scout-browser 4.101.0__py3-none-any.whl → 4.103.0__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (87) hide show
  1. scout/adapter/mongo/case.py +26 -122
  2. scout/adapter/mongo/clinvar.py +98 -32
  3. scout/adapter/mongo/event.py +0 -47
  4. scout/adapter/mongo/hgnc.py +7 -2
  5. scout/adapter/mongo/omics_variant.py +8 -0
  6. scout/adapter/mongo/variant_loader.py +12 -4
  7. scout/build/variant/variant.py +1 -0
  8. scout/commands/load/variants.py +1 -1
  9. scout/commands/update/user.py +87 -49
  10. scout/constants/__init__.py +4 -0
  11. scout/constants/clinvar.py +10 -0
  12. scout/constants/igv_tracks.py +6 -2
  13. scout/constants/phenotype.py +1 -0
  14. scout/constants/variant_tags.py +18 -0
  15. scout/demo/NIST.trgt.stranger.vcf.gz +0 -0
  16. scout/demo/NIST.trgt.stranger.vcf.gz.tbi +0 -0
  17. scout/demo/__init__.py +1 -0
  18. scout/load/hpo.py +8 -2
  19. scout/models/clinvar.py +86 -0
  20. scout/parse/variant/coordinates.py +5 -1
  21. scout/parse/variant/gene.py +5 -9
  22. scout/parse/variant/genotype.py +66 -42
  23. scout/parse/variant/variant.py +2 -0
  24. scout/server/app.py +71 -2
  25. scout/server/blueprints/alignviewers/controllers.py +8 -6
  26. scout/server/blueprints/alignviewers/templates/alignviewers/igv_viewer.html +4 -0
  27. scout/server/blueprints/alignviewers/templates/alignviewers/utils.html +1 -1
  28. scout/server/blueprints/cases/controllers.py +57 -29
  29. scout/server/blueprints/cases/templates/cases/case_report.html +28 -90
  30. scout/server/blueprints/cases/templates/cases/matchmaker.html +1 -1
  31. scout/server/blueprints/cases/templates/cases/phenotype.html +1 -1
  32. scout/server/blueprints/cases/templates/cases/utils.html +34 -53
  33. scout/server/blueprints/cases/views.py +32 -33
  34. scout/server/blueprints/clinvar/controllers.py +235 -54
  35. scout/server/blueprints/clinvar/form.py +38 -1
  36. scout/server/blueprints/clinvar/static/form_style.css +8 -1
  37. scout/server/blueprints/clinvar/templates/clinvar/clinvar_onc_submissions.html +200 -0
  38. scout/server/blueprints/clinvar/templates/clinvar/clinvar_submissions.html +3 -2
  39. scout/server/blueprints/clinvar/templates/clinvar/components.html +198 -0
  40. scout/server/blueprints/clinvar/templates/clinvar/multistep_add_onc_variant.html +187 -0
  41. scout/server/blueprints/clinvar/templates/clinvar/multistep_add_variant.html +9 -348
  42. scout/server/blueprints/clinvar/templates/clinvar/scripts.html +193 -0
  43. scout/server/blueprints/clinvar/views.py +90 -13
  44. scout/server/blueprints/diagnoses/controllers.py +4 -8
  45. scout/server/blueprints/diagnoses/templates/diagnoses/diagnoses.html +1 -1
  46. scout/server/blueprints/diagnoses/templates/diagnoses/disease_term.html +1 -1
  47. scout/server/blueprints/diagnoses/views.py +2 -2
  48. scout/server/blueprints/institutes/controllers.py +148 -75
  49. scout/server/blueprints/institutes/forms.py +1 -0
  50. scout/server/blueprints/institutes/templates/overview/cases.html +1 -1
  51. scout/server/blueprints/institutes/templates/overview/gene_variants.html +15 -6
  52. scout/server/blueprints/institutes/templates/overview/institute_sidebar.html +28 -2
  53. scout/server/blueprints/institutes/templates/overview/utils.html +1 -1
  54. scout/server/blueprints/institutes/views.py +17 -4
  55. scout/server/blueprints/login/controllers.py +2 -1
  56. scout/server/blueprints/login/views.py +5 -2
  57. scout/server/blueprints/mme/templates/mme/mme_submissions.html +2 -2
  58. scout/server/blueprints/omics_variants/templates/omics_variants/outliers.html +2 -2
  59. scout/server/blueprints/omics_variants/views.py +2 -2
  60. scout/server/blueprints/phenotypes/controllers.py +15 -2
  61. scout/server/blueprints/phenotypes/templates/phenotypes/hpo_terms.html +1 -1
  62. scout/server/blueprints/variant/controllers.py +11 -12
  63. scout/server/blueprints/variant/templates/variant/cancer-variant.html +2 -1
  64. scout/server/blueprints/variant/templates/variant/components.html +0 -1
  65. scout/server/blueprints/variant/templates/variant/sv-variant.html +2 -1
  66. scout/server/blueprints/variant/templates/variant/utils.html +1 -1
  67. scout/server/blueprints/variant/templates/variant/variant.html +2 -2
  68. scout/server/blueprints/variant/templates/variant/variant_details.html +100 -84
  69. scout/server/blueprints/variant/utils.py +25 -0
  70. scout/server/blueprints/variants/controllers.py +11 -42
  71. scout/server/blueprints/variants/templates/variants/cancer-variants.html +5 -3
  72. scout/server/blueprints/variants/templates/variants/str-variants.html +4 -1
  73. scout/server/blueprints/variants/templates/variants/sv-variants.html +3 -3
  74. scout/server/blueprints/variants/templates/variants/utils.html +4 -0
  75. scout/server/blueprints/variants/templates/variants/variants.html +4 -4
  76. scout/server/blueprints/variants/views.py +9 -8
  77. scout/server/config.py +3 -0
  78. scout/server/extensions/beacon_extension.py +7 -2
  79. scout/server/extensions/clinvar_extension.py +2 -2
  80. scout/server/templates/bootstrap_global.html +11 -1
  81. scout/server/templates/layout.html +6 -1
  82. scout/server/utils.py +24 -3
  83. {scout_browser-4.101.0.dist-info → scout_browser-4.103.0.dist-info}/METADATA +1 -1
  84. {scout_browser-4.101.0.dist-info → scout_browser-4.103.0.dist-info}/RECORD +87 -81
  85. {scout_browser-4.101.0.dist-info → scout_browser-4.103.0.dist-info}/WHEEL +0 -0
  86. {scout_browser-4.101.0.dist-info → scout_browser-4.103.0.dist-info}/entry_points.txt +0 -0
  87. {scout_browser-4.101.0.dist-info → scout_browser-4.103.0.dist-info}/licenses/LICENSE +0 -0
@@ -4,22 +4,22 @@ scout/adapter/client.py,sha256=IuajRsEwTG41ZP14X09Q1Cj94zIgmIvUtlXfcAFn0EA,1513
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  scout/adapter/mongo/__init__.py,sha256=NdHYCUXWUAuX5cUS3-6HCws2hW9uoGep8i0SC-oJd3k,31
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  scout/adapter/mongo/acmg.py,sha256=v2Zuw-6APVmcnBnNXa18WJEu2vj5GUhZNiKMkruJsBI,4170
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  scout/adapter/mongo/base.py,sha256=iIa2AjGNztKHcZzolY0T6r7Oh0guj6R1putztp4OTNY,4427
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- scout/adapter/mongo/case.py,sha256=Cqb_uWbW5gnAoOMoJVK9LYeCrJEE-M3fgI97-3t6gbc,66613
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+ scout/adapter/mongo/case.py,sha256=udbugVMaza3qpIdQ4C9NpDkBEg1WN0MVakdWNow5cwA,63093
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  scout/adapter/mongo/case_events.py,sha256=slHR4XJF9vRuEbuInJKMMAImLF8m7tHWVfGP42fbXr0,26859
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  scout/adapter/mongo/case_group.py,sha256=tG8DuO0rNYepV4k0yCGPqssODErc0HMsAypg3mfhcV0,1575
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  scout/adapter/mongo/ccv.py,sha256=VIz-Yqzm-1UVPDKvZkBllO4BOKXzvKCXcQUjTtZCHTI,4165
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- scout/adapter/mongo/clinvar.py,sha256=e11k6mkJNjGOAENx9vaXGl8SOWM88Q8e8qtShxeFzuE,19521
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+ scout/adapter/mongo/clinvar.py,sha256=U48oocMB40-JZfajJ3PBmtS5ZUFeMfnhokB4o3iHNTg,22712
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  scout/adapter/mongo/cytoband.py,sha256=2NoIAoQ7RPqcipiSymD2O9qH8lXscP3T5ejquOrD7uQ,2622
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  scout/adapter/mongo/disease_terms.py,sha256=4qcQRLuP5xn_RkB2RlNtwCrONmDuWwdlngZrj87BUEo,5637
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- scout/adapter/mongo/event.py,sha256=xC6VdfZUU8tIPKZrCklD-zX3wgfZD09ze5wrpyLbkIA,20245
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+ scout/adapter/mongo/event.py,sha256=Xoq009ht7sRXkxglvO74n-LVa9gpA96j4yXiEmH6VnI,18684
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  scout/adapter/mongo/filter.py,sha256=rIdjiDJCrNDeTNgssKm7n1HTxne72jvlX2I3FQjQGo8,9687
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- scout/adapter/mongo/hgnc.py,sha256=P80WdIFkpFDeR6Pa0H-pgeScGrZdCviWVL4rqR5Aqvk,16547
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+ scout/adapter/mongo/hgnc.py,sha256=S7CFw1DAP-jHGgybw-3H2Dozn5s1rYxnJMHnl8GArKU,16680
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  scout/adapter/mongo/hpo.py,sha256=ps2Pix3sGeea7DenboZVP5j7Vh9WAgX3-sgpbAj0Eck,6871
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  scout/adapter/mongo/index.py,sha256=TZPVv6xBWsEtZpBUWp5uhjuPjQMfVss4lZZju49g1Lw,3577
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  scout/adapter/mongo/institute.py,sha256=SaA1mRxIZHtMfriMnd0yKiup-xSAG5g0ry9Achra9Tk,6646
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  scout/adapter/mongo/managed_variant.py,sha256=mPbp64nMDwAij8zvBbFGjI3MLbk6CC-OO9RTwtEIi44,8451
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  scout/adapter/mongo/matchmaker.py,sha256=amTvFOlUbrt1RmecY_8hPY6bO3j79lc2UbmzlCQcRuk,6378
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- scout/adapter/mongo/omics_variant.py,sha256=0KuzCEsmxXDNgD3rgrwWT-mUANP3sdhl_Ekv2wIDGrU,8539
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+ scout/adapter/mongo/omics_variant.py,sha256=-Z4UCqeybbQQix1fWdOTKa6acuytPM2r8c-6pAv-gRY,8910
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  scout/adapter/mongo/panel.py,sha256=d1oMEYAiDGybLmlbbf3-fQdCdU0-T7x2XdIUwZGthYk,20031
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  scout/adapter/mongo/phenomodel.py,sha256=cypSS8YRzu98Bf1kC0orfrLNn_ZQSYCK8e4mNR5PaPY,2572
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  scout/adapter/mongo/query.py,sha256=zXAT5lWadRbhCNw5w161uCKzoUyTuUSlCm32P8aBa_M,36315
@@ -28,7 +28,7 @@ scout/adapter/mongo/transcript.py,sha256=3U1qtyxZ1DnrzdBJm_emJXISMYFKJuX_zAKynUt
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  scout/adapter/mongo/user.py,sha256=QoQnRWqi_dV3ZwGzBonEU6Ap9TgMDf2x_C5UIqG0pa0,2569
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  scout/adapter/mongo/variant.py,sha256=IMZcRr43b3XsDqi9kpymobAj_CPVQkN_rxLMfxQ75LI,36267
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  scout/adapter/mongo/variant_events.py,sha256=yNnMM58P1LbYFw73rWzti6l2zWa_G93ozUTbVkcz4_I,33475
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- scout/adapter/mongo/variant_loader.py,sha256=8fBEA_SrBJcvDgF5tceYfMQNnZTt6hwM4zcTjOUeRO0,28397
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+ scout/adapter/mongo/variant_loader.py,sha256=GPvqfcL5hmd4fUKbTshwKZHvT_Wx4f_vrJ_lEi4Jjk0,28732
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  scout/build/__init__.py,sha256=GUWEaXTpwsJil_KtrXBQJpZIwCQFSgo8NlK49R9IkA8,521
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  scout/build/acmg.py,sha256=M21MrrP_dtEyOuu6t-jBDdaqYcHPMLcwJlt9fHG2ycE,1523
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  scout/build/case.py,sha256=LtYx6zQcCoGCss48qf7uluzTlXVH0Pl-WhqYzkbIcZ8,11510
@@ -50,7 +50,7 @@ scout/build/variant/compound.py,sha256=tYikQ4PmgAH1_yrE9uYaUX4_EoAs_XEiT8JWAjrZu
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  scout/build/variant/gene.py,sha256=Fj_ouJtNAZOvxYVo9oVXaYJE5_zx-mJqL-uOARD4ku8,3857
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  scout/build/variant/genotype.py,sha256=QDTZWFB8ix9Zd1m9UPWgT008i6rC7gT-uFzRr9GniDU,1009
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  scout/build/variant/transcript.py,sha256=hf_led1kdT3hVEwtHdORhBSk6a6o_zEDJ0z4ZF8IlFA,1205
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- scout/build/variant/variant.py,sha256=KHBf5dZt3i0tz8pN4Bujp7edI754cnb5jN4wcsTesVc,18740
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+ scout/build/variant/variant.py,sha256=Iw9vxWSfyGgD3XtknqAVAmAc87NxpbiHKZvCJS-P8v4,18811
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  scout/commands/__init__.py,sha256=VrenBj1daCAnIsBZtvdbv1SuxmODT_TTY8YcxWItrXE,22
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  scout/commands/base.py,sha256=WmUko96zsPbC3cUIezy0CAOOGKBFU-BoW-BPAhLORCE,4610
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  scout/commands/convert.py,sha256=T5dkFjRKSTf7dBS9uKIW4wEmdL13vKzKTLRy4nvf6Vg,1090
@@ -93,7 +93,7 @@ scout/commands/load/region.py,sha256=psICLlMf5WBdSCgXsJZUsM8fICsTJB3Q6U6dB5S6w_8
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  scout/commands/load/report.py,sha256=DrnyOJcLbOUUJHzI3jwlj955zYohvjuTeeoeUS_ZU8Q,3564
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  scout/commands/load/research.py,sha256=t5a6kVVPX3aZtDx20VNNXhkAGTB_gCln5Ejjy_JjYGE,4418
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  scout/commands/load/user.py,sha256=eDHt_byU3DVhI9D-3GwEW_VpQbIF6bPEORAieCTcdUc,1412
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- scout/commands/load/variants.py,sha256=XnF5p_ZAltPgOnmGYtS4tuvJcVEZf7L6K9p6IdYfuEQ,9972
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+ scout/commands/load/variants.py,sha256=3hloGZ51MlAc-1OU9gMsKr4KQbwcR5__5fQRVPFCPpk,9957
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  scout/commands/setup/setup_scout.py,sha256=txS4tRwk1FMlS_qkyJl0XaZU0rFivqVCMqMi7iZtw78,9254
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  scout/commands/update/__init__.py,sha256=yKNjRTVFsSTko8T7znfMqSI_HsGPN2-z1c0twkwO5uE,25
@@ -109,7 +109,7 @@ scout/commands/update/omim.py,sha256=s39qterBGhtBfW7Uc-IJabni93PIhT8shqVbkmQBb9k
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  scout/commands/update/panel.py,sha256=990shZ15k5pwHUkd767o8oQ5iqVIpgRA7N_9yv1_eqc,2912
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  scout/commands/update/phenotype_groups.py,sha256=Ll0COlEckn1Z7VAJbFbG2EZ5FKFVEcff0sWiUsx-D-g,1980
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- scout/commands/update/user.py,sha256=s5s7nh9UABBO9P6L11_j5tsi4iPxzieHw40yDhc4PWM,2497
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+ scout/commands/update/user.py,sha256=WGilEwo9aVv3_z7ZBJBSoeY7sGhPU7UHcp3rERTcJgk,3681
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@@ -125,23 +125,23 @@ scout/commands/view/intervals.py,sha256=8Pofxy0DwL2Euh3SdnTLLWsU6DjLNOwIGdxeCS83
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  scout/commands/view/users.py,sha256=MKlmhDYRM7Yf-Trmi1ijEuqsDIUn326bdFADyDs7XYg,832
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- scout/constants/__init__.py,sha256=F17Q75A0RkvYzXujvqjwP5N2nXKVsIGu5UF1wI8_dYw,5951
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+ scout/constants/__init__.py,sha256=yJga2nPS9l0oC89jwE2FXt7zmMC8Fr8AW1rIgwfvaDU,6067
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  scout/constants/ccv.py,sha256=YP82qWCrjv3JB8d2LkUdBlBZolk0uF3nhNmkNgmebiI,9734
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- scout/constants/clinvar.py,sha256=nr7KhwMIO_7taNQokRJlpgZfenMlKsdPIMpdOx3TwKY,5594
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+ scout/constants/clinvar.py,sha256=MGGwEaKIsvrG6EU9CYIeFmOuxQnQ-c6haoE9ePUL2z0,5946
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- scout/constants/igv_tracks.py,sha256=584SdO6qJHAcfCxHJQaM4YAnzu4M_uviJIUg6gt_jok,4675
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+ scout/constants/igv_tracks.py,sha256=rhCrmPGLVUMcFrLfjswzeO2UeKIsf3dgjgyepKjh3sM,4777
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- scout/constants/phenotype.py,sha256=MrbXirisR_7GPnxV3NOj3-BoM9CvtGgFZj7PfJu85RM,2331
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+ scout/constants/phenotype.py,sha256=FqTZJOmBE5vxWU_XPrLi1nkPix5d5WAxLEpjw9Hz4Ak,2381
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- scout/constants/variant_tags.py,sha256=NnpcJGRDycq3PIrDQsd57ynJ8NzmJETICBVjzGKZlSg,17907
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+ scout/constants/variant_tags.py,sha256=Ku5pPLcnFwmjViScTBR8TSUP9HAfrKAkISZ4xfL2mNg,18821
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@@ -189,7 +189,9 @@ scout/demo/ADM1059A2.d4,sha256=M4ubAb6oVkr8dOkvkROkTr76nACfE4eSWHiUKN5FRLg,61119
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- scout/demo/__init__.py,sha256=ggXVz3_6ZUAzIZtuaK8kz3C6BuxSfaQ56PAzinJcYoI,2061
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+ scout/demo/NIST.trgt.stranger.vcf.gz,sha256=st-MDy7qyBbCEulaLcOt04ZpTTnEQBQHH7BpWDjuZhE,9392
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+ scout/demo/NIST.trgt.stranger.vcf.gz.tbi,sha256=SUfn5hujVKZHznh2EbulqzKEfSFDC7pjx8J9PitjXOQ,3771
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+ scout/demo/__init__.py,sha256=oqrUngZAPCUFWV1OWeFbEewatgFd91HLKjoWPoqcGHM,2137
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@@ -375,7 +377,7 @@ scout/load/cytoband.py,sha256=vPU8oQm31WMcnaG9QG2le9pe_8g70O1S0q1Ljj3Ce84,1356
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- scout/load/hpo.py,sha256=ZWYjV9j6OfpI-ZZuhTQVEs_xgLa7ST2KuvYLW6ku0PY,2474
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+ scout/load/hpo.py,sha256=UAUbklr_KIHLutBBW2N3KwInPLFuiufjh8Ke-38m_Pc,2679
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@@ -388,7 +390,7 @@ scout/log/log.py,sha256=EPtd6Z1HMSvmuDHdElLUcLhPsz36LNQSX09Lg3m1jCY,1549
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- scout/models/clinvar.py,sha256=fTmQYV3yRxQn1JBOwKnovYmkl19H14HKRE2zY9JA93U,3102
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+ scout/models/clinvar.py,sha256=HHnTHnJdO054HDNlTQv6EHdzjsnwM0c_Aq6ZznoMo8M,5320
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@@ -430,48 +432,48 @@ scout/parse/variant/callers.py,sha256=eA5o4Ov_v5ds__4xpif1ttj5yk2nK4GXwhYSWL4NTD
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- scout/parse/variant/coordinates.py,sha256=CU-EyD8NVgTbyIdmYDO3k-zVaMN1EDONjorDwyUSnXU,4742
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+ scout/parse/variant/coordinates.py,sha256=j3pJzH3sZguD7d3J908Jon1NuXBk4FIyL2pjTW57Tdo,4896
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- scout/parse/variant/gene.py,sha256=30SR2ck12HQW87LlRfchdgPVzOxb74aIXC2WzPL2BPk,4688
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- scout/parse/variant/genotype.py,sha256=mGgTFC6DrSEzYyAbbIfdUcnxUOxdfnpNAFzKazC4pJ0,16452
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+ scout/parse/variant/gene.py,sha256=MMLvOoQYx-e3mi9vcZv0pqzWQ0bsF7kywmXav_4xwzg,4529
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+ scout/parse/variant/genotype.py,sha256=NRUMohsWa2ADh45p7R8iDK5VYTBTrQCzq5C3OrV95D4,17471
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- scout/parse/variant/variant.py,sha256=3K7OQ2OFvAbE7s5rD8178oUvHJJ2qIcn2NeBQ8o_i60,24768
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+ scout/parse/variant/variant.py,sha256=5sIEZifYf82sDIk9d0tbBWX-K4vRXs17rxYXsCGZCpk,24883
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- scout/server/app.py,sha256=0Vmhzl7BviwbFA6ZsnXDM-E_KM6kEEWraCUxm8qMvc4,12011
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+ scout/server/app.py,sha256=NB3WXI2Xa8Wdfnonkoxb0mWeEV9gYOJhqvYc_h4ajTw,14633
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- scout/server/config.py,sha256=5EZ4F37p15tXght-hRa6d7ueX_68r4DXwjvw-mQiTzE,6252
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+ scout/server/config.py,sha256=JcT9rUDcAdm9oSk7Wwbu-Aut96-xvBQnMeQTt_-6rXs,6401
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- scout/server/utils.py,sha256=1pkT1P4EtzWpJwJkT7k48R4xgaYKgjbVoOI8CRZv1og,14023
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+ scout/server/utils.py,sha256=gNPPtbIXKenxprg1b240pkEbJZowfY4xjH9lctbpeEs,14584
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  scout/server/blueprints/__init__.py,sha256=iwhKnzeBJLKxpRVjvzwiRE63_zNpIBfaKLITauVph-0,24
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- scout/server/blueprints/alignviewers/controllers.py,sha256=9gv4hszxtXsvikJY69iMGNiUBSDGcXPg5Q83woheAjw,15252
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+ scout/server/blueprints/alignviewers/controllers.py,sha256=s8fvqOewsR9bSf-tbZFGe1ePvz5zfoMrVvEzZBe6Cmw,15268
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  scout/server/blueprints/alignviewers/templates/alignviewers/igv_sashimi_viewer.html,sha256=37ArJCraTajqWlCvyQYVfSvWCg94pRDIMvf2Y7Oe_j4,5545
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- scout/server/blueprints/alignviewers/templates/alignviewers/igv_viewer.html,sha256=LwtnLK1O4JIxwibmmBQQ4AupxdJOoFaPpQH91EuA8sk,10728
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- scout/server/blueprints/alignviewers/templates/alignviewers/utils.html,sha256=sPkIgivgYcXkESAbEODi2LeLtYyNWsUdd64xGsX8ejM,336
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+ scout/server/blueprints/alignviewers/templates/alignviewers/igv_viewer.html,sha256=rm_qcJaySQ3-Ux8Qr5JXlzWGFPAnx24fqa-XMpdcCnI,10988
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+ scout/server/blueprints/alignviewers/templates/alignviewers/utils.html,sha256=jaf4fba_RHVRymWxP32wCkR0GSZKD7PS8hYjqO8GVFI,336
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  scout/server/blueprints/cases/__init__.py,sha256=_c17kPFITFYcIVphF4V9bf0PZBer8bU3rtVWQnljKDU,52
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- scout/server/blueprints/cases/controllers.py,sha256=jao4-oa9K97wA6ExqO-MZNVopCy9lWep53QDwfjGKQo,56725
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- scout/server/blueprints/cases/views.py,sha256=6CcJ3Vgycf8gvBT-InpbNo0enRhDKNPC2W6hp6jDKas,42938
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+ scout/server/blueprints/cases/controllers.py,sha256=iXL_o8LsBYP3efBBt3_vmNPKzBfWg6Nouimz4QMBMrc,57728
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+ scout/server/blueprints/cases/views.py,sha256=qYnmXi5DpmuLEztQ9DgoOMfe-oOaGAe8JCzZ6tvormw,43092
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  scout/server/blueprints/cases/static/madeline.js,sha256=KHxKMBVlYVJODNu5QkY9hhsGkDJNoaCoCZZ0DRu0YN0,1175
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  scout/server/blueprints/cases/templates/cases/case.html,sha256=6PUQX2BYv5BYxkqZqpa9xVeNDl7MmQVRFLdV-cgWL5I,37522
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  scout/server/blueprints/cases/templates/cases/case_bionano.html,sha256=PLoRv7hDJcHwxhi-0hC9fQSZc7V_aUYHBhhQqcn_2G8,5946
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- scout/server/blueprints/cases/templates/cases/case_report.html,sha256=I-cPXq7aij3ZOluPT1CE3-d4S5ml7cSiHhFuiAu5sEI,68780
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+ scout/server/blueprints/cases/templates/cases/case_report.html,sha256=1_4QUmBUv4HoMv-1zbY6JI1MEN2Or9c9Zqu-sQDzzgo,65815
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  scout/server/blueprints/cases/templates/cases/case_tabular_view.html,sha256=ko-LDUKmIoTazMZ2nFWvPEZsgObU07RwqIkDYFjokoY,4317
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  scout/server/blueprints/cases/templates/cases/chanjo2_form.html,sha256=WwdEfVtreTOruPrUJbasGE2Zmt3FiCSHwNEcJVRmefQ,2203
@@ -481,17 +483,21 @@ scout/server/blueprints/cases/templates/cases/gene_panel.html,sha256=nq-hSL__YD5
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  scout/server/blueprints/cases/templates/cases/index.html,sha256=y91d7yI64Fbz7wS8CSsi3vcCo6rFmS0mnstUipnVHUQ,1136
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  scout/server/blueprints/cases/templates/cases/individuals_table.html,sha256=KMWlkE-1wJGcCUcv1VigSakwxeXH0qdBGptzLvx8his,11657
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  scout/server/blueprints/cases/templates/cases/institutes_sidebar.html,sha256=u0oPGHJ0ipZ1LkjHkbwlWfkUWc1h6XH1nh3tkbX17z0,4546
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- scout/server/blueprints/cases/templates/cases/matchmaker.html,sha256=kPYnmcZJ1gmx_guW52H7baT9Sw4WE0VJmLGF6N7Z3iA,13639
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- scout/server/blueprints/cases/templates/cases/phenotype.html,sha256=7vz5XPUExD6vc-wdijLKnPzaOFm9mQxOZ_ITAL3y7U8,16420
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- scout/server/blueprints/cases/templates/cases/utils.html,sha256=Jpt5uwH7IHisdd1DvxjGodFaZ9e1g3JlANpkkQ3P6kA,36973
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+ scout/server/blueprints/cases/templates/cases/matchmaker.html,sha256=odKTEVPwSakuW1kn7j_23WkgG6naMw1knpF7DJ8jCpU,13620
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+ scout/server/blueprints/cases/templates/cases/phenotype.html,sha256=C0PEB2VKbQ7i3cOtAJn4NZSzRGCHolI2VbWtOjWwk64,16416
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+ scout/server/blueprints/cases/templates/cases/utils.html,sha256=Dx-TWaK_B3Ksz8V3DkS4nX6tUUUC7R3LFPekOniFPzk,35487
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- scout/server/blueprints/clinvar/controllers.py,sha256=cqThe0iM7ltT_uF3S0bj6642DrOW5OJiWAUM-w5lShk,24972
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- scout/server/blueprints/clinvar/form.py,sha256=2h42YJzaOtsdEglxqt7F1i2ncjSU_IHNt-m4QOJytK4,5148
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- scout/server/blueprints/clinvar/views.py,sha256=p4R31xEBqvyw9bbwrB_rRe4UqIDc3HPTvhiVhZ1Z_lA,5760
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- scout/server/blueprints/clinvar/static/form_style.css,sha256=Tro2w0Su9st2ZRpt8PjF7qXYet-0n6Eyol4oh94JafU,4073
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+ scout/server/blueprints/clinvar/controllers.py,sha256=hTpGRdwmlDmd3xa-T4cTpfkGFGHrDDAEXcgToVe0juc,32211
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+ scout/server/blueprints/clinvar/form.py,sha256=pv9p3do4Z_DIdnIyqwEM8ckCmuHbnYPORqW-ezsyREs,6440
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+ scout/server/blueprints/clinvar/views.py,sha256=DfY3ua_sBvpsNvEySQuWNIv5VpICiSqIomAw_fa6A6c,8927
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+ scout/server/blueprints/clinvar/static/form_style.css,sha256=b-cDwPKMOIkivOZi3XiLP9xMwPKYCPKaUKB1QdvpEoY,4143
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- scout/server/blueprints/clinvar/templates/clinvar/clinvar_submissions.html,sha256=XvS6WR7xPy3KNB9q9sWzAsXf2QAjkxGeMaJlx6BkeVE,18694
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- scout/server/blueprints/clinvar/templates/clinvar/multistep_add_variant.html,sha256=ilDxkFUUDMy6Qzcby2BKJ21zmpI1HYI1ZC4HmrGYLpk,32953
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+ scout/server/blueprints/clinvar/templates/clinvar/clinvar_onc_submissions.html,sha256=48CzsbN0OZKQCAkxhWX2F7hmOgL-44rl911f99qrRdQ,10474
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+ scout/server/blueprints/clinvar/templates/clinvar/clinvar_submissions.html,sha256=ak5QSOXvi_Xt8JnmjIi1pDzU_NXKJiJkbqTVmw_79lI,18773
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+ scout/server/blueprints/clinvar/templates/clinvar/components.html,sha256=oO8UBUO6JG5uGad7ejII4mkUaI9BiGi1BQGpG-ETva0,9269
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+ scout/server/blueprints/clinvar/templates/clinvar/multistep_add_onc_variant.html,sha256=Sx7mZkxEIpebnGYeZpnpc2fGjKzZ1F-Nid3qJA4FXFM,9809
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+ scout/server/blueprints/clinvar/templates/clinvar/multistep_add_variant.html,sha256=tejiVcPVWNgGMKcOcAQaW9MklzslmR0YT9OMQGhDtOU,17386
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+ scout/server/blueprints/clinvar/templates/clinvar/scripts.html,sha256=cVApkmHrAGpkgOJzcXB-Ot7T7clhL_F8N3JxrLKJ6uo,6443
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  scout/server/blueprints/dashboard/forms.py,sha256=vbdkujKZxVjiZw2inNhysN3yYMPCdMPbqvKV88DamwI,501
@@ -499,11 +505,11 @@ scout/server/blueprints/dashboard/views.py,sha256=VjJI44FBfjQMR21AKminmQWmM3QT9V
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  scout/server/blueprints/diagnoses/__init__.py,sha256=sORNuH8TXn63RI7KVRSVrMrPwTzZs9gNMfPxtzUZW-U,27
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- scout/server/blueprints/diagnoses/controllers.py,sha256=h-enZ2T8lwPDFl9pVKRZ7Mr41xMyMLtmT4j4CBG6joQ,1654
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- scout/server/blueprints/diagnoses/views.py,sha256=zGfYxrrzE1qNn4wyoBdgKpfozJb6XpVEcC0sBwmPDXA,1252
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+ scout/server/blueprints/diagnoses/controllers.py,sha256=7wz3By19iZOOcBihP89KsihH-vg0AxPmi0YLcIOOcMc,1642
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+ scout/server/blueprints/diagnoses/views.py,sha256=nr8YKcCUnD7xisk32UKkv-RY2wWR8Egl3wKTrITsd3c,1307
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- scout/server/blueprints/diagnoses/templates/diagnoses/diagnoses.html,sha256=XlkzjQLGkNm9R2Ls7eqMhJE5BEXcUxI0AR-DrMFbIoY,4448
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- scout/server/blueprints/diagnoses/templates/diagnoses/disease_term.html,sha256=8EG07B5kD9FqiYinGOP2JR-y8yontoEvqwkFtp3yRlw,1844
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+ scout/server/blueprints/diagnoses/templates/diagnoses/diagnoses.html,sha256=UcGNLawdN5lTpRDmIC3VDsVfFzs9iNS7B8k5ddS57rc,4428
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+ scout/server/blueprints/diagnoses/templates/diagnoses/disease_term.html,sha256=iE-zlD3Khscv1jJey14giYfPN_JignsH_V7eLrVGcwU,1825
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  scout/server/blueprints/genes/__init__.py,sha256=LPHrbmfVhZpLGGdExFbJp_Du1NKCsVOO_eaevpsNLC8,52
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  scout/server/blueprints/genes/views.py,sha256=lFJ7izYu0CbUJo3j5TesrUhIwreZUYw9_dDqd6iG8m4,1512
@@ -511,27 +517,27 @@ scout/server/blueprints/genes/templates/genes/gene.html,sha256=a--c-IjzNKN_JW7z9
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  scout/server/blueprints/institutes/__init__.py,sha256=kGSyYrBC1QaEQBDdoMkMLfaowV7roaV5DowICi_0RSQ,65
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- scout/server/blueprints/institutes/controllers.py,sha256=0pCXP6RZx8W0Jyd4KrlSR4UpgYuTjdIB7GuomM7lUHc,34723
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- scout/server/blueprints/institutes/forms.py,sha256=uKyl1bfAFYB65P0DHMihBWhE9bvxNixAIkznuelpIBo,6810
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- scout/server/blueprints/institutes/views.py,sha256=PSpf82kW0EKZc24CPhBhuE-wXXGyIz-R6IJu7IM0IrM,9052
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+ scout/server/blueprints/institutes/controllers.py,sha256=nYAkZ2SRBQsXYm-rfMkfyxBTWGSrpsgnvGdZ9Qqsqk0,37115
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+ scout/server/blueprints/institutes/templates/overview/gene_variants.html,sha256=2D9KUxcB5Ez0iJjNDtzbEP01g4iYNKG9MkaMWsdBlak,8853
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+ scout/server/blueprints/institutes/templates/overview/institute_sidebar.html,sha256=cBr3xfns7BO4Gn-YGyDc-wG3hHB-mC-lfbMYu7nFcxQ,5800
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- scout/server/blueprints/institutes/templates/overview/utils.html,sha256=zkoqVNdBaeUtGFQfCNb7Vo3GlOypjg42XS0GvHlih7o,34297
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- scout/server/blueprints/login/controllers.py,sha256=AWz48_-kdlhmVXIoXOHmzCySSKjUiPQy8KfKC_ei1So,5696
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- scout/server/blueprints/login/views.py,sha256=Yo2aTkOPt0s6qwnMDLL92OuskQmTGXhhwMFQV56Y4r0,3386
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+ scout/server/blueprints/login/views.py,sha256=xyNWwLe3cOp25LniSHttgccUwLhAshnWHpSTudLoluo,3486
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@@ -549,11 +555,11 @@ scout/server/blueprints/managed_variants/templates/managed_variants/managed_vari
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- scout/server/blueprints/mme/templates/mme/mme_submissions.html,sha256=OUO_3b0qEat82g8CWX9sy6-pyWdTDtIWs-y2fnhM1Io,4681
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+ scout/server/blueprints/mme/templates/mme/mme_submissions.html,sha256=VjahYVVpvyYKStbRmnvlGoHBG4k7W04hYytgTrITsCA,4707
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- scout/server/blueprints/omics_variants/views.py,sha256=EuF3DCAFuOzX-86al0_IfOqnqH3B_RhypQq313HNfLA,3725
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+ scout/server/blueprints/omics_variants/views.py,sha256=OnLP4-aOna3bKqa8LB8LwFMl4fLvGWo5STAQSXKI7nM,3714
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+ scout/server/blueprints/omics_variants/templates/omics_variants/outliers.html,sha256=tf46LDyQbxM8vshTs-MkZiMc0ClV-9LDUVRAtxNv5o4,14005
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@@ -570,9 +576,9 @@ scout/server/blueprints/phenomodels/views.py,sha256=5RI5Df56C8HkcXi5wVpgEdxp7cf5
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- scout/server/blueprints/phenotypes/controllers.py,sha256=Wkg7k96Pw8dkBGdG62qljkgOqy3almGEJdNrnxjeqKc,995
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- scout/server/blueprints/phenotypes/templates/phenotypes/hpo_terms.html,sha256=JDdoy9d0NyBJgJgB59outiCKUmkGQCtDz-sdxJGgEic,2327
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+ scout/server/blueprints/variant/templates/variant/cancer-variant.html,sha256=moeQ2I-gIGG1ecG-7Aa2f9EdA_uLYu-pUkEwLfpr0O4,14876
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- scout/server/extensions/clinvar_extension.py,sha256=X3LsJZ4XL8hr8FyqhW1Zn4OmXEG0_edCZRHtWhTuLVk,6332
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@@ -664,8 +670,8 @@ scout/server/static/custom_images.js,sha256=7GLudzi3518kWkHuSJGbiqkiU1WV3HofXI46
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+ scout/server/templates/bootstrap_global.html,sha256=6JrQGCdrSM17VJhcUTPBMSEHRkaOAo1w8Hcsvg6uhRE,2897
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  scout/server/translations/sv/LC_MESSAGES/messages.mo,sha256=eI53pCtlYj1MXduDicMZRxBhgOV_TlmMUpH7IhncgDY,4452
@@ -689,8 +695,8 @@ scout/utils/link.py,sha256=HpQvwu0hmuCrs7TcAExLmOzEGr3glWuu8iaW0ao5pEA,9011
689
695
  scout/utils/md5.py,sha256=KkgdxOf7xbF9AF40ZjQKCgWaxFWJ9tp9RKjd8SU6IoA,649
690
696
  scout/utils/scout_requests.py,sha256=6R8boknrfwlmrRQ2txD81lfVtqUK_iabywEiVyIiZfQ,12685
691
697
  scout/utils/track_resources.py,sha256=eUjSEe-Ff8BIb4BHPC_COkJocQO2PaWueiPz1GAuiwY,2614
692
- scout_browser-4.101.0.dist-info/METADATA,sha256=Mk2AmmUzaWO6IslzOG_LTXNcBp8qK6l3O7CQO_23fHw,15527
693
- scout_browser-4.101.0.dist-info/WHEEL,sha256=qtCwoSJWgHk21S1Kb4ihdzI2rlJ1ZKaIurTj_ngOhyQ,87
694
- scout_browser-4.101.0.dist-info/entry_points.txt,sha256=q_mxFwbMFTwXRDDIRVcqKram2ubMVmvs3CSNvZri1nY,45
695
- scout_browser-4.101.0.dist-info/licenses/LICENSE,sha256=TM1Y9Cqbwk55JVfxD-_bpGLtZQAeN9RovQlqHK6eOTY,1485
696
- scout_browser-4.101.0.dist-info/RECORD,,
698
+ scout_browser-4.103.0.dist-info/METADATA,sha256=zEWBr5oisQACc7MxeVxLmS10uvRZd_KI9mS46lsiJe0,15527
699
+ scout_browser-4.103.0.dist-info/WHEEL,sha256=qtCwoSJWgHk21S1Kb4ihdzI2rlJ1ZKaIurTj_ngOhyQ,87
700
+ scout_browser-4.103.0.dist-info/entry_points.txt,sha256=q_mxFwbMFTwXRDDIRVcqKram2ubMVmvs3CSNvZri1nY,45
701
+ scout_browser-4.103.0.dist-info/licenses/LICENSE,sha256=TM1Y9Cqbwk55JVfxD-_bpGLtZQAeN9RovQlqHK6eOTY,1485
702
+ scout_browser-4.103.0.dist-info/RECORD,,