sciv 0.0.86__py3-none-any.whl → 0.0.87__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- sciv/preprocessing/_scanpy_.py +1 -1
- sciv/tool/_random_walk_.py +2 -1
- {sciv-0.0.86.dist-info → sciv-0.0.87.dist-info}/METADATA +1 -1
- {sciv-0.0.86.dist-info → sciv-0.0.87.dist-info}/RECORD +6 -6
- {sciv-0.0.86.dist-info → sciv-0.0.87.dist-info}/WHEEL +0 -0
- {sciv-0.0.86.dist-info → sciv-0.0.87.dist-info}/licenses/LICENSE +0 -0
sciv/preprocessing/_scanpy_.py
CHANGED
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@@ -103,7 +103,7 @@ def filter_data(
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f"Filtered out cells {cells_count - filter_adata.shape[0]}, "
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f"Filtered out peaks {peaks_count - filter_adata.shape[1]}"
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)
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-
ul.log(__name__).info(f"Size of filtered scATAC data: {filter_adata.shape}")
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+
ul.log(__name__).info(f"Size of filtered scATAC-seq data: {filter_adata.shape}")
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filter_adata.uns["step"] = 0
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return filter_adata
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sciv/tool/_random_walk_.py
CHANGED
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@@ -630,7 +630,8 @@ class RandomWalk:
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return
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# Directly obtain descending index
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633
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-
trait_value_sort_index = np.
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+
trait_value_sort_index = np.argsort(trait_value).astype(int)
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trait_value_sort_index = trait_value_sort_index[::-1]
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# Calculate the number of cells with>0
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_gt0_cell_size = (trait_value > 0).sum()
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@@ -1,6 +1,6 @@
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Metadata-Version: 2.4
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Name: sciv
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Version: 0.0.
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+
Version: 0.0.87
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Summary: Unveiling the pivotal cell types involved in variant function regulation at a single-cell resolution
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Project-URL: github, https://github.com/YuZhengM/sciv
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Author-email: Zheng-Min Yu <yuzmbio@163.com>
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@@ -23,17 +23,17 @@ sciv/preprocessing/__init__.py,sha256=56RgDai5I3sZ4hl3aaV80ogOeUscYsU3nJUWE80jZ-
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sciv/preprocessing/_anndata_.py,sha256=3d1cHFs1YA9UZkIPE089nZHFi-DjK-c1fRyi2shfSh4,6302
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sciv/preprocessing/_gencode_.py,sha256=HKhRgK76khGepdv4FaKiOvTys1uJTbvIyrKUta5W0K8,2108
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sciv/preprocessing/_gsea_.py,sha256=AH_PpUNfMN7WkF0pqAuUhEC6qZwKrtQm6VaaYu6JLfI,3803
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sciv/preprocessing/_scanpy_.py,sha256=
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sciv/preprocessing/_scanpy_.py,sha256=flC10W5YPgJE5Ccxt5hP8qW3Q3cOi8DZ36Z1j9D3oNA,11481
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sciv/preprocessing/_scvi_.py,sha256=ZIDkQ_4deYmzSMiAbu5C3j_jMMl7hBTFLCBXHCNj3B4,10332
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sciv/preprocessing/_snapatac_.py,sha256=Dq8CHF7Psl3CQszaEokQYO56Oe2uzyWOy_cGlaOywfc,27798
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sciv/tool/__init__.py,sha256=WXzHkWt6RgBC3qqD-98nR5wQmt6oC850ox_VpMrapSU,2468
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sciv/tool/_algorithm_.py,sha256=okGpH2OrBTO59LkyznT4gRi5S45oAcnO10Kxo5Xzy4I,47991
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sciv/tool/_matrix_.py,sha256=O1EAhA9wxh06P_eOxEBesK7kO7IExKlhH6uJzGh1HBM,24322
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sciv/tool/_random_walk_.py,sha256=
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sciv/tool/_random_walk_.py,sha256=yy59fWEo9oDk89tsk0qA6Z3maMgwkYD3A7pGgVO6lOQ,47277
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sciv/util/__init__.py,sha256=nOxZ8if27X7AUJ6hZwTwxOJwIBJb0obWlHjqCzjg_Gc,1964
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sciv/util/_constant_.py,sha256=w0wKQd8guLd1ZTW24_5aECrWsIWDiNQmEpLsWlHar1A,3000
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sciv/util/_core_.py,sha256=ZD2uSnEBHVu0i9TmXWzri_3bXZzYKnIZk818gW3zadE,14751
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sciv-0.0.
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sciv-0.0.
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sciv-0.0.
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sciv-0.0.
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sciv-0.0.87.dist-info/METADATA,sha256=Q39bc1CmexjHnKHOcAktc4MNcKHxFqIJstOPOhSCKnc,3465
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sciv-0.0.87.dist-info/WHEEL,sha256=WLgqFyCfm_KASv4WHyYy0P3pM_m7J5L9k2skdKLirC8,87
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sciv-0.0.87.dist-info/licenses/LICENSE,sha256=4UvHVf3qCOZjHLs4LkYz8u96XRpXnZrpTKrkUQPs5_A,1075
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sciv-0.0.87.dist-info/RECORD,,
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File without changes
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File without changes
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