scout-browser 4.103.1__py3-none-any.whl → 4.103.3__py3-none-any.whl

scout/server/app.py

@@ -311,20 +311,31 @@ def register_filters(app):
 
     @app.template_filter()
     def format_variant_canonical_transcripts(variant: dict) -> List[str]:
-        """Formats canonical transcripts for all genes in a variant."""
-
         lines = set()
         genes = variant.get("genes") or []
 
         for gene in genes:
+            gene_symbol = gene.get("hgnc_symbol", "")
+            hgvs = gene.get("hgvs_identifier")
             transcripts = gene.get("transcripts") or []
+
+            canonical_tx = None
+            primary_tx = None
+            tx_id = None
+
+            protein = None
+
             for tx in transcripts:
+                tx_id = tx.get("transcript_id")
                 if not tx.get("is_canonical"):
+                    if tx.get("is_primary"):
+                        primary_tx = tx_id
                     continue
-                canonical_tx = tx.get("transcript_id")
+                canonical_tx = tx_id
                 protein = tx.get("protein_sequence_name")
-            line_components = [f"{canonical_tx} ({gene.get('hgnc_symbol', '')})"]
-            hgvs = gene.get("hgvs_identifier")
+                break
+
+            line_components = [f"{canonical_tx or primary_tx or tx_id} ({gene_symbol})"]
             if hgvs:
                 line_components.append(hgvs)
             if protein:

scout/server/blueprints/alignviewers/controllers.py

@@ -278,13 +278,14 @@ def get_tracks(name_list: list, file_list: list) -> List[Dict]:
     for name, track in zip(name_list, file_list):
         if track == "missing":
             continue
-        track_config = {"name": name, "url": track, "min": 0.0, "max": 30.0}
+        track_config = {"name": name, "url": track, "min": 0.0}
         index = find_index(track)
         if index:
             track_config["indexURL"] = index
         file_format_ending = track.split(".")[-1]
         if file_format_ending in ["bam", "cram"]:
             track_config["format"] = file_format_ending
+            track_config["autoscaleGroup"] = "alignments"
         track_list.append(track_config)
     return track_list
 

scout/server/blueprints/alignviewers/templates/alignviewers/igv_viewer.html

@@ -97,7 +97,7 @@
                         {# indexURL: '{{ url_for("alignviewers.remote_static", file=wtrack.url)  }}', #}
                         color: "rgb(60, 37, 17)",
                         min: '{{ wtrack.min }}',
-                        max: '{{ wtrack.max }}',
+                        autoscaleGroup: '{{ wtrack.autoscaleGroup }}',
                         sourceType: 'file'
                       },
                       {% endfor %}
@@ -155,7 +155,7 @@
                         groupBy: "tag:HP",
                         indexURL: '{{ url_for("alignviewers.remote_static", file=ptrack.indexURL)  }}',
                         min: '{{ ptrack.min }}',
-                        max: '{{ ptrack.max }}',
+                        autoscaleGroup: '{{ ptrack.autoscaleGroup }}',
                         sourceType: 'file'
                       },
                       {% endfor %}
@@ -170,7 +170,7 @@
                         showCoverage: false,
                         indexURL: '{{ url_for("alignviewers.remote_static", file=atrack.indexURL)  }}',
                         min: '{{ atrack.min }}',
-                        max: '{{ atrack.max }}',
+                        autoscaleGroup: '{{ atrack.autoscaleGroup }}',
                         sourceType: 'file'
                       },
                       {% endfor %}

scout/server/blueprints/alignviewers/templates/alignviewers/utils.html

@@ -1,5 +1,5 @@
 {% macro igv_script() %}
   <link rel="shortcut icon" href="//igv.org/web/img/favicon.ico">
   <!-- IGV JS-->
-  <script src="https://cdn.jsdelivr.net/npm/igv@3.3.0/dist/igv.min.js" integrity="sha512-U3drIflKJksG0+kiVuqYrQaI9SsloPhKfISeZr8bzVpO/oRFz7hE1vdJirvDyYIfv51CSucKJgcLAdupqitBcQ==" crossorigin="anonymous"></script>
+  <script src="https://cdn.jsdelivr.net/npm/igv@3.4.1/dist/igv.min.js" integrity="sha512-XV1P5+zb49ZOAEHa98+DjASX4NxQdQxEb63eGylVtIr278vrOqmSGHpcswDRQQuCRZ9YtLnxM7xs8kyRqqN+pA==" crossorigin="anonymous"></script>
 {% endmacro %}

scout/server/blueprints/institutes/views.py

@@ -145,7 +145,9 @@ def gene_variants(institute_id):
 
     institute_choices = [
         (inst["_id"], f"{inst['display_name']} ({inst['_id']})")
-        for inst in user_institutes(store, current_user)
+        for inst in sorted(
+            user_institutes(store, current_user), key=lambda i: i["display_name"].lower()
+        )
     ]
     form = GeneVariantFiltersForm()
     form.institute.choices = institute_choices

scout/server/blueprints/omics_variants/templates/omics_variants/outliers.html

@@ -4,7 +4,7 @@
 
 {% from "variants/components.html" import external_scripts, external_stylesheets, gene_cell %}
 {% from "variant/buttons.html" import splice_junctions_button %}
-{% from "variants/utils.html" import filter_script_main, pagination_footer, pagination_hidden_div, stash_filter_buttons, update_stash_filter_button_status%}
+{% from "variants/utils.html" import filter_script_main, filters_form_header, pagination_footer, pagination_hidden_div, stash_filter_buttons, update_stash_filter_button_status%}
 {% from "variant/components.html" import variant_scripts %}
 
 {% block title %}
@@ -43,9 +43,7 @@
 
       {{ pagination_hidden_div(page) }}
       <div class="card panel-default" id="accordion">
-        <div class="card-header">
-          <strong><a data-bs-toggle="collapse" data-parent="#accordion" href="#collapseFilters">Filters</a></strong>
-        </div>
+        {{ filters_form_header(result_size, total_variants) }}
         <!--Expand filters form if filters were used in a previous POST request-->
         <div class="card-body panel-collapse collapse {{ 'show' if expand_search is sameas true }}" id="collapseFilters">
             {{ outlier_filters(form, institute, case) }}
@@ -271,10 +269,7 @@
       </div>
     </div>
     <div class="col-4 d-flex justify-content-center">
-      Filter returns {{result_size}} / {{ total_variants }} variants.
-    </div>
-    <div class="col-4 d-flex justify-content-end">
-      <div class="d-flex justify-content-end">Showing {%if more_variants %}page {{page}}{%else%}last page{% endif %} with {{nvars}} variants.</div>
+      Showing {%if more_variants %}page {{page}}{%else%}last page{% endif %}
     </div>
   </div>
 </div>

scout/server/blueprints/panels/controllers.py

@@ -301,7 +301,7 @@ def downloaded_panel_name(panel_obj, format) -> str:
     Returns:
         a string describing the panel
     """
-    sanitized_panel_id = re.sub(r"[^a-zA-Z_\-]+", "", panel_obj["panel_name"])
+    sanitized_panel_id = re.sub(r"[^a-zA-Z0-9_\-]+", "_", panel_obj["panel_name"]).strip("_")
 
     return "_".join(
         [

scout/server/blueprints/variants/controllers.py

@@ -1023,7 +1023,7 @@ def download_str_variants(case_obj, variant_objs):
         variant_line.append(str(variant.get("variant_rank", "")))  # index
         variant_line.append(variant.get("str_repid", variant.get("str_trid", "")))  # Repeat locus
         variant_line.append(
-            variant.get("str_display_ru", variant.get("str_ru", ""))
+            variant.get("str_display_ru", variant.get("str_ru", variant.get("str_motifs", "")))
         )  # Reference repeat unit
         variant_line.append(str(get_str_mc(variant) or "."))  # Estimated size
         variant_line.append(str(variant.get("str_ref", "")))  # Reference size

scout/server/blueprints/variants/templates/variants/cancer-sv-variants.html

@@ -1,5 +1,5 @@
 {% extends "layout.html" %}
-{% from "variants/utils.html" import cancer_sv_filters,cell_rank, pagination_footer, pagination_hidden_div, filter_form_footer, filter_script_main, update_stash_filter_button_status, dismiss_variants_block, callers_cell %}
+{% from "variants/utils.html" import cancer_sv_filters, filters_form_header, cell_rank, pagination_footer, pagination_hidden_div, filter_form_footer, filter_script_main, update_stash_filter_button_status, dismiss_variants_block, callers_cell %}
 {% from "variants/components.html" import allele_cell, external_scripts, external_stylesheets, frequency_cell_general, observed_cell_general, variant_gene_symbols_cell, variant_funct_anno_cell %}
 
 {% block title %}
@@ -42,9 +42,7 @@
   <div class="container-float">
     {{ pagination_hidden_div(page) }}
     <div class="card panel-default" id="accordion">
-      <div class="card-header">
-        <strong><a data-bs-toggle="collapse" data-bs-parent="#accordion" href="#collapseFilters">Somatic Structural Variant Filters</a></strong>
-      </div>
+      {{ filters_form_header(result_size, total_variants) }}
       <!--Expand filters form if filters were used in a previous POST request-->
       <div id="collapseFilters" class="card-body panel-collapse collapse {{ 'show' if expand_search is sameas true }}">
         {{ cancer_sv_filters(form, institute, case) }}

scout/server/blueprints/variants/templates/variants/cancer-variants.html

@@ -1,7 +1,7 @@
 {% extends "layout.html" %}
 
 {% from "variants/components.html" import allele_cell, external_scripts, external_stylesheets, gene_cell, frequency_cell_general, observed_cell_general, variant_funct_anno_cell %}
-{% from "variants/utils.html" import cancer_filters, cell_rank, pagination_footer, pagination_hidden_div, dismiss_variants_block, filter_form_footer, filter_script_main, update_stash_filter_button_status, callers_cell, variant_rank_score %}
+{% from "variants/utils.html" import cancer_filters, filters_form_header, cell_rank, pagination_footer, pagination_hidden_div, dismiss_variants_block, filter_form_footer, filter_script_main, update_stash_filter_button_status, callers_cell, variant_rank_score %}
 {% from "variants/indicators.html" import pin_indicator, causative_badge, clinical_assessments_badge, comments_badge, dismissals_badge, evaluations_badge, group_assessments_badge, matching_manual_rank, other_tiered_variants, research_assessments_badge %}
 
 {% block title %}
@@ -38,9 +38,7 @@
   <div class="container-float">
     {{ pagination_hidden_div(page) }}
     <div class="card panel-default" id="accordion">
-      <div class="card-header">
-        <strong><a data-bs-toggle="collapse" data-parent="#accordion" href="#collapseFilters">Filters</a></strong>
-      </div>
+      {{ filters_form_header(result_size, total_variants) }}
       <!--Expand filters form if filters were used in a previous POST request or the previous POST request form was not validated-->
       <div class="card-body panel-collapse collapse {{ 'show' if expand_search is sameas true }}" id="collapseFilters" >
         {{ cancer_filters(form, institute, case) }}

scout/server/blueprints/variants/templates/variants/mei-variants.html

@@ -1,5 +1,5 @@
 {% extends "layout.html" %}
-{% from "variants/utils.html" import mei_filters, cell_rank, pagination_footer, pagination_hidden_div, dismiss_variants_block, filter_form_footer, filter_script_main, update_stash_filter_button_status %}
+{% from "variants/utils.html" import mei_filters, filters_form_header, cell_rank, pagination_footer, pagination_hidden_div, dismiss_variants_block, filter_form_footer, filter_script_main, update_stash_filter_button_status %}
 {% from "variants/components.html" import external_scripts, external_stylesheets, frequency_cell_general, overlapping_cell, variant_gene_symbols_cell, variant_funct_anno_cell %}
 
 {% block title %}
@@ -42,9 +42,7 @@ onsubmit="return validateForm()">
   <div class="container-float">
     {{ pagination_hidden_div(page) }}
       <div class="card panel-default" id="accordion">
-        <div class="card-header">
-          <strong><a data-bs-toggle="collapse" data-parent="#accordion" href="#collapseFilters">MeiFilters</a></strong>
-        </div>
+        {{ filters_form_header(result_size, total_variants) }}
         <!--Expand filters form if filters were used in a previous POST request-->
         <div id="collapseFilters" class="card-body panel-collapse collapse {{ 'show' if expand_search is sameas true }}">
           <div class="card-body">{{ mei_filters(form, institute, case) }}</div>

scout/server/blueprints/variants/templates/variants/str-variants.html

@@ -3,7 +3,7 @@
 {% from "variant/buttons.html" import reviewer_button%}
 {% from "variant/gene_disease_relations.html" import inheritance_badge %}
 {% from "variants/components.html" import external_scripts, external_stylesheets, frequency_cell_general %}
-{% from "variants/utils.html" import callers_cell, cell_rank, dismiss_variants_block, filter_form_footer, update_stash_filter_button_status, pagination_footer, pagination_hidden_div, str_filters, filter_script_main %}
+{% from "variants/utils.html" import callers_cell, cell_rank, dismiss_variants_block, filter_form_footer, update_stash_filter_button_status, pagination_footer, pagination_hidden_div, str_filters, filters_form_header, filter_script_main %}
 
 
 {% block title %}
@@ -45,9 +45,7 @@
      enctype="multipart/form-data" onsubmit="return validateForm()">
      {{ pagination_hidden_div(page) }}
     <div class="card panel-default" id="accordion">
-      <div class="card-header">
-        <strong><a data-bs-toggle="collapse" data-parent="#accordion" href="#collapseFilters">Filters</a></strong>
-      </div>
+      {{ filters_form_header(result_size, total_variants) }}
       <!--Expand filters form if filters were used in a previous POST request-->
       <div class="card-body panel-collapse collapse {{ 'show' if expand_search is sameas true }}" id="collapseFilters">
           {{ str_filters(form, institute, case) }}
@@ -243,8 +241,12 @@
       {% endfor %}
     {%endif%}
   </div>"
-  title="">{% if variant.str_repid %} {{ variant.str_repid }} {% elif variant.str_trid %} {{ variant.str_trid  }} {% else %}
-  {% for gene in variant.genes %} {{ gene.symbol }} {% endfor %} {% endif %}
+  title="">{% if variant.str_repid %} {{ variant.str_repid }}
+  {% elif variant.genes %}
+    {% for gene in variant.genes %} {{ gene.symbol or gene.hgnc_symbol }} {% endfor %}
+  {% else %}
+    {{ variant.str_trid }}
+  {% endif %}
   </a>
   {% for gene in variant.genes %}
       {% if variant.str_disease %}

scout/server/blueprints/variants/templates/variants/sv-variants.html

@@ -1,5 +1,5 @@
 {% extends "layout.html" %}
-{% from "variants/utils.html" import sv_filters, cell_rank, pagination_footer, pagination_hidden_div, dismiss_variants_block, filter_form_footer, filter_script_main, update_stash_filter_button_status, callers_cell, variant_rank_score %}
+{% from "variants/utils.html" import sv_filters, filters_form_header, cell_rank, pagination_footer, pagination_hidden_div, dismiss_variants_block, filter_form_footer, filter_script_main, update_stash_filter_button_status, callers_cell, variant_rank_score %}
 {% from "variants/components.html" import external_scripts, external_stylesheets, frequency_cell_general, observed_cell_general, overlapping_cell, variant_gene_symbols_cell, variant_funct_anno_cell %}
 
 {% block title %}
@@ -42,9 +42,7 @@ onsubmit="return validateForm()">
   <div class="container-float">
     {{ pagination_hidden_div(page) }}
     <div class="card panel-default" id="accordion">
-      <div class="card-header">
-        <strong><a data-bs-toggle="collapse" data-parent="#accordion" href="#collapseFilters">SvFilters</a></strong>
-      </div>
+      {{ filters_form_header(result_size, total_variants) }}
       <!--Expand filters form if filters were used in a previous POST request-->
       <div id="collapseFilters" class="card-body panel-collapse collapse {{ 'show' if expand_search is sameas true }}">
         {{ sv_filters(form, institute, case) }}

scout/server/blueprints/variants/templates/variants/utils.html

@@ -135,12 +135,9 @@
         {% endif %}
       </div>
     </div>
-    <div class="col-4 d-flex justify-content-center">
-      Filter returns {{result_size}} / {{ total_variants }} variants.
-    </div>
     <div class="col-4 d-flex flex-column justify-content-end">
-      <div class="d-flex justify-content-end">Showing {%if more_variants %}page {{page}}{%else%}last page{% endif %} with {{nvars}} variants.</div>
-      <div class="d-flex justify-content-end">{{ toggle_dismiss_variants_block() }}</div>
+      <div class="d-flex justify-content-center">Showing {%if more_variants %}page {{page}}{%else%}last page{% endif %}</div>
+      <div class="d-flex justify-content-center">{{ toggle_dismiss_variants_block() }}</div>
     </div>
   </div>
 </div>
@@ -303,6 +300,33 @@
 </div>
 {% endmacro %}
 
+{% macro filters_form_header(result_size, total_variants) %}
+
+<style>
+  .chevron-icon {
+    transition: transform 0.3s ease;
+  }
+  button[aria-expanded="true"] .chevron-icon {
+    transform: rotate(90deg);
+  }
+</style>
+
+<div class="card-header d-flex justify-content-between align-items-center">
+  <button class="d-flex align-items-center btn btn-link p-0 text-decoration-none"
+          type="button"
+          data-bs-toggle="collapse"
+          data-bs-target="#collapseFilters"
+          aria-expanded="false"
+          aria-controls="collapseFilters">
+    <strong class="me-2">Filters</strong>
+    <i class="fa fa-chevron-right chevron-icon"></i>
+  </button>
+  <div class="text-muted">
+    Filter returns {{ result_size }} / {{ total_variants }} variants.
+  </div>
+</div>
+{% endmacro %}
+
 {% macro snv_filters(form, institute, case, filters)%}
 <input type="hidden" name="variant_type" value="{{ form.variant_type.data }}">
   {{ variants_common_filters(form, "snv") }}

scout/server/blueprints/variants/templates/variants/variants.html

@@ -1,5 +1,5 @@
 {% extends "layout.html" %}
-{% from "variants/utils.html" import snv_filters, cell_rank, pagination_footer, pagination_hidden_div, dismiss_variants_block, filter_form_footer, filter_script_main, update_stash_filter_button_status, mark_heteroplasmic_mt, variant_rank_score %}
+{% from "variants/utils.html" import snv_filters, filters_form_header, cell_rank, pagination_footer, pagination_hidden_div, dismiss_variants_block, filter_form_footer, filter_script_main, update_stash_filter_button_status, mark_heteroplasmic_mt, variant_rank_score %}
 {% from "variants/components.html" import external_scripts, external_stylesheets, frequency_cell_general, gene_cell, observed_cell_general, overlapping_cell  %}
 
 {% block title %}
@@ -41,9 +41,7 @@
     <div class="container-float">
      {{ pagination_hidden_div(page) }}
      <div class="card panel-default" id="accordion">
-       <div class="card-header">
-         <strong><a data-bs-toggle="collapse" data-parent="#accordion" href="#collapseFilters">Filters</a></strong>
-       </div>
+       {{ filters_form_header(result_size, total_variants) }}
        <!--Expand filters form if filters were used in a previous POST request-->
        <div class="card-body panel-collapse collapse {{ 'show' if expand_search is sameas true }}" id="collapseFilters">
          {{ snv_filters(form, institute, case) }}

scout/server/blueprints/variants/views.py

@@ -230,6 +230,7 @@ def str_variants(institute_id, case_name):
         case_obj["_id"], category=category, query=query, build=genome_build
     ).sort(
         [
+            ("genes.hgnc_symbol", pymongo.ASCENDING),
             ("str_repid", pymongo.ASCENDING),
             ("str_trid", pymongo.ASCENDING),
             ("chromosome", pymongo.ASCENDING),

{scout_browser-4.103.1.dist-info → scout_browser-4.103.3.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: scout-browser
-Version: 4.103.1
+Version: 4.103.3
 Summary: Clinical DNA variant visualizer and browser
 Project-URL: Repository, https://github.com/Clinical-Genomics/scout
 Project-URL: Changelog, https://github.com/Clinical-Genomics/scout/blob/main/CHANGELOG.md

{scout_browser-4.103.1.dist-info → scout_browser-4.103.3.dist-info}/RECORD

@@ -449,19 +449,19 @@ scout/resources/cytoBand_hg19.txt.gz,sha256=pheUD5b9NlVuvwwnbKwDc2FG80Yg70gvPxVX
 scout/resources/cytoBand_hg38.txt.gz,sha256=sqSVmvPlktQ-0hTiTapJM-5UgyV6xDoYZuTF0kPuETs,6105
 scout/resources/custom_igv_tracks/mane.bb,sha256=flEexDxHmbX7IwwrMM0P5DWOxcSCjmHxGNlyg_WqElQ,3519360
 scout/server/__init__.py,sha256=iwhKnzeBJLKxpRVjvzwiRE63_zNpIBfaKLITauVph-0,24
-scout/server/app.py,sha256=NB3WXI2Xa8Wdfnonkoxb0mWeEV9gYOJhqvYc_h4ajTw,14633
+scout/server/app.py,sha256=7iyp2gFhCRPr1zdRRYD-z3TanSjvbnEkI_YQiTSKxD8,14879
 scout/server/auto.py,sha256=8B6GwfOaUChkTLuLgYQDFMWlxGuHkEegF1argH2G2Ik,401
 scout/server/config.py,sha256=JcT9rUDcAdm9oSk7Wwbu-Aut96-xvBQnMeQTt_-6rXs,6401
 scout/server/links.py,sha256=aFCvrtXrc1gnhNhnifapVdUZOZKEpBD2zSxWXdvQLEk,28154
 scout/server/utils.py,sha256=gNPPtbIXKenxprg1b240pkEbJZowfY4xjH9lctbpeEs,14584
 scout/server/blueprints/__init__.py,sha256=iwhKnzeBJLKxpRVjvzwiRE63_zNpIBfaKLITauVph-0,24
 scout/server/blueprints/alignviewers/__init__.py,sha256=XMVed2ekVUAvroqENDHSr2pwM8otqau8ZA-rbH1T2U8,59
-scout/server/blueprints/alignviewers/controllers.py,sha256=s8fvqOewsR9bSf-tbZFGe1ePvz5zfoMrVvEzZBe6Cmw,15268
+scout/server/blueprints/alignviewers/controllers.py,sha256=G2bG6jZGS5tSr2SX7lp2ndMzzYt34YEhmQpex-c9xqo,15313
 scout/server/blueprints/alignviewers/partial.py,sha256=9hpI00yhvZZCcPVUHlVDp488r1j7vYU5YDXYA6OkWQM,2005
 scout/server/blueprints/alignviewers/views.py,sha256=Qa9VOPbqh2MC-L_x1Yp6n8hfr6mIm9EPIUdN_0itJRU,5092
 scout/server/blueprints/alignviewers/templates/alignviewers/igv_sashimi_viewer.html,sha256=37ArJCraTajqWlCvyQYVfSvWCg94pRDIMvf2Y7Oe_j4,5545
-scout/server/blueprints/alignviewers/templates/alignviewers/igv_viewer.html,sha256=rm_qcJaySQ3-Ux8Qr5JXlzWGFPAnx24fqa-XMpdcCnI,10988
-scout/server/blueprints/alignviewers/templates/alignviewers/utils.html,sha256=jaf4fba_RHVRymWxP32wCkR0GSZKD7PS8hYjqO8GVFI,336
+scout/server/blueprints/alignviewers/templates/alignviewers/igv_viewer.html,sha256=1ODZN22bYpxQpInKrQJQDKwoAji_aXSq6cpPzmVl8zU,11054
+scout/server/blueprints/alignviewers/templates/alignviewers/utils.html,sha256=W2i9IR0FyR-uduwkbI1pMmTnTDL2PtYczwcZpM03wMw,336
 scout/server/blueprints/api/__init__.py,sha256=HR6HjS7ot1K_8Lt5eQdNT154z_FCdHGSigy8r2LpNCI,26
 scout/server/blueprints/api/views.py,sha256=pbl78wfhrm1T8JmiJDYF3BbTbfFrlF-hQRbuv2GWI0s,3729
 scout/server/blueprints/cases/__init__.py,sha256=_c17kPFITFYcIVphF4V9bf0PZBer8bU3rtVWQnljKDU,52
@@ -519,7 +519,7 @@ scout/server/blueprints/genes/templates/genes/layout.html,sha256=cZMLe2cInq24z0s
 scout/server/blueprints/institutes/__init__.py,sha256=kGSyYrBC1QaEQBDdoMkMLfaowV7roaV5DowICi_0RSQ,65
 scout/server/blueprints/institutes/controllers.py,sha256=nYAkZ2SRBQsXYm-rfMkfyxBTWGSrpsgnvGdZ9Qqsqk0,37115
 scout/server/blueprints/institutes/forms.py,sha256=1xz_p51YIlWv-VhkCD3WS0K1z1S1oPYuWNaUNAQOchk,6858
-scout/server/blueprints/institutes/views.py,sha256=LG-uTAEUxbkHvvk0YDeDak2v366lAhmFjsyGYbZGI48,9354
+scout/server/blueprints/institutes/views.py,sha256=jBDLXw0vdAetaXqgZF3vd0EPCOpO11g0B3MTML7iTco,9425
 scout/server/blueprints/institutes/static/form_scripts.js,sha256=8Sn7omeXeeUbiXJPfT0Qb4CaBJ_KtZZWw7N2he7EDx0,747
 scout/server/blueprints/institutes/static/select2_darktheme.css,sha256=Nq_va597W_e5y-52B4ClwSJzACq0WFbPU8SIp3DtKIo,1818
 scout/server/blueprints/institutes/static/timeline_styles.css,sha256=Vq48ffIidpQmDQhAzfW47O9mGQZEWdlbMtOE8AK-ZEU,2122
@@ -559,9 +559,9 @@ scout/server/blueprints/mme/templates/mme/mme_submissions.html,sha256=VjahYVVpvy
 scout/server/blueprints/omics_variants/__init__.py,sha256=8UVXrChArhIvMxtgUcG-udvmlTn56q41iy-naOZw5us,37
 scout/server/blueprints/omics_variants/controllers.py,sha256=AnM70stvLniJIU3pFUX-InNjuT-7K0RpuAEYa7vM-jw,3912
 scout/server/blueprints/omics_variants/views.py,sha256=OnLP4-aOna3bKqa8LB8LwFMl4fLvGWo5STAQSXKI7nM,3714
-scout/server/blueprints/omics_variants/templates/omics_variants/outliers.html,sha256=tf46LDyQbxM8vshTs-MkZiMc0ClV-9LDUVRAtxNv5o4,14005
+scout/server/blueprints/omics_variants/templates/omics_variants/outliers.html,sha256=8pXe3yeX-Hd8CruVJ-X0DEMEVAiFaScFAw3Xz_kSM8M,13720
 scout/server/blueprints/panels/__init__.py,sha256=usxBF0O7zNX1d9jt-8DRoFZwcfHHS96Gv87LDr1AgG4,53
-scout/server/blueprints/panels/controllers.py,sha256=_LXiayDyGcyRQ3Hw13fD8zVYFQ1jIIXUMQ49WsimrZ8,12618
+scout/server/blueprints/panels/controllers.py,sha256=vqfm52AbdrIUq_2tGbsPJBocOkWaLNsFEA95gH_bLcI,12633
 scout/server/blueprints/panels/forms.py,sha256=DYlhYpnpv7ehf9JlY3HRFwy-TZ5QDHB0RIRaNTAW1jQ,696
 scout/server/blueprints/panels/views.py,sha256=DUnrUWIIxqe6bOpSN1G_6dSysPpIRGq3jJDSF4FfKkA,15844
 scout/server/blueprints/panels/templates/panels/gene-edit.html,sha256=KqdUdu93707upLxh31Bwxgd1w4kH-WHtVilSNmAqiRo,3627
@@ -636,21 +636,21 @@ scout/server/blueprints/variant/templates/variant/utils.html,sha256=Chek9j4v8R7s
 scout/server/blueprints/variant/templates/variant/variant.html,sha256=Pn4OSSgXjbsLXUbEKOqKKhyNsny4Ay-hoBFY1xDZ-dw,20741
 scout/server/blueprints/variant/templates/variant/variant_details.html,sha256=Bs59vFzJMav7D65aNLOQZ5985t0ZK49uyE1go_h5MdQ,21960
 scout/server/blueprints/variants/__init__.py,sha256=W1KCz9kEbVlNO0o3NvLitYLQoP_3JSJ5KSjhpcjlUBQ,55
-scout/server/blueprints/variants/controllers.py,sha256=NbRM4tVrWsLLOVH-Jun80K0ZwJ9MObCJtQjnBXE2hjM,74730
+scout/server/blueprints/variants/controllers.py,sha256=82pBTGMuqq1FCII9j0FlAsewQjD3XMZvYZ6IKJgvDd0,74757
 scout/server/blueprints/variants/forms.py,sha256=X4lw2UhSAAkaAMgpBK5yz8B8RvcirjjgjOyctN8g1xw,12599
 scout/server/blueprints/variants/utils.py,sha256=ifFBoyigx0A5KPE4iz9NSpyuUeF1bElrb4ohQLD2GlU,919
-scout/server/blueprints/variants/views.py,sha256=kBzO4uyI4EjaSEt5YKEkOOouwJQqTuRPatdkSFu5jkA,28472
+scout/server/blueprints/variants/views.py,sha256=7dEiz0g_ZhROmIouOaDa2tCUl0S6bAbzED6E9Ady4HA,28526
 scout/server/blueprints/variants/static/form_scripts.js,sha256=o3GCboaesA9Sm1HgejS_yQwt0I-NTkvcl56jiBdLqZs,8319
-scout/server/blueprints/variants/templates/variants/cancer-sv-variants.html,sha256=QlGmUEdUQ7gCq7tMMUFAlGqqC9jFB78Q0h6tSp3QUas,7271
-scout/server/blueprints/variants/templates/variants/cancer-variants.html,sha256=Czn1sp5hCsRZ_UoVuqU-lROeD4Ph1rhzAeG7sAA-ltM,9795
+scout/server/blueprints/variants/templates/variants/cancer-sv-variants.html,sha256=MbhtOx_szaTH4wPz6SkgA1JWrFri5Vsayty4YXUky4M,7164
+scout/server/blueprints/variants/templates/variants/cancer-variants.html,sha256=Y9UsAUOHn6pIi4p2n57EApJQeaxmbxLdmds5y1ceXyw,9717
 scout/server/blueprints/variants/templates/variants/components.html,sha256=Oa3MU0DokDDeTx8eD_EQXop5UmjTFHv7SdZUlpCBl04,19150
 scout/server/blueprints/variants/templates/variants/fusion-variants.html,sha256=XGaLgWobzeFHwyQLXr_Yq9THssf8tGU91VbFKdGOFBg,4801
 scout/server/blueprints/variants/templates/variants/indicators.html,sha256=5IPiNgEB_JmYpvD6_Mpx9wd1gmKpsVnTm-HKfuBsKXg,5081
-scout/server/blueprints/variants/templates/variants/mei-variants.html,sha256=E5nkN7I5PtfizYKf3wuhm0xLf4rdgvDmC6EI2x1WQZA,6093
-scout/server/blueprints/variants/templates/variants/str-variants.html,sha256=Hkn6gO0Cjc8APkdNAMfya87yIecqtEzeftIP6WjDP2g,11210
-scout/server/blueprints/variants/templates/variants/sv-variants.html,sha256=7SZEkk4wjNOmgLdBcRKnNC8jdiLgPDsKey5CsQR1x8A,6794
-scout/server/blueprints/variants/templates/variants/utils.html,sha256=tAggwsNLqPp2YW8XH5Q7HkBTiGbYB_NmptmbYIfE4xs,53129
-scout/server/blueprints/variants/templates/variants/variants.html,sha256=eRbO7vnbH2Ainv7Lq9VFnLaijLwFSTX_XiHDyhtDEYo,8541
+scout/server/blueprints/variants/templates/variants/mei-variants.html,sha256=Lb_xNjUh15UCM7s3AvRGYpKSvQmJZYZU5qU-zoRs3UU,6008
+scout/server/blueprints/variants/templates/variants/str-variants.html,sha256=bMDUOB_YyZHjh3Z9LxlhlcTIG436X8rIlG1EgGrosa4,11160
+scout/server/blueprints/variants/templates/variants/sv-variants.html,sha256=jmpofUnCsXXFcvMHniuOMIJN37FV1E7dPY6phLhdDf4,6714
+scout/server/blueprints/variants/templates/variants/utils.html,sha256=VVDCG1oiRM3v0W8Ga03Ym3m1dCYkjgmy1m9PJrGuDQ0,53768
+scout/server/blueprints/variants/templates/variants/variants.html,sha256=Nhgbkf0UCYHFZNE-4ilbp7PbYckXx3irTJZcaFohH5s,8461
 scout/server/extensions/__init__.py,sha256=s6qkGSFNRi_tP7yoeoXB5UarvLHidaK1Yw2Pae7Py90,1366
 scout/server/extensions/beacon_extension.py,sha256=aFILa3hdjg3uQATwY2daHMW_iTPHLybRlZL-fBkpMxI,9963
 scout/server/extensions/bionano_extension.py,sha256=Ov645TQgRusDapqqw82XK1QkTR_pI76-jcQRR2qKnmA,7097
@@ -695,8 +695,8 @@ scout/utils/link.py,sha256=HpQvwu0hmuCrs7TcAExLmOzEGr3glWuu8iaW0ao5pEA,9011
 scout/utils/md5.py,sha256=KkgdxOf7xbF9AF40ZjQKCgWaxFWJ9tp9RKjd8SU6IoA,649
 scout/utils/scout_requests.py,sha256=6R8boknrfwlmrRQ2txD81lfVtqUK_iabywEiVyIiZfQ,12685
 scout/utils/track_resources.py,sha256=eUjSEe-Ff8BIb4BHPC_COkJocQO2PaWueiPz1GAuiwY,2614
-scout_browser-4.103.1.dist-info/METADATA,sha256=2M-_b7t4sUVFinaL396kgjRk5dpX7cWsnTJieF8vYWU,15527
-scout_browser-4.103.1.dist-info/WHEEL,sha256=qtCwoSJWgHk21S1Kb4ihdzI2rlJ1ZKaIurTj_ngOhyQ,87
-scout_browser-4.103.1.dist-info/entry_points.txt,sha256=q_mxFwbMFTwXRDDIRVcqKram2ubMVmvs3CSNvZri1nY,45
-scout_browser-4.103.1.dist-info/licenses/LICENSE,sha256=TM1Y9Cqbwk55JVfxD-_bpGLtZQAeN9RovQlqHK6eOTY,1485
-scout_browser-4.103.1.dist-info/RECORD,,
+scout_browser-4.103.3.dist-info/METADATA,sha256=3hBmvP8CtVpqYAwDzR4kK6FU9WoU8u6ft-4ufmm5b5A,15527
+scout_browser-4.103.3.dist-info/WHEEL,sha256=qtCwoSJWgHk21S1Kb4ihdzI2rlJ1ZKaIurTj_ngOhyQ,87
+scout_browser-4.103.3.dist-info/entry_points.txt,sha256=q_mxFwbMFTwXRDDIRVcqKram2ubMVmvs3CSNvZri1nY,45
+scout_browser-4.103.3.dist-info/licenses/LICENSE,sha256=TM1Y9Cqbwk55JVfxD-_bpGLtZQAeN9RovQlqHK6eOTY,1485
+scout_browser-4.103.3.dist-info/RECORD,,