scitex 2.7.3__py3-none-any.whl → 2.10.0__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- scitex/__init__.py +15 -7
- scitex/__version__.py +1 -2
- scitex/_install_guide.py +250 -0
- scitex/_optional_deps.py +206 -39
- scitex/ai/_gen_ai/_Groq.py +2 -4
- scitex/ai/_gen_ai/_OpenAI.py +5 -2
- scitex/ai/_gen_ai/_Perplexity.py +20 -6
- scitex/audio/__init__.py +24 -15
- scitex/audio/_cross_process_lock.py +139 -0
- scitex/audio/_mcp_handlers.py +256 -0
- scitex/audio/_mcp_tool_schemas.py +203 -0
- scitex/audio/engines/elevenlabs_engine.py +5 -2
- scitex/audio/mcp_server.py +98 -457
- scitex/bridge/__init__.py +30 -19
- scitex/bridge/_figrecipe.py +245 -0
- scitex/bridge/_helpers.py +2 -1
- scitex/bridge/_plt_vis.py +23 -10
- scitex/bridge/_stats_plt.py +18 -5
- scitex/bridge/_stats_vis.py +16 -2
- scitex/browser/__init__.py +84 -44
- scitex/browser/automation/__init__.py +5 -1
- scitex/browser/core/BrowserMixin.py +17 -4
- scitex/browser/core/__init__.py +11 -2
- scitex/browser/remote/CaptchaHandler.py +1 -1
- scitex/browser/remote/ZenRowsAPIClient.py +1 -1
- scitex/capture/grid.py +487 -0
- scitex/capture/mcp_handlers.py +401 -0
- scitex/capture/mcp_tool_defs.py +192 -0
- scitex/capture/mcp_tools.py +241 -0
- scitex/capture/mcp_utils.py +30 -0
- scitex/cli/convert.py +421 -0
- scitex/cli/main.py +6 -4
- scitex/datetime/__init__.py +46 -0
- scitex/datetime/_linspace.py +100 -0
- scitex/datetime/_normalize_timestamp.py +306 -0
- scitex/db/_delete_duplicates.py +4 -4
- scitex/db/_sqlite3/_delete_duplicates.py +11 -2
- scitex/dev/plt/__init__.py +61 -62
- scitex/dev/plt/demo_plotters/__init__.py +0 -0
- scitex/dev/plt/demo_plotters/plot_mpl_axhline.py +28 -0
- scitex/dev/plt/demo_plotters/plot_mpl_axhspan.py +28 -0
- scitex/dev/plt/demo_plotters/plot_mpl_axvline.py +28 -0
- scitex/dev/plt/demo_plotters/plot_mpl_axvspan.py +28 -0
- scitex/dev/plt/demo_plotters/plot_mpl_bar.py +29 -0
- scitex/dev/plt/demo_plotters/plot_mpl_barh.py +29 -0
- scitex/dev/plt/demo_plotters/plot_mpl_boxplot.py +28 -0
- scitex/dev/plt/demo_plotters/plot_mpl_contour.py +31 -0
- scitex/dev/plt/demo_plotters/plot_mpl_contourf.py +31 -0
- scitex/dev/plt/demo_plotters/plot_mpl_errorbar.py +30 -0
- scitex/dev/plt/demo_plotters/plot_mpl_eventplot.py +28 -0
- scitex/dev/plt/demo_plotters/plot_mpl_fill.py +30 -0
- scitex/dev/plt/demo_plotters/plot_mpl_fill_between.py +31 -0
- scitex/dev/plt/demo_plotters/plot_mpl_hexbin.py +28 -0
- scitex/dev/plt/demo_plotters/plot_mpl_hist.py +28 -0
- scitex/dev/plt/demo_plotters/plot_mpl_hist2d.py +28 -0
- scitex/dev/plt/demo_plotters/plot_mpl_imshow.py +29 -0
- scitex/dev/plt/demo_plotters/plot_mpl_pcolormesh.py +31 -0
- scitex/dev/plt/demo_plotters/plot_mpl_pie.py +29 -0
- scitex/dev/plt/demo_plotters/plot_mpl_plot.py +29 -0
- scitex/dev/plt/demo_plotters/plot_mpl_quiver.py +31 -0
- scitex/dev/plt/demo_plotters/plot_mpl_scatter.py +28 -0
- scitex/dev/plt/demo_plotters/plot_mpl_stackplot.py +31 -0
- scitex/dev/plt/demo_plotters/plot_mpl_stem.py +29 -0
- scitex/dev/plt/demo_plotters/plot_mpl_step.py +29 -0
- scitex/dev/plt/demo_plotters/plot_mpl_violinplot.py +28 -0
- scitex/dev/plt/demo_plotters/plot_sns_barplot.py +29 -0
- scitex/dev/plt/demo_plotters/plot_sns_boxplot.py +29 -0
- scitex/dev/plt/demo_plotters/plot_sns_heatmap.py +28 -0
- scitex/dev/plt/demo_plotters/plot_sns_histplot.py +29 -0
- scitex/dev/plt/demo_plotters/plot_sns_kdeplot.py +29 -0
- scitex/dev/plt/demo_plotters/plot_sns_lineplot.py +31 -0
- scitex/dev/plt/demo_plotters/plot_sns_scatterplot.py +29 -0
- scitex/dev/plt/demo_plotters/plot_sns_stripplot.py +29 -0
- scitex/dev/plt/demo_plotters/plot_sns_swarmplot.py +29 -0
- scitex/dev/plt/demo_plotters/plot_sns_violinplot.py +29 -0
- scitex/dev/plt/demo_plotters/plot_stx_bar.py +29 -0
- scitex/dev/plt/demo_plotters/plot_stx_barh.py +29 -0
- scitex/dev/plt/demo_plotters/plot_stx_box.py +28 -0
- scitex/dev/plt/demo_plotters/plot_stx_boxplot.py +28 -0
- scitex/dev/plt/demo_plotters/plot_stx_conf_mat.py +28 -0
- scitex/dev/plt/demo_plotters/plot_stx_contour.py +31 -0
- scitex/dev/plt/demo_plotters/plot_stx_ecdf.py +28 -0
- scitex/dev/plt/demo_plotters/plot_stx_errorbar.py +30 -0
- scitex/dev/plt/demo_plotters/plot_stx_fill_between.py +31 -0
- scitex/dev/plt/demo_plotters/plot_stx_fillv.py +28 -0
- scitex/dev/plt/demo_plotters/plot_stx_heatmap.py +28 -0
- scitex/dev/plt/demo_plotters/plot_stx_image.py +28 -0
- scitex/dev/plt/demo_plotters/plot_stx_imshow.py +28 -0
- scitex/dev/plt/demo_plotters/plot_stx_joyplot.py +28 -0
- scitex/dev/plt/demo_plotters/plot_stx_kde.py +28 -0
- scitex/dev/plt/demo_plotters/plot_stx_line.py +28 -0
- scitex/dev/plt/demo_plotters/plot_stx_mean_ci.py +28 -0
- scitex/dev/plt/demo_plotters/plot_stx_mean_std.py +28 -0
- scitex/dev/plt/demo_plotters/plot_stx_median_iqr.py +28 -0
- scitex/dev/plt/demo_plotters/plot_stx_raster.py +28 -0
- scitex/dev/plt/demo_plotters/plot_stx_rectangle.py +28 -0
- scitex/dev/plt/demo_plotters/plot_stx_scatter.py +29 -0
- scitex/dev/plt/demo_plotters/plot_stx_shaded_line.py +29 -0
- scitex/dev/plt/demo_plotters/plot_stx_violin.py +28 -0
- scitex/dev/plt/demo_plotters/plot_stx_violinplot.py +28 -0
- scitex/dev/plt/mpl/get_dir_ax.py +46 -0
- scitex/dev/plt/mpl/get_signatures.py +176 -0
- scitex/dev/plt/mpl/get_signatures_details.py +522 -0
- scitex/dev/plt/plot_mpl_axhline.py +0 -0
- scitex/dev/plt/plot_mpl_axhspan.py +0 -0
- scitex/dev/plt/plot_mpl_axvline.py +0 -0
- scitex/dev/plt/plot_mpl_axvspan.py +0 -0
- scitex/dev/plt/plot_mpl_bar.py +0 -0
- scitex/dev/plt/plot_mpl_barh.py +0 -0
- scitex/dev/plt/plot_mpl_boxplot.py +0 -0
- scitex/dev/plt/plot_mpl_contour.py +0 -0
- scitex/dev/plt/plot_mpl_contourf.py +0 -0
- scitex/dev/plt/plot_mpl_errorbar.py +0 -0
- scitex/dev/plt/plot_mpl_eventplot.py +0 -0
- scitex/dev/plt/plot_mpl_fill.py +0 -0
- scitex/dev/plt/plot_mpl_fill_between.py +0 -0
- scitex/dev/plt/plot_mpl_hexbin.py +0 -0
- scitex/dev/plt/plot_mpl_hist.py +0 -0
- scitex/dev/plt/plot_mpl_hist2d.py +0 -0
- scitex/dev/plt/plot_mpl_imshow.py +0 -0
- scitex/dev/plt/plot_mpl_pcolormesh.py +0 -0
- scitex/dev/plt/plot_mpl_pie.py +0 -0
- scitex/dev/plt/plot_mpl_plot.py +0 -0
- scitex/dev/plt/plot_mpl_quiver.py +0 -0
- scitex/dev/plt/plot_mpl_scatter.py +0 -0
- scitex/dev/plt/plot_mpl_stackplot.py +0 -0
- scitex/dev/plt/plot_mpl_stem.py +0 -0
- scitex/dev/plt/plot_mpl_step.py +0 -0
- scitex/dev/plt/plot_mpl_violinplot.py +0 -0
- scitex/dev/plt/plot_sns_barplot.py +0 -0
- scitex/dev/plt/plot_sns_boxplot.py +0 -0
- scitex/dev/plt/plot_sns_heatmap.py +0 -0
- scitex/dev/plt/plot_sns_histplot.py +0 -0
- scitex/dev/plt/plot_sns_kdeplot.py +0 -0
- scitex/dev/plt/plot_sns_lineplot.py +0 -0
- scitex/dev/plt/plot_sns_scatterplot.py +0 -0
- scitex/dev/plt/plot_sns_stripplot.py +0 -0
- scitex/dev/plt/plot_sns_swarmplot.py +0 -0
- scitex/dev/plt/plot_sns_violinplot.py +0 -0
- scitex/dev/plt/plot_stx_bar.py +0 -0
- scitex/dev/plt/plot_stx_barh.py +0 -0
- scitex/dev/plt/plot_stx_box.py +0 -0
- scitex/dev/plt/plot_stx_boxplot.py +0 -0
- scitex/dev/plt/plot_stx_conf_mat.py +0 -0
- scitex/dev/plt/plot_stx_contour.py +0 -0
- scitex/dev/plt/plot_stx_ecdf.py +0 -0
- scitex/dev/plt/plot_stx_errorbar.py +0 -0
- scitex/dev/plt/plot_stx_fill_between.py +0 -0
- scitex/dev/plt/plot_stx_fillv.py +0 -0
- scitex/dev/plt/plot_stx_heatmap.py +0 -0
- scitex/dev/plt/plot_stx_image.py +0 -0
- scitex/dev/plt/plot_stx_imshow.py +0 -0
- scitex/dev/plt/plot_stx_joyplot.py +0 -0
- scitex/dev/plt/plot_stx_kde.py +0 -0
- scitex/dev/plt/plot_stx_line.py +0 -0
- scitex/dev/plt/plot_stx_mean_ci.py +0 -0
- scitex/dev/plt/plot_stx_mean_std.py +0 -0
- scitex/dev/plt/plot_stx_median_iqr.py +0 -0
- scitex/dev/plt/plot_stx_raster.py +0 -0
- scitex/dev/plt/plot_stx_rectangle.py +0 -0
- scitex/dev/plt/plot_stx_scatter.py +0 -0
- scitex/dev/plt/plot_stx_shaded_line.py +0 -0
- scitex/dev/plt/plot_stx_violin.py +0 -0
- scitex/dev/plt/plot_stx_violinplot.py +0 -0
- scitex/diagram/README.md +197 -0
- scitex/diagram/__init__.py +48 -0
- scitex/diagram/_compile.py +312 -0
- scitex/diagram/_diagram.py +355 -0
- scitex/diagram/_presets.py +173 -0
- scitex/diagram/_schema.py +182 -0
- scitex/diagram/_split.py +278 -0
- scitex/dict/_pop_keys.py +1 -7
- scitex/dsp/__init__.py +15 -10
- scitex/dsp/add_noise.py +5 -2
- scitex/dsp/example.py +35 -22
- scitex/dsp/filt.py +8 -3
- scitex/dsp/reference.py +3 -2
- scitex/dsp/utils/__init__.py +2 -1
- scitex/dsp/utils/_differential_bandpass_filters.py +14 -4
- scitex/dt/__init__.py +39 -2
- scitex/errors.py +82 -521
- scitex/fig/__init__.py +4 -4
- scitex/fig/editor/__init__.py +5 -2
- scitex/fig/editor/_dearpygui_editor.py +1 -1
- scitex/fig/editor/_mpl_editor.py +1 -1
- scitex/fig/editor/_qt_editor.py +1 -1
- scitex/fig/editor/_tkinter_editor.py +1 -1
- scitex/fig/editor/edit/__init__.py +50 -0
- scitex/fig/editor/edit/backend_detector.py +109 -0
- scitex/fig/editor/edit/bundle_resolver.py +240 -0
- scitex/fig/editor/edit/editor_launcher.py +239 -0
- scitex/fig/editor/edit/manual_handler.py +53 -0
- scitex/fig/editor/edit/panel_loader.py +232 -0
- scitex/fig/editor/edit/path_resolver.py +67 -0
- scitex/fig/editor/flask_editor/_bbox.py +23 -0
- scitex/fig/editor/flask_editor/_core.py +908 -103
- scitex/fig/editor/flask_editor/_renderer.py +74 -0
- scitex/fig/editor/flask_editor/static/css/base/reset.css +41 -0
- scitex/fig/editor/flask_editor/static/css/base/typography.css +16 -0
- scitex/fig/editor/flask_editor/static/css/base/variables.css +85 -0
- scitex/fig/editor/flask_editor/static/css/components/buttons.css +217 -0
- scitex/fig/editor/flask_editor/static/css/components/context-menu.css +93 -0
- scitex/fig/editor/flask_editor/static/css/components/dropdown.css +57 -0
- scitex/fig/editor/flask_editor/static/css/components/forms.css +112 -0
- scitex/fig/editor/flask_editor/static/css/components/modal.css +59 -0
- scitex/fig/editor/flask_editor/static/css/components/sections.css +212 -0
- scitex/fig/editor/flask_editor/static/css/features/canvas.css +176 -0
- scitex/fig/editor/flask_editor/static/css/features/element-inspector.css +190 -0
- scitex/fig/editor/flask_editor/static/css/features/loading.css +59 -0
- scitex/fig/editor/flask_editor/static/css/features/overlay.css +45 -0
- scitex/fig/editor/flask_editor/static/css/features/panel-grid.css +95 -0
- scitex/fig/editor/flask_editor/static/css/features/selection.css +101 -0
- scitex/fig/editor/flask_editor/static/css/features/statistics.css +138 -0
- scitex/fig/editor/flask_editor/static/css/index.css +31 -0
- scitex/fig/editor/flask_editor/static/css/layout/container.css +7 -0
- scitex/fig/editor/flask_editor/static/css/layout/controls.css +56 -0
- scitex/fig/editor/flask_editor/static/css/layout/preview.css +78 -0
- scitex/fig/editor/flask_editor/static/js/alignment/axis.js +314 -0
- scitex/fig/editor/flask_editor/static/js/alignment/basic.js +107 -0
- scitex/fig/editor/flask_editor/static/js/alignment/distribute.js +54 -0
- scitex/fig/editor/flask_editor/static/js/canvas/canvas.js +172 -0
- scitex/fig/editor/flask_editor/static/js/canvas/dragging.js +258 -0
- scitex/fig/editor/flask_editor/static/js/canvas/resize.js +48 -0
- scitex/fig/editor/flask_editor/static/js/canvas/selection.js +71 -0
- scitex/fig/editor/flask_editor/static/js/core/api.js +288 -0
- scitex/fig/editor/flask_editor/static/js/core/state.js +143 -0
- scitex/fig/editor/flask_editor/static/js/core/utils.js +245 -0
- scitex/fig/editor/flask_editor/static/js/dev/element-inspector.js +992 -0
- scitex/fig/editor/flask_editor/static/js/editor/bbox.js +339 -0
- scitex/fig/editor/flask_editor/static/js/editor/element-drag.js +286 -0
- scitex/fig/editor/flask_editor/static/js/editor/overlay.js +371 -0
- scitex/fig/editor/flask_editor/static/js/editor/preview.js +293 -0
- scitex/fig/editor/flask_editor/static/js/main.js +426 -0
- scitex/fig/editor/flask_editor/static/js/shortcuts/context-menu.js +152 -0
- scitex/fig/editor/flask_editor/static/js/shortcuts/keyboard.js +265 -0
- scitex/fig/editor/flask_editor/static/js/ui/controls.js +184 -0
- scitex/fig/editor/flask_editor/static/js/ui/download.js +57 -0
- scitex/fig/editor/flask_editor/static/js/ui/help.js +100 -0
- scitex/fig/editor/flask_editor/static/js/ui/theme.js +34 -0
- scitex/fig/editor/flask_editor/templates/__init__.py +95 -5
- scitex/fig/editor/flask_editor/templates/_html.py +27 -9
- scitex/fig/editor/flask_editor/templates/_scripts.py +1928 -131
- scitex/fig/editor/flask_editor/templates/_styles.py +363 -51
- scitex/fig/io/_bundle.py +104 -19
- scitex/fts/README.md +262 -0
- scitex/fts/TODO.md +66 -0
- scitex/fts/__init__.py +90 -0
- scitex/fts/_bundle/README_IN_BUNDLE.md +102 -0
- scitex/fts/_bundle/_FTS.py +657 -0
- scitex/fts/_bundle/__init__.py +38 -0
- scitex/fts/_bundle/_children.py +216 -0
- scitex/fts/_bundle/_conversion/__init__.py +15 -0
- scitex/fts/_bundle/_conversion/_bundle2dict.py +44 -0
- scitex/fts/_bundle/_conversion/_dict2bundle.py +50 -0
- scitex/fts/_bundle/_dataclasses/_Axes.py +57 -0
- scitex/fts/_bundle/_dataclasses/_BBox.py +54 -0
- scitex/fts/_bundle/_dataclasses/_ColumnDef.py +72 -0
- scitex/fts/_bundle/_dataclasses/_DataFormat.py +40 -0
- scitex/fts/_bundle/_dataclasses/_DataInfo.py +135 -0
- scitex/fts/_bundle/_dataclasses/_DataSource.py +44 -0
- scitex/fts/_bundle/_dataclasses/_Node.py +319 -0
- scitex/fts/_bundle/_dataclasses/_NodeRefs.py +45 -0
- scitex/fts/_bundle/_dataclasses/_SizeMM.py +38 -0
- scitex/fts/_bundle/_dataclasses/__init__.py +35 -0
- scitex/fts/_bundle/_extractors/__init__.py +32 -0
- scitex/fts/_bundle/_extractors/_extract_bar.py +131 -0
- scitex/fts/_bundle/_extractors/_extract_line.py +71 -0
- scitex/fts/_bundle/_extractors/_extract_scatter.py +79 -0
- scitex/fts/_bundle/_loader.py +134 -0
- scitex/fts/_bundle/_mpl_helpers.py +389 -0
- scitex/fts/_bundle/_saver.py +269 -0
- scitex/fts/_bundle/_storage.py +200 -0
- scitex/fts/_bundle/_utils/__init__.py +55 -0
- scitex/fts/_bundle/_utils/_const.py +26 -0
- scitex/fts/_bundle/_utils/_errors.py +73 -0
- scitex/fts/_bundle/_utils/_generate.py +21 -0
- scitex/fts/_bundle/_utils/_types.py +76 -0
- scitex/fts/_bundle/_validation.py +434 -0
- scitex/fts/_bundle/_zipbundle.py +165 -0
- scitex/fts/_fig/__init__.py +22 -0
- scitex/fts/_fig/_backend/__init__.py +53 -0
- scitex/fts/_fig/_backend/_export.py +165 -0
- scitex/fts/_fig/_backend/_parser.py +188 -0
- scitex/fts/_fig/_backend/_render.py +538 -0
- scitex/fts/_fig/_composite.py +345 -0
- scitex/fts/_fig/_dataclasses/_ChannelEncoding.py +46 -0
- scitex/fts/_fig/_dataclasses/_Encoding.py +82 -0
- scitex/fts/_fig/_dataclasses/_Theme.py +441 -0
- scitex/fts/_fig/_dataclasses/_TraceEncoding.py +52 -0
- scitex/fts/_fig/_dataclasses/__init__.py +47 -0
- scitex/fts/_fig/_editor/__init__.py +14 -0
- scitex/fts/_fig/_editor/_cui/__init__.py +33 -0
- scitex/fts/_fig/_editor/_cui/_backend_detector.py +39 -0
- scitex/fts/_fig/_editor/_cui/_bundle_resolver.py +366 -0
- scitex/fts/_fig/_editor/_cui/_editor_launcher.py +175 -0
- scitex/fts/_fig/_editor/_cui/_manual_handler.py +52 -0
- scitex/fts/_fig/_editor/_cui/_panel_loader.py +246 -0
- scitex/fts/_fig/_editor/_cui/_path_resolver.py +66 -0
- scitex/fts/_fig/_editor/_defaults.py +300 -0
- scitex/fts/_fig/_editor/_gui/__init__.py +11 -0
- scitex/fts/_fig/_editor/_gui/_flask_editor/__init__.py +20 -0
- scitex/fts/_fig/_editor/_gui/_flask_editor/_bbox.py +1339 -0
- scitex/fts/_fig/_editor/_gui/_flask_editor/_core.py +1688 -0
- scitex/fts/_fig/_editor/_gui/_flask_editor/_plotter.py +664 -0
- scitex/fts/_fig/_editor/_gui/_flask_editor/_renderer.py +853 -0
- scitex/fts/_fig/_editor/_gui/_flask_editor/_utils.py +79 -0
- scitex/fts/_fig/_editor/_gui/_flask_editor/static/css/base/reset.css +41 -0
- scitex/fts/_fig/_editor/_gui/_flask_editor/static/css/base/typography.css +16 -0
- scitex/fts/_fig/_editor/_gui/_flask_editor/static/css/base/variables.css +85 -0
- scitex/fts/_fig/_editor/_gui/_flask_editor/static/css/components/buttons.css +217 -0
- scitex/fts/_fig/_editor/_gui/_flask_editor/static/css/components/context-menu.css +93 -0
- scitex/fts/_fig/_editor/_gui/_flask_editor/static/css/components/dropdown.css +57 -0
- scitex/fts/_fig/_editor/_gui/_flask_editor/static/css/components/forms.css +112 -0
- scitex/fts/_fig/_editor/_gui/_flask_editor/static/css/components/modal.css +59 -0
- scitex/fts/_fig/_editor/_gui/_flask_editor/static/css/components/sections.css +212 -0
- scitex/fts/_fig/_editor/_gui/_flask_editor/static/css/features/canvas.css +176 -0
- scitex/fts/_fig/_editor/_gui/_flask_editor/static/css/features/element-inspector.css +190 -0
- scitex/fts/_fig/_editor/_gui/_flask_editor/static/css/features/loading.css +59 -0
- scitex/fts/_fig/_editor/_gui/_flask_editor/static/css/features/overlay.css +45 -0
- scitex/fts/_fig/_editor/_gui/_flask_editor/static/css/features/panel-grid.css +95 -0
- scitex/fts/_fig/_editor/_gui/_flask_editor/static/css/features/selection.css +101 -0
- scitex/fts/_fig/_editor/_gui/_flask_editor/static/css/features/statistics.css +138 -0
- scitex/fts/_fig/_editor/_gui/_flask_editor/static/css/index.css +31 -0
- scitex/fts/_fig/_editor/_gui/_flask_editor/static/css/layout/container.css +7 -0
- scitex/fts/_fig/_editor/_gui/_flask_editor/static/css/layout/controls.css +56 -0
- scitex/fts/_fig/_editor/_gui/_flask_editor/static/css/layout/preview.css +78 -0
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- scitex/fts/_tables/_latex/_figure_exporter.py +153 -0
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- scitex/io/_load_modules/_pandas.py +6 -1
- scitex/io/_save.py +299 -1556
- scitex/io/_save_modules/__init__.py +76 -19
- scitex/io/_save_modules/_figure_utils.py +90 -0
- scitex/io/_save_modules/_image_csv.py +497 -0
- scitex/io/_save_modules/_legends.py +91 -0
- scitex/io/_save_modules/_pltz_bundle.py +356 -0
- scitex/io/_save_modules/_pltz_stx.py +536 -0
- scitex/io/_save_modules/_stx_bundle.py +104 -0
- scitex/io/_save_modules/_symlink.py +96 -0
- scitex/io/_save_modules/_yaml.py +1 -1
- scitex/io/_save_modules/_zarr.py +64 -18
- scitex/io/bundle/README.md +212 -0
- scitex/io/bundle/__init__.py +110 -0
- scitex/io/{_bundle.py → bundle/_core.py} +219 -89
- scitex/io/bundle/_nested.py +713 -0
- scitex/io/bundle/_types.py +74 -0
- scitex/io/bundle/_zip.py +487 -0
- scitex/io/utils/h5_to_zarr.py +1 -1
- scitex/logging/__init__.py +108 -13
- scitex/logging/_errors.py +508 -0
- scitex/logging/_formatters.py +30 -6
- scitex/logging/_warnings.py +261 -0
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- scitex/plt/_subplots/_AxisWrapper.py +6 -0
- scitex/plt/_subplots/_AxisWrapperMixins/_AdjustmentMixin/__init__.py +0 -0
- scitex/plt/_subplots/_AxisWrapperMixins/_AdjustmentMixin/_labels.py +0 -0
- scitex/plt/_subplots/_AxisWrapperMixins/_AdjustmentMixin/_metadata.py +0 -0
- scitex/plt/_subplots/_AxisWrapperMixins/_AdjustmentMixin/_visual.py +0 -0
- scitex/plt/_subplots/_AxisWrapperMixins/_MatplotlibPlotMixin/__init__.py +0 -0
- scitex/plt/_subplots/_AxisWrapperMixins/_MatplotlibPlotMixin/_base.py +0 -0
- scitex/plt/_subplots/_AxisWrapperMixins/_MatplotlibPlotMixin/_scientific.py +0 -0
- scitex/plt/_subplots/_AxisWrapperMixins/_MatplotlibPlotMixin/_statistical.py +0 -0
- scitex/plt/_subplots/_AxisWrapperMixins/_MatplotlibPlotMixin/_stx_aliases.py +0 -0
- scitex/plt/_subplots/_AxisWrapperMixins/_RawMatplotlibMixin.py +0 -0
- scitex/plt/_subplots/_AxisWrapperMixins/_SeabornMixin/__init__.py +0 -0
- scitex/plt/_subplots/_AxisWrapperMixins/_SeabornMixin/_base.py +0 -0
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- scitex/plt/_subplots/_AxisWrapperMixins/_UnitAwareMixin.py +112 -1
- scitex/plt/_subplots/_FigWrapper.py +15 -0
- scitex/plt/_subplots/_SubplotsWrapper.py +125 -489
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- scitex/plt/_subplots/_export_as_csv_formatters/_format_pcolormesh.py +66 -0
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- scitex/plt/_subplots/_export_as_csv_formatters/_format_stx_barh.py +0 -0
- scitex/plt/_subplots/_export_as_csv_formatters/_format_stx_errorbar.py +0 -0
- scitex/plt/_subplots/_export_as_csv_formatters/_format_stx_scatter.py +0 -0
- scitex/plt/_subplots/_export_as_csv_formatters/test_formatters.py +208 -0
- scitex/plt/_subplots/_fonts.py +71 -0
- scitex/plt/_subplots/_mm_layout.py +282 -0
- scitex/plt/gallery/__init__.py +99 -2
- scitex/plt/io/_layered_bundle.py +0 -0
- scitex/plt/styles/_plot_postprocess.py +3 -1
- scitex/plt/utils/_configure_mpl.py +16 -19
- scitex/repro/_RandomStateManager.py +13 -8
- scitex/resource/__init__.py +19 -1
- scitex/resource/_utils/_get_env_info.py +13 -25
- scitex/schema/__init__.py +149 -160
- scitex/schema/_encoding.py +273 -0
- scitex/schema/_figure_elements.py +406 -0
- scitex/schema/_plot.py +0 -0
- scitex/schema/_theme.py +360 -0
- scitex/schema/_validation.py +0 -98
- scitex/scholar/__init__.py +56 -14
- scitex/scholar/auth/ScholarAuthManager.py +1 -1
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- scitex/scholar/auth/providers/BaseAuthenticator.py +1 -1
- scitex/scholar/auth/providers/EZProxyAuthenticator.py +1 -1
- scitex/scholar/auth/providers/OpenAthensAuthenticator.py +1 -1
- scitex/scholar/auth/providers/ShibbolethAuthenticator.py +1 -1
- scitex/scholar/config/ScholarConfig.py +1 -1
- scitex/scholar/core/Scholar.py +1 -1
- scitex/session/_decorator.py +18 -16
- scitex/session/_lifecycle.py +9 -11
- scitex/session/template.py +9 -8
- scitex/sh/test_sh.py +72 -0
- scitex/sh/test_sh_simple.py +61 -0
- scitex/stats/__init__.py +221 -97
- scitex/stats/_schema.py +21 -22
- scitex/stats/descriptive/_circular.py +212 -351
- scitex/stats/descriptive/_describe.py +81 -132
- scitex/stats/descriptive/_nan.py +205 -433
- scitex/stats/descriptive/_real.py +127 -141
- scitex/str/_format_plot_text.py +5 -5
- scitex/str/_latex.py +26 -84
- scitex/str/_latex_fallback.py +53 -47
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- scitex/writer/tests/test_writer.py +361 -0
- scitex/writer/tests/test_writer_integration.py +303 -0
- {scitex-2.7.3.dist-info → scitex-2.10.0.dist-info}/METADATA +364 -181
- {scitex-2.7.3.dist-info → scitex-2.10.0.dist-info}/RECORD +479 -108
- scitex/fig/editor/_edit.py +0 -751
- scitex/scholar/docs/to_claude/guidelines/examples/mgmt/ARCHITECTURE_EXAMPLE.md +0 -905
- scitex/scholar/docs/to_claude/guidelines/examples/mgmt/BULLETIN_BOARD_EXAMPLE.md +0 -99
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- {scitex-2.7.3.dist-info → scitex-2.10.0.dist-info}/WHEEL +0 -0
- {scitex-2.7.3.dist-info → scitex-2.10.0.dist-info}/entry_points.txt +0 -0
- {scitex-2.7.3.dist-info → scitex-2.10.0.dist-info}/licenses/LICENSE +0 -0
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spath = str(panel_path)
|
|
44
|
+
if spath.endswith('.pltz') and not spath.endswith('.pltz.d'):
|
|
45
|
+
is_zip = panel_path.is_file()
|
|
46
|
+
else:
|
|
47
|
+
is_zip = False
|
|
48
|
+
|
|
49
|
+
if is_zip:
|
|
50
|
+
return _load_from_zip(panel_path)
|
|
51
|
+
else:
|
|
52
|
+
return _load_from_directory(panel_path)
|
|
53
|
+
|
|
54
|
+
|
|
55
|
+
def _load_from_zip(panel_path: Path) -> Optional[Dict[str, Any]]:
|
|
56
|
+
"""Load panel data from a .pltz zip file."""
|
|
57
|
+
from PIL import Image
|
|
58
|
+
from scitex.io.bundle import ZipBundle
|
|
59
|
+
|
|
60
|
+
if not panel_path.exists():
|
|
61
|
+
return None
|
|
62
|
+
|
|
63
|
+
try:
|
|
64
|
+
with ZipBundle(panel_path, mode="r") as zb:
|
|
65
|
+
# Load spec.json for metadata
|
|
66
|
+
try:
|
|
67
|
+
metadata = zb.read_json("spec.json")
|
|
68
|
+
except FileNotFoundError:
|
|
69
|
+
metadata = {}
|
|
70
|
+
|
|
71
|
+
# Load style.json if exists
|
|
72
|
+
try:
|
|
73
|
+
style = zb.read_json("style.json")
|
|
74
|
+
metadata["style"] = style
|
|
75
|
+
except FileNotFoundError:
|
|
76
|
+
pass
|
|
77
|
+
|
|
78
|
+
# Find and read PNG
|
|
79
|
+
png_bytes = None
|
|
80
|
+
for name in zb.namelist():
|
|
81
|
+
if name.endswith('.png') and '_hitmap' not in name and '_overview' not in name:
|
|
82
|
+
if 'exports/' in name:
|
|
83
|
+
png_bytes = zb.read_bytes(name)
|
|
84
|
+
break
|
|
85
|
+
|
|
86
|
+
# If no PNG in exports/, try root level
|
|
87
|
+
if not png_bytes:
|
|
88
|
+
for name in zb.namelist():
|
|
89
|
+
if name.endswith('.png') and '_hitmap' not in name and '_overview' not in name:
|
|
90
|
+
png_bytes = zb.read_bytes(name)
|
|
91
|
+
break
|
|
92
|
+
|
|
93
|
+
# Get image size
|
|
94
|
+
img_size = None
|
|
95
|
+
if png_bytes:
|
|
96
|
+
img = Image.open(io.BytesIO(png_bytes))
|
|
97
|
+
img_size = {"width": img.size[0], "height": img.size[1]}
|
|
98
|
+
img.close()
|
|
99
|
+
|
|
100
|
+
# Find and read hitmap
|
|
101
|
+
hitmap_bytes = None
|
|
102
|
+
for name in zb.namelist():
|
|
103
|
+
if '_hitmap.png' in name:
|
|
104
|
+
hitmap_bytes = zb.read_bytes(name)
|
|
105
|
+
break
|
|
106
|
+
|
|
107
|
+
# Load geometry_px.json if available
|
|
108
|
+
geometry_data = None
|
|
109
|
+
try:
|
|
110
|
+
geometry_data = zb.read_json("cache/geometry_px.json")
|
|
111
|
+
except FileNotFoundError:
|
|
112
|
+
pass
|
|
113
|
+
|
|
114
|
+
return {
|
|
115
|
+
"metadata": metadata,
|
|
116
|
+
"png_bytes": png_bytes,
|
|
117
|
+
"hitmap_bytes": hitmap_bytes,
|
|
118
|
+
"img_size": img_size,
|
|
119
|
+
"geometry_data": geometry_data,
|
|
120
|
+
"is_zip": True,
|
|
121
|
+
}
|
|
122
|
+
except Exception as e:
|
|
123
|
+
print(f"Error loading panel zip {panel_path}: {e}")
|
|
124
|
+
return None
|
|
125
|
+
|
|
126
|
+
|
|
127
|
+
def _load_from_directory(panel_path: Path) -> Optional[Dict[str, Any]]:
|
|
128
|
+
"""Load panel data from a .pltz.d directory."""
|
|
129
|
+
import scitex as stx
|
|
130
|
+
|
|
131
|
+
panel_dir = panel_path
|
|
132
|
+
if not panel_dir.exists():
|
|
133
|
+
return None
|
|
134
|
+
|
|
135
|
+
# Check for layered vs legacy format
|
|
136
|
+
spec_path = panel_dir / "spec.json"
|
|
137
|
+
if spec_path.exists():
|
|
138
|
+
return _load_layered_directory(panel_dir)
|
|
139
|
+
else:
|
|
140
|
+
return _load_legacy_directory(panel_dir)
|
|
141
|
+
|
|
142
|
+
|
|
143
|
+
def _load_layered_directory(panel_dir: Path) -> Dict[str, Any]:
|
|
144
|
+
"""Load panel data from layered format directory."""
|
|
145
|
+
import scitex as stx
|
|
146
|
+
from scitex.plt.io import load_layered_pltz_bundle
|
|
147
|
+
|
|
148
|
+
bundle_data = load_layered_pltz_bundle(panel_dir)
|
|
149
|
+
metadata = bundle_data.get("merged", {})
|
|
150
|
+
|
|
151
|
+
# Find CSV
|
|
152
|
+
csv_data = None
|
|
153
|
+
for f in panel_dir.glob("*.csv"):
|
|
154
|
+
csv_data = stx.io.load(f)
|
|
155
|
+
break
|
|
156
|
+
|
|
157
|
+
# Find exports - prefer PNG over SVG (PIL can't open SVG)
|
|
158
|
+
png_path = None
|
|
159
|
+
svg_path = None
|
|
160
|
+
hitmap_path = None
|
|
161
|
+
exports_dir = panel_dir / "exports"
|
|
162
|
+
if exports_dir.exists():
|
|
163
|
+
for f in exports_dir.iterdir():
|
|
164
|
+
name = f.name
|
|
165
|
+
if name.endswith('_hitmap.png'):
|
|
166
|
+
hitmap_path = f
|
|
167
|
+
elif name.endswith('.png') and '_hitmap' not in name and '_overview' not in name:
|
|
168
|
+
png_path = f
|
|
169
|
+
elif name.endswith('.svg') and '_hitmap' not in name and svg_path is None:
|
|
170
|
+
svg_path = f
|
|
171
|
+
|
|
172
|
+
if png_path is None:
|
|
173
|
+
png_path = svg_path
|
|
174
|
+
|
|
175
|
+
# Load geometry_px.json if available
|
|
176
|
+
geometry_data = None
|
|
177
|
+
geometry_path = panel_dir / "cache" / "geometry_px.json"
|
|
178
|
+
if geometry_path.exists():
|
|
179
|
+
with open(geometry_path) as f:
|
|
180
|
+
geometry_data = json_module.load(f)
|
|
181
|
+
|
|
182
|
+
return {
|
|
183
|
+
"json_path": panel_dir / "spec.json",
|
|
184
|
+
"metadata": metadata,
|
|
185
|
+
"csv_data": csv_data,
|
|
186
|
+
"png_path": png_path,
|
|
187
|
+
"hitmap_path": hitmap_path,
|
|
188
|
+
"geometry_data": geometry_data,
|
|
189
|
+
"is_zip": False,
|
|
190
|
+
}
|
|
191
|
+
|
|
192
|
+
|
|
193
|
+
def _load_legacy_directory(panel_dir: Path) -> Optional[Dict[str, Any]]:
|
|
194
|
+
"""Load panel data from legacy format directory."""
|
|
195
|
+
import scitex as stx
|
|
196
|
+
|
|
197
|
+
json_path = None
|
|
198
|
+
csv_data = None
|
|
199
|
+
png_path = None
|
|
200
|
+
hitmap_path = None
|
|
201
|
+
|
|
202
|
+
for f in panel_dir.iterdir():
|
|
203
|
+
name = f.name
|
|
204
|
+
if name.endswith('.json') and not name.endswith('.manual.json'):
|
|
205
|
+
json_path = f
|
|
206
|
+
elif name.endswith('.csv'):
|
|
207
|
+
csv_data = stx.io.load(f)
|
|
208
|
+
elif name.endswith('_hitmap.png'):
|
|
209
|
+
hitmap_path = f
|
|
210
|
+
elif name.endswith('.svg') and '_hitmap' not in name:
|
|
211
|
+
png_path = f
|
|
212
|
+
elif name.endswith('.png') and '_hitmap' not in name and '_overview' not in name:
|
|
213
|
+
if png_path is None:
|
|
214
|
+
png_path = f
|
|
215
|
+
|
|
216
|
+
if json_path is None:
|
|
217
|
+
return None
|
|
218
|
+
|
|
219
|
+
with open(json_path, 'r') as f:
|
|
220
|
+
metadata = json_module.load(f)
|
|
221
|
+
|
|
222
|
+
return {
|
|
223
|
+
"json_path": json_path,
|
|
224
|
+
"metadata": metadata,
|
|
225
|
+
"csv_data": csv_data,
|
|
226
|
+
"png_path": png_path,
|
|
227
|
+
"hitmap_path": hitmap_path,
|
|
228
|
+
"is_zip": False,
|
|
229
|
+
}
|
|
230
|
+
|
|
231
|
+
|
|
232
|
+
# EOF
|
|
@@ -0,0 +1,67 @@
|
|
|
1
|
+
#!/usr/bin/env python3
|
|
2
|
+
# -*- coding: utf-8 -*-
|
|
3
|
+
# Timestamp: "2025-12-14 (ywatanabe)"
|
|
4
|
+
# File: /home/ywatanabe/proj/scitex-code/src/scitex/fig/editor/edit/path_resolver.py
|
|
5
|
+
|
|
6
|
+
"""Basic path resolution for figure files."""
|
|
7
|
+
|
|
8
|
+
from pathlib import Path
|
|
9
|
+
from typing import Optional, Tuple
|
|
10
|
+
|
|
11
|
+
__all__ = ["resolve_figure_paths"]
|
|
12
|
+
|
|
13
|
+
|
|
14
|
+
def resolve_figure_paths(path: Path) -> Tuple[Path, Optional[Path], Optional[Path]]:
|
|
15
|
+
"""
|
|
16
|
+
Resolve JSON, CSV, and PNG paths from any input file path.
|
|
17
|
+
|
|
18
|
+
Handles two patterns:
|
|
19
|
+
1. Flat (sibling): path/to/figure.{json,csv,png}
|
|
20
|
+
2. Organized (subdirs): path/to/{json,csv,png}/figure.{ext}
|
|
21
|
+
|
|
22
|
+
Parameters
|
|
23
|
+
----------
|
|
24
|
+
path : Path
|
|
25
|
+
Input path (can be JSON, CSV, or PNG)
|
|
26
|
+
|
|
27
|
+
Returns
|
|
28
|
+
-------
|
|
29
|
+
tuple
|
|
30
|
+
(json_path, csv_path, png_path) - csv_path/png_path may be None if not found
|
|
31
|
+
"""
|
|
32
|
+
path = Path(path)
|
|
33
|
+
stem = path.stem
|
|
34
|
+
parent = path.parent
|
|
35
|
+
|
|
36
|
+
# Check if this is organized pattern (parent is json/, csv/, png/)
|
|
37
|
+
if parent.name in ("json", "csv", "png"):
|
|
38
|
+
base_dir = parent.parent
|
|
39
|
+
json_path = base_dir / "json" / f"{stem}.json"
|
|
40
|
+
csv_path = base_dir / "csv" / f"{stem}.csv"
|
|
41
|
+
png_path = base_dir / "png" / f"{stem}.png"
|
|
42
|
+
else:
|
|
43
|
+
# Flat pattern - sibling files
|
|
44
|
+
json_path = parent / f"{stem}.json"
|
|
45
|
+
csv_path = parent / f"{stem}.csv"
|
|
46
|
+
png_path = parent / f"{stem}.png"
|
|
47
|
+
|
|
48
|
+
# If input was .manual.json, get base json
|
|
49
|
+
if stem.endswith(".manual"):
|
|
50
|
+
base_stem = stem[:-7] # Remove '.manual'
|
|
51
|
+
if parent.name == "json":
|
|
52
|
+
json_path = parent / f"{base_stem}.json"
|
|
53
|
+
csv_path = parent.parent / "csv" / f"{base_stem}.csv"
|
|
54
|
+
png_path = parent.parent / "png" / f"{base_stem}.png"
|
|
55
|
+
else:
|
|
56
|
+
json_path = parent / f"{base_stem}.json"
|
|
57
|
+
csv_path = parent / f"{base_stem}.csv"
|
|
58
|
+
png_path = parent / f"{base_stem}.png"
|
|
59
|
+
|
|
60
|
+
return (
|
|
61
|
+
json_path,
|
|
62
|
+
csv_path if csv_path.exists() else None,
|
|
63
|
+
png_path if png_path.exists() else None,
|
|
64
|
+
)
|
|
65
|
+
|
|
66
|
+
|
|
67
|
+
# EOF
|
|
@@ -290,6 +290,29 @@ def extract_bboxes_multi(
|
|
|
290
290
|
legend = ax.get_legend()
|
|
291
291
|
if legend:
|
|
292
292
|
get_element_bbox(legend, "legend", ax_id, ax)
|
|
293
|
+
# Add element_type for drag detection
|
|
294
|
+
if f"{ax_id}_legend" in bboxes:
|
|
295
|
+
bboxes[f"{ax_id}_legend"]["element_type"] = "legend"
|
|
296
|
+
bboxes[f"{ax_id}_legend"]["draggable"] = True
|
|
297
|
+
|
|
298
|
+
# Get panel letter (text annotations like A, B, C)
|
|
299
|
+
import re
|
|
300
|
+
panel_letter_pattern = re.compile(r'^[A-Z]\.?$|^\([A-Za-z]\)$')
|
|
301
|
+
for idx, text_artist in enumerate(ax.texts):
|
|
302
|
+
text_content = text_artist.get_text().strip()
|
|
303
|
+
if text_content and panel_letter_pattern.match(text_content):
|
|
304
|
+
name = f"panel_letter_{text_content.replace('.', '').replace('(', '').replace(')', '')}"
|
|
305
|
+
get_element_bbox(text_artist, name, ax_id, ax)
|
|
306
|
+
full_name = f"{ax_id}_{name}"
|
|
307
|
+
if full_name in bboxes:
|
|
308
|
+
bboxes[full_name]["element_type"] = "panel_letter"
|
|
309
|
+
bboxes[full_name]["draggable"] = True
|
|
310
|
+
bboxes[full_name]["text"] = text_content
|
|
311
|
+
# Get position in axes coordinates (0-1)
|
|
312
|
+
pos = text_artist.get_position()
|
|
313
|
+
transform = text_artist.get_transform()
|
|
314
|
+
if transform == ax.transAxes:
|
|
315
|
+
bboxes[full_name]["axes_position"] = {"x": pos[0], "y": pos[1]}
|
|
293
316
|
|
|
294
317
|
# Get trace (line) bboxes
|
|
295
318
|
_extract_trace_bboxes_for_axis(
|