene Panels', 'Symbol file' or provided in the 'HGNC Symbols/Ids' field.") }} {{form.gene_panels_exclude}}</span>
     {{ form.gene_panels(class="selectpicker", data_style="btn-secondary") }}
   </div>
   <div class="col-3">
@@ -560,8 +588,7 @@
   <div class="col-6">
     <div class="row">
       <div class="col-3">
-        {{ form.local_obs.label(class="control-label") }}
-        {{ form.local_obs(class="form-control") }}
+        {{ archived_observations_filter(form) }}
       </div>
       <div class="col-3">
          {{ form.clingen_ngi.label(class="control-label") }}
@@ -632,7 +659,8 @@
     {{ form.variant_type() }}
     <div class="row">
       <div class="col-2">
-        {{ form.gene_panels.label(data_toggle="tooltip", data_placement="left", title="This list can be modified from the institute settings page. Latest panel version is used in variants filtering.") }}
+        <span>{{ form.gene_panels.label(class="control-label", data_bs_toggle="tooltip", data_bs_placement="left", title="This list can be modified from the institute settings page. Latest panel version is used in variants filtering.") }}</span>
+    <span style="float:right;">{{ form.gene_panels_exclude.label(class="control-label",  data_bs_toggle="tooltip", data_bs_placement="left", title="Check this box to exclude from the search any gene listed in selected 'Gene Panels', 'Symbol file' or provided in the 'HGNC Symbols/Ids' field.") }} {{form.gene_panels_exclude}}</span>
         {{ form.gene_panels(class="selectpicker", data_style="btn-secondary") }}
       </div>
       <div class="col-2">
@@ -698,27 +726,25 @@
     </div>
     <div class="form" id="chromosome_search">
       <div class="row" style="margin-top:20px;">
-        <div class="col-1">
+        <div class="col">
           {{ form.gnomad_frequency.label(class="control-label") }}
           {{ form.gnomad_frequency(class="form-control") }}
         </div>
-        <div class="col-1">
-          {{ wtf.form_field(form.local_obs) }}
-        </div>
-        <div class="col-2">
+        {{ archived_observations_cancer_filters(form) }}
+        <div class="col">
           {{ form.chrom.label(class="control-label") }}
           {{ form.chrom(class="selectpicker", data_actions_box="true", data_style="btn-secondary") }}
         </div>
-        <div class="col-2">
+        <div class="col">
           {{ wtf.form_field(form.start) }}
         </div>
-        <div class="col-2">
+        <div class="col">
           {{ wtf.form_field(form.end) }}
         </div>
-        <div class="col-2">
+        <div class="col">
           {{ wtf.form_field(form.cytoband_start) }}
         </div>
-        <div class="col-2">
+        <div class="col">
           {{ wtf.form_field(form.cytoband_end) }}
         </div>
       </div>
@@ -767,7 +793,8 @@
     {{ form.variant_type() }}
     <div class="row mb-3">
       <div class="col-2">
-        {{ form.gene_panels.label(class="control-label", data_toggle="tooltip", data_placement="left", title="This list can be modified from the institute settings page. Latest panel version is used in variants filtering.") }}
+        <span>{{ form.gene_panels.label(class="control-label", data_bs_toggle="tooltip", data_bs_placement="left", title="This list can be modified from the institute settings page. Latest panel version is used in variants filtering.") }}</span>
+        <span style="float:right;">{{ form.gene_panels_exclude.label(class="control-label", data_bs_toggle="tooltip", data_bs_placement="left", title="Check this box to exclude from the search any gene listed in selected 'Gene Panels', 'Symbol file' or provided in the 'HGNC Symbols/Ids' field.") }} {{form.gene_panels_exclude}}</span>
         {{ form.gene_panels(class="selectpicker", data_style="btn-secondary") }}
       </div>
       <div class="col-2">
@@ -823,27 +850,25 @@
     </div>
     <div id="chromosome_search">
       <div class="row" style="margin-top:20px;">
-        <div class="col-1">
+        <div class="col">
          {{ form.gnomad_frequency.label(class="control-label") }}
          {{ form.gnomad_frequency(class="form-control") }}
         </div>
-        <div class="col-1">
-          {{ wtf.form_field(form.local_obs) }}
-        </div>
-        <div class="col-2">
+        {{ archived_observations_cancer_filters(form) }}
+        <div class="col">
           {{ form.chrom.label(class="control-label") }}
           {{ form.chrom(class="selectpicker", data_actions_box="true", data_style="btn-secondary") }}
         </div>
-        <div class="col-2">
+        <div class="col">
           {{ wtf.form_field(form.start) }}
         </div>
-        <div class="col-2">
+        <div class="col">
           {{ wtf.form_field(form.end) }}
         </div>
-        <div class="col-2">
+        <div class="col">
           {{ wtf.form_field(form.cytoband_start) }}
         </div>
-        <div class="col-2">
+        <div class="col">
           {{ wtf.form_field(form.cytoband_end) }}
         </div>
       </div>
@@ -892,7 +917,8 @@
 <input type="hidden" name="variant_type" value="{{ form.variant_type.data }}">
 <div class="row">
   <div class="col-2">
-    {{ form.gene_panels.label(class="control-label", data_toggle="tooltip", data_placement="left", title="This list can be modified from the institute settings page. Latest panel version is used in variants filtering.") }}
+    <span>{{ form.gene_panels.label(class="control-label", data_bs_toggle="tooltip", data_bs_placement="left", title="This list can be modified from the institute settings page. Latest panel version is used in variants filtering.") }}</span>
+    <span style="float:right;">{{ form.gene_panels_exclude.label(class="control-label", data_bs_toggle="tooltip", data_bs_placement="left", title="Check this box to exclude from the search any gene listed in selected 'Gene Panels', 'Symbol file' or provided in the 'HGNC Symbols/Ids' field.") }} {{form.gene_panels_exclude}}</span>
     {{ form.gene_panels(class="selectpicker", data_style="btn-secondary") }}
   </div>
   <div class="col-3">

scout/server/blueprints/variants/templates/variants/variants.html

@@ -164,7 +164,7 @@
     {% if ns.show_compounds %}
       <a href="#" class="badge bg-primary text-white" data-bs-toggle="popover" data-bs-placement="left"
         data-bs-html="true" data-bs-trigger="hover click"
-        data-bs-content="{{ compounds_table(institute, case, variant.compounds[:20]) }}">Compounds</a>
+        data-bs-content="{{ compounds_table(institute, case, variant.compounds[:20], is_popover=true) }}">Compounds</a>
     {% endif %}
   {% endif %}
 

scout/server/blueprints/variants/utils.py

@@ -1,23 +1,20 @@
 # -*- coding: utf-8 -*-
+from scout.adapter import MongoAdapter
 
 
-def update_case_panels(store, case_obj):
+def update_case_panels(store: MongoAdapter, case_obj: dict):
     """Refresh case gene panels with info on if a panel was removed.
+    Also sets the key "latest_panels" for a case where the value is the latest version of the case panels
 
-    Also return these more populated panels for optional storage on the variant_obj.
     If you do not use the returned variants, but rely on the update, please remember
     to call this function before updating the variants.
-
-    store(adapter.MongoAdapter)
-    case_obj(dict)
-
-    Returns:
-        list(panel_info)
     """
+    case_obj["latest_panels"] = []
 
     for panel_info in case_obj.get("panels", []):
         panel_name = panel_info["panel_name"]
         latest_panel = store.gene_panel(panel_name)
         panel_info["removed"] = False if latest_panel is None else latest_panel.get("hidden", False)
-
-    return case_obj.get("panels", [])
+        if latest_panel:
+            latest_panel["hgnc_ids"] = [gene["hgnc_id"] for gene in latest_panel.get("genes", [])]
+            case_obj["latest_panels"].append(latest_panel)

scout/server/extensions/clinvar_extension.py

@@ -1,8 +1,8 @@
 import json
 import logging
-from tempfile import NamedTemporaryFile
 
 import requests
+from flask import flash
 
 from scout.constants.clinvar import CLINVAR_API_URL, PRECLINVAR_URL
 
@@ -19,7 +19,7 @@ class ClinVarApi:
         self.convert_service = "/".join([PRECLINVAR_URL, "csv_2_json"])
         self.submit_service = CLINVAR_API_URL
 
-    def set_header(self, api_key):
+    def set_header(self, api_key) -> dict:
         """Creates a header to be submitted a in a POST rquest to the CLinVar API
         Args:
             api_key(str): API key to be used to submit to ClinVar (64 alphanumeric characters)
@@ -76,3 +76,11 @@ class ClinVarApi:
 
         except Exception as ex:
             return None, ex
+
+    def show_submission_status(self, submission_id: str, api_key=None):
+        """Retrieve the status of a ClinVar submission using the https://submit.ncbi.nlm.nih.gov/api/v1/submissions/SUBnnnnnn/actions/ endpoint."""
+
+        header: dict = self.set_header(api_key)
+        actions_url = f"{CLINVAR_API_URL}{submission_id}/actions/"
+        actions_resp: requests.models.Response = requests.get(actions_url, headers=header)
+        flash(f"Response from ClinVar: {actions_resp.json()}", "primary")

{scout_browser-4.81.dist-info → scout_browser-4.82.2.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: scout-browser
-Version: 4.81
+Version: 4.82.2
 Summary: Clinical DNA variant visualizer and browser.
 Home-page: https://github.com/Clinical-Genomics/scout
 Author: Måns Magnusson
@@ -16,12 +16,12 @@ Classifier: Topic :: Internet :: WWW/HTTP :: Dynamic Content
 Classifier: Topic :: Software Development :: Libraries
 Classifier: Programming Language :: Python :: 3.6
 Description-Content-Type: text/markdown
-Requires-Dist: werkzeug <2.3
+Requires-Dist: werkzeug <3
 Requires-Dist: Flask >=2.0
 Requires-Dist: Flask-Bootstrap
 Requires-Dist: Flask-CORS
 Requires-Dist: path.py
-Requires-Dist: Flask-Markdown
+Requires-Dist: markdown
 Requires-Dist: WTForms
 Requires-Dist: Flask-WTF
 Requires-Dist: Flask-Mail
@@ -171,9 +171,9 @@ scout load panel scout/demo/panel_1.txt
 scout load case scout/demo/643594.config.yaml
 ```
 
-## Integration with chanjo for coverage report visualization
+## Integration with chanjo and chanjo2 for coverage report visualization
 
-Scout may be configured to visualize coverage reports produced by [Chanjo][chanjo]. Instructions on
+Scout may be configured to visualize coverage reports produced by [Chanjo][chanjo] or [chanjo2][chanjo2]. Instructions on
 how to enable this feature can be found in the document [chanjo_coverage_integration][chanjo-scout].
 
 ## Integration with loqusdb for integrating local variant frequencies
@@ -311,6 +311,7 @@ be found in [CONTRIBUTING](CONTRIBUTING.md).
 
 
 [chanjo]: https://github.com/Clinical-Genomics/chanjo
+[chanjo2]: https://github.com/Clinical-Genomics/chanjo2
 [chanjo-scout]: docs/admin-guide/chanjo_coverage_integration.md
 [loqusdb]: https://github.com/moonso/loqusdb
 [loqusdb-scout]: docs/admin-guide/loqusdb_integration.md

{scout_browser-4.81.dist-info → scout_browser-4.82.2.dist-info}/RECORD

@@ -1,5 +1,5 @@
 scout/__init__.py,sha256=Z4liXvmEcLkC67ElsWvYHfemPKdWgWI5O6MB6XlDM8M,232
-scout/__version__.py,sha256=VeFs5riF3Z37kcJaV1kAfC-gVFhM1kN-tnvgq4X9qaY,21
+scout/__version__.py,sha256=-tAuS8cIDLp6AGxFKcTo19IOq_e24ShlFdKfJzggGj0,23
 scout/adapter/__init__.py,sha256=-iX_hx2NI1EMAqX0pMd5_90Nnd9uvIMxv9EbefYBzsc,86
 scout/adapter/client.py,sha256=0VR5LRPEqZg_bAxQte1RGMxV8BSiQordbPs57PaZTlI,1512
 scout/adapter/mongo/__init__.py,sha256=NdHYCUXWUAuX5cUS3-6HCws2hW9uoGep8i0SC-oJd3k,31
@@ -10,7 +10,7 @@ scout/adapter/mongo/case_events.py,sha256=jSejlOxU_qx7pphvkfQuVTpz7Zjwx4H41nFhdP
 scout/adapter/mongo/case_group.py,sha256=tG8DuO0rNYepV4k0yCGPqssODErc0HMsAypg3mfhcV0,1575
 scout/adapter/mongo/clinvar.py,sha256=tczC39O3DFDkYgjt2RDgkkG-x1Mvx_99Hw7dAbIQ5gk,19838
 scout/adapter/mongo/cytoband.py,sha256=pOWMvOn7lLATk_ShuzRWnGa3xRyILGRJRxh4VONCw7k,2082
-scout/adapter/mongo/disease_terms.py,sha256=rmffGIAAXya7KbOw7xmfVmsqHlRJ4b_h1B0mLyq_AqU,5544
+scout/adapter/mongo/disease_terms.py,sha256=4qcQRLuP5xn_RkB2RlNtwCrONmDuWwdlngZrj87BUEo,5637
 scout/adapter/mongo/event.py,sha256=NnURFhS5odOXk7So_gGMHmALPAJM0PWzESI4FC06azE,19842
 scout/adapter/mongo/filter.py,sha256=GoPqMDqteE1pDiVfpUP8xxT_1A8s7S4ByITCJGdesok,7570
 scout/adapter/mongo/hgnc.py,sha256=sQZtHEe8q42HVJ9F7uIwE2oY5dJUS_TWAQ6WUqLCxC0,15980
@@ -21,7 +21,7 @@ scout/adapter/mongo/managed_variant.py,sha256=YFdnIhNVIawVhmlOxHOpe6sJyso0FCGdlX
 scout/adapter/mongo/matchmaker.py,sha256=amTvFOlUbrt1RmecY_8hPY6bO3j79lc2UbmzlCQcRuk,6378
 scout/adapter/mongo/panel.py,sha256=KoSHKbYBPzA_-NugGKwHDzPTHO9RZuj7U4oxKvp6_LU,20916
 scout/adapter/mongo/phenomodel.py,sha256=cypSS8YRzu98Bf1kC0orfrLNn_ZQSYCK8e4mNR5PaPY,2572
-scout/adapter/mongo/query.py,sha256=f91GL0OVZ1T-fLFaZWIbjNh1yd0qvZzlSZQeQL6orvc,32187
+scout/adapter/mongo/query.py,sha256=Mpl8wxfmxFbue5Mixq1jCQcImCPg9D5nf6jCli2WDTM,32653
 scout/adapter/mongo/rank_model.py,sha256=wvDNI4OLf-f7ZYZ_Q_6qi0myxOJCNNJR_-2-_0u2K2M,5712
 scout/adapter/mongo/transcript.py,sha256=3U1qtyxZ1DnrzdBJm_emJXISMYFKJuX_zAKynUt8NMY,7417
 scout/adapter/mongo/user.py,sha256=QoQnRWqi_dV3ZwGzBonEU6Ap9TgMDf2x_C5UIqG0pa0,2569
@@ -35,7 +35,7 @@ scout/build/disease.py,sha256=Zew9AF_z1NbbKcO3uJZ2wgni501SkfnYRgnaCZ4m8FY,2020
 scout/build/hpo.py,sha256=LJBCTq-x09D0CSKcUHB8a6ynuUrVh_7Ia0ooA1BxMys,1207
 scout/build/individual.py,sha256=tWK8iKVujuCoZz-rhBVj-RCnlkU19vCSyJtXhlENwS4,5117
 scout/build/institute.py,sha256=CZKn-cFbh0cWO2ySoRV_P1nYFizlyvu50LKrtAz-PLo,1330
-scout/build/managed_variant.py,sha256=pGLiJRbTgTlinaGTtPq-vdAogSmYCkMaDpR0Q35zLrk,1468
+scout/build/managed_variant.py,sha256=krcQBc4LLxlnUQwXuV2FxNLiSkMoIkLxQueYFl04Vyo,1666
 scout/build/panel.py,sha256=IrTPFPgqXnbE92vvHpa8NqnTRO7GqWcpPBCtMcdzV84,5348
 scout/build/user.py,sha256=Df_k2H4CxR80yqmgVvl3u3YC9ikr33BLH5fGkxZ3Mlw,942
 scout/build/genes/__init__.py,sha256=AbpHGcgLb-kRsJGnwFEktk7uzpZOCcBY74-YBdrKVGs,1
@@ -46,9 +46,9 @@ scout/build/variant/__init__.py,sha256=Y70EK_8TS69seYSyIvL1Mek1FMo3XPeXcOnYVIOWg
 scout/build/variant/clnsig.py,sha256=uAfrf4RSUGliIp13fW9XqJshodNWxjuAwUbBbNHgmCc,719
 scout/build/variant/compound.py,sha256=tYikQ4PmgAH1_yrE9uYaUX4_EoAs_XEiT8JWAjrZuDg,816
 scout/build/variant/gene.py,sha256=9mS6sEBksBNKDoyo-yo-_5IdSRwYrpF1jIzfNAg6-Ek,3815
-scout/build/variant/genotype.py,sha256=Ul61ul7FUxGRSMqiup_OBwWn_b9XFP_ns3NrNhnJhlM,947
+scout/build/variant/genotype.py,sha256=QDTZWFB8ix9Zd1m9UPWgT008i6rC7gT-uFzRr9GniDU,1009
 scout/build/variant/transcript.py,sha256=hf_led1kdT3hVEwtHdORhBSk6a6o_zEDJ0z4ZF8IlFA,1205
-scout/build/variant/variant.py,sha256=mSsaRVnB5frL1Sl1K5RGiX2bFaC4HwlnH-kGHVG2_KA,18115
+scout/build/variant/variant.py,sha256=GJBRoAb-Ul9_tR1tUmnNpS9lpJOlLV0K4mEid98jS58,18427
 scout/commands/__init__.py,sha256=VrenBj1daCAnIsBZtvdbv1SuxmODT_TTY8YcxWItrXE,22
 scout/commands/base.py,sha256=2Hhig-X598AVnxQz9A2UObRQD45jFV0MtdNeUn3B7Hw,4609
 scout/commands/convert.py,sha256=T5dkFjRKSTf7dBS9uKIW4wEmdL13vKzKTLRy4nvf6Vg,1090
@@ -126,7 +126,7 @@ scout/commands/view/users.py,sha256=MKlmhDYRM7Yf-Trmi1ijEuqsDIUn326bdFADyDs7XYg,
 scout/constants/__init__.py,sha256=u-faDDRxNzCeAKryKLdFSuIDSjrg6_BUj-5BYzXzXWs,6827
 scout/constants/acmg.py,sha256=fjq_UFLkJPh7ZfuW-l4KH_lWKAGhNiKhlaPu1G_WXo4,13091
 scout/constants/case_tags.py,sha256=Pr9Go_I8udRnrdcRcZdu4swS0Jpdwf8hUdDVGR6d9yY,10937
-scout/constants/clinvar.py,sha256=2YdsHDy3mprWjcJEMyejLzkRLtm891xO9ckFQQk10cw,5587
+scout/constants/clinvar.py,sha256=TzbnbUsSBML3k1SBVIL3kQh5Hwjq5kqKhtQOOEkfHwU,5586
 scout/constants/clnsig.py,sha256=2u_avIzWO_IPJGcTOoSB7_xqgu5JBl_zZZfT8UVpY90,1359
 scout/constants/disease_parsing.py,sha256=m10iPVzdTsdx7v9ZWvdLjlBrQKR_uyMeJwPbokO9SHY,688
 scout/constants/file_types.py,sha256=OQ3g1uo4jvhiLlPV1MBoqctWGc4YrS2wnGS6PoflIAA,1016
@@ -135,7 +135,7 @@ scout/constants/gene_tags.py,sha256=tdzDh6ukJRtHiC8X5YkldijZCS0KrEeXj95sLNlqxuc,
 scout/constants/igv_tracks.py,sha256=3-3VzFpCTfuhbEBAitbpY2lQRYXYf-poya3DXs0g9yE,4500
 scout/constants/indexes.py,sha256=6hX64eouUQx6kdPd1rTGEQAM9htDaEPwjy35USVbkJ4,4842
 scout/constants/phenotype.py,sha256=MrbXirisR_7GPnxV3NOj3-BoM9CvtGgFZj7PfJu85RM,2331
-scout/constants/query_terms.py,sha256=NSymLgwhcxuOddl-Mvh22MahJD6rT2zjopr-x4RVOd0,1479
+scout/constants/query_terms.py,sha256=RrHSBde-UNfdD2D5r1ViHcLfDD-q_sEkLZsPKOE91x4,1556
 scout/constants/so_terms.py,sha256=aJcQv3wgpZylVhqSJH854WS8xSARDxWGnW6I5mG1egE,4321
 scout/constants/variant_tags.py,sha256=HZo_9adwSaoQTTmro6PdXNdiPYF4dNAhK19674wGC8k,16131
 scout/constants/variants_export.py,sha256=ee3dyM6CifvPUU4zsVwYzG9Dptn3qBBhP72olHHJ6i4,1942
@@ -393,7 +393,7 @@ scout/models/case/case_loading_models.py,sha256=D1WYdkezb71MV-f0UM9OVjiS53zHQuS0
 scout/models/variant/__init__.py,sha256=H-IZ2hSTSVS28S8FZzA8j2Cyu1PHQFXyMWJFtCucPAk,40
 scout/models/variant/gene.py,sha256=98CG_JcAklGGFIrUulf1_olQalV65kXQO-gOf7VQZ0A,1095
 scout/models/variant/transcript.py,sha256=rfflEbTs7Bn4HDENqrxtGopQ_0HKnrVLLyBcrj4NpwM,1720
-scout/models/variant/variant.py,sha256=Qrk2zC8n8tp31o-fTcGO-xXrZK9DBP0klXRDgPP9iI8,4408
+scout/models/variant/variant.py,sha256=zdSOqI8GYJWlQdbucC68M_5iWS79ar29twGvBunCuOQ,4424
 scout/parse/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 scout/parse/case.py,sha256=-swb-XBe6AOAzRBXob0VBQhotInZ9cg9L4sspIwS5zc,11653
 scout/parse/cytoband.py,sha256=7flY3b_wegupHHBLRcs4KyM1ns-uzuTfVHm4CycnupE,1055
@@ -417,21 +417,21 @@ scout/parse/variant/compound.py,sha256=zeRHBwobusCW-ylgurHrnPsc-edeJHeXj6xjXkrbF
 scout/parse/variant/conservation.py,sha256=nNG0o7i1AkxZ9lZPodC292CEQ-JAyYEB-qoBr2PoOwk,2948
 scout/parse/variant/coordinates.py,sha256=CU-EyD8NVgTbyIdmYDO3k-zVaMN1EDONjorDwyUSnXU,4742
 scout/parse/variant/deleteriousness.py,sha256=zeFzx218GL-5pKniyci7MVHj3a1cep4nmvoSg7u0ogA,541
-scout/parse/variant/frequency.py,sha256=5cBYWsRGMNczbUSpXqFftk3qw7W7eS8ybOyhK_k0Lfw,7691
+scout/parse/variant/frequency.py,sha256=dKWvuXtG5Ow3QyDMBYdDBgJQGhqZmQWlcEG0YosA87M,7624
 scout/parse/variant/gene.py,sha256=30SR2ck12HQW87LlRfchdgPVzOxb74aIXC2WzPL2BPk,4688
-scout/parse/variant/genotype.py,sha256=wJIR4sReh07s5nMdeIcqUiCj6NHj8vTtYb5T3fFYUAk,14060
+scout/parse/variant/genotype.py,sha256=QDSn9dRpbyNQgbu5rQtRAp3k1XQkiem_3B9H6ttMaKA,16495
 scout/parse/variant/headers.py,sha256=se3H4r22q30MIvtOyc5jWNXZLVnDx58X4h-eED7hkl4,2947
 scout/parse/variant/ids.py,sha256=N_2m7Hgdh7asHdWU4k2dMySsutxp16ODRE_OHy_Niwg,2628
 scout/parse/variant/managed_variant.py,sha256=qwmi2sPLwGZM5izSsMpvhQ9vfMHREiwiIzjDCuOdqQo,2288
 scout/parse/variant/models.py,sha256=NrqLXu7PxpIQ0NmjGRIEk4vS_y972VPiexLsZCZpOn0,507
 scout/parse/variant/rank_score.py,sha256=ipFxCTsQHMqObUbzLJlDAKUb3_lk_sqEYzH52myZVVk,486
-scout/parse/variant/transcript.py,sha256=Hith5oBrXW90-HIF40DkvIQ3dhJwS-a2eZ6Ih_X731s,12813
-scout/parse/variant/variant.py,sha256=UVkN2uETtlbjKjTXdtyxDWmiBFRdVschcpd2tt98ZKY,23136
+scout/parse/variant/transcript.py,sha256=h0-IPDj4Th5aNijyhR1jrwnPe_YZx5QVajqn9ttxE98,13340
+scout/parse/variant/variant.py,sha256=hKsE2b97hRuUpE948VHL5WOL81n-_RKpZBdRGOHaV1A,23759
 scout/resources/__init__.py,sha256=MNY3UdgbvOGoVnwGQly2HyOtMfkdPXqnN-sbe_XrOJ8,337
 scout/resources/cytoBand_hg19.txt.gz,sha256=pheUD5b9NlVuvwwnbKwDc2FG80Yg70gvPxVXP-Sqd3k,6147
 scout/resources/cytoBand_hg38.txt.gz,sha256=sqSVmvPlktQ-0hTiTapJM-5UgyV6xDoYZuTF0kPuETs,6105
 scout/server/__init__.py,sha256=iwhKnzeBJLKxpRVjvzwiRE63_zNpIBfaKLITauVph-0,24
-scout/server/app.py,sha256=ShKtLBJCz9ekCStMkDrinoeBd58ieRH64CmlQTgYbbw,11891
+scout/server/app.py,sha256=oM1rdghv5fQ5Wy46SRjeN9fLl2vk9ad6C3LtF58q_DA,11995
 scout/server/auto.py,sha256=8B6GwfOaUChkTLuLgYQDFMWlxGuHkEegF1argH2G2Ik,401
 scout/server/config.py,sha256=Ld9Vznr9cyss-PS8Av1OH4H96sDpzf8ZU3aWTNjTeqo,5228
 scout/server/links.py,sha256=TVAyn4_vvKpiZjIEIMdbNZReNrCRgOfvV8ZHCqlgWy0,26996
@@ -443,38 +443,39 @@ scout/server/blueprints/alignviewers/partial.py,sha256=9hpI00yhvZZCcPVUHlVDp488r
 scout/server/blueprints/alignviewers/views.py,sha256=cnCg3fLGMWnOt5VZuQX82s7oBDbERe2MT0ip99jG7_s,5085
 scout/server/blueprints/alignviewers/templates/alignviewers/igv_sashimi_viewer.html,sha256=2SCRN7lNAjdQWx3hB6avDPZ4lwfE4tgM4ksUS_SZQok,5219
 scout/server/blueprints/alignviewers/templates/alignviewers/igv_viewer.html,sha256=PTj6pn_f3sCdfhyJlKlrGS6Qe0UnEVj__Q31WZPsEhQ,6426
-scout/server/blueprints/alignviewers/templates/alignviewers/utils.html,sha256=vr1Ap-yvii02V_XrM3nXG8RoHcda-nfCpTINWUMFeso,205
+scout/server/blueprints/alignviewers/templates/alignviewers/utils.html,sha256=ni4V7PqM0KQbDv1jwE9dBCc1oqyP3frGqv_uTn33FPg,206
 scout/server/blueprints/api/__init__.py,sha256=HR6HjS7ot1K_8Lt5eQdNT154z_FCdHGSigy8r2LpNCI,26
 scout/server/blueprints/api/views.py,sha256=pbl78wfhrm1T8JmiJDYF3BbTbfFrlF-hQRbuv2GWI0s,3729
 scout/server/blueprints/cases/__init__.py,sha256=_c17kPFITFYcIVphF4V9bf0PZBer8bU3rtVWQnljKDU,52
-scout/server/blueprints/cases/controllers.py,sha256=Wh899tGI6u5kry_oCd_LeEYnh31lzM6VlLsQMqLOHlg,56208
-scout/server/blueprints/cases/views.py,sha256=Ne1ppLKe2Yf-kvgdkz7z0RIqBFtmRf1ZeFQ3czuswqs,43639
+scout/server/blueprints/cases/controllers.py,sha256=om7TPqsb2ZUGTAmuicp_peplZ1ujBPMUhwu_NYL7nuQ,54180
+scout/server/blueprints/cases/views.py,sha256=0MikCLSJUkQBbT3vNIAWefD57_6lZ4302Zx52LMygB8,42685
 scout/server/blueprints/cases/static/case_images.js,sha256=pb_gG7DNQc-1lADqSII8YvjBwmHyeQWYVtuu2jyrTlU,14997
 scout/server/blueprints/cases/static/case_styles.css,sha256=2Pgc8pFf9DR5HM1sTdAjaRWhjL-bK5bsQnLpH54HZak,541
 scout/server/blueprints/cases/static/edit_pedigree.js,sha256=ntC5fie7SsOYJau8qkke1UHxjiYWY_gBzWcIkGpdJUA,2978
 scout/server/blueprints/cases/static/madeline.js,sha256=KHxKMBVlYVJODNu5QkY9hhsGkDJNoaCoCZZ0DRu0YN0,1175
 scout/server/blueprints/cases/templates/cases/case.html,sha256=4u3XfrgcV1cZFWxQ5vmKJdWV-gEmnCr9SdP_rrUNt6o,35110
-scout/server/blueprints/cases/templates/cases/case_bionano.html,sha256=kRnhlflW80f4dXZeWh0CM9eM7Azmst64vvljxoLLozw,6774
-scout/server/blueprints/cases/templates/cases/case_report.html,sha256=SatY7nAY67bQrP5kr4FYJ0FVcN7q3xrt-CH4WGC8X6c,62999
-scout/server/blueprints/cases/templates/cases/case_sma.html,sha256=9kxXy6PHsSsou9sJOb0-xFoPAjqP9XBonj_wt_-9Cgw,5356
+scout/server/blueprints/cases/templates/cases/case_bionano.html,sha256=PLoRv7hDJcHwxhi-0hC9fQSZc7V_aUYHBhhQqcn_2G8,5946
+scout/server/blueprints/cases/templates/cases/case_report.html,sha256=1tosH5xEl6CCZ1P6qlR5OKvWbAC5z3ewKL_JGdgPMBM,63635
+scout/server/blueprints/cases/templates/cases/case_sma.html,sha256=SAcElb4kH05mkPdEdaEbed-vbgQQGfxioCoNZsHljDc,4962
 scout/server/blueprints/cases/templates/cases/case_tabular_view.html,sha256=ko-LDUKmIoTazMZ2nFWvPEZsgObU07RwqIkDYFjokoY,4317
-scout/server/blueprints/cases/templates/cases/collapsible_actionbar.html,sha256=j5PYeC-YtI8kK6oYHMahmHWZ-8BG8RzoB6qRSkBAHSo,29256
+scout/server/blueprints/cases/templates/cases/chanjo2_form.html,sha256=5Wmk7DM8LI3MynqzxeTzAr_EoEBwVVo31djcI5ZlTdo,2164
+scout/server/blueprints/cases/templates/cases/collapsible_actionbar.html,sha256=5CEHrjCXLS4VVqZSGOob0SNKxjyhg2f0oy7r2f64TK0,29252
 scout/server/blueprints/cases/templates/cases/diseases.html,sha256=ETTQI0Nrl_v86NoX9mFZcvWD-qM1IJoqPmHPWn__Grw,1677
-scout/server/blueprints/cases/templates/cases/gene_panel.html,sha256=BIAHYtbbUhBW9TlF0r_l8sSAvslCnKW9whgcCiB1c3E,12640
+scout/server/blueprints/cases/templates/cases/gene_panel.html,sha256=fR2fCb5A_dBUTTyI4GfwARtOC6k9LeFunx8flbb6qko,12309
 scout/server/blueprints/cases/templates/cases/index.html,sha256=oUmjFyUvwP4yo21CxcWy-6eepMFI65hpznMEpSEqKfM,1207
-scout/server/blueprints/cases/templates/cases/individuals_table.html,sha256=Y_OeIsEnLe_0_AzqgZdO4KMyoQ94auRLnVboLgBUPW8,11861
+scout/server/blueprints/cases/templates/cases/individuals_table.html,sha256=DXE7gE0f81B5CxCV1e5bqWv27_HS-9-8nc0pcFkMoOg,11497
 scout/server/blueprints/cases/templates/cases/institutes_sidebar.html,sha256=u0oPGHJ0ipZ1LkjHkbwlWfkUWc1h6XH1nh3tkbX17z0,4546
 scout/server/blueprints/cases/templates/cases/matchmaker.html,sha256=1vwGBhM4HgvRMlO1foKBAwV-Wfvfs1MRvzteOETCZeM,13142
 scout/server/blueprints/cases/templates/cases/phenotype.html,sha256=38BIwPzTgv5_9BLaTi8beafU2fOrVIfnlV-s88WAx3k,15982
-scout/server/blueprints/cases/templates/cases/utils.html,sha256=XhKy4XE28C0NzGBZHHozRT3dEFdb2DW676T88pPzWWo,33953
+scout/server/blueprints/cases/templates/cases/utils.html,sha256=kYctb7PKlKKjYHHJ0LpdqYsBpJf2tq_yzrwsRQ8td_w,34803
 scout/server/blueprints/clinvar/__init__.py,sha256=BV3aH2AbiA2WWrUEMbGd0H9MefFd2eTsRE9ShywbzpI,30
-scout/server/blueprints/clinvar/controllers.py,sha256=iy1VtqIXKJMCqCafZOmnDOArG8VfUX1oIel58ibvnzI,24066
+scout/server/blueprints/clinvar/controllers.py,sha256=TEOdUTVYI-I_lzts0F3M_TFPMkeeweWIUxWug5HUhDw,24059
 scout/server/blueprints/clinvar/form.py,sha256=d0EBJouYsk-kIpGtAr_SfNCyLoBNchfLt25uFR9HxO0,5155
-scout/server/blueprints/clinvar/views.py,sha256=TbuzlEixW63NDSO49I6bE0jItt80ERA5uWQ94sKW9c0,5571
+scout/server/blueprints/clinvar/views.py,sha256=hPyTJA7Qy6QOL-ENSG1N0atnQXuYCb-iiO8fuNDjJns,6036
 scout/server/blueprints/clinvar/static/form_style.css,sha256=Tro2w0Su9st2ZRpt8PjF7qXYet-0n6Eyol4oh94JafU,4073
 scout/server/blueprints/clinvar/templates/clinvar/clinvar_howto.html,sha256=phFsRl6Hv94sy4GueBN0MXYbQsW6qmR1NoH-3Iwt2zs,4852
-scout/server/blueprints/clinvar/templates/clinvar/clinvar_submissions.html,sha256=Jf36lkt13nN6JZ2wJ3IFI4Dy_HHWV07uTO6Xkwn2gHo,16647
-scout/server/blueprints/clinvar/templates/clinvar/multistep_add_variant.html,sha256=X1F32zLAwCi1ViX9S8Ix7oeA3VaJORZMQ-1PGYP-o9c,31029
+scout/server/blueprints/clinvar/templates/clinvar/clinvar_submissions.html,sha256=4PPiOSXszJy-yqjhideoWhQ2SwRZ9o66yL7slUHqeeM,18241
+scout/server/blueprints/clinvar/templates/clinvar/multistep_add_variant.html,sha256=z6OQ3uEOtkFQAltPYg3Vn8E7__WvK-vc4LOFLYZ7YUM,31623
 scout/server/blueprints/dashboard/__init__.py,sha256=9YTjGeFexyEbl4P-gs7j8VEjyhnVwHZFfz57eTtod1M,69
 scout/server/blueprints/dashboard/controllers.py,sha256=n85n1lm1MJulPBhKk3VrUH8EXaVqt9TrP0Dolb0U7F0,9582
 scout/server/blueprints/dashboard/forms.py,sha256=CgwCHGZcxi08-04hwlw-rXZau_C9X2Qoq1ayTd533qY,826
@@ -482,7 +483,7 @@ scout/server/blueprints/dashboard/views.py,sha256=VjJI44FBfjQMR21AKminmQWmM3QT9V
 scout/server/blueprints/dashboard/static/charts.js,sha256=_OSNlhWM8Tys2kReCWAR8RgPlgYNDXJmrZNJs6yXruk,4228
 scout/server/blueprints/dashboard/templates/dashboard/dashboard_general.html,sha256=OypTHBlXrGvl9Rn0Vs82hkN8JE7oBl2nBmOoXJDwjUI,6507
 scout/server/blueprints/diagnoses/__init__.py,sha256=sORNuH8TXn63RI7KVRSVrMrPwTzZs9gNMfPxtzUZW-U,27
-scout/server/blueprints/diagnoses/controllers.py,sha256=Y9jH74BumguJga_vUQwQpeMIviQXqtQdvJzaPCfw6oA,1596
+scout/server/blueprints/diagnoses/controllers.py,sha256=h-enZ2T8lwPDFl9pVKRZ7Mr41xMyMLtmT4j4CBG6joQ,1654
 scout/server/blueprints/diagnoses/views.py,sha256=zGfYxrrzE1qNn4wyoBdgKpfozJb6XpVEcC0sBwmPDXA,1252
 scout/server/blueprints/diagnoses/static/diagnoses.js,sha256=NnPqqDCYsSjVGtRUCfxVWX35B3SqBSGbSH8zx8UVc7o,5341
 scout/server/blueprints/diagnoses/templates/diagnoses/diagnoses.html,sha256=XlkzjQLGkNm9R2Ls7eqMhJE5BEXcUxI0AR-DrMFbIoY,4448
@@ -494,14 +495,14 @@ scout/server/blueprints/genes/templates/genes/gene.html,sha256=X1WR-sHYGnWyhQfgN
 scout/server/blueprints/genes/templates/genes/genes.html,sha256=x6jXKijvuEX9GvIedHW4O_BerYXiWEmAdYT0HTiGnhI,1130
 scout/server/blueprints/genes/templates/genes/layout.html,sha256=cZMLe2cInq24z0sZpPxDm_kEiAe5VQbOR-8XWn6wlvI,1601
 scout/server/blueprints/institutes/__init__.py,sha256=kGSyYrBC1QaEQBDdoMkMLfaowV7roaV5DowICi_0RSQ,65
-scout/server/blueprints/institutes/controllers.py,sha256=M4Dukwi9vpXyU7oTC3KvEUXx38n2tCVDuF6XS4SdWUI,30692
+scout/server/blueprints/institutes/controllers.py,sha256=vVzqjsa6DT_FJgqwRujdZVTe0tclWXNhe5xXjX5zvnE,32444
 scout/server/blueprints/institutes/forms.py,sha256=c76D9mPQNmUc9PN43_2w3tHRXxHO9Drg1J8BkG-2v4g,5658
 scout/server/blueprints/institutes/views.py,sha256=nzpslF6WeKJL_DClu2njJRXupBzoPD6C2j6GI8NWQ-E,8614
 scout/server/blueprints/institutes/static/form_scripts.js,sha256=8Sn7omeXeeUbiXJPfT0Qb4CaBJ_KtZZWw7N2he7EDx0,747
 scout/server/blueprints/institutes/static/select2_darktheme.css,sha256=Nq_va597W_e5y-52B4ClwSJzACq0WFbPU8SIp3DtKIo,1818
 scout/server/blueprints/institutes/static/timeline_styles.css,sha256=Vq48ffIidpQmDQhAzfW47O9mGQZEWdlbMtOE8AK-ZEU,2122
 scout/server/blueprints/institutes/static/variants_list_scripts.js,sha256=gO_ZuJC2jj7Y9x6CEVEVhN1oIE4bIWrTY0_zVcsbRbY,236
-scout/server/blueprints/institutes/templates/overview/cases.html,sha256=cORmM5rOv-hAqg3FmS1SgvW_tipNGOdPZeHk8j2rKrU,14159
+scout/server/blueprints/institutes/templates/overview/cases.html,sha256=flMDRMOT6HFkKjszJ9eM0WYoLEp7DkPnqPh_YuJ8D2k,14372
 scout/server/blueprints/institutes/templates/overview/causatives.html,sha256=KHCPIshkenOjIVWkG9usfLqkORChonGdOiIRw0h1oj0,1593
 scout/server/blueprints/institutes/templates/overview/filters.html,sha256=Dzu5YicmdjW_zGqbCUrb8TMbSUuRaG47itTMwwX7Bm8,3102
 scout/server/blueprints/institutes/templates/overview/gene_variants.html,sha256=Gux54z0-Lov8UwnNabfoWPZ4eRmU5jQ7zIhZRB2o3Mg,7756
@@ -527,14 +528,14 @@ scout/server/blueprints/login/templates/login/users.html,sha256=ClMOKE7jlSAWHa5d
 scout/server/blueprints/managed_variants/__init__.py,sha256=wpDezF_TYKSRkrUGX_aWxdpITMvKvnNqWQtuy6YV1bI,63
 scout/server/blueprints/managed_variants/controllers.py,sha256=HQ9jkTMzVEBLEmswXE7lg8Zj05ENshZeirzIpxm52lk,7281
 scout/server/blueprints/managed_variants/forms.py,sha256=cxpr4Xunvay7_bBy85FjURo869hWGlW1SbsIUTWhPeU,2208
-scout/server/blueprints/managed_variants/views.py,sha256=tRwV-vr1g7nNavN-WajTTY3aPzBUFLKDz4mxhI_107c,2555
-scout/server/blueprints/managed_variants/templates/managed_variants/managed_variants.html,sha256=R6mrih6JMITbhQ_2HgvylAqOq2Hd4JcVtYne45Ua1B4,17295
+scout/server/blueprints/managed_variants/views.py,sha256=wHOClPy2ZCIQvandia90kG6I6IPhxKVOiAnG4esXh-0,2473
+scout/server/blueprints/managed_variants/templates/managed_variants/managed_variants.html,sha256=gE1eP1E1A20z7UUuf36onLU75537rrNlR-P9pbwwtnI,17295
 scout/server/blueprints/panels/__init__.py,sha256=usxBF0O7zNX1d9jt-8DRoFZwcfHHS96Gv87LDr1AgG4,53
 scout/server/blueprints/panels/controllers.py,sha256=jpWSxSdu_U6mxBjxQlnIEBNv0nsJ0aHUecWA3gFhcJw,12898
 scout/server/blueprints/panels/forms.py,sha256=rkuYgrbGYZ2luVgnZyclX92ijVjvQU7S6RGSUi0YFEA,695
-scout/server/blueprints/panels/views.py,sha256=7SsusNQKNm98IFU8lsYsVeuzkTF5Kgqyb_RxF1sYFrI,15765
+scout/server/blueprints/panels/views.py,sha256=mJ9WlkmK-ZIysYrMAEDkQ5Y35b76LsrYE9sdP_BvN2Y,15746
 scout/server/blueprints/panels/templates/panels/gene-edit.html,sha256=ZuXxdvjioxHlC0mz54t4q2KBFvP2qXb5VpNIcMVayVM,3649
-scout/server/blueprints/panels/templates/panels/panel.html,sha256=qJrtU_wCF2FAsMkZYpuqjuQbvVOUqYsOZVmT3iXs_XU,15515
+scout/server/blueprints/panels/templates/panels/panel.html,sha256=TxFAMRWQfveftJ4wxXJ_swxzq3GeIzwWegnoICQvJTk,15468
 scout/server/blueprints/panels/templates/panels/panel_pdf_case_hits.html,sha256=uzfZJiMNQiTa_6u4uMuIbK3VXIs-8Rw-MjKujFttZG8,3438
 scout/server/blueprints/panels/templates/panels/panel_pdf_simple.html,sha256=6fcuiYcm_Gjh0klgQ9AfbpYUJAQrXm0YPAjFwrtmLHs,2677
 scout/server/blueprints/panels/templates/panels/panels.html,sha256=eR-f_Rh3ril-zVA4uBpOOblXm8LMEs3eirwpDQ-Ozrs,13422
@@ -547,7 +548,7 @@ scout/server/blueprints/phenomodels/templates/phenomodels.html,sha256=nUgJIM-HCO
 scout/server/blueprints/phenotypes/__init__.py,sha256=U62KsB1aI_b98M9-Ahy1HfxtPNFYOLUS29c5OVqhRN8,50
 scout/server/blueprints/phenotypes/controllers.py,sha256=Wkg7k96Pw8dkBGdG62qljkgOqy3almGEJdNrnxjeqKc,995
 scout/server/blueprints/phenotypes/views.py,sha256=mote8mMsOHSkrXTt5r7rw0DH-RLW2HBt252o8AG8MxI,1853
-scout/server/blueprints/phenotypes/templates/phenotypes/hpo_terms.html,sha256=SUdWLaxKkNNozkjDxLdlhWrze5rhtEoEYJvpv_urM0U,2080
+scout/server/blueprints/phenotypes/templates/phenotypes/hpo_terms.html,sha256=2qeLQpcujCicZiNr4AS3cvyLEOVF0uh0o5OJWFGRBk8,2161
 scout/server/blueprints/public/__init__.py,sha256=M26IYmBXK-dnMmd3Uc2ZuVpjD_xdKKyYNzz0IXFueKo,53
 scout/server/blueprints/public/views.py,sha256=HSwatmBQB6fA90Mt6Lpv9NNVLSQpPz4NxWyjx4IpyqM,973
 scout/server/blueprints/public/static/GMS-logo-dark.png,sha256=NC5uv6QeLaEKCrXHmGywukREM_GsO6jb4aEIN77UYEc,76765
@@ -586,43 +587,43 @@ scout/server/blueprints/public/static/ideograms/chromosome-X.png,sha256=Dj7npcW_
 scout/server/blueprints/public/static/ideograms/chromosome-Y.png,sha256=KlOsBLZYFVHRvXvTioT-XE57zSWoYeIwIEXo_rzLBR0,1524
 scout/server/blueprints/public/templates/public/index.html,sha256=kl_-1s4HXRGw_PWacRFHG3cHALBBMN54GJVBnAAZ7LE,3626
 scout/server/blueprints/variant/__init__.py,sha256=SlD8-Aoj9Jq9aVTJjtFfsu-0sUVfkzpiEXcH8z9q6dI,54
-scout/server/blueprints/variant/controllers.py,sha256=pX2CD58w6YHeeJ5YowALUwuLx3AlhfXiBMHIkn6diNE,25457
-scout/server/blueprints/variant/utils.py,sha256=qYArApI8U8q7pdVydFNdsu7MpiCxeWmkEIBWY9PTFGw,24051
+scout/server/blueprints/variant/controllers.py,sha256=FmpFXkc1AB7DdfH9SaYpZidZYsb_9b7hG44guUARNkw,25482
+scout/server/blueprints/variant/utils.py,sha256=3Tj2N6VCPMBcIk6gjDw8l6j2VYfoGugEW09hgxoFNY4,24042
 scout/server/blueprints/variant/verification_controllers.py,sha256=eKzP222e7xuFOaQaI9MLOrD9RWtI8uGB1cJYbcXLzF0,10972
 scout/server/blueprints/variant/views.py,sha256=YQ6BXshrJDbPkPXPIwt_JtEqrbgfpzZPXqR4dsSRBt4,14610
 scout/server/blueprints/variant/templates/variant/acmg.html,sha256=i_4LFecWHZSdStw9VWDFjgNcGuDm-XX4VLCyZEYBopY,7315
 scout/server/blueprints/variant/templates/variant/buttons.html,sha256=Sbw4jA6xvsx9yRr9b-5ZF6bce4tqNLFQff5FuWuz9mo,6797
 scout/server/blueprints/variant/templates/variant/cancer-variant.html,sha256=1D9uLIgb06qfhcbl0wB5mRrgARVgfCJfRZhf4wEA2tc,13971
-scout/server/blueprints/variant/templates/variant/components.html,sha256=CCoHXs66lcSs7zHsqJc7O9Yy81DTfSvwoqk2XGp-gYM,20502
+scout/server/blueprints/variant/templates/variant/components.html,sha256=vFMncA2ths7ggwIWkQLfyHAp-yIK4-0L5LcLMnnYRBc,20520
 scout/server/blueprints/variant/templates/variant/gene_disease_relations.html,sha256=mvw7773Gww3AAOtASL61W5e5cYTc4uB8gJ2zr19NIXw,7283
 scout/server/blueprints/variant/templates/variant/rank_score_results.html,sha256=32RfBrpZ_J-1WYE01Bdd5IC9i1MAzXT7GF27OlElk94,2040
 scout/server/blueprints/variant/templates/variant/sanger.html,sha256=0kVnscTw3KUwjR4QOEuNJMOK9eADGEn9qGNtGx2ST7Y,4507
 scout/server/blueprints/variant/templates/variant/str-variant-reviewer.html,sha256=gusmku-14Zw44Zet7PiFWR4n0M4hdD4Qa6w_HbxWQ5A,2231
 scout/server/blueprints/variant/templates/variant/sv-variant.html,sha256=Rn6lAteE2SR8omRRXWVrajcppghoF-tSR23mY4_6Sto,17184
 scout/server/blueprints/variant/templates/variant/tx_overview.html,sha256=turyCoOCCd_N80FakxXfIl7q_WViysz1fwx3j312_Lg,6737
-scout/server/blueprints/variant/templates/variant/utils.html,sha256=Ieb7bhonAzg3PvmWMZt8rqJrxZXbUrzRVVklt8GqXw4,21416
-scout/server/blueprints/variant/templates/variant/variant.html,sha256=hr_K5Z1daHtUPRGhCLSGO1Ltp4ZPNR8DJ5Wd4TA_y6s,18688
-scout/server/blueprints/variant/templates/variant/variant_details.html,sha256=v2XxN1IAVoZikix7s1LVSisLBEa-973HBHHKgoXsdWI,17576
+scout/server/blueprints/variant/templates/variant/utils.html,sha256=EPwtCxHKhtMD5DiBKTnuW0VjJa-b1j7ixPZ54eEW9Kc,21583
+scout/server/blueprints/variant/templates/variant/variant.html,sha256=bgO3kb4u45IrgCPUJrHT4paNDOQzcKx5dw0ZYbBmCsc,18914
+scout/server/blueprints/variant/templates/variant/variant_details.html,sha256=J-pF8LRXFnCxIbNfL7klTLj172rlpWF8PznO4ie9Igc,19921
 scout/server/blueprints/variants/__init__.py,sha256=W1KCz9kEbVlNO0o3NvLitYLQoP_3JSJ5KSjhpcjlUBQ,55
-scout/server/blueprints/variants/controllers.py,sha256=9uBLSoBlFHPX9RjaUQy9pPouzd5m94tqm3IOO2ilGOA,72349
-scout/server/blueprints/variants/forms.py,sha256=6EnYykhPXWqKRO1qISgs7HIJjfxJjrgxtKn1e2e8Voc,8359
-scout/server/blueprints/variants/utils.py,sha256=WfNO1ZmZLajO3dx_fQpUr-TsO7ciHa-1Bsf2vXT6ce4,751
+scout/server/blueprints/variants/controllers.py,sha256=Kg88oWq86nSJfJG8YqO4J2QxpbsLiGR_VwPW0BFMGRo,73074
+scout/server/blueprints/variants/forms.py,sha256=5BRl2mhiqjuOhsjWXDJjfX95im-NIMxKS-oSbeHiYuM,8944
+scout/server/blueprints/variants/utils.py,sha256=ifFBoyigx0A5KPE4iz9NSpyuUeF1bElrb4ohQLD2GlU,919
 scout/server/blueprints/variants/views.py,sha256=h2z5x7_eA0niXlhOAkYI4eduz3je5XGw_EUnbMenuNA,28136
 scout/server/blueprints/variants/static/form_scripts.js,sha256=o3GCboaesA9Sm1HgejS_yQwt0I-NTkvcl56jiBdLqZs,8319
 scout/server/blueprints/variants/templates/variants/cancer-sv-variants.html,sha256=Y7XQZjjrU_cJGU8EEGEF3QzTVvDfEVudFdygYExVxwI,7429
 scout/server/blueprints/variants/templates/variants/cancer-variants.html,sha256=bX9FLoufo72PBDoWp95DVLltxUrbLeuFmZQObP1oAlw,10132
-scout/server/blueprints/variants/templates/variants/components.html,sha256=gr-C36Ah85z8FGEPNewyGvRq8rC6FmdtmMJ8gtLGHFA,13880
-scout/server/blueprints/variants/templates/variants/fusion-variants.html,sha256=UOOlYSx7A1HR1d_13WMPvYgq6cabXYoF4wDQQb9BMBU,7171
+scout/server/blueprints/variants/templates/variants/components.html,sha256=oNeLagTLdOy1SRoDCY2tc7mCK26SD9BlLO8vbSpNEvY,16690
+scout/server/blueprints/variants/templates/variants/fusion-variants.html,sha256=XGaLgWobzeFHwyQLXr_Yq9THssf8tGU91VbFKdGOFBg,4801
 scout/server/blueprints/variants/templates/variants/indicators.html,sha256=BX6Wg8OpsALCGGozR1eXT57D0Ixrf-OFXVg6G20Wjr0,4400
 scout/server/blueprints/variants/templates/variants/mei-variants.html,sha256=0-wYjaiUByDduWMgmRS4AMg3IppPNtjZL1vvAdFuIPI,5994
-scout/server/blueprints/variants/templates/variants/str-variants.html,sha256=wW50J0XzfCGv6mGulA_aq2XAab8vBURESiBe_OLVP1M,9912
+scout/server/blueprints/variants/templates/variants/str-variants.html,sha256=sMM6GiuOU8anACtxrSF6YETsuwWUbEQZyyWhl06ev20,10186
 scout/server/blueprints/variants/templates/variants/sv-variants.html,sha256=SgAdgIPdr7pd2TDB2PJlXOmSAjX4WUslfm4eu0cjIBI,6310
-scout/server/blueprints/variants/templates/variants/utils.html,sha256=5nmdrzRtE6ooCL2CURZhK9NE_ryWdc32OGQTnRHYS1E,46639
-scout/server/blueprints/variants/templates/variants/variants.html,sha256=1bbV5qczQb1iMAdXvJQA61JMHfmjzN6X6ZlIdLa4ZuQ,9316
+scout/server/blueprints/variants/templates/variants/utils.html,sha256=2WriO5n0IGzVw4kvt1D_hz47TAkdxhHsgAfFnfO_sww,49231
+scout/server/blueprints/variants/templates/variants/variants.html,sha256=nfSZXVGmsjjUuRC-54G9UsNBMhlNjnvBafN34uL73tY,9333
 scout/server/extensions/__init__.py,sha256=xeiVMoky1aB89VXz14pVDF78B9Q2r4g8iFMlYSVuIGo,1141
 scout/server/extensions/beacon_extension.py,sha256=sy8YPnGcYBFoasJdBBMt92gXCUidtTNT3_9S1_F7Bwg,9903
 scout/server/extensions/bionano_extension.py,sha256=XoKnAmNauatyJWUr63_gPlWyX1JGZfEXV6ge_bZ7VTk,7128
-scout/server/extensions/clinvar_extension.py,sha256=HzttZ0iAEDw2RW62neqeqKNgBrqnz_f7DbYPWmZp9M0,3252
+scout/server/extensions/clinvar_extension.py,sha256=e6rrpOnUs-rn3gGfiOQT4UlBRRXRLgot51G3WB44wrU,3746
 scout/server/extensions/gens_extension.py,sha256=zqfzI7vOvPqNIkIl-uULJp-bS634p-4C6T7JsMI3tQw,1002
 scout/server/extensions/ldap_extension.py,sha256=zJLWLfumJoU8w19767g014H2eqv5VJrn-VWPEVeWCj4,2706
 scout/server/extensions/loqus_extension.py,sha256=EqRUfI8QV8OIeAEFGEvVkF4N6XTqPw8N8yXRfiSh5x0,12452
@@ -659,9 +660,9 @@ scout/utils/hgvs.py,sha256=P5i3fIK8WZZlUnjZ8XpMDUG5KDXRCDSOs55DfK5acsc,898
 scout/utils/link.py,sha256=RuCUwnOtGDf9ACaC64_1FqWyWDaBv7dqNEGjmCq59kk,9001
 scout/utils/md5.py,sha256=KkgdxOf7xbF9AF40ZjQKCgWaxFWJ9tp9RKjd8SU6IoA,649
 scout/utils/scout_requests.py,sha256=owL_XvsrQJG4e0EUuUiY6y_hqKKep2Qljg1nMukzp8Y,12855
-scout_browser-4.81.dist-info/LICENSE,sha256=TM1Y9Cqbwk55JVfxD-_bpGLtZQAeN9RovQlqHK6eOTY,1485
-scout_browser-4.81.dist-info/METADATA,sha256=FHj21oEF5pMZ602x8sN_dsOZaY1-4j9d1w7Zex1oklY,14196
-scout_browser-4.81.dist-info/WHEEL,sha256=oiQVh_5PnQM0E3gPdiz09WCNmwiHDMaGer_elqB3coM,92
-scout_browser-4.81.dist-info/entry_points.txt,sha256=E6vGg1OwvvKYIsXdHxmlIj7RmcTF0K77Q_PU8laImGg,46
-scout_browser-4.81.dist-info/top_level.txt,sha256=qM75h71bztMaLYsxn1up4c_n2rjc_ZnyaW6Q0K5uOXc,6
-scout_browser-4.81.dist-info/RECORD,,
+scout_browser-4.82.2.dist-info/LICENSE,sha256=TM1Y9Cqbwk55JVfxD-_bpGLtZQAeN9RovQlqHK6eOTY,1485
+scout_browser-4.82.2.dist-info/METADATA,sha256=QYoeVAZXLiAZ03LhP9VPsklCcz0fasyK60PvsFE8HGs,14280
+scout_browser-4.82.2.dist-info/WHEEL,sha256=oiQVh_5PnQM0E3gPdiz09WCNmwiHDMaGer_elqB3coM,92
+scout_browser-4.82.2.dist-info/entry_points.txt,sha256=E6vGg1OwvvKYIsXdHxmlIj7RmcTF0K77Q_PU8laImGg,46
+scout_browser-4.82.2.dist-info/top_level.txt,sha256=qM75h71bztMaLYsxn1up4c_n2rjc_ZnyaW6Q0K5uOXc,6
+scout_browser-4.82.2.dist-info/RECORD,,