scout-browser 4.79.1__py3-none-any.whl → 4.81__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (46) hide show
  1. scout/__version__.py +1 -1
  2. scout/adapter/mongo/variant.py +2 -2
  3. scout/constants/__init__.py +3 -0
  4. scout/constants/clinvar.py +3 -0
  5. scout/constants/indexes.py +14 -12
  6. scout/constants/variants_export.py +11 -0
  7. scout/models/case/case_loading_models.py +45 -23
  8. scout/models/clinvar.py +1 -0
  9. scout/parse/variant/variant.py +27 -23
  10. scout/server/blueprints/api/views.py +12 -0
  11. scout/server/blueprints/cases/controllers.py +72 -6
  12. scout/server/blueprints/cases/templates/cases/case.html +1 -22
  13. scout/server/blueprints/cases/templates/cases/case_bionano.html +2 -0
  14. scout/server/blueprints/cases/templates/cases/case_report.html +135 -129
  15. scout/server/blueprints/cases/templates/cases/case_sma.html +2 -0
  16. scout/server/blueprints/cases/templates/cases/collapsible_actionbar.html +12 -2
  17. scout/server/blueprints/cases/templates/cases/gene_panel.html +45 -22
  18. scout/server/blueprints/cases/templates/cases/utils.html +52 -14
  19. scout/server/blueprints/cases/views.py +22 -0
  20. scout/server/blueprints/clinvar/controllers.py +2 -0
  21. scout/server/blueprints/clinvar/form.py +5 -0
  22. scout/server/blueprints/clinvar/templates/clinvar/multistep_add_variant.html +30 -5
  23. scout/server/blueprints/diagnoses/templates/diagnoses/diagnoses.html +1 -1
  24. scout/server/blueprints/institutes/static/select2_darktheme.css +62 -0
  25. scout/server/blueprints/institutes/templates/overview/institute_settings.html +1 -1
  26. scout/server/blueprints/panels/templates/panels/panel.html +15 -1
  27. scout/server/blueprints/panels/templates/panels/panel_pdf_case_hits.html +2 -2
  28. scout/server/blueprints/panels/templates/panels/panel_pdf_simple.html +3 -3
  29. scout/server/blueprints/panels/views.py +5 -1
  30. scout/server/blueprints/variant/controllers.py +5 -2
  31. scout/server/blueprints/variant/templates/variant/variant_details.html +32 -20
  32. scout/server/blueprints/variants/controllers.py +179 -93
  33. scout/server/blueprints/variants/templates/variants/components.html +5 -4
  34. scout/server/blueprints/variants/templates/variants/fusion-variants.html +1 -1
  35. scout/server/blueprints/variants/views.py +30 -15
  36. scout/server/config.py +3 -0
  37. scout/server/templates/report_base.html +3 -3
  38. scout/server/templates/utils.html +68 -38
  39. scout/server/utils.py +25 -3
  40. {scout_browser-4.79.1.dist-info → scout_browser-4.81.dist-info}/METADATA +1 -1
  41. {scout_browser-4.79.1.dist-info → scout_browser-4.81.dist-info}/RECORD +45 -45
  42. scout/server/blueprints/cases/templates/cases/clinvar.html +0 -48
  43. {scout_browser-4.79.1.dist-info → scout_browser-4.81.dist-info}/LICENSE +0 -0
  44. {scout_browser-4.79.1.dist-info → scout_browser-4.81.dist-info}/WHEEL +0 -0
  45. {scout_browser-4.79.1.dist-info → scout_browser-4.81.dist-info}/entry_points.txt +0 -0
  46. {scout_browser-4.79.1.dist-info → scout_browser-4.81.dist-info}/top_level.txt +0 -0
@@ -63,12 +63,72 @@
63
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  {% endmacro %}
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  {% macro comments_panel(institute, case, current_user, comments, variant_id=None) %}
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- <div class="card">
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- {% set comments = comments|list %}
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- <h6 class="comments-title ms-3 mt-2"><i class="far fa-comments"></i> Comments ({{ comments|length }})</h6>
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- <div class="list-group" style="max-height:200px; overflow-y: scroll;">
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- {% for comment in comments %}
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- <div class="row ms-1 alert mb-0 {% if loop.index % 2 %}even{% else %}odd{% endif %}">
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+ <div class="card">
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+ {% set comments = comments|list %}
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+ <h6 class="comments-title ms-3 mt-2"><i class="far fa-comments"></i> Comments ({{ comments|length }})</h6>
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+ {% if comments|length >0 %}
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+ <div class=" card-body">
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+ {% set visible_comments= comments[:3]|list %}
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+ {% set expandable_comments= comments [3:]|list %}
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+ <div class="accordion-item">
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+ <div id="visible-comments-content" class="accordion-collapse collapse show" aria-labelledby="expandable-comments-heading">
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+ <div class="accordion-body p-0" >
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+ {% for comment in visible_comments %}
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+ {% set item_index = loop.index %}
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+ {{ single_comment(institute, case, current_user, comment, item_index) }}
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+ {% endfor %}
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+ {% if expandable_comments|length >0 %}
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+ <div class="accordion-item border-0">
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+ <div id="expandable-comments-content" class="accordion-collapse collapse" aria-labelledby="expandable-comments-heading">
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+ <div class="" >
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+ {% for comment in expandable_comments %}
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+ {% set item_index = loop.index %}
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+ {{ single_comment(institute, case, current_user, comment, item_index+3) }}
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+ {% endfor %}
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+ </div>
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+ </div>
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+ <button id="expandable-comments-control" class="accordion-button collapsed" style="background-color:var(--bs-body-bg);color:var(--bs-body-color)" type="button" data-bs-toggle="collapse" data-bs-target="#expandable-comments-content" aria-expanded="false" aria-controls="expandable-comments-content"
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+ onclick="{let thisElement=event.currentTarget; let children= thisElement.querySelectorAll('span'); Array.from(children).forEach(child=> child.classList.toggle('d-none'));}">
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+ <span>See more comments...</span>
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+ <span class="d-none">Minimise comments</span>
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+ </button>
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+ </div>
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+ {% endif %}
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+ </div>
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+ </div>
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+ </div>
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+ </div> <!-- end of <div class="list-group" -->
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+ {% endif %}
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+ <div class="card-footer" style="border-radius:inherit;">
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+ <form action="{{ url_for('cases.events', institute_id=institute._id, case_name=case.display_name, variant_id=variant_id, _anchor='comments') }}" method="POST">
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+ <input type="hidden" name="link" value="{{ url_for('variant.variant', institute_id=institute._id, case_name=case.display_name, variant_id=variant_id) if variant_id else url_for('cases.case', institute_id=institute._id, case_name=case.display_name) }}">
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+ <div class="row">
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+ <div class="col">
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+ <textarea class="form-control" name="content" placeholder="Leave a comment"></textarea>
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+ </div>
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+ </div>
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+ <div class="row mt-3">
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+ {% if variant_id %}
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+ <div class="col-sm-6">
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+ <div class="form-check">
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+ <input class="form-check-input" type="checkbox" name="level" id="check-level" value="global">
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+ <label class="form-check-label" for="check-level">
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+ Comment globally
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+ </label>
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+ </div>
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+ </div>
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+ {% endif %}
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+ <div class="col-sm-{{ 6 if variant_id else 12 }}">
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+ <button class="btn btn-secondary form-control" type="submit">Comment</button>
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+ </div>
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+ </div>
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+ </form>
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+ </div>
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+ </div>
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+ {% endmacro %}
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+
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+ {% macro single_comment(institute, case, current_user, comment, index) %}
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+ <div class="row mx-0 p-3 mb-0 {% if index % 2 %}even{% else %}odd{% endif %}">
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  <div class="col-7 text-break">{{ comment.content }}</div>
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  <div class="col-5 text-end">
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  <form method="POST" action="{{ url_for('cases.events', institute_id=institute._id, case_name=case.display_name, event_id=comment._id,_anchor='comments') }}">
@@ -86,43 +146,13 @@
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  {% endif %}
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  {% if comment.user_id == current_user.email %}
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  <button class="btn btn-link btn-sm" type="submit" name="remove"><i class="fa fa-remove"></i></button>
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- <button class="btn btn-link btn-sm" type="button" data-bs-toggle="modal" data-bs-target="#editComment_{{loop.index}}"><i class="fa fa-edit"></i></button>
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+ <button class="btn btn-link btn-sm" type="button" data-bs-toggle="modal" data-bs-target="#editComment_{{index}}"><i class="fa fa-edit"></i></button>
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  {% endif %}
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  </small>
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  </form>
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  </div>
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  </div>
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- {{ edit_comment(institute, case, current_user, comment, loop.index) }}
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- {% endfor %}
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- </div> <!-- end of <div class="list-group" -->
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- <div class="card-footer">
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- <form action="{{ url_for('cases.events', institute_id=institute._id, case_name=case.display_name, variant_id=variant_id, _anchor='comments') }}" method="POST">
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- <input type="hidden" name="link" value="{{ url_for('variant.variant', institute_id=institute._id, case_name=case.display_name, variant_id=variant_id) if variant_id else url_for('cases.case', institute_id=institute._id, case_name=case.display_name) }}">
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- <div class="row">
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- <div class="col">
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- <textarea class="form-control" name="content" placeholder="Leave a comment"></textarea>
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- </div>
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- </div>
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- <div class="row mt-3">
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- {% if variant_id %}
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- <div class="col-sm-6">
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- <div class="form-check">
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- <input class="form-check-input" type="checkbox" name="level" id="check-level" value="global">
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- <label class="form-check-label" for="check-level">
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- Comment globally
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- </label>
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- </div>
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- </div>
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- {% endif %}
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- <div class="col-sm-{{ 6 if variant_id else 12 }}">
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- <button class="btn btn-secondary form-control" type="submit">Comment</button>
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- </div>
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- </div>
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- </form>
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- </div>
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- </div>
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-
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-
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+ {{ edit_comment(institute, case, current_user, comment, index) }}
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  {% endmacro %}
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  {% macro edit_comment(institute, case, current_user, comment, index) %}
scout/server/utils.py CHANGED
@@ -1,4 +1,5 @@
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  """Common utilities for the server code"""
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+
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  import datetime
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  import logging
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  import os
@@ -10,7 +11,7 @@ from typing import Dict, Optional, Tuple
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  import pdfkit
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  from bson.objectid import ObjectId
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- from flask import abort, flash, render_template, request
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+ from flask import abort, current_app, flash, render_template, request
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  from flask_login import current_user
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  LOG = logging.getLogger(__name__)
@@ -205,7 +206,28 @@ def user_institutes(store, login_user):
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  return institutes
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- def case_has_alignments(case_obj):
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+ def case_has_chanjo_coverage(case_obj: dict):
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+ """Set case_obj["chanjo_coverage"] to True if there is an instance of chanjo available and case has coverage stats in chanjo."""
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+
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+ chanjo_instance: bool = bool(current_app.config.get("SQLALCHEMY_DATABASE_URI"))
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+ if case_obj.get("track", "rare") != "cancer" and chanjo_instance:
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+ case_obj["chanjo_coverage"] = True
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+
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+
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+ def case_has_chanjo2_coverage(case_obj: dict):
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+ """Set case_obj["chanjo_coverage"] to True if if there is an instance of chanjo available and case has coverage stats in chanjo2."""
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+
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+ chanjo2_instance: bool = bool(current_app.config.get("CHANJO2_URL"))
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+ if chanjo2_instance is False:
222
+ return
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+ for ind in case_obj.get("individuals", []):
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+ ind_d4: str = ind.get("d4_file")
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+ if ind_d4 and os.path.exists(ind_d4):
226
+ case_obj["chanjo2_coverage"] = True
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+ return
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+
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+
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+ def case_has_alignments(case_obj: dict):
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  """Add info on bam/cram files availability to a case dictionary
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  Args:
@@ -219,7 +241,7 @@ def case_has_alignments(case_obj):
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  return
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- def case_has_mt_alignments(case_obj: Dict):
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+ def case_has_mt_alignments(case_obj: dict):
223
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  """Add info on MT bam files availability to a case dictionary
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246
 
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  Args:
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: scout-browser
3
- Version: 4.79.1
3
+ Version: 4.81
4
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  Summary: Clinical DNA variant visualizer and browser.
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  Home-page: https://github.com/Clinical-Genomics/scout
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  Author: Måns Magnusson
@@ -1,5 +1,5 @@
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  scout/__init__.py,sha256=Z4liXvmEcLkC67ElsWvYHfemPKdWgWI5O6MB6XlDM8M,232
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- scout/__version__.py,sha256=Goonfb0vD5fXvQAAPpTuHfde68H9VWljEy7FYo7Nsgo,23
2
+ scout/__version__.py,sha256=VeFs5riF3Z37kcJaV1kAfC-gVFhM1kN-tnvgq4X9qaY,21
3
3
  scout/adapter/__init__.py,sha256=-iX_hx2NI1EMAqX0pMd5_90Nnd9uvIMxv9EbefYBzsc,86
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  scout/adapter/client.py,sha256=0VR5LRPEqZg_bAxQte1RGMxV8BSiQordbPs57PaZTlI,1512
5
5
  scout/adapter/mongo/__init__.py,sha256=NdHYCUXWUAuX5cUS3-6HCws2hW9uoGep8i0SC-oJd3k,31
@@ -25,7 +25,7 @@ scout/adapter/mongo/query.py,sha256=f91GL0OVZ1T-fLFaZWIbjNh1yd0qvZzlSZQeQL6orvc,
25
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  scout/adapter/mongo/rank_model.py,sha256=wvDNI4OLf-f7ZYZ_Q_6qi0myxOJCNNJR_-2-_0u2K2M,5712
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  scout/adapter/mongo/transcript.py,sha256=3U1qtyxZ1DnrzdBJm_emJXISMYFKJuX_zAKynUt8NMY,7417
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  scout/adapter/mongo/user.py,sha256=QoQnRWqi_dV3ZwGzBonEU6Ap9TgMDf2x_C5UIqG0pa0,2569
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- scout/adapter/mongo/variant.py,sha256=AIAL1xcXxuQGQAiFrn1uafA6efBksyIslbiQWNnlYsc,34130
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+ scout/adapter/mongo/variant.py,sha256=f3yU3Wu5ZTarDsUs314kjcM-UAFdkPfSjPjyKsrMYg8,34143
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  scout/adapter/mongo/variant_events.py,sha256=LjUtxJLo3wGBjMI55wPs7sNPeDLq9POw6fgz0dzeuFM,31842
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  scout/adapter/mongo/variant_loader.py,sha256=hMkRq5Bnk9DLEExV_IXOSY7FUzlArkZ0PBiytRqJG4E,27587
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  scout/build/__init__.py,sha256=GUWEaXTpwsJil_KtrXBQJpZIwCQFSgo8NlK49R9IkA8,521
@@ -123,22 +123,22 @@ scout/commands/view/intervals.py,sha256=8Pofxy0DwL2Euh3SdnTLLWsU6DjLNOwIGdxeCS83
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  scout/commands/view/panels.py,sha256=a0fQcP9-SDPuRYV7aEgIGUCYaMN6V47h6finpcdoomU,1098
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  scout/commands/view/transcripts.py,sha256=59WyNNp7zHPJIz9QgzrkoeKaSXTtuLli0VuL8IidEmY,1277
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  scout/commands/view/users.py,sha256=MKlmhDYRM7Yf-Trmi1ijEuqsDIUn326bdFADyDs7XYg,832
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- scout/constants/__init__.py,sha256=qqZjYEsb1fSftDdZF7f4boPBfKpDcJVlAOTstDu50l0,6707
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+ scout/constants/__init__.py,sha256=u-faDDRxNzCeAKryKLdFSuIDSjrg6_BUj-5BYzXzXWs,6827
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  scout/constants/acmg.py,sha256=fjq_UFLkJPh7ZfuW-l4KH_lWKAGhNiKhlaPu1G_WXo4,13091
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  scout/constants/case_tags.py,sha256=Pr9Go_I8udRnrdcRcZdu4swS0Jpdwf8hUdDVGR6d9yY,10937
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- scout/constants/clinvar.py,sha256=SI80eC1ZA8Aa3PXR7FUCfq24qaW4lsnmjMk4gVUHs4I,5424
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+ scout/constants/clinvar.py,sha256=2YdsHDy3mprWjcJEMyejLzkRLtm891xO9ckFQQk10cw,5587
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  scout/constants/clnsig.py,sha256=2u_avIzWO_IPJGcTOoSB7_xqgu5JBl_zZZfT8UVpY90,1359
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  scout/constants/disease_parsing.py,sha256=m10iPVzdTsdx7v9ZWvdLjlBrQKR_uyMeJwPbokO9SHY,688
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  scout/constants/file_types.py,sha256=OQ3g1uo4jvhiLlPV1MBoqctWGc4YrS2wnGS6PoflIAA,1016
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  scout/constants/filters.py,sha256=8nRRb7_17G4P8zMgJ7qrK4NAAuGbPLl-pU5GPP3L4eE,889
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  scout/constants/gene_tags.py,sha256=tdzDh6ukJRtHiC8X5YkldijZCS0KrEeXj95sLNlqxuc,3852
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  scout/constants/igv_tracks.py,sha256=3-3VzFpCTfuhbEBAitbpY2lQRYXYf-poya3DXs0g9yE,4500
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- scout/constants/indexes.py,sha256=nD8DLFM29MgCXTU9cjLUaKKXrhb3DwGwt7tIOIbLCR4,4719
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+ scout/constants/indexes.py,sha256=6hX64eouUQx6kdPd1rTGEQAM9htDaEPwjy35USVbkJ4,4842
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  scout/constants/phenotype.py,sha256=MrbXirisR_7GPnxV3NOj3-BoM9CvtGgFZj7PfJu85RM,2331
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  scout/constants/query_terms.py,sha256=NSymLgwhcxuOddl-Mvh22MahJD6rT2zjopr-x4RVOd0,1479
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  scout/constants/so_terms.py,sha256=aJcQv3wgpZylVhqSJH854WS8xSARDxWGnW6I5mG1egE,4321
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  scout/constants/variant_tags.py,sha256=HZo_9adwSaoQTTmro6PdXNdiPYF4dNAhK19674wGC8k,16131
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- scout/constants/variants_export.py,sha256=AwNq5iR1BKmmnkbW3c0O6DeZIItHZ2arAeuRvQEQSJM,1758
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+ scout/constants/variants_export.py,sha256=ee3dyM6CifvPUU4zsVwYzG9Dptn3qBBhP72olHHJ6i4,1942
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  scout/demo/643594.clinical.SV.vcf.gz,sha256=Y5CcTI7vJAS53ch8OHPR80X44rArHZoQeQZGl8AHmq0,11927
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  scout/demo/643594.clinical.SV.vcf.gz.tbi,sha256=1CPB8ftoYF3gjRfqG0xMQlVMD1lY0xSdXp_KrJbfzac,1284
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  scout/demo/643594.clinical.mei.vcf.gz,sha256=SOkbn0eg9kGbh3hear1XRaAwPQOyekMmNASx2pRtgGU,452538
@@ -377,7 +377,7 @@ scout/log/handlers.py,sha256=nwcSeqwtcesiIiEnpVOm7vTugDTOBodP6apm9Z1LIqk,1350
377
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  scout/log/log.py,sha256=7zREYDleYk_dV2L8dcJHeJqOxcc7enqBobWGzElnSGA,1685
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  scout/models/__init__.py,sha256=xfMJsbQbGB1ZMa5zhS0S_R0udxZ4PX8h24NtnJ2gIt0,117
379
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  scout/models/acmg_evaluation.py,sha256=Rn8GvbcUjMS1ZjDaPxuxn2cwWuESxeHOadZn4SREyeo,676
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- scout/models/clinvar.py,sha256=TSC8ZjRn47stiJ_kQk75fkAJIoGiCvE6HM88E2pk00o,3054
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+ scout/models/clinvar.py,sha256=fTmQYV3yRxQn1JBOwKnovYmkl19H14HKRE2zY9JA93U,3102
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  scout/models/disease_term.py,sha256=KFrIkoyImhVDf4YAMYyluQZvDE9GNEa533M_4IMeIlQ,803
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  scout/models/event.py,sha256=2v9K7hbSa6bgadolGnGL7OymSibNGRyTZXlnL_SrFTM,1863
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  scout/models/hgnc_map.py,sha256=fZ1QE2-FxXZ9LB4yQeH4XLjL_ZMdwZzjlt05Lwaw1TM,4441
@@ -389,7 +389,7 @@ scout/models/phenotype_term.py,sha256=U07Pg5PCsOAu-g_HXbyifVy3sK1QyzDYqH3D4qfbo7
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  scout/models/user.py,sha256=oercrjpf9fLomqAcN0Fv1BL_XPjOrS_vchURo0RP7es,1134
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  scout/models/case/__init__.py,sha256=Sqczn7Wm9KYZtPGAHCvwX_6j9vlaK-0myJtSDlS-448,121
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  scout/models/case/case.py,sha256=7r-lR5jr3hNyM0jo-KxQDY7CLjtgtzu26PHOalx1s68,5213
392
- scout/models/case/case_loading_models.py,sha256=XH_o1RJ7fiMrB9a5TYHy5OPP_5hLurs6Cm-uLI96_Ec,19180
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+ scout/models/case/case_loading_models.py,sha256=D1WYdkezb71MV-f0UM9OVjiS53zHQuS0ArS704508rs,20187
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  scout/models/variant/__init__.py,sha256=H-IZ2hSTSVS28S8FZzA8j2Cyu1PHQFXyMWJFtCucPAk,40
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  scout/models/variant/gene.py,sha256=98CG_JcAklGGFIrUulf1_olQalV65kXQO-gOf7VQZ0A,1095
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  scout/models/variant/transcript.py,sha256=rfflEbTs7Bn4HDENqrxtGopQ_0HKnrVLLyBcrj4NpwM,1720
@@ -426,16 +426,16 @@ scout/parse/variant/managed_variant.py,sha256=qwmi2sPLwGZM5izSsMpvhQ9vfMHREiwiIz
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  scout/parse/variant/models.py,sha256=NrqLXu7PxpIQ0NmjGRIEk4vS_y972VPiexLsZCZpOn0,507
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- scout/parse/variant/variant.py,sha256=Z6BkLr_QcEqLo5mCu1mv8zQewFaRPOwJnl4GaFk2wTE,23010
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+ scout/parse/variant/variant.py,sha256=UVkN2uETtlbjKjTXdtyxDWmiBFRdVschcpd2tt98ZKY,23136
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  scout/resources/__init__.py,sha256=MNY3UdgbvOGoVnwGQly2HyOtMfkdPXqnN-sbe_XrOJ8,337
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  scout/resources/cytoBand_hg19.txt.gz,sha256=pheUD5b9NlVuvwwnbKwDc2FG80Yg70gvPxVXP-Sqd3k,6147
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  scout/server/__init__.py,sha256=iwhKnzeBJLKxpRVjvzwiRE63_zNpIBfaKLITauVph-0,24
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  scout/server/app.py,sha256=ShKtLBJCz9ekCStMkDrinoeBd58ieRH64CmlQTgYbbw,11891
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  scout/server/auto.py,sha256=8B6GwfOaUChkTLuLgYQDFMWlxGuHkEegF1argH2G2Ik,401
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- scout/server/config.py,sha256=5ju-z36PRm9DFXZiIey1-N2Ctoj3WR2RIgJ259jP2pQ,5110
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+ scout/server/config.py,sha256=Ld9Vznr9cyss-PS8Av1OH4H96sDpzf8ZU3aWTNjTeqo,5228
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  scout/server/links.py,sha256=TVAyn4_vvKpiZjIEIMdbNZReNrCRgOfvV8ZHCqlgWy0,26996
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- scout/server/utils.py,sha256=yLXi6Lelaw1Pn0We-q1SP2n3ZlnHQ4cyznRVFZ5yo_k,11111
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+ scout/server/utils.py,sha256=u_ZzkjPz2Hz1kzZGGjCjzQvjBJAOPtlSu_tNJFII8L0,12021
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  scout/server/blueprints/__init__.py,sha256=iwhKnzeBJLKxpRVjvzwiRE63_zNpIBfaKLITauVph-0,24
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  scout/server/blueprints/alignviewers/__init__.py,sha256=XMVed2ekVUAvroqENDHSr2pwM8otqau8ZA-rbH1T2U8,59
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  scout/server/blueprints/alignviewers/controllers.py,sha256=05_0kPA3mCN981Od-MtY3g8Jfk3nc61FSjYwNVUPP3U,12285
@@ -445,37 +445,36 @@ scout/server/blueprints/alignviewers/templates/alignviewers/igv_sashimi_viewer.h
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  scout/server/blueprints/alignviewers/templates/alignviewers/igv_viewer.html,sha256=PTj6pn_f3sCdfhyJlKlrGS6Qe0UnEVj__Q31WZPsEhQ,6426
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  scout/server/blueprints/alignviewers/templates/alignviewers/utils.html,sha256=vr1Ap-yvii02V_XrM3nXG8RoHcda-nfCpTINWUMFeso,205
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  scout/server/blueprints/api/__init__.py,sha256=HR6HjS7ot1K_8Lt5eQdNT154z_FCdHGSigy8r2LpNCI,26
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- scout/server/blueprints/api/views.py,sha256=CMZ7oAkvw2ZIo7XbAOBbHxLo-SqjdiKisOdab_h0CzM,3437
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+ scout/server/blueprints/api/views.py,sha256=pbl78wfhrm1T8JmiJDYF3BbTbfFrlF-hQRbuv2GWI0s,3729
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  scout/server/blueprints/cases/__init__.py,sha256=_c17kPFITFYcIVphF4V9bf0PZBer8bU3rtVWQnljKDU,52
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- scout/server/blueprints/cases/controllers.py,sha256=RxYXRR3Ln8hfmp4iAmen9Xu4Akp3XxM3y1hAq3y5RPo,53785
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- scout/server/blueprints/cases/views.py,sha256=0MikCLSJUkQBbT3vNIAWefD57_6lZ4302Zx52LMygB8,42685
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+ scout/server/blueprints/cases/controllers.py,sha256=Wh899tGI6u5kry_oCd_LeEYnh31lzM6VlLsQMqLOHlg,56208
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+ scout/server/blueprints/cases/views.py,sha256=Ne1ppLKe2Yf-kvgdkz7z0RIqBFtmRf1ZeFQ3czuswqs,43639
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  scout/server/blueprints/cases/static/madeline.js,sha256=KHxKMBVlYVJODNu5QkY9hhsGkDJNoaCoCZZ0DRu0YN0,1175
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- scout/server/blueprints/cases/templates/cases/case.html,sha256=nXtyGOzAkAxfB3UKalIciRHFBamRevRDj2JovpMnj2c,35863
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- scout/server/blueprints/cases/templates/cases/case_bionano.html,sha256=4tC7g3ZFO8fnQt8VMd8Cgkhe5LeVcbpRqcg0N0Y_dvo,6719
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- scout/server/blueprints/cases/templates/cases/case_report.html,sha256=rbQ8rwtfw2iJj1wc2QBXQ9BwtIoCvXJgz_NABP7hfuc,61287
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- scout/server/blueprints/cases/templates/cases/case_sma.html,sha256=1pWVHEjtXvv0ra5BXgHH8WaPyYwtdYJ4LSxHYTdtPGU,5297
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+ scout/server/blueprints/cases/templates/cases/case.html,sha256=4u3XfrgcV1cZFWxQ5vmKJdWV-gEmnCr9SdP_rrUNt6o,35110
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+ scout/server/blueprints/cases/templates/cases/case_bionano.html,sha256=kRnhlflW80f4dXZeWh0CM9eM7Azmst64vvljxoLLozw,6774
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+ scout/server/blueprints/cases/templates/cases/case_report.html,sha256=SatY7nAY67bQrP5kr4FYJ0FVcN7q3xrt-CH4WGC8X6c,62999
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+ scout/server/blueprints/cases/templates/cases/case_sma.html,sha256=9kxXy6PHsSsou9sJOb0-xFoPAjqP9XBonj_wt_-9Cgw,5356
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  scout/server/blueprints/cases/templates/cases/case_tabular_view.html,sha256=ko-LDUKmIoTazMZ2nFWvPEZsgObU07RwqIkDYFjokoY,4317
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- scout/server/blueprints/cases/templates/cases/clinvar.html,sha256=6gP4jcSyJgftLu_wpO55RH_LNMGVHK45iVdvTO9YrUU,1992
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- scout/server/blueprints/cases/templates/cases/collapsible_actionbar.html,sha256=suiuW1oKIONoo4gO3rJyBE-fOCSSc425JpMNfvL8q10,28735
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+ scout/server/blueprints/cases/templates/cases/collapsible_actionbar.html,sha256=j5PYeC-YtI8kK6oYHMahmHWZ-8BG8RzoB6qRSkBAHSo,29256
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  scout/server/blueprints/cases/templates/cases/diseases.html,sha256=ETTQI0Nrl_v86NoX9mFZcvWD-qM1IJoqPmHPWn__Grw,1677
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- scout/server/blueprints/cases/templates/cases/gene_panel.html,sha256=7ei2VDn7EVvoZSwOFyZK7LtVuLnvj0MmR_f2L_s88i8,11555
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+ scout/server/blueprints/cases/templates/cases/gene_panel.html,sha256=BIAHYtbbUhBW9TlF0r_l8sSAvslCnKW9whgcCiB1c3E,12640
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  scout/server/blueprints/cases/templates/cases/index.html,sha256=oUmjFyUvwP4yo21CxcWy-6eepMFI65hpznMEpSEqKfM,1207
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  scout/server/blueprints/cases/templates/cases/individuals_table.html,sha256=Y_OeIsEnLe_0_AzqgZdO4KMyoQ94auRLnVboLgBUPW8,11861
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  scout/server/blueprints/cases/templates/cases/institutes_sidebar.html,sha256=u0oPGHJ0ipZ1LkjHkbwlWfkUWc1h6XH1nh3tkbX17z0,4546
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  scout/server/blueprints/cases/templates/cases/matchmaker.html,sha256=1vwGBhM4HgvRMlO1foKBAwV-Wfvfs1MRvzteOETCZeM,13142
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  scout/server/blueprints/cases/templates/cases/phenotype.html,sha256=38BIwPzTgv5_9BLaTi8beafU2fOrVIfnlV-s88WAx3k,15982
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- scout/server/blueprints/cases/templates/cases/utils.html,sha256=5O-qbU-H5cmpt2VfwPqih4kLmXyoe0HvOisNTEpExO0,31328
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+ scout/server/blueprints/cases/templates/cases/utils.html,sha256=XhKy4XE28C0NzGBZHHozRT3dEFdb2DW676T88pPzWWo,33953
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  scout/server/blueprints/clinvar/__init__.py,sha256=BV3aH2AbiA2WWrUEMbGd0H9MefFd2eTsRE9ShywbzpI,30
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- scout/server/blueprints/clinvar/controllers.py,sha256=OPkegOqOFoWh17K6WQdzcR1iybhGhLMU5jiqF066kSM,23909
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- scout/server/blueprints/clinvar/form.py,sha256=c6c30Nq5iOjrazXkhOCXMX8t-_MSqP3guY-vDFuMsYc,4941
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+ scout/server/blueprints/clinvar/controllers.py,sha256=iy1VtqIXKJMCqCafZOmnDOArG8VfUX1oIel58ibvnzI,24066
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+ scout/server/blueprints/clinvar/form.py,sha256=d0EBJouYsk-kIpGtAr_SfNCyLoBNchfLt25uFR9HxO0,5155
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  scout/server/blueprints/clinvar/views.py,sha256=TbuzlEixW63NDSO49I6bE0jItt80ERA5uWQ94sKW9c0,5571
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  scout/server/blueprints/clinvar/templates/clinvar/clinvar_howto.html,sha256=phFsRl6Hv94sy4GueBN0MXYbQsW6qmR1NoH-3Iwt2zs,4852
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  scout/server/blueprints/clinvar/templates/clinvar/clinvar_submissions.html,sha256=Jf36lkt13nN6JZ2wJ3IFI4Dy_HHWV07uTO6Xkwn2gHo,16647
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- scout/server/blueprints/clinvar/templates/clinvar/multistep_add_variant.html,sha256=dUJp0sc7qzt8vMk2W_UE9t5SzvmsbHj5c2SzQe6AeXQ,29137
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+ scout/server/blueprints/clinvar/templates/clinvar/multistep_add_variant.html,sha256=X1F32zLAwCi1ViX9S8Ix7oeA3VaJORZMQ-1PGYP-o9c,31029
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  scout/server/blueprints/dashboard/__init__.py,sha256=9YTjGeFexyEbl4P-gs7j8VEjyhnVwHZFfz57eTtod1M,69
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  scout/server/blueprints/dashboard/controllers.py,sha256=n85n1lm1MJulPBhKk3VrUH8EXaVqt9TrP0Dolb0U7F0,9582
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  scout/server/blueprints/dashboard/forms.py,sha256=CgwCHGZcxi08-04hwlw-rXZau_C9X2Qoq1ayTd533qY,826
@@ -486,7 +485,7 @@ scout/server/blueprints/diagnoses/__init__.py,sha256=sORNuH8TXn63RI7KVRSVrMrPwTz
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  scout/server/blueprints/diagnoses/controllers.py,sha256=Y9jH74BumguJga_vUQwQpeMIviQXqtQdvJzaPCfw6oA,1596
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- scout/server/blueprints/diagnoses/templates/diagnoses/diagnoses.html,sha256=5s8Fe_07hkSagYAtkplcjceHsK9xGK57OyPnq8gPt3c,4432
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+ scout/server/blueprints/diagnoses/templates/diagnoses/diagnoses.html,sha256=XlkzjQLGkNm9R2Ls7eqMhJE5BEXcUxI0AR-DrMFbIoY,4448
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  scout/server/blueprints/diagnoses/templates/diagnoses/disease_term.html,sha256=8EG07B5kD9FqiYinGOP2JR-y8yontoEvqwkFtp3yRlw,1844
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  scout/server/blueprints/genes/__init__.py,sha256=LPHrbmfVhZpLGGdExFbJp_Du1NKCsVOO_eaevpsNLC8,52
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  scout/server/blueprints/genes/controllers.py,sha256=LCuGPQymKxA7sES49z_j2_B3prKmNY-ME0VK892VoPs,3629
@@ -499,13 +498,14 @@ scout/server/blueprints/institutes/controllers.py,sha256=M4Dukwi9vpXyU7oTC3KvEUX
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  scout/server/blueprints/institutes/forms.py,sha256=c76D9mPQNmUc9PN43_2w3tHRXxHO9Drg1J8BkG-2v4g,5658
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  scout/server/blueprints/institutes/views.py,sha256=nzpslF6WeKJL_DClu2njJRXupBzoPD6C2j6GI8NWQ-E,8614
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+ scout/server/blueprints/institutes/static/select2_darktheme.css,sha256=Nq_va597W_e5y-52B4ClwSJzACq0WFbPU8SIp3DtKIo,1818
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  scout/server/blueprints/institutes/static/variants_list_scripts.js,sha256=gO_ZuJC2jj7Y9x6CEVEVhN1oIE4bIWrTY0_zVcsbRbY,236
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  scout/server/blueprints/institutes/templates/overview/cases.html,sha256=cORmM5rOv-hAqg3FmS1SgvW_tipNGOdPZeHk8j2rKrU,14159
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  scout/server/blueprints/institutes/templates/overview/causatives.html,sha256=KHCPIshkenOjIVWkG9usfLqkORChonGdOiIRw0h1oj0,1593
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  scout/server/blueprints/institutes/templates/overview/filters.html,sha256=Dzu5YicmdjW_zGqbCUrb8TMbSUuRaG47itTMwwX7Bm8,3102
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  scout/server/blueprints/institutes/templates/overview/gene_variants.html,sha256=Gux54z0-Lov8UwnNabfoWPZ4eRmU5jQ7zIhZRB2o3Mg,7756
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- scout/server/blueprints/institutes/templates/overview/institute_settings.html,sha256=4dgSKwhD3ajWcZ-GHrUWjp1lcBPGxvgxpSpU4Sp4Zyc,4914
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+ scout/server/blueprints/institutes/templates/overview/institute_settings.html,sha256=EqOek5bso0wKqeEnUPW1z2mIpwRl8kuFyDKHJZ0FJx4,5014
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  scout/server/blueprints/institutes/templates/overview/institute_sidebar.html,sha256=48_uoDADPRv-V2Xa8OMmMUnFYprsz17L5jLPeEVBWC8,4309
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  scout/server/blueprints/institutes/templates/overview/timeline.html,sha256=upTv7v4sUwxGfJDSyk8F5zPb61dedG66zgfvh_SMR4M,2289
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  scout/server/blueprints/institutes/templates/overview/users.html,sha256=6dkbDBNLw2b97M2Pd8JImpPoT3FLTcl84oBN3inLJRg,1134
@@ -532,11 +532,11 @@ scout/server/blueprints/managed_variants/templates/managed_variants/managed_vari
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  scout/server/blueprints/panels/__init__.py,sha256=usxBF0O7zNX1d9jt-8DRoFZwcfHHS96Gv87LDr1AgG4,53
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  scout/server/blueprints/panels/controllers.py,sha256=jpWSxSdu_U6mxBjxQlnIEBNv0nsJ0aHUecWA3gFhcJw,12898
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  scout/server/blueprints/panels/forms.py,sha256=rkuYgrbGYZ2luVgnZyclX92ijVjvQU7S6RGSUi0YFEA,695
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- scout/server/blueprints/panels/views.py,sha256=h24fDcdC4dvf9ZZxudrQR1ewnxdmDhelbEp8HnHzEdQ,15636
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+ scout/server/blueprints/panels/views.py,sha256=7SsusNQKNm98IFU8lsYsVeuzkTF5Kgqyb_RxF1sYFrI,15765
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  scout/server/blueprints/panels/templates/panels/gene-edit.html,sha256=ZuXxdvjioxHlC0mz54t4q2KBFvP2qXb5VpNIcMVayVM,3649
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- scout/server/blueprints/panels/templates/panels/panel.html,sha256=Z6OXFEbBgxDdkw5sImet6tAlWQsb9TnsstqzoayE3P8,14603
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- scout/server/blueprints/panels/templates/panels/panel_pdf_case_hits.html,sha256=FDq_8cem8pLg56XBGoU18HsDiKILdw2W-2xbv_kC_yc,3412
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- scout/server/blueprints/panels/templates/panels/panel_pdf_simple.html,sha256=EF8jyWiumv6-wBZYpIMCdyqU6edl_lsQBVGbio2Ax-o,2587
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+ scout/server/blueprints/panels/templates/panels/panel.html,sha256=qJrtU_wCF2FAsMkZYpuqjuQbvVOUqYsOZVmT3iXs_XU,15515
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+ scout/server/blueprints/panels/templates/panels/panel_pdf_case_hits.html,sha256=uzfZJiMNQiTa_6u4uMuIbK3VXIs-8Rw-MjKujFttZG8,3438
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+ scout/server/blueprints/panels/templates/panels/panel_pdf_simple.html,sha256=6fcuiYcm_Gjh0klgQ9AfbpYUJAQrXm0YPAjFwrtmLHs,2677
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  scout/server/blueprints/phenomodels/__init__.py,sha256=Kb1fqfCn-QsH5mz6hiuQ2DiC7icTClD4HLey6QN4GD4,34
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  scout/server/blueprints/phenomodels/controllers.py,sha256=g5-BxlaHN7JBuQHEcOtQMUDEO9U9iy9HICaIaIEn3vk,11019
@@ -586,7 +586,7 @@ scout/server/blueprints/public/static/ideograms/chromosome-X.png,sha256=Dj7npcW_
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  scout/server/blueprints/public/static/ideograms/chromosome-Y.png,sha256=KlOsBLZYFVHRvXvTioT-XE57zSWoYeIwIEXo_rzLBR0,1524
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  scout/server/blueprints/variant/__init__.py,sha256=SlD8-Aoj9Jq9aVTJjtFfsu-0sUVfkzpiEXcH8z9q6dI,54
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- scout/server/blueprints/variant/controllers.py,sha256=-kAF1_nv7Cwkx2sRuLh8hZJfTeCZA7DDEsr5uliuqxQ,25247
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+ scout/server/blueprints/variant/controllers.py,sha256=pX2CD58w6YHeeJ5YowALUwuLx3AlhfXiBMHIkn6diNE,25457
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  scout/server/blueprints/variant/verification_controllers.py,sha256=eKzP222e7xuFOaQaI9MLOrD9RWtI8uGB1cJYbcXLzF0,10972
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  scout/server/blueprints/variant/views.py,sha256=YQ6BXshrJDbPkPXPIwt_JtEqrbgfpzZPXqR4dsSRBt4,14610
@@ -602,17 +602,17 @@ scout/server/blueprints/variant/templates/variant/sv-variant.html,sha256=Rn6lAte
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  scout/server/blueprints/variant/templates/variant/tx_overview.html,sha256=turyCoOCCd_N80FakxXfIl7q_WViysz1fwx3j312_Lg,6737
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  scout/server/blueprints/variant/templates/variant/utils.html,sha256=Ieb7bhonAzg3PvmWMZt8rqJrxZXbUrzRVVklt8GqXw4,21416
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  scout/server/blueprints/variant/templates/variant/variant.html,sha256=hr_K5Z1daHtUPRGhCLSGO1Ltp4ZPNR8DJ5Wd4TA_y6s,18688
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- scout/server/blueprints/variant/templates/variant/variant_details.html,sha256=CGp-xUlnvQYfZ7qFkaD41ukpJ43wOrrpKCJdFQWoqEM,16635
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+ scout/server/blueprints/variant/templates/variant/variant_details.html,sha256=v2XxN1IAVoZikix7s1LVSisLBEa-973HBHHKgoXsdWI,17576
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  scout/server/blueprints/variants/__init__.py,sha256=W1KCz9kEbVlNO0o3NvLitYLQoP_3JSJ5KSjhpcjlUBQ,55
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- scout/server/blueprints/variants/controllers.py,sha256=vdygW-AlsT4SoYKAk5cDESM_VcpHUiozW6b81DWR60A,69618
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+ scout/server/blueprints/variants/controllers.py,sha256=9uBLSoBlFHPX9RjaUQy9pPouzd5m94tqm3IOO2ilGOA,72349
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  scout/server/blueprints/variants/forms.py,sha256=6EnYykhPXWqKRO1qISgs7HIJjfxJjrgxtKn1e2e8Voc,8359
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  scout/server/blueprints/variants/utils.py,sha256=WfNO1ZmZLajO3dx_fQpUr-TsO7ciHa-1Bsf2vXT6ce4,751
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- scout/server/blueprints/variants/views.py,sha256=1RMMyG_bDOhQOKbW5fY_T91YCvfMd4lnEKgZ8hvdRyk,27763
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+ scout/server/blueprints/variants/views.py,sha256=h2z5x7_eA0niXlhOAkYI4eduz3je5XGw_EUnbMenuNA,28136
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  scout/server/blueprints/variants/static/form_scripts.js,sha256=o3GCboaesA9Sm1HgejS_yQwt0I-NTkvcl56jiBdLqZs,8319
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  scout/server/blueprints/variants/templates/variants/cancer-sv-variants.html,sha256=Y7XQZjjrU_cJGU8EEGEF3QzTVvDfEVudFdygYExVxwI,7429
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  scout/server/blueprints/variants/templates/variants/cancer-variants.html,sha256=bX9FLoufo72PBDoWp95DVLltxUrbLeuFmZQObP1oAlw,10132
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- scout/server/blueprints/variants/templates/variants/components.html,sha256=JzkU_6M1rXlLHuZa5ywAvadVIbD5H3Vnu8iZggborbc,13833
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- scout/server/blueprints/variants/templates/variants/fusion-variants.html,sha256=L7puPv7O4SeSO7hQBlq12GJgWpaq2LqVRl5UJT7zM84,7131
614
+ scout/server/blueprints/variants/templates/variants/components.html,sha256=gr-C36Ah85z8FGEPNewyGvRq8rC6FmdtmMJ8gtLGHFA,13880
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+ scout/server/blueprints/variants/templates/variants/fusion-variants.html,sha256=UOOlYSx7A1HR1d_13WMPvYgq6cabXYoF4wDQQb9BMBU,7171
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  scout/server/blueprints/variants/templates/variants/indicators.html,sha256=BX6Wg8OpsALCGGozR1eXT57D0Ixrf-OFXVg6G20Wjr0,4400
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  scout/server/blueprints/variants/templates/variants/mei-variants.html,sha256=0-wYjaiUByDduWMgmRS4AMg3IppPNtjZL1vvAdFuIPI,5994
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  scout/server/blueprints/variants/templates/variants/str-variants.html,sha256=wW50J0XzfCGv6mGulA_aq2XAab8vBURESiBe_OLVP1M,9912
@@ -637,8 +637,8 @@ scout/server/static/humans.txt,sha256=UdqAR07_5LAWWfgH2Ty4RR8BhoHS1WXpx9euKtXqqh
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  scout/server/static/robots.txt,sha256=fFX0beQN4x3mzR3evnZjrOUYOTNkezYAwqMowTUpmxM,106
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  scout/server/templates/bootstrap_global.html,sha256=6e09Qyn3pc5zbE82Gacyye9qL5cMbrfOebMSjU9rqqA,2894
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  scout/server/templates/layout.html,sha256=-uhRxFA89L0gocv8sPLcODUHmWLNuV6xsjB34Zjq-8o,4635
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- scout/server/templates/report_base.html,sha256=WiyEd7QeQOTogC9jzfZm7VwymbNTvui_cG9tvgdbI1M,942
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- scout/server/templates/utils.html,sha256=O8gTTQJGK_3yDyYrN04xIwO4dlM3QMdc8rchYubj58E,10648
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+ scout/server/templates/report_base.html,sha256=PZOqFZRLtbe4PZ7lkVc9LP1O-yh7v3_EzOohRE9Ix4U,1252
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+ scout/server/templates/utils.html,sha256=9o3zXyAaIcZFmmg1ltYyNk7ow7CYlnf4NbHfeLnp5fg,12941
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  scout/server/translations/sv/LC_MESSAGES/messages.mo,sha256=eI53pCtlYj1MXduDicMZRxBhgOV_TlmMUpH7IhncgDY,4452
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  scout/server/translations/sv/LC_MESSAGES/messages.po,sha256=Wp7Mx4LoiFNtzsV1tpAoWjMxYnq8SpfpU9a4XWJ7L6g,4531
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  scout/update/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
@@ -659,9 +659,9 @@ scout/utils/hgvs.py,sha256=P5i3fIK8WZZlUnjZ8XpMDUG5KDXRCDSOs55DfK5acsc,898
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  scout/utils/link.py,sha256=RuCUwnOtGDf9ACaC64_1FqWyWDaBv7dqNEGjmCq59kk,9001
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  scout/utils/md5.py,sha256=KkgdxOf7xbF9AF40ZjQKCgWaxFWJ9tp9RKjd8SU6IoA,649
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  scout/utils/scout_requests.py,sha256=owL_XvsrQJG4e0EUuUiY6y_hqKKep2Qljg1nMukzp8Y,12855
662
- scout_browser-4.79.1.dist-info/LICENSE,sha256=TM1Y9Cqbwk55JVfxD-_bpGLtZQAeN9RovQlqHK6eOTY,1485
663
- scout_browser-4.79.1.dist-info/METADATA,sha256=hu9jWWy6J9seVjJJ9NY8-vbkIMExraBpK1um-efQutM,14198
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- scout_browser-4.79.1.dist-info/WHEEL,sha256=oiQVh_5PnQM0E3gPdiz09WCNmwiHDMaGer_elqB3coM,92
665
- scout_browser-4.79.1.dist-info/entry_points.txt,sha256=E6vGg1OwvvKYIsXdHxmlIj7RmcTF0K77Q_PU8laImGg,46
666
- scout_browser-4.79.1.dist-info/top_level.txt,sha256=qM75h71bztMaLYsxn1up4c_n2rjc_ZnyaW6Q0K5uOXc,6
667
- scout_browser-4.79.1.dist-info/RECORD,,
662
+ scout_browser-4.81.dist-info/LICENSE,sha256=TM1Y9Cqbwk55JVfxD-_bpGLtZQAeN9RovQlqHK6eOTY,1485
663
+ scout_browser-4.81.dist-info/METADATA,sha256=FHj21oEF5pMZ602x8sN_dsOZaY1-4j9d1w7Zex1oklY,14196
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+ scout_browser-4.81.dist-info/WHEEL,sha256=oiQVh_5PnQM0E3gPdiz09WCNmwiHDMaGer_elqB3coM,92
665
+ scout_browser-4.81.dist-info/entry_points.txt,sha256=E6vGg1OwvvKYIsXdHxmlIj7RmcTF0K77Q_PU8laImGg,46
666
+ scout_browser-4.81.dist-info/top_level.txt,sha256=qM75h71bztMaLYsxn1up4c_n2rjc_ZnyaW6Q0K5uOXc,6
667
+ scout_browser-4.81.dist-info/RECORD,,
@@ -1,48 +0,0 @@
1
- {% from "cases/utils.html" import pretty_variant %}
2
- {% from "clinvar/clinvar_howto.html" import clinvar_howto_modal %}
3
-
4
- {% macro clinvar_vars(institute, case, suspects) %}
5
- {{ clinvar_howto_modal() }}
6
-
7
- <div class="card panel-default">
8
- <div>
9
- <div class="d-flex justify-content-between">
10
- <h6><span class="fa fa-map-pin ms-3 mt-2"></span>&nbsp;Variants submitted to ClinVar ({{ case.clinvar_variants.items()|length }}) <a data-bs-target="#howto" href="#" data-bs-toggle="modal">?</a>
11
- </h6>
12
- </div>
13
- </div>
14
- <div class="card">
15
- {% if suspects %}
16
- <div style="max-height:300px; overflow-y: scroll;">
17
- <ul class="list-group">
18
- {% for variant in suspects %}
19
- {% if variant._id and variant.category != 'str' %}
20
- <li class="list-group-item">
21
- <div>
22
- <form id="clinvar_submit" action="{{ url_for('clinvar.clinvar_add_variant', institute_id=institute._id, case_name=case.display_name) }}" method="POST">
23
- {{pretty_variant(variant)}}
24
- {% if case.clinvar_variants and variant._id in case.clinvar_variants.keys() %}
25
- (included in submission)
26
- {% else %}
27
- <button type="submit" name="var_id" value="{{variant._id}}" class="btn btn-secondary btn-sm" style="float: right;">Add to submission</button>
28
- {% endif %}
29
- </form>
30
- </div>
31
- </li>
32
- {% endif %}
33
- {% endfor %}
34
- </ul>
35
- </div> <!-- End of scrollable style div -->
36
- {% endif %}
37
- {% if case.clinvar_variants %}
38
- <div class="d-flex justify-content-center">
39
- <div>
40
- <a href="{{url_for('clinvar.clinvar_submissions', institute_id=institute._id)}}" class="mb-3 mt-3 btn btn-secondary btn-sm text-white" target="_blank" rel="noopener noreferrer">ClinVar submissions</a>
41
- </div>
42
- </div>
43
- {% endif %}
44
- </div>
45
- </div>
46
- {% endmacro %}
47
-
48
-