sciv 0.0.85__py3-none-any.whl → 0.0.87__py3-none-any.whl

sciv/preprocessing/_scanpy_.py

@@ -103,7 +103,7 @@ def filter_data(
         f"Filtered out cells {cells_count - filter_adata.shape[0]}, "
         f"Filtered out peaks {peaks_count - filter_adata.shape[1]}"
     )
-    ul.log(__name__).info(f"Size of filtered scATAC data: {filter_adata.shape}")
+    ul.log(__name__).info(f"Size of filtered scATAC-seq data: {filter_adata.shape}")
     filter_adata.uns["step"] = 0
     return filter_adata
 

sciv/tool/_random_walk_.py

@@ -477,6 +477,7 @@ class RandomWalk:
             1. The weights used in the iteration of random walk.
             2. Assign different weight matrices to seed cells.
         """
+        ul.log(__name__).info("Obtain transition probability matrix.")
         data_weight = to_dense(cell_cell_matrix, is_array=True)
         cell_sum_weight = data_weight.sum(axis=1)[:, np.newaxis]
         cell_sum_weight[cell_sum_weight == 0] = 1
@@ -629,7 +630,8 @@ class RandomWalk:
                 return
 
             # Directly obtain descending index
-            trait_value_sort_index = np.argpartition(trait_value, -trait_value.size)[::-1]
+            trait_value_sort_index = np.argsort(trait_value).astype(int)
+            trait_value_sort_index = trait_value_sort_index[::-1]
 
             # Calculate the number of cells with>0
             _gt0_cell_size = (trait_value > 0).sum()

{sciv-0.0.85.dist-info → sciv-0.0.87.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: sciv
-Version: 0.0.85
+Version: 0.0.87
 Summary: Unveiling the pivotal cell types involved in variant function regulation at a single-cell resolution
 Project-URL: github, https://github.com/YuZhengM/sciv
 Author-email: Zheng-Min Yu <yuzmbio@163.com>

{sciv-0.0.85.dist-info → sciv-0.0.87.dist-info}/RECORD

@@ -23,17 +23,17 @@ sciv/preprocessing/__init__.py,sha256=56RgDai5I3sZ4hl3aaV80ogOeUscYsU3nJUWE80jZ-
 sciv/preprocessing/_anndata_.py,sha256=3d1cHFs1YA9UZkIPE089nZHFi-DjK-c1fRyi2shfSh4,6302
 sciv/preprocessing/_gencode_.py,sha256=HKhRgK76khGepdv4FaKiOvTys1uJTbvIyrKUta5W0K8,2108
 sciv/preprocessing/_gsea_.py,sha256=AH_PpUNfMN7WkF0pqAuUhEC6qZwKrtQm6VaaYu6JLfI,3803
-sciv/preprocessing/_scanpy_.py,sha256=mmkk4cMCzJCziF49RnOuXBiF4frS6aSiwZdUmfDAg4A,11477
+sciv/preprocessing/_scanpy_.py,sha256=flC10W5YPgJE5Ccxt5hP8qW3Q3cOi8DZ36Z1j9D3oNA,11481
 sciv/preprocessing/_scvi_.py,sha256=ZIDkQ_4deYmzSMiAbu5C3j_jMMl7hBTFLCBXHCNj3B4,10332
 sciv/preprocessing/_snapatac_.py,sha256=Dq8CHF7Psl3CQszaEokQYO56Oe2uzyWOy_cGlaOywfc,27798
 sciv/tool/__init__.py,sha256=WXzHkWt6RgBC3qqD-98nR5wQmt6oC850ox_VpMrapSU,2468
 sciv/tool/_algorithm_.py,sha256=okGpH2OrBTO59LkyznT4gRi5S45oAcnO10Kxo5Xzy4I,47991
 sciv/tool/_matrix_.py,sha256=O1EAhA9wxh06P_eOxEBesK7kO7IExKlhH6uJzGh1HBM,24322
-sciv/tool/_random_walk_.py,sha256=PyVz11dA0rfbYyGYw3WE9BH9KiTUSRHsNDf1J-wfIn0,47156
+sciv/tool/_random_walk_.py,sha256=yy59fWEo9oDk89tsk0qA6Z3maMgwkYD3A7pGgVO6lOQ,47277
 sciv/util/__init__.py,sha256=nOxZ8if27X7AUJ6hZwTwxOJwIBJb0obWlHjqCzjg_Gc,1964
 sciv/util/_constant_.py,sha256=w0wKQd8guLd1ZTW24_5aECrWsIWDiNQmEpLsWlHar1A,3000
 sciv/util/_core_.py,sha256=ZD2uSnEBHVu0i9TmXWzri_3bXZzYKnIZk818gW3zadE,14751
-sciv-0.0.85.dist-info/METADATA,sha256=wJDwU4Oks-klm0j2Lg0TyoV7gqF_Gn0JwKa7_c3iCGA,3465
-sciv-0.0.85.dist-info/WHEEL,sha256=WLgqFyCfm_KASv4WHyYy0P3pM_m7J5L9k2skdKLirC8,87
-sciv-0.0.85.dist-info/licenses/LICENSE,sha256=4UvHVf3qCOZjHLs4LkYz8u96XRpXnZrpTKrkUQPs5_A,1075
-sciv-0.0.85.dist-info/RECORD,,
+sciv-0.0.87.dist-info/METADATA,sha256=Q39bc1CmexjHnKHOcAktc4MNcKHxFqIJstOPOhSCKnc,3465
+sciv-0.0.87.dist-info/WHEEL,sha256=WLgqFyCfm_KASv4WHyYy0P3pM_m7J5L9k2skdKLirC8,87
+sciv-0.0.87.dist-info/licenses/LICENSE,sha256=4UvHVf3qCOZjHLs4LkYz8u96XRpXnZrpTKrkUQPs5_A,1075
+sciv-0.0.87.dist-info/RECORD,,