scout-browser 4.101.0__py3-none-any.whl → 4.103.0__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- scout/adapter/mongo/case.py +26 -122
- scout/adapter/mongo/clinvar.py +98 -32
- scout/adapter/mongo/event.py +0 -47
- scout/adapter/mongo/hgnc.py +7 -2
- scout/adapter/mongo/omics_variant.py +8 -0
- scout/adapter/mongo/variant_loader.py +12 -4
- scout/build/variant/variant.py +1 -0
- scout/commands/load/variants.py +1 -1
- scout/commands/update/user.py +87 -49
- scout/constants/__init__.py +4 -0
- scout/constants/clinvar.py +10 -0
- scout/constants/igv_tracks.py +6 -2
- scout/constants/phenotype.py +1 -0
- scout/constants/variant_tags.py +18 -0
- scout/demo/NIST.trgt.stranger.vcf.gz +0 -0
- scout/demo/NIST.trgt.stranger.vcf.gz.tbi +0 -0
- scout/demo/__init__.py +1 -0
- scout/load/hpo.py +8 -2
- scout/models/clinvar.py +86 -0
- scout/parse/variant/coordinates.py +5 -1
- scout/parse/variant/gene.py +5 -9
- scout/parse/variant/genotype.py +66 -42
- scout/parse/variant/variant.py +2 -0
- scout/server/app.py +71 -2
- scout/server/blueprints/alignviewers/controllers.py +8 -6
- scout/server/blueprints/alignviewers/templates/alignviewers/igv_viewer.html +4 -0
- scout/server/blueprints/alignviewers/templates/alignviewers/utils.html +1 -1
- scout/server/blueprints/cases/controllers.py +57 -29
- scout/server/blueprints/cases/templates/cases/case_report.html +28 -90
- scout/server/blueprints/cases/templates/cases/matchmaker.html +1 -1
- scout/server/blueprints/cases/templates/cases/phenotype.html +1 -1
- scout/server/blueprints/cases/templates/cases/utils.html +34 -53
- scout/server/blueprints/cases/views.py +32 -33
- scout/server/blueprints/clinvar/controllers.py +235 -54
- scout/server/blueprints/clinvar/form.py +38 -1
- scout/server/blueprints/clinvar/static/form_style.css +8 -1
- scout/server/blueprints/clinvar/templates/clinvar/clinvar_onc_submissions.html +200 -0
- scout/server/blueprints/clinvar/templates/clinvar/clinvar_submissions.html +3 -2
- scout/server/blueprints/clinvar/templates/clinvar/components.html +198 -0
- scout/server/blueprints/clinvar/templates/clinvar/multistep_add_onc_variant.html +187 -0
- scout/server/blueprints/clinvar/templates/clinvar/multistep_add_variant.html +9 -348
- scout/server/blueprints/clinvar/templates/clinvar/scripts.html +193 -0
- scout/server/blueprints/clinvar/views.py +90 -13
- scout/server/blueprints/diagnoses/controllers.py +4 -8
- scout/server/blueprints/diagnoses/templates/diagnoses/diagnoses.html +1 -1
- scout/server/blueprints/diagnoses/templates/diagnoses/disease_term.html +1 -1
- scout/server/blueprints/diagnoses/views.py +2 -2
- scout/server/blueprints/institutes/controllers.py +148 -75
- scout/server/blueprints/institutes/forms.py +1 -0
- scout/server/blueprints/institutes/templates/overview/cases.html +1 -1
- scout/server/blueprints/institutes/templates/overview/gene_variants.html +15 -6
- scout/server/blueprints/institutes/templates/overview/institute_sidebar.html +28 -2
- scout/server/blueprints/institutes/templates/overview/utils.html +1 -1
- scout/server/blueprints/institutes/views.py +17 -4
- scout/server/blueprints/login/controllers.py +2 -1
- scout/server/blueprints/login/views.py +5 -2
- scout/server/blueprints/mme/templates/mme/mme_submissions.html +2 -2
- scout/server/blueprints/omics_variants/templates/omics_variants/outliers.html +2 -2
- scout/server/blueprints/omics_variants/views.py +2 -2
- scout/server/blueprints/phenotypes/controllers.py +15 -2
- scout/server/blueprints/phenotypes/templates/phenotypes/hpo_terms.html +1 -1
- scout/server/blueprints/variant/controllers.py +11 -12
- scout/server/blueprints/variant/templates/variant/cancer-variant.html +2 -1
- scout/server/blueprints/variant/templates/variant/components.html +0 -1
- scout/server/blueprints/variant/templates/variant/sv-variant.html +2 -1
- scout/server/blueprints/variant/templates/variant/utils.html +1 -1
- scout/server/blueprints/variant/templates/variant/variant.html +2 -2
- scout/server/blueprints/variant/templates/variant/variant_details.html +100 -84
- scout/server/blueprints/variant/utils.py +25 -0
- scout/server/blueprints/variants/controllers.py +11 -42
- scout/server/blueprints/variants/templates/variants/cancer-variants.html +5 -3
- scout/server/blueprints/variants/templates/variants/str-variants.html +4 -1
- scout/server/blueprints/variants/templates/variants/sv-variants.html +3 -3
- scout/server/blueprints/variants/templates/variants/utils.html +4 -0
- scout/server/blueprints/variants/templates/variants/variants.html +4 -4
- scout/server/blueprints/variants/views.py +9 -8
- scout/server/config.py +3 -0
- scout/server/extensions/beacon_extension.py +7 -2
- scout/server/extensions/clinvar_extension.py +2 -2
- scout/server/templates/bootstrap_global.html +11 -1
- scout/server/templates/layout.html +6 -1
- scout/server/utils.py +24 -3
- {scout_browser-4.101.0.dist-info → scout_browser-4.103.0.dist-info}/METADATA +1 -1
- {scout_browser-4.101.0.dist-info → scout_browser-4.103.0.dist-info}/RECORD +87 -81
- {scout_browser-4.101.0.dist-info → scout_browser-4.103.0.dist-info}/WHEEL +0 -0
- {scout_browser-4.101.0.dist-info → scout_browser-4.103.0.dist-info}/entry_points.txt +0 -0
- {scout_browser-4.101.0.dist-info → scout_browser-4.103.0.dist-info}/licenses/LICENSE +0 -0
@@ -4,22 +4,22 @@ scout/adapter/client.py,sha256=IuajRsEwTG41ZP14X09Q1Cj94zIgmIvUtlXfcAFn0EA,1513
|
|
4
4
|
scout/adapter/mongo/__init__.py,sha256=NdHYCUXWUAuX5cUS3-6HCws2hW9uoGep8i0SC-oJd3k,31
|
5
5
|
scout/adapter/mongo/acmg.py,sha256=v2Zuw-6APVmcnBnNXa18WJEu2vj5GUhZNiKMkruJsBI,4170
|
6
6
|
scout/adapter/mongo/base.py,sha256=iIa2AjGNztKHcZzolY0T6r7Oh0guj6R1putztp4OTNY,4427
|
7
|
-
scout/adapter/mongo/case.py,sha256=
|
7
|
+
scout/adapter/mongo/case.py,sha256=udbugVMaza3qpIdQ4C9NpDkBEg1WN0MVakdWNow5cwA,63093
|
8
8
|
scout/adapter/mongo/case_events.py,sha256=slHR4XJF9vRuEbuInJKMMAImLF8m7tHWVfGP42fbXr0,26859
|
9
9
|
scout/adapter/mongo/case_group.py,sha256=tG8DuO0rNYepV4k0yCGPqssODErc0HMsAypg3mfhcV0,1575
|
10
10
|
scout/adapter/mongo/ccv.py,sha256=VIz-Yqzm-1UVPDKvZkBllO4BOKXzvKCXcQUjTtZCHTI,4165
|
11
|
-
scout/adapter/mongo/clinvar.py,sha256=
|
11
|
+
scout/adapter/mongo/clinvar.py,sha256=U48oocMB40-JZfajJ3PBmtS5ZUFeMfnhokB4o3iHNTg,22712
|
12
12
|
scout/adapter/mongo/cytoband.py,sha256=2NoIAoQ7RPqcipiSymD2O9qH8lXscP3T5ejquOrD7uQ,2622
|
13
13
|
scout/adapter/mongo/disease_terms.py,sha256=4qcQRLuP5xn_RkB2RlNtwCrONmDuWwdlngZrj87BUEo,5637
|
14
|
-
scout/adapter/mongo/event.py,sha256=
|
14
|
+
scout/adapter/mongo/event.py,sha256=Xoq009ht7sRXkxglvO74n-LVa9gpA96j4yXiEmH6VnI,18684
|
15
15
|
scout/adapter/mongo/filter.py,sha256=rIdjiDJCrNDeTNgssKm7n1HTxne72jvlX2I3FQjQGo8,9687
|
16
|
-
scout/adapter/mongo/hgnc.py,sha256=
|
16
|
+
scout/adapter/mongo/hgnc.py,sha256=S7CFw1DAP-jHGgybw-3H2Dozn5s1rYxnJMHnl8GArKU,16680
|
17
17
|
scout/adapter/mongo/hpo.py,sha256=ps2Pix3sGeea7DenboZVP5j7Vh9WAgX3-sgpbAj0Eck,6871
|
18
18
|
scout/adapter/mongo/index.py,sha256=TZPVv6xBWsEtZpBUWp5uhjuPjQMfVss4lZZju49g1Lw,3577
|
19
19
|
scout/adapter/mongo/institute.py,sha256=SaA1mRxIZHtMfriMnd0yKiup-xSAG5g0ry9Achra9Tk,6646
|
20
20
|
scout/adapter/mongo/managed_variant.py,sha256=mPbp64nMDwAij8zvBbFGjI3MLbk6CC-OO9RTwtEIi44,8451
|
21
21
|
scout/adapter/mongo/matchmaker.py,sha256=amTvFOlUbrt1RmecY_8hPY6bO3j79lc2UbmzlCQcRuk,6378
|
22
|
-
scout/adapter/mongo/omics_variant.py,sha256
|
22
|
+
scout/adapter/mongo/omics_variant.py,sha256=-Z4UCqeybbQQix1fWdOTKa6acuytPM2r8c-6pAv-gRY,8910
|
23
23
|
scout/adapter/mongo/panel.py,sha256=d1oMEYAiDGybLmlbbf3-fQdCdU0-T7x2XdIUwZGthYk,20031
|
24
24
|
scout/adapter/mongo/phenomodel.py,sha256=cypSS8YRzu98Bf1kC0orfrLNn_ZQSYCK8e4mNR5PaPY,2572
|
25
25
|
scout/adapter/mongo/query.py,sha256=zXAT5lWadRbhCNw5w161uCKzoUyTuUSlCm32P8aBa_M,36315
|
@@ -28,7 +28,7 @@ scout/adapter/mongo/transcript.py,sha256=3U1qtyxZ1DnrzdBJm_emJXISMYFKJuX_zAKynUt
|
|
28
28
|
scout/adapter/mongo/user.py,sha256=QoQnRWqi_dV3ZwGzBonEU6Ap9TgMDf2x_C5UIqG0pa0,2569
|
29
29
|
scout/adapter/mongo/variant.py,sha256=IMZcRr43b3XsDqi9kpymobAj_CPVQkN_rxLMfxQ75LI,36267
|
30
30
|
scout/adapter/mongo/variant_events.py,sha256=yNnMM58P1LbYFw73rWzti6l2zWa_G93ozUTbVkcz4_I,33475
|
31
|
-
scout/adapter/mongo/variant_loader.py,sha256=
|
31
|
+
scout/adapter/mongo/variant_loader.py,sha256=GPvqfcL5hmd4fUKbTshwKZHvT_Wx4f_vrJ_lEi4Jjk0,28732
|
32
32
|
scout/build/__init__.py,sha256=GUWEaXTpwsJil_KtrXBQJpZIwCQFSgo8NlK49R9IkA8,521
|
33
33
|
scout/build/acmg.py,sha256=M21MrrP_dtEyOuu6t-jBDdaqYcHPMLcwJlt9fHG2ycE,1523
|
34
34
|
scout/build/case.py,sha256=LtYx6zQcCoGCss48qf7uluzTlXVH0Pl-WhqYzkbIcZ8,11510
|
@@ -50,7 +50,7 @@ scout/build/variant/compound.py,sha256=tYikQ4PmgAH1_yrE9uYaUX4_EoAs_XEiT8JWAjrZu
|
|
50
50
|
scout/build/variant/gene.py,sha256=Fj_ouJtNAZOvxYVo9oVXaYJE5_zx-mJqL-uOARD4ku8,3857
|
51
51
|
scout/build/variant/genotype.py,sha256=QDTZWFB8ix9Zd1m9UPWgT008i6rC7gT-uFzRr9GniDU,1009
|
52
52
|
scout/build/variant/transcript.py,sha256=hf_led1kdT3hVEwtHdORhBSk6a6o_zEDJ0z4ZF8IlFA,1205
|
53
|
-
scout/build/variant/variant.py,sha256=
|
53
|
+
scout/build/variant/variant.py,sha256=Iw9vxWSfyGgD3XtknqAVAmAc87NxpbiHKZvCJS-P8v4,18811
|
54
54
|
scout/commands/__init__.py,sha256=VrenBj1daCAnIsBZtvdbv1SuxmODT_TTY8YcxWItrXE,22
|
55
55
|
scout/commands/base.py,sha256=WmUko96zsPbC3cUIezy0CAOOGKBFU-BoW-BPAhLORCE,4610
|
56
56
|
scout/commands/convert.py,sha256=T5dkFjRKSTf7dBS9uKIW4wEmdL13vKzKTLRy4nvf6Vg,1090
|
@@ -93,7 +93,7 @@ scout/commands/load/region.py,sha256=psICLlMf5WBdSCgXsJZUsM8fICsTJB3Q6U6dB5S6w_8
|
|
93
93
|
scout/commands/load/report.py,sha256=DrnyOJcLbOUUJHzI3jwlj955zYohvjuTeeoeUS_ZU8Q,3564
|
94
94
|
scout/commands/load/research.py,sha256=t5a6kVVPX3aZtDx20VNNXhkAGTB_gCln5Ejjy_JjYGE,4418
|
95
95
|
scout/commands/load/user.py,sha256=eDHt_byU3DVhI9D-3GwEW_VpQbIF6bPEORAieCTcdUc,1412
|
96
|
-
scout/commands/load/variants.py,sha256=
|
96
|
+
scout/commands/load/variants.py,sha256=3hloGZ51MlAc-1OU9gMsKr4KQbwcR5__5fQRVPFCPpk,9957
|
97
97
|
scout/commands/setup/__init__.py,sha256=uiuizwirbfLqp93K4__b982obk1stkzwpvXHi51OAbE,31
|
98
98
|
scout/commands/setup/setup_scout.py,sha256=txS4tRwk1FMlS_qkyJl0XaZU0rFivqVCMqMi7iZtw78,9254
|
99
99
|
scout/commands/update/__init__.py,sha256=yKNjRTVFsSTko8T7znfMqSI_HsGPN2-z1c0twkwO5uE,25
|
@@ -109,7 +109,7 @@ scout/commands/update/omim.py,sha256=s39qterBGhtBfW7Uc-IJabni93PIhT8shqVbkmQBb9k
|
|
109
109
|
scout/commands/update/panel.py,sha256=990shZ15k5pwHUkd767o8oQ5iqVIpgRA7N_9yv1_eqc,2912
|
110
110
|
scout/commands/update/panelapp.py,sha256=lUDuN8iLPwUFFG_iY35L5gDEjrgsE22Eo_xB1Djj1_4,1922
|
111
111
|
scout/commands/update/phenotype_groups.py,sha256=Ll0COlEckn1Z7VAJbFbG2EZ5FKFVEcff0sWiUsx-D-g,1980
|
112
|
-
scout/commands/update/user.py,sha256=
|
112
|
+
scout/commands/update/user.py,sha256=WGilEwo9aVv3_z7ZBJBSoeY7sGhPU7UHcp3rERTcJgk,3681
|
113
113
|
scout/commands/view/__init__.py,sha256=ZtRW7UBNf1rPnlCslBVcmjafOPg9WTPpn4xxlAA0wMo,23
|
114
114
|
scout/commands/view/aliases.py,sha256=M0hTBHk_cyW-BG0cNz5T3q20waYP4ktTfTCzCtkTUs0,1995
|
115
115
|
scout/commands/view/base.py,sha256=Lz2cB7yTPjHXLgDu3aumHm6d4ozAKEA5V5ff1NAT4wA,1000
|
@@ -125,23 +125,23 @@ scout/commands/view/intervals.py,sha256=8Pofxy0DwL2Euh3SdnTLLWsU6DjLNOwIGdxeCS83
|
|
125
125
|
scout/commands/view/panels.py,sha256=a0fQcP9-SDPuRYV7aEgIGUCYaMN6V47h6finpcdoomU,1098
|
126
126
|
scout/commands/view/transcripts.py,sha256=59WyNNp7zHPJIz9QgzrkoeKaSXTtuLli0VuL8IidEmY,1277
|
127
127
|
scout/commands/view/users.py,sha256=MKlmhDYRM7Yf-Trmi1ijEuqsDIUn326bdFADyDs7XYg,832
|
128
|
-
scout/constants/__init__.py,sha256=
|
128
|
+
scout/constants/__init__.py,sha256=yJga2nPS9l0oC89jwE2FXt7zmMC8Fr8AW1rIgwfvaDU,6067
|
129
129
|
scout/constants/acmg.py,sha256=N9X2sJLbK6g6tDPhW0gYQifImzaowb4F6jfTYUBr-Z0,18717
|
130
130
|
scout/constants/case_tags.py,sha256=O-BwEzU36MSpN7qqd-aSvoi4-VDRY8rM5hQ7Jg7DMgs,9447
|
131
131
|
scout/constants/ccv.py,sha256=YP82qWCrjv3JB8d2LkUdBlBZolk0uF3nhNmkNgmebiI,9734
|
132
|
-
scout/constants/clinvar.py,sha256=
|
132
|
+
scout/constants/clinvar.py,sha256=MGGwEaKIsvrG6EU9CYIeFmOuxQnQ-c6haoE9ePUL2z0,5946
|
133
133
|
scout/constants/clnsig.py,sha256=anWIOuj_qLcDl4UsRQ50W6qlv7UaHTUbSdHOkAzL0No,1594
|
134
134
|
scout/constants/disease_parsing.py,sha256=M9_OgsN88oXwKH_XpxdDma0zuWPRoHFQjL19tzojBPo,686
|
135
135
|
scout/constants/file_types.py,sha256=3N3TReXVkhxbpvYupsENVFAHEGQyZ1S7efP7wZEqs44,2890
|
136
136
|
scout/constants/filters.py,sha256=ZgVGt6No5D7PiN1o1wWDm3E5SCRk7YLya87_4QtIMPs,979
|
137
137
|
scout/constants/gene_tags.py,sha256=yBrMu9qXyYaQ13l3XMakooyd2ZtPXm1XgpSSH_bC-5U,4513
|
138
|
-
scout/constants/igv_tracks.py,sha256=
|
138
|
+
scout/constants/igv_tracks.py,sha256=rhCrmPGLVUMcFrLfjswzeO2UeKIsf3dgjgyepKjh3sM,4777
|
139
139
|
scout/constants/indexes.py,sha256=qe-1ntYqlwqLEDqsJDX6RhAnCYt_2tVZ9ZJ4nWoTIkQ,5843
|
140
140
|
scout/constants/panels.py,sha256=1N2Ys94IxoEWxySTJDW-rFJ55vtCkqnn6bRWjkw61J4,876
|
141
|
-
scout/constants/phenotype.py,sha256=
|
141
|
+
scout/constants/phenotype.py,sha256=FqTZJOmBE5vxWU_XPrLi1nkPix5d5WAxLEpjw9Hz4Ak,2381
|
142
142
|
scout/constants/query_terms.py,sha256=tuHYdV0nNKCw4UpypOwUgKImaWFimOyn-evAEGdxz-E,1615
|
143
143
|
scout/constants/so_terms.py,sha256=aJcQv3wgpZylVhqSJH854WS8xSARDxWGnW6I5mG1egE,4321
|
144
|
-
scout/constants/variant_tags.py,sha256=
|
144
|
+
scout/constants/variant_tags.py,sha256=Ku5pPLcnFwmjViScTBR8TSUP9HAfrKAkISZ4xfL2mNg,18821
|
145
145
|
scout/constants/variants_export.py,sha256=uQvFsbRMdbgl39HUdGWzFAEe1KOHp5OgvhjbGMD3O_Q,1969
|
146
146
|
scout/demo/643594.clinical.SV.vcf.gz,sha256=Y5CcTI7vJAS53ch8OHPR80X44rArHZoQeQZGl8AHmq0,11927
|
147
147
|
scout/demo/643594.clinical.SV.vcf.gz.tbi,sha256=1CPB8ftoYF3gjRfqG0xMQlVMD1lY0xSdXp_KrJbfzac,1284
|
@@ -189,7 +189,9 @@ scout/demo/ADM1059A2.d4,sha256=M4ubAb6oVkr8dOkvkROkTr76nACfE4eSWHiUKN5FRLg,61119
|
|
189
189
|
scout/demo/ADM1059A2.test.cgh,sha256=29YOnGgPB3wxWwxVwf_mCLrhZ4Cf5hqVxw_DUggBe7Y,29
|
190
190
|
scout/demo/ADM1059A3.d4,sha256=Da7zycL1LjrzhX1171G1sJTedyOLUyYMc_e5EAhI4eQ,961059
|
191
191
|
scout/demo/ADM1059A3.test.cgh,sha256=29YOnGgPB3wxWwxVwf_mCLrhZ4Cf5hqVxw_DUggBe7Y,29
|
192
|
-
scout/demo/
|
192
|
+
scout/demo/NIST.trgt.stranger.vcf.gz,sha256=st-MDy7qyBbCEulaLcOt04ZpTTnEQBQHH7BpWDjuZhE,9392
|
193
|
+
scout/demo/NIST.trgt.stranger.vcf.gz.tbi,sha256=SUfn5hujVKZHznh2EbulqzKEfSFDC7pjx8J9PitjXOQ,3771
|
194
|
+
scout/demo/__init__.py,sha256=oqrUngZAPCUFWV1OWeFbEewatgFd91HLKjoWPoqcGHM,2137
|
193
195
|
scout/demo/cancer.load_config.yaml,sha256=MWoxppBQo4VHCTj-CzKClHSRWmTJyH1KgDy2-_m8RV4,1385
|
194
196
|
scout/demo/cancer_cnv_report.pdf,sha256=_2_nj7Hc9SdE_mwDBqoquOFTLzZq5URnslADRMFjOm4,1910043
|
195
197
|
scout/demo/cancer_coverage_qc_report.html,sha256=BlE_d6i68fK6VPv1wCyEmJy3qGSU67-in5Y1BGustU8,6914
|
@@ -375,7 +377,7 @@ scout/load/cytoband.py,sha256=vPU8oQm31WMcnaG9QG2le9pe_8g70O1S0q1Ljj3Ce84,1356
|
|
375
377
|
scout/load/disease.py,sha256=eZ-RDTtfO6-YCk0tCHuhCWxw1FSCwHNZEemWXCC4P_w,2747
|
376
378
|
scout/load/exon.py,sha256=ONaWJ9EfbhGV8KGXxwlq_jYCoU-JkBpv4r9zDaCjtls,2070
|
377
379
|
scout/load/hgnc_gene.py,sha256=GcSQ01CioYIshAzXAv4msIGDPjTjGBBPBnLX2GvaZJ4,4507
|
378
|
-
scout/load/hpo.py,sha256=
|
380
|
+
scout/load/hpo.py,sha256=UAUbklr_KIHLutBBW2N3KwInPLFuiufjh8Ke-38m_Pc,2679
|
379
381
|
scout/load/institute.py,sha256=etmZ0CZRHOVi3f9R-wn5BK1pZPhtZwq2QYbh2RXXxDc,625
|
380
382
|
scout/load/panel.py,sha256=MY5M7-lDzVXt5RJH87N28TB7awdM6s-SoawholTl2GM,4776
|
381
383
|
scout/load/panelapp.py,sha256=b37hLLpUNhXPz5SOYnhnRhb1OmSX-z2k7FtKMm9pXE8,5319
|
@@ -388,7 +390,7 @@ scout/log/log.py,sha256=EPtd6Z1HMSvmuDHdElLUcLhPsz36LNQSX09Lg3m1jCY,1549
|
|
388
390
|
scout/models/__init__.py,sha256=xfMJsbQbGB1ZMa5zhS0S_R0udxZ4PX8h24NtnJ2gIt0,117
|
389
391
|
scout/models/acmg_evaluation.py,sha256=Rn8GvbcUjMS1ZjDaPxuxn2cwWuESxeHOadZn4SREyeo,676
|
390
392
|
scout/models/ccv_evaluation.py,sha256=nJlT2THRUbDQgwDuoorOiOkIof-zDa95PyPdubovQBk,691
|
391
|
-
scout/models/clinvar.py,sha256=
|
393
|
+
scout/models/clinvar.py,sha256=HHnTHnJdO054HDNlTQv6EHdzjsnwM0c_Aq6ZznoMo8M,5320
|
392
394
|
scout/models/disease_term.py,sha256=KFrIkoyImhVDf4YAMYyluQZvDE9GNEa533M_4IMeIlQ,803
|
393
395
|
scout/models/event.py,sha256=2v9K7hbSa6bgadolGnGL7OymSibNGRyTZXlnL_SrFTM,1863
|
394
396
|
scout/models/hgnc_map.py,sha256=U2v7ie4BxQUVMXvyQoiAcXitNSrEAm_3F7DUkn10ivw,3975
|
@@ -430,48 +432,48 @@ scout/parse/variant/callers.py,sha256=eA5o4Ov_v5ds__4xpif1ttj5yk2nK4GXwhYSWL4NTD
|
|
430
432
|
scout/parse/variant/clnsig.py,sha256=ubF6ImtxtAtouwESQ-NhoCeE_9uVFT_UWKaE9BRhHgI,6773
|
431
433
|
scout/parse/variant/compound.py,sha256=6M60DrZk8A7-X3ICGEAVpWyjLC_UgXcK1zd_o7Cuemg,1502
|
432
434
|
scout/parse/variant/conservation.py,sha256=8eHXy57g6ng0eMo38LsIcQ8w_H5mpBSfiMuaXF7aBi4,2949
|
433
|
-
scout/parse/variant/coordinates.py,sha256=
|
435
|
+
scout/parse/variant/coordinates.py,sha256=j3pJzH3sZguD7d3J908Jon1NuXBk4FIyL2pjTW57Tdo,4896
|
434
436
|
scout/parse/variant/deleteriousness.py,sha256=zeFzx218GL-5pKniyci7MVHj3a1cep4nmvoSg7u0ogA,541
|
435
437
|
scout/parse/variant/frequency.py,sha256=OaYjFp9zgNJg1OSxIepZHyu3t-N2ZzVbmpkHs45GxcM,7976
|
436
|
-
scout/parse/variant/gene.py,sha256=
|
437
|
-
scout/parse/variant/genotype.py,sha256=
|
438
|
+
scout/parse/variant/gene.py,sha256=MMLvOoQYx-e3mi9vcZv0pqzWQ0bsF7kywmXav_4xwzg,4529
|
439
|
+
scout/parse/variant/genotype.py,sha256=NRUMohsWa2ADh45p7R8iDK5VYTBTrQCzq5C3OrV95D4,17471
|
438
440
|
scout/parse/variant/headers.py,sha256=se3H4r22q30MIvtOyc5jWNXZLVnDx58X4h-eED7hkl4,2947
|
439
441
|
scout/parse/variant/ids.py,sha256=N_2m7Hgdh7asHdWU4k2dMySsutxp16ODRE_OHy_Niwg,2628
|
440
442
|
scout/parse/variant/managed_variant.py,sha256=qwmi2sPLwGZM5izSsMpvhQ9vfMHREiwiIzjDCuOdqQo,2288
|
441
443
|
scout/parse/variant/models.py,sha256=K9i3nSuW2rhEq6Y1fwullXOG7BaIodl0YEDXe2Jwszg,424
|
442
444
|
scout/parse/variant/rank_score.py,sha256=da3LfTovbLyldGiD5sEvJ53jtwU6HrtQh-P7QdGMRwY,393
|
443
445
|
scout/parse/variant/transcript.py,sha256=0kxaXWrNAvSiU76ZdIl9PQFzUyj6go6u3BnNhnTk8pg,13359
|
444
|
-
scout/parse/variant/variant.py,sha256=
|
446
|
+
scout/parse/variant/variant.py,sha256=5sIEZifYf82sDIk9d0tbBWX-K4vRXs17rxYXsCGZCpk,24883
|
445
447
|
scout/resources/__init__.py,sha256=i9UVG651subgmOZ-Gm-JKPsXBqr5-50QUDfSpbwmwIw,443
|
446
448
|
scout/resources/cytoBand_hg19.txt.gz,sha256=pheUD5b9NlVuvwwnbKwDc2FG80Yg70gvPxVXP-Sqd3k,6147
|
447
449
|
scout/resources/cytoBand_hg38.txt.gz,sha256=sqSVmvPlktQ-0hTiTapJM-5UgyV6xDoYZuTF0kPuETs,6105
|
448
450
|
scout/resources/custom_igv_tracks/mane.bb,sha256=flEexDxHmbX7IwwrMM0P5DWOxcSCjmHxGNlyg_WqElQ,3519360
|
449
451
|
scout/server/__init__.py,sha256=iwhKnzeBJLKxpRVjvzwiRE63_zNpIBfaKLITauVph-0,24
|
450
|
-
scout/server/app.py,sha256=
|
452
|
+
scout/server/app.py,sha256=NB3WXI2Xa8Wdfnonkoxb0mWeEV9gYOJhqvYc_h4ajTw,14633
|
451
453
|
scout/server/auto.py,sha256=8B6GwfOaUChkTLuLgYQDFMWlxGuHkEegF1argH2G2Ik,401
|
452
|
-
scout/server/config.py,sha256=
|
454
|
+
scout/server/config.py,sha256=JcT9rUDcAdm9oSk7Wwbu-Aut96-xvBQnMeQTt_-6rXs,6401
|
453
455
|
scout/server/links.py,sha256=aFCvrtXrc1gnhNhnifapVdUZOZKEpBD2zSxWXdvQLEk,28154
|
454
|
-
scout/server/utils.py,sha256=
|
456
|
+
scout/server/utils.py,sha256=gNPPtbIXKenxprg1b240pkEbJZowfY4xjH9lctbpeEs,14584
|
455
457
|
scout/server/blueprints/__init__.py,sha256=iwhKnzeBJLKxpRVjvzwiRE63_zNpIBfaKLITauVph-0,24
|
456
458
|
scout/server/blueprints/alignviewers/__init__.py,sha256=XMVed2ekVUAvroqENDHSr2pwM8otqau8ZA-rbH1T2U8,59
|
457
|
-
scout/server/blueprints/alignviewers/controllers.py,sha256=
|
459
|
+
scout/server/blueprints/alignviewers/controllers.py,sha256=s8fvqOewsR9bSf-tbZFGe1ePvz5zfoMrVvEzZBe6Cmw,15268
|
458
460
|
scout/server/blueprints/alignviewers/partial.py,sha256=9hpI00yhvZZCcPVUHlVDp488r1j7vYU5YDXYA6OkWQM,2005
|
459
461
|
scout/server/blueprints/alignviewers/views.py,sha256=Qa9VOPbqh2MC-L_x1Yp6n8hfr6mIm9EPIUdN_0itJRU,5092
|
460
462
|
scout/server/blueprints/alignviewers/templates/alignviewers/igv_sashimi_viewer.html,sha256=37ArJCraTajqWlCvyQYVfSvWCg94pRDIMvf2Y7Oe_j4,5545
|
461
|
-
scout/server/blueprints/alignviewers/templates/alignviewers/igv_viewer.html,sha256=
|
462
|
-
scout/server/blueprints/alignviewers/templates/alignviewers/utils.html,sha256=
|
463
|
+
scout/server/blueprints/alignviewers/templates/alignviewers/igv_viewer.html,sha256=rm_qcJaySQ3-Ux8Qr5JXlzWGFPAnx24fqa-XMpdcCnI,10988
|
464
|
+
scout/server/blueprints/alignviewers/templates/alignviewers/utils.html,sha256=jaf4fba_RHVRymWxP32wCkR0GSZKD7PS8hYjqO8GVFI,336
|
463
465
|
scout/server/blueprints/api/__init__.py,sha256=HR6HjS7ot1K_8Lt5eQdNT154z_FCdHGSigy8r2LpNCI,26
|
464
466
|
scout/server/blueprints/api/views.py,sha256=pbl78wfhrm1T8JmiJDYF3BbTbfFrlF-hQRbuv2GWI0s,3729
|
465
467
|
scout/server/blueprints/cases/__init__.py,sha256=_c17kPFITFYcIVphF4V9bf0PZBer8bU3rtVWQnljKDU,52
|
466
|
-
scout/server/blueprints/cases/controllers.py,sha256=
|
467
|
-
scout/server/blueprints/cases/views.py,sha256=
|
468
|
+
scout/server/blueprints/cases/controllers.py,sha256=iXL_o8LsBYP3efBBt3_vmNPKzBfWg6Nouimz4QMBMrc,57728
|
469
|
+
scout/server/blueprints/cases/views.py,sha256=qYnmXi5DpmuLEztQ9DgoOMfe-oOaGAe8JCzZ6tvormw,43092
|
468
470
|
scout/server/blueprints/cases/static/case_images.js,sha256=pb_gG7DNQc-1lADqSII8YvjBwmHyeQWYVtuu2jyrTlU,14997
|
469
471
|
scout/server/blueprints/cases/static/case_styles.css,sha256=2Pgc8pFf9DR5HM1sTdAjaRWhjL-bK5bsQnLpH54HZak,541
|
470
472
|
scout/server/blueprints/cases/static/edit_pedigree.js,sha256=ntC5fie7SsOYJau8qkke1UHxjiYWY_gBzWcIkGpdJUA,2978
|
471
473
|
scout/server/blueprints/cases/static/madeline.js,sha256=KHxKMBVlYVJODNu5QkY9hhsGkDJNoaCoCZZ0DRu0YN0,1175
|
472
474
|
scout/server/blueprints/cases/templates/cases/case.html,sha256=6PUQX2BYv5BYxkqZqpa9xVeNDl7MmQVRFLdV-cgWL5I,37522
|
473
475
|
scout/server/blueprints/cases/templates/cases/case_bionano.html,sha256=PLoRv7hDJcHwxhi-0hC9fQSZc7V_aUYHBhhQqcn_2G8,5946
|
474
|
-
scout/server/blueprints/cases/templates/cases/case_report.html,sha256=
|
476
|
+
scout/server/blueprints/cases/templates/cases/case_report.html,sha256=1_4QUmBUv4HoMv-1zbY6JI1MEN2Or9c9Zqu-sQDzzgo,65815
|
475
477
|
scout/server/blueprints/cases/templates/cases/case_sma.html,sha256=99rmRyDXFXjooB52TI5_ebJKv1ZAJbVXEw4deHfSVMA,7285
|
476
478
|
scout/server/blueprints/cases/templates/cases/case_tabular_view.html,sha256=ko-LDUKmIoTazMZ2nFWvPEZsgObU07RwqIkDYFjokoY,4317
|
477
479
|
scout/server/blueprints/cases/templates/cases/chanjo2_form.html,sha256=WwdEfVtreTOruPrUJbasGE2Zmt3FiCSHwNEcJVRmefQ,2203
|
@@ -481,17 +483,21 @@ scout/server/blueprints/cases/templates/cases/gene_panel.html,sha256=nq-hSL__YD5
|
|
481
483
|
scout/server/blueprints/cases/templates/cases/index.html,sha256=y91d7yI64Fbz7wS8CSsi3vcCo6rFmS0mnstUipnVHUQ,1136
|
482
484
|
scout/server/blueprints/cases/templates/cases/individuals_table.html,sha256=KMWlkE-1wJGcCUcv1VigSakwxeXH0qdBGptzLvx8his,11657
|
483
485
|
scout/server/blueprints/cases/templates/cases/institutes_sidebar.html,sha256=u0oPGHJ0ipZ1LkjHkbwlWfkUWc1h6XH1nh3tkbX17z0,4546
|
484
|
-
scout/server/blueprints/cases/templates/cases/matchmaker.html,sha256=
|
485
|
-
scout/server/blueprints/cases/templates/cases/phenotype.html,sha256=
|
486
|
-
scout/server/blueprints/cases/templates/cases/utils.html,sha256=
|
486
|
+
scout/server/blueprints/cases/templates/cases/matchmaker.html,sha256=odKTEVPwSakuW1kn7j_23WkgG6naMw1knpF7DJ8jCpU,13620
|
487
|
+
scout/server/blueprints/cases/templates/cases/phenotype.html,sha256=C0PEB2VKbQ7i3cOtAJn4NZSzRGCHolI2VbWtOjWwk64,16416
|
488
|
+
scout/server/blueprints/cases/templates/cases/utils.html,sha256=Dx-TWaK_B3Ksz8V3DkS4nX6tUUUC7R3LFPekOniFPzk,35487
|
487
489
|
scout/server/blueprints/clinvar/__init__.py,sha256=BV3aH2AbiA2WWrUEMbGd0H9MefFd2eTsRE9ShywbzpI,30
|
488
|
-
scout/server/blueprints/clinvar/controllers.py,sha256=
|
489
|
-
scout/server/blueprints/clinvar/form.py,sha256=
|
490
|
-
scout/server/blueprints/clinvar/views.py,sha256=
|
491
|
-
scout/server/blueprints/clinvar/static/form_style.css,sha256=
|
490
|
+
scout/server/blueprints/clinvar/controllers.py,sha256=hTpGRdwmlDmd3xa-T4cTpfkGFGHrDDAEXcgToVe0juc,32211
|
491
|
+
scout/server/blueprints/clinvar/form.py,sha256=pv9p3do4Z_DIdnIyqwEM8ckCmuHbnYPORqW-ezsyREs,6440
|
492
|
+
scout/server/blueprints/clinvar/views.py,sha256=DfY3ua_sBvpsNvEySQuWNIv5VpICiSqIomAw_fa6A6c,8927
|
493
|
+
scout/server/blueprints/clinvar/static/form_style.css,sha256=b-cDwPKMOIkivOZi3XiLP9xMwPKYCPKaUKB1QdvpEoY,4143
|
492
494
|
scout/server/blueprints/clinvar/templates/clinvar/clinvar_howto.html,sha256=phFsRl6Hv94sy4GueBN0MXYbQsW6qmR1NoH-3Iwt2zs,4852
|
493
|
-
scout/server/blueprints/clinvar/templates/clinvar/
|
494
|
-
scout/server/blueprints/clinvar/templates/clinvar/
|
495
|
+
scout/server/blueprints/clinvar/templates/clinvar/clinvar_onc_submissions.html,sha256=48CzsbN0OZKQCAkxhWX2F7hmOgL-44rl911f99qrRdQ,10474
|
496
|
+
scout/server/blueprints/clinvar/templates/clinvar/clinvar_submissions.html,sha256=ak5QSOXvi_Xt8JnmjIi1pDzU_NXKJiJkbqTVmw_79lI,18773
|
497
|
+
scout/server/blueprints/clinvar/templates/clinvar/components.html,sha256=oO8UBUO6JG5uGad7ejII4mkUaI9BiGi1BQGpG-ETva0,9269
|
498
|
+
scout/server/blueprints/clinvar/templates/clinvar/multistep_add_onc_variant.html,sha256=Sx7mZkxEIpebnGYeZpnpc2fGjKzZ1F-Nid3qJA4FXFM,9809
|
499
|
+
scout/server/blueprints/clinvar/templates/clinvar/multistep_add_variant.html,sha256=tejiVcPVWNgGMKcOcAQaW9MklzslmR0YT9OMQGhDtOU,17386
|
500
|
+
scout/server/blueprints/clinvar/templates/clinvar/scripts.html,sha256=cVApkmHrAGpkgOJzcXB-Ot7T7clhL_F8N3JxrLKJ6uo,6443
|
495
501
|
scout/server/blueprints/dashboard/__init__.py,sha256=9YTjGeFexyEbl4P-gs7j8VEjyhnVwHZFfz57eTtod1M,69
|
496
502
|
scout/server/blueprints/dashboard/controllers.py,sha256=x6EWKROskF4iyZ5_hAgL7CWp1X3CXHp-7v0JVsDHKZU,9612
|
497
503
|
scout/server/blueprints/dashboard/forms.py,sha256=vbdkujKZxVjiZw2inNhysN3yYMPCdMPbqvKV88DamwI,501
|
@@ -499,11 +505,11 @@ scout/server/blueprints/dashboard/views.py,sha256=VjJI44FBfjQMR21AKminmQWmM3QT9V
|
|
499
505
|
scout/server/blueprints/dashboard/static/charts.js,sha256=P7VmITDatAROmBvCxYRd_Bq5dQDb7Ew61DszfwOtjvY,4250
|
500
506
|
scout/server/blueprints/dashboard/templates/dashboard/dashboard_general.html,sha256=8l1ulf4URSerw8TvKE1-W1AXPTTjXiM5F2tFH3O238Q,6218
|
501
507
|
scout/server/blueprints/diagnoses/__init__.py,sha256=sORNuH8TXn63RI7KVRSVrMrPwTzZs9gNMfPxtzUZW-U,27
|
502
|
-
scout/server/blueprints/diagnoses/controllers.py,sha256=
|
503
|
-
scout/server/blueprints/diagnoses/views.py,sha256=
|
508
|
+
scout/server/blueprints/diagnoses/controllers.py,sha256=7wz3By19iZOOcBihP89KsihH-vg0AxPmi0YLcIOOcMc,1642
|
509
|
+
scout/server/blueprints/diagnoses/views.py,sha256=nr8YKcCUnD7xisk32UKkv-RY2wWR8Egl3wKTrITsd3c,1307
|
504
510
|
scout/server/blueprints/diagnoses/static/diagnoses.js,sha256=M1-BqMEBjNi8P7bY5Zf9gJCz5pqCpT3R75MvuFtDqQw,5460
|
505
|
-
scout/server/blueprints/diagnoses/templates/diagnoses/diagnoses.html,sha256=
|
506
|
-
scout/server/blueprints/diagnoses/templates/diagnoses/disease_term.html,sha256=
|
511
|
+
scout/server/blueprints/diagnoses/templates/diagnoses/diagnoses.html,sha256=UcGNLawdN5lTpRDmIC3VDsVfFzs9iNS7B8k5ddS57rc,4428
|
512
|
+
scout/server/blueprints/diagnoses/templates/diagnoses/disease_term.html,sha256=iE-zlD3Khscv1jJey14giYfPN_JignsH_V7eLrVGcwU,1825
|
507
513
|
scout/server/blueprints/genes/__init__.py,sha256=LPHrbmfVhZpLGGdExFbJp_Du1NKCsVOO_eaevpsNLC8,52
|
508
514
|
scout/server/blueprints/genes/controllers.py,sha256=LCuGPQymKxA7sES49z_j2_B3prKmNY-ME0VK892VoPs,3629
|
509
515
|
scout/server/blueprints/genes/views.py,sha256=lFJ7izYu0CbUJo3j5TesrUhIwreZUYw9_dDqd6iG8m4,1512
|
@@ -511,27 +517,27 @@ scout/server/blueprints/genes/templates/genes/gene.html,sha256=a--c-IjzNKN_JW7z9
|
|
511
517
|
scout/server/blueprints/genes/templates/genes/genes.html,sha256=x6jXKijvuEX9GvIedHW4O_BerYXiWEmAdYT0HTiGnhI,1130
|
512
518
|
scout/server/blueprints/genes/templates/genes/layout.html,sha256=cZMLe2cInq24z0sZpPxDm_kEiAe5VQbOR-8XWn6wlvI,1601
|
513
519
|
scout/server/blueprints/institutes/__init__.py,sha256=kGSyYrBC1QaEQBDdoMkMLfaowV7roaV5DowICi_0RSQ,65
|
514
|
-
scout/server/blueprints/institutes/controllers.py,sha256=
|
515
|
-
scout/server/blueprints/institutes/forms.py,sha256=
|
516
|
-
scout/server/blueprints/institutes/views.py,sha256=
|
520
|
+
scout/server/blueprints/institutes/controllers.py,sha256=nYAkZ2SRBQsXYm-rfMkfyxBTWGSrpsgnvGdZ9Qqsqk0,37115
|
521
|
+
scout/server/blueprints/institutes/forms.py,sha256=1xz_p51YIlWv-VhkCD3WS0K1z1S1oPYuWNaUNAQOchk,6858
|
522
|
+
scout/server/blueprints/institutes/views.py,sha256=LG-uTAEUxbkHvvk0YDeDak2v366lAhmFjsyGYbZGI48,9354
|
517
523
|
scout/server/blueprints/institutes/static/form_scripts.js,sha256=8Sn7omeXeeUbiXJPfT0Qb4CaBJ_KtZZWw7N2he7EDx0,747
|
518
524
|
scout/server/blueprints/institutes/static/select2_darktheme.css,sha256=Nq_va597W_e5y-52B4ClwSJzACq0WFbPU8SIp3DtKIo,1818
|
519
525
|
scout/server/blueprints/institutes/static/timeline_styles.css,sha256=Vq48ffIidpQmDQhAzfW47O9mGQZEWdlbMtOE8AK-ZEU,2122
|
520
526
|
scout/server/blueprints/institutes/static/variants_list_scripts.js,sha256=R4rqoCXzVs9RLqXLK851n0mFgN4xytHxSCaRm0egk5M,377
|
521
|
-
scout/server/blueprints/institutes/templates/overview/cases.html,sha256=
|
527
|
+
scout/server/blueprints/institutes/templates/overview/cases.html,sha256=ifLLs8TGZmJcfMlzo8Gc3WyW1DtyUlmiFzr212jaTKg,12965
|
522
528
|
scout/server/blueprints/institutes/templates/overview/causatives.html,sha256=192pgqUSXQF4qhC933qsYtTwvmlqDctxwHcArERkHc8,1619
|
523
529
|
scout/server/blueprints/institutes/templates/overview/filters.html,sha256=SXvimbFNKfhoh8lpSfnMCTLMb4QghZRxT6W5PteGj68,3519
|
524
|
-
scout/server/blueprints/institutes/templates/overview/gene_variants.html,sha256=
|
530
|
+
scout/server/blueprints/institutes/templates/overview/gene_variants.html,sha256=2D9KUxcB5Ez0iJjNDtzbEP01g4iYNKG9MkaMWsdBlak,8853
|
525
531
|
scout/server/blueprints/institutes/templates/overview/institute_settings.html,sha256=u4myXSYSo2BY0uXpNs715_HiDvsziMFUl4m6kK9Awuc,5168
|
526
|
-
scout/server/blueprints/institutes/templates/overview/institute_sidebar.html,sha256=
|
532
|
+
scout/server/blueprints/institutes/templates/overview/institute_sidebar.html,sha256=cBr3xfns7BO4Gn-YGyDc-wG3hHB-mC-lfbMYu7nFcxQ,5800
|
527
533
|
scout/server/blueprints/institutes/templates/overview/timeline.html,sha256=upTv7v4sUwxGfJDSyk8F5zPb61dedG66zgfvh_SMR4M,2289
|
528
534
|
scout/server/blueprints/institutes/templates/overview/users.html,sha256=6dkbDBNLw2b97M2Pd8JImpPoT3FLTcl84oBN3inLJRg,1134
|
529
|
-
scout/server/blueprints/institutes/templates/overview/utils.html,sha256=
|
535
|
+
scout/server/blueprints/institutes/templates/overview/utils.html,sha256=H3W65bXkBMpsB2EIc2zdm9e-NGsE10XvJh87rrh20Ro,34346
|
530
536
|
scout/server/blueprints/institutes/templates/overview/verified.html,sha256=qxZ8mIPX00ZXIy_5eLO2QmLrjJZrhw97kdXBZxpRj38,3363
|
531
537
|
scout/server/blueprints/login/__init__.py,sha256=uDzQjNNrMloZ4-i-1cEW7d59FZ--Xy89b-Xn5SvyC1U,52
|
532
|
-
scout/server/blueprints/login/controllers.py,sha256=
|
538
|
+
scout/server/blueprints/login/controllers.py,sha256=Ro6-viLD8f8HYpWotb_2aoKK9O6osYlSH79hiEfeXOE,5722
|
533
539
|
scout/server/blueprints/login/models.py,sha256=w0ELh33rX1zwEnzZE-nhaoB6Z1JfgWxzWJ43JFJJo4s,688
|
534
|
-
scout/server/blueprints/login/views.py,sha256=
|
540
|
+
scout/server/blueprints/login/views.py,sha256=xyNWwLe3cOp25LniSHttgccUwLhAshnWHpSTudLoluo,3486
|
535
541
|
scout/server/blueprints/login/static/aspirant.svg,sha256=qMXSX7WzHCDrqcnn6_U_mpQolZc3LVChPsRISGVRO00,270226
|
536
542
|
scout/server/blueprints/login/static/commander.svg,sha256=qXfFTyAE0myoOxJ8d1xb138APPllUOYxXE1Dp66Bz0o,195476
|
537
543
|
scout/server/blueprints/login/static/commissioner.svg,sha256=kAMMtiUauuKKKwYYVhjI8BOjiFoVLZWtj3zcmdwbVzg,415421
|
@@ -549,11 +555,11 @@ scout/server/blueprints/managed_variants/templates/managed_variants/managed_vari
|
|
549
555
|
scout/server/blueprints/mme/__init__.py,sha256=ArTZ_rYGtSHMyvA_3O2M8J0waSIzNwCdN556Wl_Uyzo,26
|
550
556
|
scout/server/blueprints/mme/controllers.py,sha256=t3uQHT4JQrXD9dg_a41MEp6NXBXqF69ZbzlNVsxMaMo,677
|
551
557
|
scout/server/blueprints/mme/views.py,sha256=JIEVxjM2lf9duXJh7TW3nLaXRyhfqggNMrq5VxDFq6g,834
|
552
|
-
scout/server/blueprints/mme/templates/mme/mme_submissions.html,sha256=
|
558
|
+
scout/server/blueprints/mme/templates/mme/mme_submissions.html,sha256=VjahYVVpvyYKStbRmnvlGoHBG4k7W04hYytgTrITsCA,4707
|
553
559
|
scout/server/blueprints/omics_variants/__init__.py,sha256=8UVXrChArhIvMxtgUcG-udvmlTn56q41iy-naOZw5us,37
|
554
560
|
scout/server/blueprints/omics_variants/controllers.py,sha256=AnM70stvLniJIU3pFUX-InNjuT-7K0RpuAEYa7vM-jw,3912
|
555
|
-
scout/server/blueprints/omics_variants/views.py,sha256=
|
556
|
-
scout/server/blueprints/omics_variants/templates/omics_variants/outliers.html,sha256=
|
561
|
+
scout/server/blueprints/omics_variants/views.py,sha256=OnLP4-aOna3bKqa8LB8LwFMl4fLvGWo5STAQSXKI7nM,3714
|
562
|
+
scout/server/blueprints/omics_variants/templates/omics_variants/outliers.html,sha256=tf46LDyQbxM8vshTs-MkZiMc0ClV-9LDUVRAtxNv5o4,14005
|
557
563
|
scout/server/blueprints/panels/__init__.py,sha256=usxBF0O7zNX1d9jt-8DRoFZwcfHHS96Gv87LDr1AgG4,53
|
558
564
|
scout/server/blueprints/panels/controllers.py,sha256=_LXiayDyGcyRQ3Hw13fD8zVYFQ1jIIXUMQ49WsimrZ8,12618
|
559
565
|
scout/server/blueprints/panels/forms.py,sha256=DYlhYpnpv7ehf9JlY3HRFwy-TZ5QDHB0RIRaNTAW1jQ,696
|
@@ -570,9 +576,9 @@ scout/server/blueprints/phenomodels/views.py,sha256=5RI5Df56C8HkcXi5wVpgEdxp7cf5
|
|
570
576
|
scout/server/blueprints/phenomodels/templates/phenomodel.html,sha256=Qd1lNZJIyhZG2K8iVO7UvW8HH3Z-tbMC9Up1Ovlw-MY,18008
|
571
577
|
scout/server/blueprints/phenomodels/templates/phenomodels.html,sha256=nUgJIM-HCO3JdfzhWUIal7-w_Ilcn05XqDtC-gi-ynE,7481
|
572
578
|
scout/server/blueprints/phenotypes/__init__.py,sha256=U62KsB1aI_b98M9-Ahy1HfxtPNFYOLUS29c5OVqhRN8,50
|
573
|
-
scout/server/blueprints/phenotypes/controllers.py,sha256=
|
579
|
+
scout/server/blueprints/phenotypes/controllers.py,sha256=WJJdE6ZcfCXkkf8h-8bC5eMTsaTkBcq3nrAa7rAFQ5c,1254
|
574
580
|
scout/server/blueprints/phenotypes/views.py,sha256=mote8mMsOHSkrXTt5r7rw0DH-RLW2HBt252o8AG8MxI,1853
|
575
|
-
scout/server/blueprints/phenotypes/templates/phenotypes/hpo_terms.html,sha256=
|
581
|
+
scout/server/blueprints/phenotypes/templates/phenotypes/hpo_terms.html,sha256=msYJjyEp3Q3PYo1A0zPuirawSFAzpcARdbPV1lVeA98,2308
|
576
582
|
scout/server/blueprints/public/__init__.py,sha256=M26IYmBXK-dnMmd3Uc2ZuVpjD_xdKKyYNzz0IXFueKo,53
|
577
583
|
scout/server/blueprints/public/views.py,sha256=HSwatmBQB6fA90Mt6Lpv9NNVLSQpPz4NxWyjx4IpyqM,973
|
578
584
|
scout/server/blueprints/public/static/GMS-logo-dark.png,sha256=NC5uv6QeLaEKCrXHmGywukREM_GsO6jb4aEIN77UYEc,76765
|
@@ -611,46 +617,46 @@ scout/server/blueprints/public/static/ideograms/chromosome-X.png,sha256=Dj7npcW_
|
|
611
617
|
scout/server/blueprints/public/static/ideograms/chromosome-Y.png,sha256=KlOsBLZYFVHRvXvTioT-XE57zSWoYeIwIEXo_rzLBR0,1524
|
612
618
|
scout/server/blueprints/public/templates/public/index.html,sha256=o_1UIHGHLBVahVT3MkYo2M7Vfh6tcUnbCXxh2QZ3MiI,4485
|
613
619
|
scout/server/blueprints/variant/__init__.py,sha256=SlD8-Aoj9Jq9aVTJjtFfsu-0sUVfkzpiEXcH8z9q6dI,54
|
614
|
-
scout/server/blueprints/variant/controllers.py,sha256=
|
615
|
-
scout/server/blueprints/variant/utils.py,sha256=
|
620
|
+
scout/server/blueprints/variant/controllers.py,sha256=wP0WqnEhbgUsvW7pZe2wSpPy-V7dCZlqEP2bqm0diAs,30970
|
621
|
+
scout/server/blueprints/variant/utils.py,sha256=xx0I0XxBQTMT28AhZXtZJIjF75Iyk10kXOq25jyribE,25932
|
616
622
|
scout/server/blueprints/variant/verification_controllers.py,sha256=eKzP222e7xuFOaQaI9MLOrD9RWtI8uGB1cJYbcXLzF0,10972
|
617
623
|
scout/server/blueprints/variant/views.py,sha256=MKKCDAfmX_Vggyuw60gIL8NftCDvis9XnkCedK-ZUuE,19510
|
618
624
|
scout/server/blueprints/variant/templates/variant/acmg.html,sha256=MFUuK-JEksjeefByzhwDZvbzss-VHrlXZkPGvsSDrXM,9470
|
619
625
|
scout/server/blueprints/variant/templates/variant/buttons.html,sha256=4vlnvJKhr28qqzevlecAIvumvOgLZhGyPYQm68AnKzU,7608
|
620
|
-
scout/server/blueprints/variant/templates/variant/cancer-variant.html,sha256=
|
626
|
+
scout/server/blueprints/variant/templates/variant/cancer-variant.html,sha256=moeQ2I-gIGG1ecG-7Aa2f9EdA_uLYu-pUkEwLfpr0O4,14876
|
621
627
|
scout/server/blueprints/variant/templates/variant/ccv.html,sha256=X33qKY1EvzoLldko1hK5tgE__xxNU54vq6fRzFew6Vc,8671
|
622
|
-
scout/server/blueprints/variant/templates/variant/components.html,sha256=
|
628
|
+
scout/server/blueprints/variant/templates/variant/components.html,sha256=qqzxAJGmwP7DFdu91j2LSAXiBSuIWRmdB7Q6BiHWabE,28497
|
623
629
|
scout/server/blueprints/variant/templates/variant/gene_disease_relations.html,sha256=1U77akxqbb4AS2GSyvFwGD6D7rP68L3KXKLUmP73664,7256
|
624
630
|
scout/server/blueprints/variant/templates/variant/rank_score_results.html,sha256=32RfBrpZ_J-1WYE01Bdd5IC9i1MAzXT7GF27OlElk94,2040
|
625
631
|
scout/server/blueprints/variant/templates/variant/sanger.html,sha256=0kVnscTw3KUwjR4QOEuNJMOK9eADGEn9qGNtGx2ST7Y,4507
|
626
632
|
scout/server/blueprints/variant/templates/variant/str-variant-reviewer.html,sha256=p0nWqo71GJ8ACLEzXuZbJAzDXoCHZLvH6f7yLi3JslI,2208
|
627
|
-
scout/server/blueprints/variant/templates/variant/sv-variant.html,sha256=
|
633
|
+
scout/server/blueprints/variant/templates/variant/sv-variant.html,sha256=IDg44nyjtdlzJ5S3-_Ba8lyGKYwszz-0mYhy8MsQ-mE,16891
|
628
634
|
scout/server/blueprints/variant/templates/variant/tx_overview.html,sha256=EXLBDh_SgNVEO7MPMjlmfO6MDhtDcj0JyvZdRgxbwSM,6756
|
629
|
-
scout/server/blueprints/variant/templates/variant/utils.html,sha256=
|
630
|
-
scout/server/blueprints/variant/templates/variant/variant.html,sha256=
|
631
|
-
scout/server/blueprints/variant/templates/variant/variant_details.html,sha256=
|
635
|
+
scout/server/blueprints/variant/templates/variant/utils.html,sha256=Chek9j4v8R7sjN80G7p6ZMUbV22kQXLGYhSj2lDFLrg,26050
|
636
|
+
scout/server/blueprints/variant/templates/variant/variant.html,sha256=Pn4OSSgXjbsLXUbEKOqKKhyNsny4Ay-hoBFY1xDZ-dw,20741
|
637
|
+
scout/server/blueprints/variant/templates/variant/variant_details.html,sha256=Qth4sLDPBxvYYJtnnW0PDetsThxlQo5kg-HD_tj1sTs,21940
|
632
638
|
scout/server/blueprints/variants/__init__.py,sha256=W1KCz9kEbVlNO0o3NvLitYLQoP_3JSJ5KSjhpcjlUBQ,55
|
633
|
-
scout/server/blueprints/variants/controllers.py,sha256=
|
639
|
+
scout/server/blueprints/variants/controllers.py,sha256=NbRM4tVrWsLLOVH-Jun80K0ZwJ9MObCJtQjnBXE2hjM,74730
|
634
640
|
scout/server/blueprints/variants/forms.py,sha256=X4lw2UhSAAkaAMgpBK5yz8B8RvcirjjgjOyctN8g1xw,12599
|
635
641
|
scout/server/blueprints/variants/utils.py,sha256=ifFBoyigx0A5KPE4iz9NSpyuUeF1bElrb4ohQLD2GlU,919
|
636
|
-
scout/server/blueprints/variants/views.py,sha256=
|
642
|
+
scout/server/blueprints/variants/views.py,sha256=kBzO4uyI4EjaSEt5YKEkOOouwJQqTuRPatdkSFu5jkA,28472
|
637
643
|
scout/server/blueprints/variants/static/form_scripts.js,sha256=o3GCboaesA9Sm1HgejS_yQwt0I-NTkvcl56jiBdLqZs,8319
|
638
644
|
scout/server/blueprints/variants/templates/variants/cancer-sv-variants.html,sha256=QlGmUEdUQ7gCq7tMMUFAlGqqC9jFB78Q0h6tSp3QUas,7271
|
639
|
-
scout/server/blueprints/variants/templates/variants/cancer-variants.html,sha256=
|
645
|
+
scout/server/blueprints/variants/templates/variants/cancer-variants.html,sha256=Czn1sp5hCsRZ_UoVuqU-lROeD4Ph1rhzAeG7sAA-ltM,9795
|
640
646
|
scout/server/blueprints/variants/templates/variants/components.html,sha256=Oa3MU0DokDDeTx8eD_EQXop5UmjTFHv7SdZUlpCBl04,19150
|
641
647
|
scout/server/blueprints/variants/templates/variants/fusion-variants.html,sha256=XGaLgWobzeFHwyQLXr_Yq9THssf8tGU91VbFKdGOFBg,4801
|
642
648
|
scout/server/blueprints/variants/templates/variants/indicators.html,sha256=5IPiNgEB_JmYpvD6_Mpx9wd1gmKpsVnTm-HKfuBsKXg,5081
|
643
649
|
scout/server/blueprints/variants/templates/variants/mei-variants.html,sha256=E5nkN7I5PtfizYKf3wuhm0xLf4rdgvDmC6EI2x1WQZA,6093
|
644
|
-
scout/server/blueprints/variants/templates/variants/str-variants.html,sha256=
|
645
|
-
scout/server/blueprints/variants/templates/variants/sv-variants.html,sha256
|
646
|
-
scout/server/blueprints/variants/templates/variants/utils.html,sha256=
|
647
|
-
scout/server/blueprints/variants/templates/variants/variants.html,sha256=
|
650
|
+
scout/server/blueprints/variants/templates/variants/str-variants.html,sha256=Hkn6gO0Cjc8APkdNAMfya87yIecqtEzeftIP6WjDP2g,11210
|
651
|
+
scout/server/blueprints/variants/templates/variants/sv-variants.html,sha256=7SZEkk4wjNOmgLdBcRKnNC8jdiLgPDsKey5CsQR1x8A,6794
|
652
|
+
scout/server/blueprints/variants/templates/variants/utils.html,sha256=tAggwsNLqPp2YW8XH5Q7HkBTiGbYB_NmptmbYIfE4xs,53129
|
653
|
+
scout/server/blueprints/variants/templates/variants/variants.html,sha256=eRbO7vnbH2Ainv7Lq9VFnLaijLwFSTX_XiHDyhtDEYo,8541
|
648
654
|
scout/server/extensions/__init__.py,sha256=s6qkGSFNRi_tP7yoeoXB5UarvLHidaK1Yw2Pae7Py90,1366
|
649
|
-
scout/server/extensions/beacon_extension.py,sha256=
|
655
|
+
scout/server/extensions/beacon_extension.py,sha256=aFILa3hdjg3uQATwY2daHMW_iTPHLybRlZL-fBkpMxI,9963
|
650
656
|
scout/server/extensions/bionano_extension.py,sha256=Ov645TQgRusDapqqw82XK1QkTR_pI76-jcQRR2qKnmA,7097
|
651
657
|
scout/server/extensions/chanjo2_extension.py,sha256=AQe5mwN2UrgFYGEq9YtTQddaHCeM2oomUX_sqnH2Sk8,4618
|
652
658
|
scout/server/extensions/chanjo_extension.py,sha256=ZjAInFDLsNG32PDeY8GR3ick12_VKWdTpwaV74gr6EA,4041
|
653
|
-
scout/server/extensions/clinvar_extension.py,sha256=
|
659
|
+
scout/server/extensions/clinvar_extension.py,sha256=c-SXg2c6y5Plq5XM8AC7SJx96_I3TxfoxEwMKhEQnSw,6336
|
654
660
|
scout/server/extensions/gens_extension.py,sha256=KOF-pP4DiRVQkygthAq6XCHnZwAGHo1kjIxmvW7ItYI,1003
|
655
661
|
scout/server/extensions/ldap_extension.py,sha256=nVgJ6YhSyvpg8J4bSYzJwoEvKhP0faWazt3Xk0ixE2U,2746
|
656
662
|
scout/server/extensions/loqus_extension.py,sha256=uiqUXQ7Q7DCj6C20TKgL8yLu9DXov95vrJfhq0tvbTM,12602
|
@@ -664,8 +670,8 @@ scout/server/static/custom_images.js,sha256=7GLudzi3518kWkHuSJGbiqkiU1WV3HofXI46
|
|
664
670
|
scout/server/static/favicon.ico,sha256=8aC2QonalUW-D62draMeiII4sZYQSp9BLGQnj-wRlt0,1469
|
665
671
|
scout/server/static/humans.txt,sha256=UdqAR07_5LAWWfgH2Ty4RR8BhoHS1WXpx9euKtXqqhs,259
|
666
672
|
scout/server/static/robots.txt,sha256=fFX0beQN4x3mzR3evnZjrOUYOTNkezYAwqMowTUpmxM,106
|
667
|
-
scout/server/templates/bootstrap_global.html,sha256=
|
668
|
-
scout/server/templates/layout.html,sha256=
|
673
|
+
scout/server/templates/bootstrap_global.html,sha256=6JrQGCdrSM17VJhcUTPBMSEHRkaOAo1w8Hcsvg6uhRE,2897
|
674
|
+
scout/server/templates/layout.html,sha256=qsi-Zx56xYC4VU2TpfrgSW2sinZHcOaQcYRrALA7Qrs,5127
|
669
675
|
scout/server/templates/report_base.html,sha256=bNYzoJFgtYMnfxQYeguwQK9c15ZASdmXd72DaiCfZto,2281
|
670
676
|
scout/server/templates/utils.html,sha256=0FpSmFLBAOTApGntcIW9YKhqXn6ABDt51aOidx3QtYM,12818
|
671
677
|
scout/server/translations/sv/LC_MESSAGES/messages.mo,sha256=eI53pCtlYj1MXduDicMZRxBhgOV_TlmMUpH7IhncgDY,4452
|
@@ -689,8 +695,8 @@ scout/utils/link.py,sha256=HpQvwu0hmuCrs7TcAExLmOzEGr3glWuu8iaW0ao5pEA,9011
|
|
689
695
|
scout/utils/md5.py,sha256=KkgdxOf7xbF9AF40ZjQKCgWaxFWJ9tp9RKjd8SU6IoA,649
|
690
696
|
scout/utils/scout_requests.py,sha256=6R8boknrfwlmrRQ2txD81lfVtqUK_iabywEiVyIiZfQ,12685
|
691
697
|
scout/utils/track_resources.py,sha256=eUjSEe-Ff8BIb4BHPC_COkJocQO2PaWueiPz1GAuiwY,2614
|
692
|
-
scout_browser-4.
|
693
|
-
scout_browser-4.
|
694
|
-
scout_browser-4.
|
695
|
-
scout_browser-4.
|
696
|
-
scout_browser-4.
|
698
|
+
scout_browser-4.103.0.dist-info/METADATA,sha256=zEWBr5oisQACc7MxeVxLmS10uvRZd_KI9mS46lsiJe0,15527
|
699
|
+
scout_browser-4.103.0.dist-info/WHEEL,sha256=qtCwoSJWgHk21S1Kb4ihdzI2rlJ1ZKaIurTj_ngOhyQ,87
|
700
|
+
scout_browser-4.103.0.dist-info/entry_points.txt,sha256=q_mxFwbMFTwXRDDIRVcqKram2ubMVmvs3CSNvZri1nY,45
|
701
|
+
scout_browser-4.103.0.dist-info/licenses/LICENSE,sha256=TM1Y9Cqbwk55JVfxD-_bpGLtZQAeN9RovQlqHK6eOTY,1485
|
702
|
+
scout_browser-4.103.0.dist-info/RECORD,,
|
File without changes
|
File without changes
|
File without changes
|