sciv 0.0.106__py3-none-any.whl → 0.0.107__py3-none-any.whl

sciv/tool/_algorithm_.py

@@ -982,12 +982,16 @@ def overlap_sum(regions: AnnData, variants: dict, trait_info: DataFrame, n_jobs:
             # Collect non-zero values
             if matrix_sum.size == 1:
                 val = float(matrix_sum)
+
                 if val != 0:
                     local_row_indices.append(row_idx)
                     local_col_indices.append(col_idx)
                     local_data_vals.append(val)
+
             else:
+
                 for t_idx, v in enumerate(matrix_sum):
+
                     if v != 0:
                         local_row_indices.append(row_idx)
                         local_col_indices.append(col_idx + t_idx)

sciv/tool/_random_walk_.py

@@ -86,7 +86,7 @@ class RandomWalkModel(nn.Module):
         self.p = p
         self.pbar = pbar
 
-        is_gpu_available = check_gpu_availability(verbose=False)
+        is_gpu_available = check_gpu_availability()
 
         self.device = 'cuda' if (device == 'gpu' or (device == 'auto' and is_gpu_available)) else 'cpu'
 
@@ -197,7 +197,7 @@ def random_walk(
     device: str = 'auto'
 ) -> matrix_data:
 
-    availability = check_gpu_availability(False)
+    availability = check_gpu_availability()
 
     if device == 'cpu' or (device == 'auto' and not availability):
         sample_count = seed_cell_weight.shape[1]
@@ -339,7 +339,7 @@ class RandomWalk:
         self.benchmark_count = benchmark_count
         self._enrichment_seed_cell_min_count_ = 3
 
-        self.is_gpu_available = check_gpu_availability(False)
+        self.is_gpu_available = check_gpu_availability()
 
         if not is_simple and self.is_ablation:
             if "cell_mutual_knn" not in cc_adata.layers:

{sciv-0.0.106.dist-info → sciv-0.0.107.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: sciv
-Version: 0.0.106
+Version: 0.0.107
 Summary: Unveiling the pivotal cell types involved in variant function regulation at a single-cell resolution
 Project-URL: github, https://github.com/YuZhengM/sciv
 Author-email: Zheng-Min Yu <yuzmbio@163.com>

{sciv-0.0.106.dist-info → sciv-0.0.107.dist-info}/RECORD

@@ -27,13 +27,13 @@ sciv/preprocessing/_scanpy_.py,sha256=95kt6ylfqKmjLr8GZ1XH1khP9Q3uBYy4vqc4_2Zf1J
 sciv/preprocessing/_scvi_.py,sha256=RfphdljTzA0sNuae44rKuP8YCOv5Cl23e6txCIXK_mI,11544
 sciv/preprocessing/_snapatac_.py,sha256=Dq8CHF7Psl3CQszaEokQYO56Oe2uzyWOy_cGlaOywfc,27798
 sciv/tool/__init__.py,sha256=WgyiWuCvBadTZfNEB70VurbN1YfpNodnVCIcAABTYEA,2512
-sciv/tool/_algorithm_.py,sha256=5H_LHGyRfx0ng9wm8pux0_dEXuJJJVdnGLM9MjD12Fo,53682
+sciv/tool/_algorithm_.py,sha256=pQuCI7Jxdnd6KxenFNIx6iVHR2_UK04oyDleP5aOuPU,53690
 sciv/tool/_matrix_.py,sha256=SnC3sXic_ufuEXStcD_HncvYH6apBdNK6nhG6jFLmjA,24324
-sciv/tool/_random_walk_.py,sha256=2DPBRtd4A2MadfYDhkTw33WOATriiCULozNsUPE6lsY,48912
+sciv/tool/_random_walk_.py,sha256=M73RmnP-CZAiIxMl5YfkP6wkH2xQ10dCkjfwsJTKrBQ,48889
 sciv/util/__init__.py,sha256=nER-hRRaBGl3CGgl2rLZAUOQ3uY6-m9wQ9VNrjO5EFE,2014
 sciv/util/_constant_.py,sha256=w0wKQd8guLd1ZTW24_5aECrWsIWDiNQmEpLsWlHar1A,3000
 sciv/util/_core_.py,sha256=00v5MrSqZxLnJvbfijD7DuR7innW_R0J6CAwivAsNNs,16767
-sciv-0.0.106.dist-info/METADATA,sha256=cQyFaOwpG9KINxPYNpSzs3RuKpZxXHggePhlQOA9nb0,3495
-sciv-0.0.106.dist-info/WHEEL,sha256=WLgqFyCfm_KASv4WHyYy0P3pM_m7J5L9k2skdKLirC8,87
-sciv-0.0.106.dist-info/licenses/LICENSE,sha256=4UvHVf3qCOZjHLs4LkYz8u96XRpXnZrpTKrkUQPs5_A,1075
-sciv-0.0.106.dist-info/RECORD,,
+sciv-0.0.107.dist-info/METADATA,sha256=COiUTIK3Dd14FAZBJWZDwnDQPQ0JSsXZ5I_3k9x2fC8,3495
+sciv-0.0.107.dist-info/WHEEL,sha256=WLgqFyCfm_KASv4WHyYy0P3pM_m7J5L9k2skdKLirC8,87
+sciv-0.0.107.dist-info/licenses/LICENSE,sha256=4UvHVf3qCOZjHLs4LkYz8u96XRpXnZrpTKrkUQPs5_A,1075
+sciv-0.0.107.dist-info/RECORD,,