sclab 0.1.7__py3-none-any.whl → 0.1.8__py3-none-any.whl
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sclab/__init__.py
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sclab/dataset/_dataset.py
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@@ -336,7 +336,7 @@ class SCLabDataset(EventClient):
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self.broker.publish("dset_selected_rows_change", value)
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@property
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def selected_rows_mask(self) -> NDArray[np.
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def selected_rows_mask(self) -> NDArray[np.bool_]:
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return self.metadata.index.isin(self.selected_rows)
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@property
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@@ -1,6 +1,6 @@
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Metadata-Version: 2.3
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Name: sclab
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Version: 0.1.
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Version: 0.1.8
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Summary: sclab
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Author-email: Argenis Arriojas <ArriojasMaldonado001@umb.edu>
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Requires-Python: >=3.10,<3.13
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@@ -16,7 +16,7 @@ Requires-Dist: ipywidgets
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Requires-Dist: itables
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Requires-Dist: numpy<2.2
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Requires-Dist: pandas
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Requires-Dist: plotly
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Requires-Dist: plotly<6.0
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Requires-Dist: scanpy
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Requires-Dist: scikit-learn
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Requires-Dist: scikit-misc
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@@ -53,23 +53,29 @@ pip install sclab
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Open a Jupyter Notebook and run the following:
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```python
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from IPython.display import display
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from sclab import SCLabDashboard
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from sclab.examples.processor_steps import QC, Preprocess, PCA, Neighbors, UMAP, Cluster
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import scanpy as sc
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from IPython.display import display
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# Load your data
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adata = sc.read_10x_h5("your_data.h5")
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# Create dashboard
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dashboard = SCLabDashboard(adata, name="My Analysis")
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# Add desired processing steps to the interface
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dashboard.pr.add_steps({"Processing": [QC, Preprocess, PCA, Neighbors, UMAP, Cluster]})
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# Display dashboard
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display(dashboard)
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# The dashboard provides easy access to components:
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dashboard.ds # Dataset (wrapper for AnnData)
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dashboard.pl # Plotter
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dashboard.pr # Processor
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# dashboard.ds # Dataset (wrapper for AnnData)
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# dashboard.pl # Plotter
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# dashboard.pr # Processor
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# the resulting AnnData object is found within the dataset object:
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# dashboard.ds.adata
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```
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## Components
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@@ -129,10 +135,10 @@ This project is licensed under the BSD 3-Clause License - see the [LICENSE](LICE
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If you use SCLab in your research, please cite:
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```bibtex
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@software{
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@software{sclab2025,
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author = {Arriojas, Argenis},
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title = {SCLab: Interactive Single-Cell Analysis Toolkit},
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year = {
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year = {2025},
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publisher = {GitHub},
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url = {https://github.com/umbibio/sclab}
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}
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sclab/__init__.py,sha256=
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sclab/__init__.py,sha256=zrh5eCnp4YNbD2Y1-vTwnl4_9MIGLJ0HRsTZKI4inrM,95
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sclab/_io.py,sha256=mVazSViXfKpfY1iUNZXgQc1hutu6MXTaGZXF4rcqKLE,875
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sclab/_sclab.py,sha256=Eln0nWlnFpnDabW94UK8qOdxIys9FWSyqsm8lvlnk4A,2156
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sclab/dataset/__init__.py,sha256=f9PoXIMAPnC3Var1ODr3mXkotW6u6NRPQvlgcWYXk54,143
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sclab/dataset/_dataset.py,sha256=
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sclab/dataset/_dataset.py,sha256=rYzYxsUdlzaLYpvrvgxWuMxbM47_GjvCLAmHehUxhIc,14410
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sclab/dataset/_exceptions.py,sha256=g8RJL8PiRmD4--PkOs5CZth_qeaduvieMlKJNkrUIYA,45
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sclab/dataset/plotter/__init__.py,sha256=pdWhAywnoc1_nnIcD-qNW0U364-yo4k5DwP79y9NVgA,129
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sclab/dataset/plotter/_controls.py,sha256=NBDdtY1wQbIEvE_WToigR5bEEoi3z30_67T_dLSOSIo,20295
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sclab/examples/processor_steps/_preprocess.py,sha256=ftuWt9asef_a5OU195UazfI34MjA82nE1LWTPjhXPPY,6340
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sclab/examples/processor_steps/_qc.py,sha256=VPiyY7o7YM8v6hetjxrSfnrn_fJhuC5EzeMi1bSUsw0,3242
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sclab/examples/processor_steps/_umap.py,sha256=Geyme_biIHxGE7zD8dsECUfQy31ff-w1BrAN55BW5Ug,1406
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sclab-0.1.
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sclab-0.1.
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sclab-0.1.
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sclab-0.1.8.dist-info/WHEEL,sha256=CpUCUxeHQbRN5UGRQHYRJorO5Af-Qy_fHMctcQ8DSGI,82
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sclab-0.1.8.dist-info/METADATA,sha256=_vCAnf3Q-CTe-Q9oXPbf7X_vUQbYYqb2dP9tkmTlokc,4091
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sclab-0.1.8.dist-info/RECORD,,
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File without changes
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