sclab 0.3.1__py3-none-any.whl → 0.3.2__py3-none-any.whl

sclab/__init__.py

@@ -6,4 +6,4 @@ __all__ = [
     "SCLabDashboard",
 ]
 
-__version__ = "0.3.1"
+__version__ = "0.3.2"

sclab/_sclab.py

@@ -1,7 +1,6 @@
 import inspect
 from io import BytesIO
 from pathlib import Path
-import tempfile
 
 from anndata import AnnData
 from IPython.display import display
@@ -238,6 +237,8 @@ class DataLoader(VBox):
         self.adata = adata
 
     def on_upload(self, *args, **kwargs):
+        import tempfile
+
         from .scanpy.readwrite import read_10x_h5, read_h5ad
 
         files = self.upload.value

sclab/dataset/processor/_results_panel.py

@@ -1,14 +1,24 @@
-from ipywidgets import GridBox, Layout, Stack, ToggleButtons, link
+from ipywidgets import Box, Dropdown, Layout, Stack, VBox, link
 
 from sclab.event import EventBroker, EventClient
 
+# Create a layout with a bottom border to act as the horizontal line
+hr_layout = Layout(
+    border="1px solid black",  # 1px width, solid style, black color
+    margin="10px 0",  # Add margin for spacing above and below
+    width="100%",  # Extend the line across the full width
+)
+
+# Create a Box widget with the styled layout
+hr = Box(layout=hr_layout)
+
 
 class _Results:
     namespace: str
 
 
-class ResultsPanel(GridBox, EventClient):
-    available_results: ToggleButtons
+class ResultsPanel(VBox, EventClient):
+    available_results: Dropdown
     results_stack: Stack
 
     events: list[str] = [
@@ -22,7 +32,7 @@ class ResultsPanel(GridBox, EventClient):
     ):
         EventClient.__init__(self, broker)
 
-        self.available_results = ToggleButtons(options={})
+        self.available_results = Dropdown(options={}, description="Category")
         self.results_stack = Stack([])
 
         link(
@@ -30,15 +40,19 @@ class ResultsPanel(GridBox, EventClient):
             (self.results_stack, "selected_index"),
         )
 
-        GridBox.__init__(
+        VBox.__init__(
             self,
-            [self.available_results, self.results_stack],
-            layout=Layout(
-                width="100%",
-                grid_template_columns="150px auto",
-                grid_template_areas=""" "available-results selected-results_stack" """,
-                border="0px solid black",
-            ),
+            [
+                self.available_results,
+                hr,
+                self.results_stack,
+            ],
+            # layout=Layout(
+            #     width="100%",
+            #     grid_template_columns="150px auto",
+            #     grid_template_areas=""" "available-results selected-results_stack" """,
+            #     border="0px solid black",
+            # ),
         )
 
     def add_result(self, results: _Results):

sclab/examples/processor_steps/_differential_expression.py

@@ -25,7 +25,7 @@ class DifferentialExpressionResults(VBox):
 
     def __init__(self, dataset: SCLabDataset):
         self.dataset = dataset
-        self.result_selector = Dropdown()
+        self.result_selector = Dropdown(description="Analysis Name")
         self.group_selector = ToggleButtons()
         self.table_output = Output()
 
@@ -198,6 +198,7 @@ class DifferentialExpression(ProcessorStepBase):
             reference=reference,
             layer=layer,
             key_added=key_added,
+            pts=True,
         )
 
         self.results.sync_results_list(focus_result=key_added)

{sclab-0.3.1.dist-info → sclab-0.3.2.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: sclab
-Version: 0.3.1
+Version: 0.3.2
 Summary: sclab
 Author-email: Argenis Arriojas <ArriojasMaldonado001@umb.edu>
 Requires-Python: >=3.10,<3.13

{sclab-0.3.1.dist-info → sclab-0.3.2.dist-info}/RECORD

@@ -1,7 +1,7 @@
-sclab/__init__.py,sha256=8CMvbWDJrjAoC3ycfq28IKCXtE7xhAm_iORs4Jj6yi8,132
+sclab/__init__.py,sha256=3ni3MpADkty43xRMRFsxvB_jIrmOjxyMKFGhHsYx8Ho,132
 sclab/_io.py,sha256=5ISxIPbE233UiOt3QEs9fkLO8DLLEe5HrMnZoR-KLYE,2662
 sclab/_methods_registry.py,sha256=RcffyRuuLzHqsnAdbBL4W1GmZx80d9AxdGjUnx1mbNg,1704
-sclab/_sclab.py,sha256=P7rR82jPPNRp4K9s_GBK0Qcd3xYt7Qc4Zsd-rxiVAK8,9133
+sclab/_sclab.py,sha256=m9y2EgDxFO5JHZAZIK1098bHdrZxaeWfBZNyGQkFCdA,9143
 sclab/dataset/__init__.py,sha256=f9PoXIMAPnC3Var1ODr3mXkotW6u6NRPQvlgcWYXk54,143
 sclab/dataset/_dataset.py,sha256=wsbWnBHnlGJ779RV1Vv7RfxlEzHCfUZKNT3FTI1mu9g,14248
 sclab/dataset/_exceptions.py,sha256=g8RJL8PiRmD4--PkOs5CZth_qeaduvieMlKJNkrUIYA,45
@@ -11,7 +11,7 @@ sclab/dataset/plotter/_plotter.py,sha256=EXwk6KSM7FOyLLJ8HCgIB_2m730t0kHsVKWfQOx
 sclab/dataset/plotter/_utils.py,sha256=ANm_R9PJd33-QJtZzqXCN5pJ_XrJ7AA4AvSHaDRbOMA,11595
 sclab/dataset/processor/__init__.py,sha256=v8Qbusb6h8oSndv9q-12vzHrz5BDF3N2LCkQG9KC19I,104
 sclab/dataset/processor/_processor.py,sha256=ink2eqi7hMt4DunHD4U1KqkKNQd23yJiDOgsmgZTsb8,41684
-sclab/dataset/processor/_results_panel.py,sha256=p2xmHgoYfpkPXj-SjRGTmAPAwL1VC8I70iFD_o-90AE,2342
+sclab/dataset/processor/_results_panel.py,sha256=fUxACVLCeoo5Y1EnRG7KaGFK7P2_kM_iLVGe_zzrEwQ,2782
 sclab/dataset/processor/step/__init__.py,sha256=j8j4oU9NMdWHn6kVjft7Klm6xme8M6wzebxJj_zNehg,179
 sclab/dataset/processor/step/_basic_processor_step.py,sha256=7NKC4W-I_EU3QBPi5BL9-NwAF_h6_oWl1l_kEk6gSAg,3640
 sclab/dataset/processor/step/_processor_step_base.py,sha256=DpbL4F53W1YPI_xHuQ0T3gcvDGwwKG2Xp-n8DkMUf90,4133
@@ -22,7 +22,7 @@ sclab/event/_utils.py,sha256=LehiFhn7dopNEaTFERJhs6fiVgXCBvseRxWTSWc6u-k,456
 sclab/examples/__init__.py,sha256=uSu4DMfF2K7xlZbLC_CmANyS3D56khGLMSVt6x9XXiI,68
 sclab/examples/processor_steps/__init__.py,sha256=_b9nLeZhyVex17lk8Vvy44eXbvKhygrPOZXpaM1jfSo,575
 sclab/examples/processor_steps/_cluster.py,sha256=olbri3HWPBU8p__r9kP9tgWaJoUJ2bK48pmHfdvf11c,1120
-sclab/examples/processor_steps/_differential_expression.py,sha256=uEToPiACCgo42oZidAw5DFgWVcDnChWzVRlVzn53K34,11567
+sclab/examples/processor_steps/_differential_expression.py,sha256=bIR334XDWWkfL7EHgysFsx6PCwdvMuh23J-jnUuptJA,11617
 sclab/examples/processor_steps/_doublet_detection.py,sha256=eFQtRsdvBWJ_v3HH08v-KbjYius-fj1pg1HBm0mjADg,2114
 sclab/examples/processor_steps/_gene_expression.py,sha256=io_U53TQ3bpclGZ7xjuQHws4Lei5_nMpWTKbvD2zqs0,4216
 sclab/examples/processor_steps/_integration.py,sha256=40nIM19VnBALMQXYO9XpYczH7gEcpIUb-DLdYraxzxs,3444
@@ -76,7 +76,7 @@ sclab/tools/labeling/__init__.py,sha256=o-FJWonGNr2h_pB0o3YfnGl_y1kKU06_rYLmTt8k
 sclab/tools/labeling/sctype.py,sha256=jCsCFnqUgb_s1nTSK-N_5pEL_ZvZw-zUo12fUy9RLfs,8164
 sclab/utils/__init__.py,sha256=Py3dPN9ptMs6D-f7IGYisoxOS2YuX0O1oyw75nci3Os,72
 sclab/utils/_write_excel.py,sha256=DBZg9Kx7Ex6VqFrZFDZbSgvzMtu84iEwKo4nI3I2AT0,17017
-sclab-0.3.1.dist-info/licenses/LICENSE,sha256=LO7qldZoHIo9hc-HMBqclBh5800kZ9US9xTbLAQdHpg,1523
-sclab-0.3.1.dist-info/WHEEL,sha256=G2gURzTEtmeR8nrdXUJfNiB3VYVxigPQ-bEQujpNiNs,82
-sclab-0.3.1.dist-info/METADATA,sha256=ZFKIgYqmj_ukAhQlAntHDbhap1-kd3k_fy59FwXHgoE,4437
-sclab-0.3.1.dist-info/RECORD,,
+sclab-0.3.2.dist-info/licenses/LICENSE,sha256=LO7qldZoHIo9hc-HMBqclBh5800kZ9US9xTbLAQdHpg,1523
+sclab-0.3.2.dist-info/WHEEL,sha256=G2gURzTEtmeR8nrdXUJfNiB3VYVxigPQ-bEQujpNiNs,82
+sclab-0.3.2.dist-info/METADATA,sha256=YOX9WvDuWL1ew3JOIaAwY6MvpCHCEHxOdTc6dTCp9jM,4437
+sclab-0.3.2.dist-info/RECORD,,