sciv 0.0.87__py3-none-any.whl → 0.0.88__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- sciv/model/_core_.py +9 -0
- sciv/tool/_algorithm_.py +1311 -1311
- sciv/tool/_random_walk_.py +12 -8
- {sciv-0.0.87.dist-info → sciv-0.0.88.dist-info}/METADATA +1 -1
- {sciv-0.0.87.dist-info → sciv-0.0.88.dist-info}/RECORD +7 -7
- {sciv-0.0.87.dist-info → sciv-0.0.88.dist-info}/WHEEL +0 -0
- {sciv-0.0.87.dist-info → sciv-0.0.88.dist-info}/licenses/LICENSE +0 -0
sciv/model/_core_.py
CHANGED
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@@ -81,6 +81,7 @@ def _check_and_run_two_step_(
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gamma: float = 0.05,
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enrichment_gamma: float = 0.05,
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p: int = 2,
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+
n_jobs: int = -1,
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min_seed_cell_rate: float = 0.01,
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max_seed_cell_rate: float = 0.05,
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credible_threshold: float = 0,
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@@ -235,6 +236,7 @@ def _check_and_run_two_step_(
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"gamma": gamma,
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"enrichment_gamma": enrichment_gamma,
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"p": p,
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+
"n_jobs": n_jobs,
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"min_seed_cell_rate": min_seed_cell_rate,
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"max_seed_cell_rate": max_seed_cell_rate,
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"credible_threshold": credible_threshold,
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@@ -383,6 +385,7 @@ def core(
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gamma: float = 0.05,
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enrichment_gamma: float = 0.05,
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p: int = 2,
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n_jobs: int = -1,
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min_seed_cell_rate: float = 0.01,
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max_seed_cell_rate: float = 0.05,
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credible_threshold: float = 0,
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@@ -435,6 +438,7 @@ def core(
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:param gamma: reset weight for random walk;
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:param enrichment_gamma: reset weight for random walk for enrichment;
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:param p: Distance used for loss {1: Manhattan distance, 2: Euclidean distance};
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:param n_jobs: The maximum number of concurrently running jobs;
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:param min_seed_cell_rate: The minimum percentage of seed cells in all cells;
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:param max_seed_cell_rate: The maximum percentage of seed cells in all cells;
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:param credible_threshold: The threshold for determining the credibility of enriched cells in the context of
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@@ -516,6 +520,7 @@ def core(
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epsilon=epsilon,
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gamma=gamma,
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p=p,
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n_jobs=n_jobs,
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min_seed_cell_rate=min_seed_cell_rate,
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max_seed_cell_rate=max_seed_cell_rate,
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credible_threshold=max_seed_cell_rate,
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@@ -701,6 +706,7 @@ def core(
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gamma=gamma,
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enrichment_gamma=enrichment_gamma,
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p=p,
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n_jobs=n_jobs,
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min_seed_cell_rate=min_seed_cell_rate,
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max_seed_cell_rate=max_seed_cell_rate,
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credible_threshold=credible_threshold,
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@@ -899,6 +905,7 @@ def core(
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gamma=gamma,
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enrichment_gamma=enrichment_gamma,
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p=p,
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n_jobs=n_jobs,
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min_seed_cell_rate=min_seed_cell_rate,
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max_seed_cell_rate=max_seed_cell_rate,
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credible_threshold=credible_threshold,
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@@ -1072,6 +1079,7 @@ def knock(
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epsilon=params["epsilon"],
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gamma=params["gamma"],
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p=params["p"],
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n_jobs=params["n_jobs"] if "n_jobs" in params else -1,
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min_seed_cell_rate=params["min_seed_cell_rate"],
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max_seed_cell_rate=params["max_seed_cell_rate"],
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credible_threshold=params["credible_threshold"],
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@@ -1109,6 +1117,7 @@ def knock(
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gamma=params["gamma"],
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enrichment_gamma=params["enrichment_gamma"],
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p=params["p"],
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n_jobs=params["n_jobs"] if "n_jobs" in params else -1,
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min_seed_cell_rate=params["min_seed_cell_rate"],
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max_seed_cell_rate=params["max_seed_cell_rate"],
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credible_threshold=params["credible_threshold"],
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