scitex 2.4.3__py3-none-any.whl → 2.7.0__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- scitex/__init__.py +19 -8
- scitex/__main__.py +2 -1
- scitex/__version__.py +1 -1
- scitex/_optional_deps.py +13 -20
- scitex/ai/__init__.py +5 -0
- scitex/ai/_gen_ai/_Anthropic.py +3 -1
- scitex/ai/_gen_ai/_BaseGenAI.py +3 -2
- scitex/ai/_gen_ai/_DeepSeek.py +1 -1
- scitex/ai/_gen_ai/_Google.py +3 -2
- scitex/ai/_gen_ai/_Llama.py +4 -2
- scitex/ai/_gen_ai/_OpenAI.py +3 -1
- scitex/ai/_gen_ai/_PARAMS.py +1 -0
- scitex/ai/_gen_ai/_Perplexity.py +3 -1
- scitex/ai/_gen_ai/__init__.py +1 -0
- scitex/ai/_gen_ai/_format_output_func.py +3 -1
- scitex/ai/classification/CrossValidationExperiment.py +8 -14
- scitex/ai/classification/examples/timeseries_cv_demo.py +128 -112
- scitex/ai/classification/reporters/_BaseClassificationReporter.py +2 -0
- scitex/ai/classification/reporters/_ClassificationReporter.py +30 -45
- scitex/ai/classification/reporters/_MultiClassificationReporter.py +8 -11
- scitex/ai/classification/reporters/_SingleClassificationReporter.py +126 -182
- scitex/ai/classification/reporters/__init__.py +1 -1
- scitex/ai/classification/reporters/reporter_utils/_Plotter.py +213 -119
- scitex/ai/classification/reporters/reporter_utils/__init__.py +28 -36
- scitex/ai/classification/reporters/reporter_utils/aggregation.py +125 -143
- scitex/ai/classification/reporters/reporter_utils/data_models.py +128 -120
- scitex/ai/classification/reporters/reporter_utils/reporting.py +507 -340
- scitex/ai/classification/reporters/reporter_utils/storage.py +4 -1
- scitex/ai/classification/reporters/reporter_utils/validation.py +141 -154
- scitex/ai/classification/timeseries/_TimeSeriesBlockingSplit.py +204 -129
- scitex/ai/classification/timeseries/_TimeSeriesCalendarSplit.py +215 -171
- scitex/ai/classification/timeseries/_TimeSeriesMetadata.py +17 -17
- scitex/ai/classification/timeseries/_TimeSeriesSlidingWindowSplit.py +67 -143
- scitex/ai/classification/timeseries/_TimeSeriesSlidingWindowSplit_v01-not-using-n_splits.py +67 -143
- scitex/ai/classification/timeseries/_TimeSeriesStrategy.py +12 -13
- scitex/ai/classification/timeseries/_TimeSeriesStratifiedSplit.py +231 -144
- scitex/ai/classification/timeseries/__init__.py +2 -4
- scitex/ai/classification/timeseries/_normalize_timestamp.py +3 -0
- scitex/ai/clustering/_pca.py +0 -1
- scitex/ai/clustering/_umap.py +1 -2
- scitex/ai/feature_extraction/__init__.py +10 -8
- scitex/ai/feature_extraction/vit.py +0 -1
- scitex/ai/feature_selection/feature_selection.py +3 -8
- scitex/ai/metrics/_calc_conf_mat.py +2 -0
- scitex/ai/metrics/_calc_feature_importance.py +3 -7
- scitex/ai/metrics/_calc_pre_rec_auc.py +5 -5
- scitex/ai/metrics/_calc_roc_auc.py +4 -2
- scitex/ai/metrics/_calc_seizure_prediction_metrics.py +35 -20
- scitex/ai/metrics/_calc_silhouette_score.py +1 -3
- scitex/ai/optim/Ranger_Deep_Learning_Optimizer/ranger/ranger.py +0 -3
- scitex/ai/optim/Ranger_Deep_Learning_Optimizer/ranger/ranger2020.py +0 -3
- scitex/ai/optim/Ranger_Deep_Learning_Optimizer/ranger/ranger913A.py +0 -3
- scitex/ai/optim/_optimizers.py +1 -1
- scitex/ai/plt/__init__.py +6 -1
- scitex/ai/plt/_plot_feature_importance.py +1 -3
- scitex/ai/plt/_plot_learning_curve.py +9 -24
- scitex/ai/plt/_plot_optuna_study.py +4 -3
- scitex/ai/plt/_plot_pre_rec_curve.py +9 -15
- scitex/ai/plt/_plot_roc_curve.py +6 -8
- scitex/ai/plt/_stx_conf_mat.py +121 -122
- scitex/ai/sampling/undersample.py +3 -2
- scitex/ai/sklearn/__init__.py +2 -2
- scitex/ai/training/_LearningCurveLogger.py +23 -10
- scitex/ai/utils/_check_params.py +0 -1
- scitex/benchmark/__init__.py +15 -25
- scitex/benchmark/benchmark.py +124 -117
- scitex/benchmark/monitor.py +117 -107
- scitex/benchmark/profiler.py +61 -58
- scitex/bridge/__init__.py +110 -0
- scitex/bridge/_helpers.py +149 -0
- scitex/bridge/_plt_vis.py +529 -0
- scitex/bridge/_protocol.py +283 -0
- scitex/bridge/_stats_plt.py +261 -0
- scitex/bridge/_stats_vis.py +265 -0
- scitex/browser/__init__.py +0 -2
- scitex/browser/auth/__init__.py +0 -0
- scitex/browser/auth/google.py +16 -11
- scitex/browser/automation/CookieHandler.py +2 -3
- scitex/browser/collaboration/__init__.py +3 -0
- scitex/browser/collaboration/auth_helpers.py +3 -1
- scitex/browser/collaboration/collaborative_agent.py +2 -0
- scitex/browser/collaboration/interactive_panel.py +2 -2
- scitex/browser/collaboration/shared_session.py +20 -11
- scitex/browser/collaboration/standard_interactions.py +1 -0
- scitex/browser/core/BrowserMixin.py +12 -30
- scitex/browser/core/ChromeProfileManager.py +9 -24
- scitex/browser/debugging/_browser_logger.py +15 -25
- scitex/browser/debugging/_failure_capture.py +9 -2
- scitex/browser/debugging/_highlight_element.py +15 -6
- scitex/browser/debugging/_show_grid.py +5 -6
- scitex/browser/debugging/_sync_session.py +4 -3
- scitex/browser/debugging/_test_monitor.py +14 -5
- scitex/browser/debugging/_visual_cursor.py +46 -35
- scitex/browser/interaction/click_center.py +4 -3
- scitex/browser/interaction/click_with_fallbacks.py +7 -10
- scitex/browser/interaction/close_popups.py +79 -66
- scitex/browser/interaction/fill_with_fallbacks.py +8 -8
- scitex/browser/pdf/__init__.py +3 -1
- scitex/browser/pdf/click_download_for_chrome_pdf_viewer.py +11 -10
- scitex/browser/pdf/detect_chrome_pdf_viewer.py +3 -6
- scitex/browser/remote/CaptchaHandler.py +109 -96
- scitex/browser/remote/ZenRowsAPIClient.py +91 -97
- scitex/browser/remote/ZenRowsBrowserManager.py +138 -112
- scitex/browser/stealth/HumanBehavior.py +4 -9
- scitex/browser/stealth/StealthManager.py +11 -26
- scitex/capture/__init__.py +17 -17
- scitex/capture/__main__.py +2 -3
- scitex/capture/capture.py +23 -51
- scitex/capture/cli.py +14 -39
- scitex/capture/gif.py +5 -9
- scitex/capture/mcp_server.py +7 -20
- scitex/capture/session.py +4 -3
- scitex/capture/utils.py +18 -53
- scitex/cli/__init__.py +1 -1
- scitex/cli/cloud.py +158 -116
- scitex/cli/config.py +224 -0
- scitex/cli/main.py +41 -40
- scitex/cli/scholar.py +60 -27
- scitex/cli/security.py +14 -20
- scitex/cli/web.py +87 -90
- scitex/cli/writer.py +51 -45
- scitex/cloud/__init__.py +14 -11
- scitex/cloud/_matplotlib_hook.py +6 -6
- scitex/config/README.md +313 -0
- scitex/config/{PriorityConfig.py → _PriorityConfig.py} +114 -17
- scitex/config/_ScitexConfig.py +319 -0
- scitex/config/__init__.py +41 -9
- scitex/config/_paths.py +325 -0
- scitex/config/default.yaml +81 -0
- scitex/context/_suppress_output.py +2 -3
- scitex/db/_BaseMixins/_BaseBackupMixin.py +3 -1
- scitex/db/_BaseMixins/_BaseBatchMixin.py +3 -1
- scitex/db/_BaseMixins/_BaseBlobMixin.py +3 -1
- scitex/db/_BaseMixins/_BaseImportExportMixin.py +1 -3
- scitex/db/_BaseMixins/_BaseIndexMixin.py +3 -1
- scitex/db/_BaseMixins/_BaseMaintenanceMixin.py +1 -3
- scitex/db/_BaseMixins/_BaseQueryMixin.py +3 -1
- scitex/db/_BaseMixins/_BaseRowMixin.py +3 -1
- scitex/db/_BaseMixins/_BaseTableMixin.py +3 -1
- scitex/db/_BaseMixins/_BaseTransactionMixin.py +1 -3
- scitex/db/_BaseMixins/__init__.py +1 -1
- scitex/db/__init__.py +9 -1
- scitex/db/__main__.py +8 -21
- scitex/db/_check_health.py +15 -31
- scitex/db/_delete_duplicates.py +7 -4
- scitex/db/_inspect.py +22 -38
- scitex/db/_inspect_optimized.py +89 -85
- scitex/db/_postgresql/_PostgreSQL.py +0 -1
- scitex/db/_postgresql/_PostgreSQLMixins/_BlobMixin.py +3 -1
- scitex/db/_postgresql/_PostgreSQLMixins/_ConnectionMixin.py +1 -3
- scitex/db/_postgresql/_PostgreSQLMixins/_ImportExportMixin.py +1 -3
- scitex/db/_postgresql/_PostgreSQLMixins/_MaintenanceMixin.py +1 -4
- scitex/db/_postgresql/_PostgreSQLMixins/_QueryMixin.py +3 -3
- scitex/db/_postgresql/_PostgreSQLMixins/_RowMixin.py +3 -1
- scitex/db/_postgresql/_PostgreSQLMixins/_TransactionMixin.py +1 -3
- scitex/db/_postgresql/__init__.py +1 -1
- scitex/db/_sqlite3/_SQLite3.py +2 -4
- scitex/db/_sqlite3/_SQLite3Mixins/_ArrayMixin.py +11 -12
- scitex/db/_sqlite3/_SQLite3Mixins/_ArrayMixin_v01-need-_hash-col.py +19 -14
- scitex/db/_sqlite3/_SQLite3Mixins/_BatchMixin.py +3 -1
- scitex/db/_sqlite3/_SQLite3Mixins/_BlobMixin.py +7 -7
- scitex/db/_sqlite3/_SQLite3Mixins/_ColumnMixin.py +118 -111
- scitex/db/_sqlite3/_SQLite3Mixins/_ConnectionMixin.py +8 -10
- scitex/db/_sqlite3/_SQLite3Mixins/_GitMixin.py +17 -45
- scitex/db/_sqlite3/_SQLite3Mixins/_ImportExportMixin.py +1 -3
- scitex/db/_sqlite3/_SQLite3Mixins/_IndexMixin.py +3 -1
- scitex/db/_sqlite3/_SQLite3Mixins/_QueryMixin.py +3 -4
- scitex/db/_sqlite3/_SQLite3Mixins/_RowMixin.py +9 -9
- scitex/db/_sqlite3/_SQLite3Mixins/_TableMixin.py +18 -11
- scitex/db/_sqlite3/_SQLite3Mixins/__init__.py +1 -0
- scitex/db/_sqlite3/__init__.py +1 -1
- scitex/db/_sqlite3/_delete_duplicates.py +13 -11
- scitex/decorators/__init__.py +29 -4
- scitex/decorators/_auto_order.py +43 -43
- scitex/decorators/_batch_fn.py +12 -6
- scitex/decorators/_cache_disk.py +8 -9
- scitex/decorators/_cache_disk_async.py +8 -7
- scitex/decorators/_combined.py +19 -13
- scitex/decorators/_converters.py +16 -3
- scitex/decorators/_deprecated.py +32 -22
- scitex/decorators/_numpy_fn.py +18 -4
- scitex/decorators/_pandas_fn.py +17 -5
- scitex/decorators/_signal_fn.py +17 -3
- scitex/decorators/_torch_fn.py +32 -15
- scitex/decorators/_xarray_fn.py +23 -9
- scitex/dev/_analyze_code_flow.py +0 -2
- scitex/dict/_DotDict.py +15 -19
- scitex/dict/_flatten.py +1 -0
- scitex/dict/_listed_dict.py +1 -0
- scitex/dict/_pop_keys.py +1 -0
- scitex/dict/_replace.py +1 -0
- scitex/dict/_safe_merge.py +1 -0
- scitex/dict/_to_str.py +2 -3
- scitex/dsp/__init__.py +13 -4
- scitex/dsp/_crop.py +3 -1
- scitex/dsp/_detect_ripples.py +3 -1
- scitex/dsp/_modulation_index.py +3 -1
- scitex/dsp/_time.py +3 -1
- scitex/dsp/_wavelet.py +0 -1
- scitex/dsp/example.py +0 -5
- scitex/dsp/filt.py +4 -0
- scitex/dsp/utils/__init__.py +4 -1
- scitex/dsp/utils/pac.py +3 -3
- scitex/dt/_normalize_timestamp.py +4 -1
- scitex/errors.py +3 -6
- scitex/etc/__init__.py +1 -1
- scitex/gen/_DimHandler.py +6 -6
- scitex/gen/__init__.py +5 -1
- scitex/gen/_deprecated_close.py +1 -0
- scitex/gen/_deprecated_start.py +5 -3
- scitex/gen/_detect_environment.py +44 -41
- scitex/gen/_detect_notebook_path.py +51 -47
- scitex/gen/_embed.py +1 -1
- scitex/gen/_get_notebook_path.py +81 -62
- scitex/gen/_inspect_module.py +0 -1
- scitex/gen/_norm.py +16 -7
- scitex/gen/_norm_cache.py +78 -65
- scitex/gen/_print_config.py +0 -3
- scitex/gen/_src.py +2 -3
- scitex/gen/_title_case.py +3 -2
- scitex/gen/_to_even.py +8 -8
- scitex/gen/_transpose.py +3 -3
- scitex/gen/misc.py +0 -3
- scitex/gists/_SigMacro_processFigure_S.py +2 -2
- scitex/gists/_SigMacro_toBlue.py +2 -2
- scitex/gists/__init__.py +4 -1
- scitex/git/_branch.py +19 -11
- scitex/git/_clone.py +23 -15
- scitex/git/_commit.py +10 -12
- scitex/git/_init.py +15 -38
- scitex/git/_remote.py +9 -3
- scitex/git/_result.py +3 -0
- scitex/git/_retry.py +2 -5
- scitex/git/_types.py +4 -0
- scitex/git/_validation.py +8 -8
- scitex/git/_workflow.py +4 -4
- scitex/io/__init__.py +2 -1
- scitex/io/_glob.py +2 -2
- scitex/io/_json2md.py +3 -3
- scitex/io/_load.py +11 -8
- scitex/io/_load_cache.py +71 -71
- scitex/io/_load_configs.py +2 -3
- scitex/io/_load_modules/_H5Explorer.py +6 -12
- scitex/io/_load_modules/_ZarrExplorer.py +3 -3
- scitex/io/_load_modules/_bibtex.py +62 -63
- scitex/io/_load_modules/_canvas.py +166 -0
- scitex/io/_load_modules/_catboost.py +7 -2
- scitex/io/_load_modules/_hdf5.py +2 -0
- scitex/io/_load_modules/_image.py +5 -1
- scitex/io/_load_modules/_matlab.py +3 -1
- scitex/io/_load_modules/_optuna.py +0 -1
- scitex/io/_load_modules/_pdf.py +38 -29
- scitex/io/_load_modules/_sqlite3.py +1 -0
- scitex/io/_load_modules/_txt.py +2 -0
- scitex/io/_load_modules/_xml.py +9 -9
- scitex/io/_load_modules/_zarr.py +12 -10
- scitex/io/_metadata.py +76 -37
- scitex/io/_qr_utils.py +18 -13
- scitex/io/_save.py +228 -63
- scitex/io/_save_modules/__init__.py +7 -2
- scitex/io/_save_modules/_bibtex.py +66 -61
- scitex/io/_save_modules/_canvas.py +355 -0
- scitex/io/_save_modules/_catboost.py +2 -2
- scitex/io/_save_modules/_csv.py +4 -4
- scitex/io/_save_modules/_excel.py +5 -9
- scitex/io/_save_modules/_hdf5.py +9 -21
- scitex/io/_save_modules/_html.py +5 -5
- scitex/io/_save_modules/_image.py +105 -8
- scitex/io/_save_modules/_joblib.py +2 -2
- scitex/io/_save_modules/_json.py +51 -6
- scitex/io/_save_modules/_listed_dfs_as_csv.py +2 -1
- scitex/io/_save_modules/_listed_scalars_as_csv.py +2 -1
- scitex/io/_save_modules/_matlab.py +2 -2
- scitex/io/_save_modules/_numpy.py +6 -8
- scitex/io/_save_modules/_pickle.py +4 -4
- scitex/io/_save_modules/_plotly.py +3 -3
- scitex/io/_save_modules/_tex.py +23 -25
- scitex/io/_save_modules/_text.py +2 -2
- scitex/io/_save_modules/_yaml.py +9 -9
- scitex/io/_save_modules/_zarr.py +15 -15
- scitex/io/utils/__init__.py +2 -1
- scitex/io/utils/h5_to_zarr.py +173 -155
- scitex/linalg/__init__.py +1 -1
- scitex/linalg/_geometric_median.py +4 -3
- scitex/logging/_Tee.py +5 -7
- scitex/logging/__init__.py +18 -19
- scitex/logging/_config.py +4 -1
- scitex/logging/_context.py +6 -5
- scitex/logging/_formatters.py +2 -3
- scitex/logging/_handlers.py +19 -20
- scitex/logging/_levels.py +9 -17
- scitex/logging/_logger.py +74 -15
- scitex/logging/_print_capture.py +17 -17
- scitex/nn/_BNet.py +1 -3
- scitex/nn/_Filters.py +6 -2
- scitex/nn/_ModulationIndex.py +3 -1
- scitex/nn/_PAC.py +3 -2
- scitex/nn/_PSD.py +0 -1
- scitex/nn/__init__.py +16 -3
- scitex/path/_clean.py +10 -8
- scitex/path/_find.py +1 -1
- scitex/path/_get_spath.py +1 -2
- scitex/path/_mk_spath.py +1 -1
- scitex/path/_symlink.py +5 -10
- scitex/pd/__init__.py +4 -1
- scitex/pd/_force_df.py +24 -24
- scitex/pd/_get_unique.py +1 -0
- scitex/pd/_merge_columns.py +1 -1
- scitex/pd/_round.py +11 -7
- scitex/pd/_to_xy.py +0 -1
- scitex/plt/REQUESTS.md +191 -0
- scitex/plt/__init__.py +185 -87
- scitex/plt/_subplots/_AxesWrapper.py +22 -6
- scitex/plt/_subplots/_AxisWrapper.py +100 -39
- scitex/plt/_subplots/_AxisWrapperMixins/_AdjustmentMixin.py +74 -52
- scitex/plt/_subplots/_AxisWrapperMixins/_MatplotlibPlotMixin.py +183 -73
- scitex/plt/_subplots/_AxisWrapperMixins/_SeabornMixin.py +61 -45
- scitex/plt/_subplots/_AxisWrapperMixins/_TrackingMixin.py +26 -14
- scitex/plt/_subplots/_AxisWrapperMixins/_UnitAwareMixin.py +80 -73
- scitex/plt/_subplots/_FigWrapper.py +93 -60
- scitex/plt/_subplots/_SubplotsWrapper.py +135 -68
- scitex/plt/_subplots/__init__.py +10 -0
- scitex/plt/_subplots/_export_as_csv.py +89 -47
- scitex/plt/_subplots/_export_as_csv_formatters/__init__.py +1 -0
- scitex/plt/_subplots/_export_as_csv_formatters/_format_annotate.py +6 -4
- scitex/plt/_subplots/_export_as_csv_formatters/_format_bar.py +88 -38
- scitex/plt/_subplots/_export_as_csv_formatters/_format_barh.py +25 -31
- scitex/plt/_subplots/_export_as_csv_formatters/_format_boxplot.py +53 -23
- scitex/plt/_subplots/_export_as_csv_formatters/_format_contour.py +38 -25
- scitex/plt/_subplots/_export_as_csv_formatters/_format_contourf.py +17 -9
- scitex/plt/_subplots/_export_as_csv_formatters/_format_errorbar.py +70 -124
- scitex/plt/_subplots/_export_as_csv_formatters/_format_eventplot.py +12 -10
- scitex/plt/_subplots/_export_as_csv_formatters/_format_fill.py +31 -17
- scitex/plt/_subplots/_export_as_csv_formatters/_format_fill_between.py +33 -21
- scitex/plt/_subplots/_export_as_csv_formatters/_format_hexbin.py +14 -4
- scitex/plt/_subplots/_export_as_csv_formatters/_format_hist.py +43 -29
- scitex/plt/_subplots/_export_as_csv_formatters/_format_hist2d.py +14 -4
- scitex/plt/_subplots/_export_as_csv_formatters/_format_imshow.py +27 -11
- scitex/plt/_subplots/_export_as_csv_formatters/_format_imshow2d.py +7 -5
- scitex/plt/_subplots/_export_as_csv_formatters/_format_matshow.py +9 -7
- scitex/plt/_subplots/_export_as_csv_formatters/_format_pie.py +15 -6
- scitex/plt/_subplots/_export_as_csv_formatters/_format_plot.py +128 -34
- scitex/plt/_subplots/_export_as_csv_formatters/_format_plot_box.py +52 -27
- scitex/plt/_subplots/_export_as_csv_formatters/_format_plot_imshow.py +1 -0
- scitex/plt/_subplots/_export_as_csv_formatters/_format_plot_kde.py +16 -17
- scitex/plt/_subplots/_export_as_csv_formatters/_format_plot_scatter.py +7 -5
- scitex/plt/_subplots/_export_as_csv_formatters/_format_quiver.py +10 -8
- scitex/plt/_subplots/_export_as_csv_formatters/_format_scatter.py +17 -6
- scitex/plt/_subplots/_export_as_csv_formatters/_format_sns_barplot.py +43 -26
- scitex/plt/_subplots/_export_as_csv_formatters/_format_sns_boxplot.py +68 -47
- scitex/plt/_subplots/_export_as_csv_formatters/_format_sns_heatmap.py +52 -64
- scitex/plt/_subplots/_export_as_csv_formatters/_format_sns_histplot.py +55 -50
- scitex/plt/_subplots/_export_as_csv_formatters/_format_sns_jointplot.py +9 -11
- scitex/plt/_subplots/_export_as_csv_formatters/_format_sns_kdeplot.py +63 -29
- scitex/plt/_subplots/_export_as_csv_formatters/_format_sns_lineplot.py +4 -4
- scitex/plt/_subplots/_export_as_csv_formatters/_format_sns_pairplot.py +6 -4
- scitex/plt/_subplots/_export_as_csv_formatters/_format_sns_scatterplot.py +44 -40
- scitex/plt/_subplots/_export_as_csv_formatters/_format_sns_stripplot.py +46 -39
- scitex/plt/_subplots/_export_as_csv_formatters/_format_sns_swarmplot.py +46 -39
- scitex/plt/_subplots/_export_as_csv_formatters/_format_sns_violinplot.py +75 -94
- scitex/plt/_subplots/_export_as_csv_formatters/_format_stem.py +12 -3
- scitex/plt/_subplots/_export_as_csv_formatters/_format_step.py +12 -3
- scitex/plt/_subplots/_export_as_csv_formatters/_format_streamplot.py +10 -8
- scitex/plt/_subplots/_export_as_csv_formatters/_format_stx_conf_mat.py +17 -15
- scitex/plt/_subplots/_export_as_csv_formatters/_format_stx_ecdf.py +10 -9
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- scitex/template/clone_singularity.py +6 -7
- scitex/template/clone_writer_directory.py +6 -7
- scitex/tex/_preview.py +26 -11
- scitex/tex/_to_vec.py +10 -7
- scitex/torch/__init__.py +11 -1
- scitex/types/_ArrayLike.py +2 -0
- scitex/types/_is_listed_X.py +3 -3
- scitex/units.py +110 -77
- scitex/utils/_compress_hdf5.py +3 -3
- scitex/utils/_email.py +8 -4
- scitex/utils/_notify.py +14 -8
- scitex/utils/_search.py +6 -6
- scitex/utils/_verify_scitex_format.py +17 -42
- scitex/utils/_verify_scitex_format_v01.py +12 -34
- scitex/utils/template.py +4 -3
- scitex/vis/README.md +246 -615
- scitex/vis/__init__.py +138 -78
- scitex/vis/backend/__init__.py +3 -3
- scitex/vis/backend/{export.py → _export.py} +1 -1
- scitex/vis/backend/{parser.py → _parser.py} +1 -3
- scitex/vis/backend/{render.py → _render.py} +1 -1
- scitex/vis/canvas.py +435 -0
- scitex/vis/docs/CANVAS_ARCHITECTURE.md +307 -0
- scitex/vis/editor/__init__.py +1 -1
- scitex/vis/editor/_dearpygui_editor.py +1976 -0
- scitex/vis/editor/_defaults.py +140 -110
- scitex/vis/editor/_edit.py +90 -42
- scitex/vis/editor/_flask_editor.py +37 -0
- scitex/vis/editor/_mpl_editor.py +63 -48
- scitex/vis/editor/_qt_editor.py +916 -0
- scitex/vis/editor/_tkinter_editor.py +146 -89
- scitex/vis/editor/flask_editor/__init__.py +21 -0
- scitex/vis/editor/flask_editor/_bbox.py +529 -0
- scitex/vis/editor/flask_editor/_core.py +168 -0
- scitex/vis/editor/flask_editor/_plotter.py +567 -0
- scitex/vis/editor/flask_editor/_renderer.py +393 -0
- scitex/vis/editor/flask_editor/_utils.py +80 -0
- scitex/vis/editor/flask_editor/templates/__init__.py +33 -0
- scitex/vis/editor/flask_editor/templates/_html.py +513 -0
- scitex/vis/editor/flask_editor/templates/_scripts.py +1261 -0
- scitex/vis/editor/flask_editor/templates/_styles.py +739 -0
- scitex/vis/io/__init__.py +84 -21
- scitex/vis/io/_canvas.py +230 -0
- scitex/vis/io/_data.py +208 -0
- scitex/vis/io/_directory.py +205 -0
- scitex/vis/io/_export.py +463 -0
- scitex/vis/io/{load.py → _load.py} +1 -1
- scitex/vis/io/_panel.py +432 -0
- scitex/vis/io/{save.py → _save.py} +0 -0
- scitex/vis/model/__init__.py +7 -7
- scitex/vis/model/{annotations.py → _annotations.py} +2 -4
- scitex/vis/model/{axes.py → _axes.py} +1 -1
- scitex/vis/model/{figure.py → _figure.py} +0 -0
- scitex/vis/model/{guides.py → _guides.py} +1 -1
- scitex/vis/model/{plot.py → _plot.py} +2 -4
- scitex/vis/model/{plot_types.py → _plot_types.py} +0 -0
- scitex/vis/model/{styles.py → _styles.py} +0 -0
- scitex/vis/utils/__init__.py +2 -2
- scitex/vis/utils/{defaults.py → _defaults.py} +1 -2
- scitex/vis/utils/{validate.py → _validate.py} +3 -9
- scitex/web/__init__.py +7 -1
- scitex/web/_scraping.py +54 -38
- scitex/web/_search_pubmed.py +30 -14
- scitex/writer/.legacy/Writer_v01-refactored.py +4 -4
- scitex/writer/.legacy/_compile.py +18 -28
- scitex/writer/Writer.py +8 -21
- scitex/writer/__init__.py +11 -11
- scitex/writer/_clone_writer_project.py +2 -6
- scitex/writer/_compile/__init__.py +1 -0
- scitex/writer/_compile/_parser.py +1 -0
- scitex/writer/_compile/_runner.py +35 -38
- scitex/writer/_compile/_validator.py +1 -0
- scitex/writer/_compile/manuscript.py +1 -0
- scitex/writer/_compile/revision.py +1 -0
- scitex/writer/_compile/supplementary.py +1 -0
- scitex/writer/_compile_async.py +5 -12
- scitex/writer/_project/__init__.py +1 -0
- scitex/writer/_project/_create.py +10 -25
- scitex/writer/_project/_trees.py +4 -9
- scitex/writer/_project/_validate.py +2 -3
- scitex/writer/_validate_tree_structures.py +7 -18
- scitex/writer/dataclasses/__init__.py +8 -10
- scitex/writer/dataclasses/config/_CONSTANTS.py +2 -3
- scitex/writer/dataclasses/config/_WriterConfig.py +4 -9
- scitex/writer/dataclasses/contents/_ManuscriptContents.py +14 -25
- scitex/writer/dataclasses/contents/_RevisionContents.py +21 -16
- scitex/writer/dataclasses/contents/_SupplementaryContents.py +21 -24
- scitex/writer/dataclasses/core/_Document.py +2 -3
- scitex/writer/dataclasses/core/_DocumentSection.py +8 -23
- scitex/writer/dataclasses/results/_CompilationResult.py +2 -3
- scitex/writer/dataclasses/results/_LaTeXIssue.py +3 -6
- scitex/writer/dataclasses/results/_SaveSectionsResponse.py +20 -9
- scitex/writer/dataclasses/results/_SectionReadResponse.py +24 -10
- scitex/writer/dataclasses/tree/_ConfigTree.py +7 -4
- scitex/writer/dataclasses/tree/_ManuscriptTree.py +10 -13
- scitex/writer/dataclasses/tree/_RevisionTree.py +16 -17
- scitex/writer/dataclasses/tree/_ScriptsTree.py +10 -5
- scitex/writer/dataclasses/tree/_SharedTree.py +10 -13
- scitex/writer/dataclasses/tree/_SupplementaryTree.py +15 -14
- scitex/writer/utils/.legacy_git_retry.py +3 -8
- scitex/writer/utils/_parse_latex_logs.py +2 -3
- scitex/writer/utils/_parse_script_args.py +20 -23
- scitex/writer/utils/_watch.py +5 -5
- {scitex-2.4.3.dist-info → scitex-2.7.0.dist-info}/METADATA +12 -11
- {scitex-2.4.3.dist-info → scitex-2.7.0.dist-info}/RECORD +1075 -958
- scitex/db/_sqlite3/_SQLite3Mixins/_ColumnMixin_v01-indentation-issues.py +0 -583
- scitex/plt/_subplots/_export_as_csv_formatters.py +0 -112
- scitex/vis/DJANGO_INTEGRATION.md +0 -677
- scitex/vis/editor/_web_editor.py +0 -1440
- scitex/vis/tmp.txt +0 -239
- {scitex-2.4.3.dist-info → scitex-2.7.0.dist-info}/WHEEL +0 -0
- {scitex-2.4.3.dist-info → scitex-2.7.0.dist-info}/entry_points.txt +0 -0
- {scitex-2.4.3.dist-info → scitex-2.7.0.dist-info}/licenses/LICENSE +0 -0
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#!/usr/bin/env python3
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# -*- coding: utf-8 -*-
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# Timestamp: "2025-12-08 23:30:00 (ywatanabe)"
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# File: /home/ywatanabe/proj/scitex-code/src/scitex/plt/gallery/_plots.py
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"""Plot definitions for gallery generation."""
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import numpy as np
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# =============================================================================
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# Line Plots
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# =============================================================================
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def plot_plot(fig, ax, stx):
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"""ax.plot() - Basic line plot."""
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time_sec = np.linspace(0, 2 * np.pi, 100)
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ax.plot(time_sec, np.sin(time_sec), "b-", label="sin", id="sine_wave")
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ax.plot(time_sec, np.cos(time_sec), "r--", label="cos", id="cosine_wave")
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ax.set_xyt(x="Time [s]", y="Amplitude [a.u.]", t="ax.plot()")
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ax.legend(frameon=False, fontsize=6)
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return fig, ax
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def plot_step(fig, ax, stx):
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"""ax.step() - Step plot."""
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time_ms = np.arange(20)
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voltage_mv = np.random.randint(0, 5, 20)
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ax.step(time_ms, voltage_mv, where="mid", id="digital_signal")
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ax.set_xyt(x="Time [ms]", y="Voltage [mV]", t="ax.step()")
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return fig, ax
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def plot_stx_line(fig, ax, stx):
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"""ax.stx_line() - Simple line from 1D array."""
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np.random.seed(42)
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signal_amplitude = np.sin(np.linspace(0, 4 * np.pi, 100)) + np.random.normal(
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0, 0.1, 100
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ax.stx_line(signal_amplitude, id="eeg_signal", label="Signal")
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ax.set_xyt(x="Sample", y="Amplitude [μV]", t="ax.stx_line()")
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ax.legend(frameon=False, fontsize=6)
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return fig, ax
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def plot_stx_shaded_line(fig, ax, stx):
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"""ax.stx_shaded_line() - Line with shaded region."""
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np.random.seed(42)
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time_sec = np.linspace(0, 10, 100)
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mean_value = np.sin(time_sec)
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lower_bound = mean_value - 0.3
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upper_bound = mean_value + 0.3
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ax.stx_shaded_line(
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time_sec, mean_value, lower_bound, upper_bound, id="confidence_band"
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ax.set_xyt(x="Time [s]", y="Response [a.u.]", t="ax.stx_shaded_line()")
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# =============================================================================
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# Statistical Summaries
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# =============================================================================
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def plot_stx_mean_std(fig, ax, stx):
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"""ax.stx_mean_std() - Mean ± standard deviation."""
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np.random.seed(42)
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n_trials, n_timepoints = 50, 100
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trials_data = np.sin(np.linspace(0, 2 * np.pi, n_timepoints)) + np.random.normal(
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ax.stx_mean_std(trials_data, id="trial_average")
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ax.set_xyt(x="Time [ms]", y="Amplitude [μV]", t="ax.stx_mean_std()")
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return fig, ax
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def plot_stx_mean_ci(fig, ax, stx):
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"""ax.stx_mean_ci() - Mean with confidence interval."""
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np.random.seed(42)
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n_subjects, n_timepoints = 30, 100
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subjects_data = np.sin(np.linspace(0, 2 * np.pi, n_timepoints)) + np.random.normal(
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ax.stx_mean_ci(subjects_data, id="group_average")
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ax.set_xyt(x="Time [ms]", y="BOLD [%]", t="ax.stx_mean_ci()")
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return fig, ax
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def plot_stx_median_iqr(fig, ax, stx):
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"""ax.stx_median_iqr() - Median with interquartile range."""
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np.random.seed(42)
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n_samples, n_timepoints = 40, 100
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samples_data = np.exp(np.linspace(0, 2, n_timepoints)) + np.random.exponential(
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ax.stx_median_iqr(samples_data, id="reaction_times")
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ax.set_xyt(x="Trial", y="RT [ms]", t="ax.stx_median_iqr()")
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return fig, ax
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def plot_errorbar(fig, ax, stx):
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"""ax.errorbar() - Error bars."""
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conditions = np.arange(5)
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accuracy_mean = [0.75, 0.82, 0.88, 0.91, 0.85]
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accuracy_std = [0.08, 0.06, 0.05, 0.04, 0.07]
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ax.errorbar(
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conditions, accuracy_mean, yerr=accuracy_std, fmt="o-", capsize=3, id="accuracy"
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ax.set_xyt(x="Condition", y="Accuracy", t="ax.errorbar()")
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def plot_stx_errorbar(fig, ax, stx):
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"""ax.stx_errorbar() - Error bars with x, y, yerr."""
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np.random.seed(42)
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x = np.arange(5)
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y = np.array([0.7, 0.8, 0.85, 0.9, 0.82])
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yerr = np.array([0.05, 0.04, 0.03, 0.04, 0.06])
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ax.stx_errorbar(x, y, yerr=yerr, id="group_accuracy", fmt="o-", capsize=3)
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ax.set_xyt(x="Condition", y="Accuracy", t="ax.stx_errorbar()")
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# =============================================================================
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# Distributions
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# =============================================================================
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def plot_hist(fig, ax, stx):
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"""ax.hist() - Histogram."""
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np.random.seed(42)
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reaction_times = np.random.normal(450, 80, 1000)
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ax.hist(reaction_times, bins=30, alpha=0.7, edgecolor="black", id="rt_distribution")
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ax.set_xyt(x="Reaction Time [ms]", y="Count", t="ax.hist()")
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return fig, ax
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def plot_hist2d(fig, ax, stx):
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"""ax.hist2d() - 2D histogram."""
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np.random.seed(42)
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x_position = np.random.normal(0, 1, 5000)
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y_position = np.random.normal(0, 1, 5000)
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ax.hist2d(x_position, y_position, bins=30, cmap="viridis", id="position_density")
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ax.set_xyt(x="X Position [cm]", y="Y Position [cm]", t="ax.hist2d()")
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return fig, ax
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def plot_stx_kde(fig, ax, stx):
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"""ax.stx_kde() - Kernel density estimation."""
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np.random.seed(42)
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scores = np.concatenate(
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[np.random.normal(70, 10, 500), np.random.normal(85, 8, 300)]
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ax.stx_kde(scores, id="score_distribution")
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return fig, ax
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def plot_stx_ecdf(fig, ax, stx):
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"""ax.stx_ecdf() - Empirical CDF."""
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np.random.seed(42)
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latencies = np.random.exponential(50, 500)
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ax.stx_ecdf(latencies, id="latency_cdf")
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ax.set_xyt(x="Latency [ms]", y="Cumulative Probability", t="ax.stx_ecdf()")
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return fig, ax
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def plot_stx_joyplot(fig, ax, stx):
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"""ax.stx_joyplot() - Ridge/joy plot."""
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np.random.seed(42)
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n_groups = 5
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data_groups = [np.random.normal(i * 0.5, 0.8, 200) for i in range(n_groups)]
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ax.stx_joyplot(data_groups, id="distributions_by_group")
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ax.set_xyt(x="Value", y="Group", t="ax.stx_joyplot()")
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return fig, ax
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# =============================================================================
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# Categorical
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# =============================================================================
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def plot_bar(fig, ax, stx):
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"""ax.bar() - Bar chart."""
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categories = ["A", "B", "C", "D"]
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values = [23, 45, 56, 78]
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ax.bar(categories, values, id="category_counts")
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ax.set_xyt(x="Category", y="Count", t="ax.bar()")
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return fig, ax
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def plot_barh(fig, ax, stx):
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"""ax.barh() - Horizontal bar chart."""
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methods = ["Method A", "Method B", "Method C", "Method D"]
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accuracy = [0.85, 0.92, 0.78, 0.88]
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ax.barh(methods, accuracy, id="method_comparison")
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ax.set_xyt(x="Accuracy", y="Method", t="ax.barh()")
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return fig, ax
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def plot_stx_bar(fig, ax, stx):
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"""ax.stx_bar() - Bar chart with x and height."""
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x = ["A", "B", "C", "D"]
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height = [0.7, 0.8, 0.85, 0.9]
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ax.stx_bar(x, height, id="condition_means")
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199
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+
ax.set_xyt(x="Condition", y="Performance", t="ax.stx_bar()")
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200
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+
return fig, ax
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201
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+
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202
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+
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203
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+
def plot_stx_barh(fig, ax, stx):
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204
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+
"""ax.stx_barh() - Horizontal bar with y and width."""
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205
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+
y = ["Method A", "Method B", "Method C", "Method D"]
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206
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+
width = [0.75, 0.82, 0.88, 0.91]
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207
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+
ax.stx_barh(y, width, id="method_performance")
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208
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+
ax.set_xyt(x="Accuracy", y="Method", t="ax.stx_barh()")
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209
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+
return fig, ax
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210
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+
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211
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+
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212
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+
def plot_boxplot(fig, ax, stx):
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213
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+
"""ax.boxplot() - Box plot."""
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214
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+
np.random.seed(42)
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215
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+
group_a = np.random.normal(100, 15, 50)
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216
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+
group_b = np.random.normal(110, 20, 50)
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217
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+
group_c = np.random.normal(95, 10, 50)
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218
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+
ax.boxplot(
|
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219
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+
[group_a, group_b, group_c],
|
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220
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+
labels=["Control", "Treatment A", "Treatment B"],
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221
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+
id="treatment_comparison",
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222
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+
)
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223
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+
ax.set_xyt(x="Group", y="Response", t="ax.boxplot()")
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224
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+
return fig, ax
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225
|
+
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226
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+
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227
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+
def plot_violinplot(fig, ax, stx):
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228
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+
"""ax.violinplot() - Violin plot."""
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229
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+
np.random.seed(42)
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230
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+
data = [np.random.normal(0, std, 100) for std in [1, 2, 1.5, 2.5]]
|
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231
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+
ax.violinplot(data, showmeans=True, showmedians=True, id="distribution_comparison")
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232
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+
ax.set_xyt(x="Condition", y="Value", t="ax.violinplot()")
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233
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+
return fig, ax
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234
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+
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235
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+
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236
|
+
def plot_stx_box(fig, ax, stx):
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237
|
+
"""ax.stx_box() - Box plot from 2D array."""
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238
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+
np.random.seed(42)
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239
|
+
n_subjects, n_conditions = 30, 4
|
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240
|
+
data = np.random.normal([50, 55, 48, 60], 10, (n_subjects, n_conditions))
|
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241
|
+
ax.stx_box(data, id="condition_distributions")
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242
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+
ax.set_xyt(x="Condition", y="Score", t="ax.stx_box()")
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243
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+
return fig, ax
|
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244
|
+
|
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245
|
+
|
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246
|
+
def plot_stx_violin(fig, ax, stx):
|
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247
|
+
"""ax.stx_violin() - Violin plot from list of arrays."""
|
|
248
|
+
np.random.seed(42)
|
|
249
|
+
data = [
|
|
250
|
+
np.random.normal(0, 1, 100),
|
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251
|
+
np.random.normal(0.5, 1.2, 100),
|
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252
|
+
np.random.normal(1, 0.8, 100),
|
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253
|
+
]
|
|
254
|
+
ax.stx_violin(data, id="effect_distributions")
|
|
255
|
+
ax.set_xyt(x="Condition", y="Effect Size", t="ax.stx_violin()")
|
|
256
|
+
return fig, ax
|
|
257
|
+
|
|
258
|
+
|
|
259
|
+
def plot_stx_boxplot(fig, ax, stx):
|
|
260
|
+
"""ax.stx_boxplot() - Enhanced box plot."""
|
|
261
|
+
np.random.seed(42)
|
|
262
|
+
data = [np.random.exponential(scale, 100) for scale in [1, 1.5, 2, 1.2]]
|
|
263
|
+
ax.stx_boxplot(data, id="skewed_distributions")
|
|
264
|
+
ax.set_xyt(x="Group", y="Value", t="ax.stx_boxplot()")
|
|
265
|
+
return fig, ax
|
|
266
|
+
|
|
267
|
+
|
|
268
|
+
def plot_stx_violinplot(fig, ax, stx):
|
|
269
|
+
"""ax.stx_violinplot() - Enhanced violin plot."""
|
|
270
|
+
np.random.seed(42)
|
|
271
|
+
data = [
|
|
272
|
+
np.concatenate([np.random.normal(-1, 0.5, 50), np.random.normal(1, 0.5, 50)])
|
|
273
|
+
for _ in range(3)
|
|
274
|
+
]
|
|
275
|
+
ax.stx_violinplot(data, id="bimodal_distributions")
|
|
276
|
+
ax.set_xyt(x="Condition", y="Value", t="ax.stx_violinplot()")
|
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277
|
+
return fig, ax
|
|
278
|
+
|
|
279
|
+
|
|
280
|
+
# =============================================================================
|
|
281
|
+
# Scatter & Points
|
|
282
|
+
# =============================================================================
|
|
283
|
+
def plot_scatter(fig, ax, stx):
|
|
284
|
+
"""ax.scatter() - Scatter plot."""
|
|
285
|
+
np.random.seed(42)
|
|
286
|
+
age = np.random.uniform(20, 80, 100)
|
|
287
|
+
response_time = 200 + age * 2 + np.random.normal(0, 30, 100)
|
|
288
|
+
ax.scatter(age, response_time, alpha=0.6, id="age_rt_correlation")
|
|
289
|
+
ax.set_xyt(x="Age [years]", y="Response Time [ms]", t="ax.scatter()")
|
|
290
|
+
return fig, ax
|
|
291
|
+
|
|
292
|
+
|
|
293
|
+
def plot_stx_scatter(fig, ax, stx):
|
|
294
|
+
"""ax.stx_scatter() - Enhanced scatter plot."""
|
|
295
|
+
np.random.seed(42)
|
|
296
|
+
x_feature = np.random.normal(0, 1, 150)
|
|
297
|
+
y_feature = 0.7 * x_feature + np.random.normal(0, 0.5, 150)
|
|
298
|
+
ax.stx_scatter(x_feature, y_feature, id="feature_correlation")
|
|
299
|
+
ax.set_xyt(x="Feature X", y="Feature Y", t="ax.stx_scatter()")
|
|
300
|
+
return fig, ax
|
|
301
|
+
|
|
302
|
+
|
|
303
|
+
def plot_stem(fig, ax, stx):
|
|
304
|
+
"""ax.stem() - Stem plot."""
|
|
305
|
+
frequencies = np.arange(0, 50, 5)
|
|
306
|
+
power_spectrum = np.abs(np.random.normal(0, 1, 10)) ** 2
|
|
307
|
+
ax.stem(frequencies, power_spectrum, id="frequency_spectrum")
|
|
308
|
+
ax.set_xyt(x="Frequency [Hz]", y="Power [dB]", t="ax.stem()")
|
|
309
|
+
return fig, ax
|
|
310
|
+
|
|
311
|
+
|
|
312
|
+
def plot_hexbin(fig, ax, stx):
|
|
313
|
+
"""ax.hexbin() - Hexagonal binning."""
|
|
314
|
+
np.random.seed(42)
|
|
315
|
+
x_coord = np.random.normal(0, 2, 10000)
|
|
316
|
+
y_coord = np.random.normal(0, 2, 10000)
|
|
317
|
+
ax.hexbin(x_coord, y_coord, gridsize=20, cmap="YlOrRd", id="density_map")
|
|
318
|
+
ax.set_xyt(x="X", y="Y", t="ax.hexbin()")
|
|
319
|
+
return fig, ax
|
|
320
|
+
|
|
321
|
+
|
|
322
|
+
# =============================================================================
|
|
323
|
+
# Area & Fill
|
|
324
|
+
# =============================================================================
|
|
325
|
+
def plot_fill_between(fig, ax, stx):
|
|
326
|
+
"""ax.fill_between() - Filled area between curves."""
|
|
327
|
+
time = np.linspace(0, 10, 100)
|
|
328
|
+
upper = np.sin(time) + 0.5
|
|
329
|
+
lower = np.sin(time) - 0.5
|
|
330
|
+
ax.fill_between(time, lower, upper, alpha=0.3, id="confidence_region")
|
|
331
|
+
ax.plot(time, np.sin(time), "b-", id="mean_line")
|
|
332
|
+
ax.set_xyt(x="Time [s]", y="Value", t="ax.fill_between()")
|
|
333
|
+
return fig, ax
|
|
334
|
+
|
|
335
|
+
|
|
336
|
+
def plot_fill_betweenx(fig, ax, stx):
|
|
337
|
+
"""ax.fill_betweenx() - Horizontal filled area."""
|
|
338
|
+
y = np.linspace(0, 10, 100)
|
|
339
|
+
x1 = np.sin(y)
|
|
340
|
+
x2 = np.sin(y) + 1
|
|
341
|
+
ax.fill_betweenx(y, x1, x2, alpha=0.3, id="horizontal_band")
|
|
342
|
+
ax.set_xyt(x="Value", y="Depth [m]", t="ax.fill_betweenx()")
|
|
343
|
+
return fig, ax
|
|
344
|
+
|
|
345
|
+
|
|
346
|
+
def plot_stx_fill_between(fig, ax, stx):
|
|
347
|
+
"""ax.stx_fill_between() - Enhanced fill between."""
|
|
348
|
+
np.random.seed(42)
|
|
349
|
+
time = np.linspace(0, 5, 50)
|
|
350
|
+
mean = np.sin(time * 2)
|
|
351
|
+
std = 0.3 + 0.1 * np.abs(np.sin(time))
|
|
352
|
+
ax.stx_fill_between(time, mean - std, mean + std, id="uncertainty_band")
|
|
353
|
+
ax.plot(time, mean, "k-", linewidth=1, id="central_estimate")
|
|
354
|
+
ax.set_xyt(x="Time [s]", y="Estimate", t="ax.stx_fill_between()")
|
|
355
|
+
return fig, ax
|
|
356
|
+
|
|
357
|
+
|
|
358
|
+
def plot_stx_fillv(fig, ax, stx):
|
|
359
|
+
"""ax.stx_fillv() - Vertical fill regions."""
|
|
360
|
+
time = np.linspace(0, 10, 100)
|
|
361
|
+
signal = np.sin(time * 2)
|
|
362
|
+
ax.plot(time, signal, "b-", id="signal")
|
|
363
|
+
ax.stx_fillv([2, 6], [4, 8], alpha=0.3, color="red", id="stimulus_periods")
|
|
364
|
+
ax.set_xyt(x="Time [s]", y="Amplitude", t="ax.stx_fillv()")
|
|
365
|
+
return fig, ax
|
|
366
|
+
|
|
367
|
+
|
|
368
|
+
# =============================================================================
|
|
369
|
+
# Grid & Matrix
|
|
370
|
+
# =============================================================================
|
|
371
|
+
def plot_imshow(fig, ax, stx):
|
|
372
|
+
"""ax.imshow() - Image display."""
|
|
373
|
+
np.random.seed(42)
|
|
374
|
+
image_data = np.random.rand(20, 20)
|
|
375
|
+
im = ax.imshow(image_data, cmap="viridis", id="random_image")
|
|
376
|
+
fig.colorbar(im, ax=ax, shrink=0.8)
|
|
377
|
+
ax.set_xyt(x="X", y="Y", t="ax.imshow()")
|
|
378
|
+
return fig, ax
|
|
379
|
+
|
|
380
|
+
|
|
381
|
+
def plot_matshow(fig, ax, stx):
|
|
382
|
+
"""ax.matshow() - Matrix display."""
|
|
383
|
+
np.random.seed(42)
|
|
384
|
+
correlation_matrix = np.corrcoef(np.random.rand(5, 100))
|
|
385
|
+
im = ax.matshow(correlation_matrix, cmap="RdBu_r", id="correlation_matrix")
|
|
386
|
+
fig.colorbar(im, ax=ax, shrink=0.8)
|
|
387
|
+
ax.set_xyt(x="Variable", y="Variable", t="ax.matshow()")
|
|
388
|
+
return fig, ax
|
|
389
|
+
|
|
390
|
+
|
|
391
|
+
def plot_stx_imshow(fig, ax, stx):
|
|
392
|
+
"""ax.stx_imshow() - Enhanced image display."""
|
|
393
|
+
np.random.seed(42)
|
|
394
|
+
brain_slice = np.random.rand(64, 64) * 100
|
|
395
|
+
ax.stx_imshow(brain_slice, cmap="hot", id="brain_activity")
|
|
396
|
+
ax.set_xyt(x="X [voxels]", y="Y [voxels]", t="ax.stx_imshow()")
|
|
397
|
+
return fig, ax
|
|
398
|
+
|
|
399
|
+
|
|
400
|
+
def plot_stx_image(fig, ax, stx):
|
|
401
|
+
"""ax.stx_image() - Image from 2D array."""
|
|
402
|
+
np.random.seed(42)
|
|
403
|
+
grayscale_image = np.random.rand(32, 32)
|
|
404
|
+
ax.stx_image(grayscale_image, id="grayscale_image")
|
|
405
|
+
ax.set_xyt(x="X", y="Y", t="ax.stx_image()")
|
|
406
|
+
return fig, ax
|
|
407
|
+
|
|
408
|
+
|
|
409
|
+
def plot_stx_heatmap(fig, ax, stx):
|
|
410
|
+
"""ax.stx_heatmap() - Annotated heatmap."""
|
|
411
|
+
np.random.seed(42)
|
|
412
|
+
data = np.random.rand(5, 5)
|
|
413
|
+
ax.stx_heatmap(data, id="annotated_heatmap")
|
|
414
|
+
ax.set_xyt(x="Feature", y="Sample", t="ax.stx_heatmap()")
|
|
415
|
+
return fig, ax
|
|
416
|
+
|
|
417
|
+
|
|
418
|
+
def plot_stx_conf_mat(fig, ax, stx):
|
|
419
|
+
"""ax.stx_conf_mat() - Confusion matrix."""
|
|
420
|
+
np.random.seed(42)
|
|
421
|
+
conf_matrix = np.array([[45, 5, 2], [3, 42, 8], [1, 6, 48]])
|
|
422
|
+
ax.stx_conf_mat(conf_matrix, id="classification_results")
|
|
423
|
+
ax.set_xyt(x="Predicted", y="Actual", t="ax.stx_conf_mat()")
|
|
424
|
+
return fig, ax
|
|
425
|
+
|
|
426
|
+
|
|
427
|
+
# =============================================================================
|
|
428
|
+
# Contours
|
|
429
|
+
# =============================================================================
|
|
430
|
+
def plot_contour(fig, ax, stx):
|
|
431
|
+
"""ax.contour() - Contour lines."""
|
|
432
|
+
x = np.linspace(-3, 3, 100)
|
|
433
|
+
y = np.linspace(-3, 3, 100)
|
|
434
|
+
X, Y = np.meshgrid(x, y)
|
|
435
|
+
Z = np.sin(X) * np.cos(Y)
|
|
436
|
+
cs = ax.contour(X, Y, Z, levels=10, id="contour_lines")
|
|
437
|
+
ax.clabel(cs, inline=True, fontsize=6)
|
|
438
|
+
ax.set_xyt(x="X", y="Y", t="ax.contour()")
|
|
439
|
+
return fig, ax
|
|
440
|
+
|
|
441
|
+
|
|
442
|
+
def plot_contourf(fig, ax, stx):
|
|
443
|
+
"""ax.contourf() - Filled contours."""
|
|
444
|
+
x = np.linspace(-3, 3, 100)
|
|
445
|
+
y = np.linspace(-3, 3, 100)
|
|
446
|
+
X, Y = np.meshgrid(x, y)
|
|
447
|
+
Z = np.exp(-(X**2 + Y**2) / 2)
|
|
448
|
+
cf = ax.contourf(X, Y, Z, levels=20, cmap="viridis", id="gaussian_2d")
|
|
449
|
+
fig.colorbar(cf, ax=ax, shrink=0.8)
|
|
450
|
+
ax.set_xyt(x="X", y="Y", t="ax.contourf()")
|
|
451
|
+
return fig, ax
|
|
452
|
+
|
|
453
|
+
|
|
454
|
+
def plot_stx_contour(fig, ax, stx):
|
|
455
|
+
"""ax.stx_contour() - Enhanced contour plot."""
|
|
456
|
+
np.random.seed(42)
|
|
457
|
+
x = np.linspace(-2, 2, 50)
|
|
458
|
+
y = np.linspace(-2, 2, 50)
|
|
459
|
+
X, Y = np.meshgrid(x, y)
|
|
460
|
+
Z = X * np.exp(-(X**2) - Y**2)
|
|
461
|
+
ax.stx_contour(X, Y, Z, id="potential_field")
|
|
462
|
+
ax.set_xyt(x="X", y="Y", t="ax.stx_contour()")
|
|
463
|
+
return fig, ax
|
|
464
|
+
|
|
465
|
+
|
|
466
|
+
# =============================================================================
|
|
467
|
+
# Vector Fields
|
|
468
|
+
# =============================================================================
|
|
469
|
+
def plot_quiver(fig, ax, stx):
|
|
470
|
+
"""ax.quiver() - Vector field."""
|
|
471
|
+
x = np.linspace(-2, 2, 10)
|
|
472
|
+
y = np.linspace(-2, 2, 10)
|
|
473
|
+
X, Y = np.meshgrid(x, y)
|
|
474
|
+
U = -Y
|
|
475
|
+
V = X
|
|
476
|
+
ax.quiver(X, Y, U, V, id="rotation_field")
|
|
477
|
+
ax.set_xyt(x="X", y="Y", t="ax.quiver()")
|
|
478
|
+
return fig, ax
|
|
479
|
+
|
|
480
|
+
|
|
481
|
+
def plot_streamplot(fig, ax, stx):
|
|
482
|
+
"""ax.streamplot() - Streamlines."""
|
|
483
|
+
x = np.linspace(-2, 2, 30)
|
|
484
|
+
y = np.linspace(-2, 2, 30)
|
|
485
|
+
X, Y = np.meshgrid(x, y)
|
|
486
|
+
U = -1 - X**2 + Y
|
|
487
|
+
V = 1 + X - Y**2
|
|
488
|
+
ax.streamplot(X, Y, U, V, density=1, id="flow_field")
|
|
489
|
+
ax.set_xyt(x="X", y="Y", t="ax.streamplot()")
|
|
490
|
+
return fig, ax
|
|
491
|
+
|
|
492
|
+
|
|
493
|
+
# =============================================================================
|
|
494
|
+
# Special
|
|
495
|
+
# =============================================================================
|
|
496
|
+
def plot_pie(fig, ax, stx):
|
|
497
|
+
"""ax.pie() - Pie chart."""
|
|
498
|
+
sizes = [30, 25, 20, 15, 10]
|
|
499
|
+
labels = ["Category A", "Category B", "Category C", "Category D", "Category E"]
|
|
500
|
+
ax.pie(sizes, labels=labels, autopct="%1.1f%%", id="category_breakdown")
|
|
501
|
+
ax.set_title("ax.pie()")
|
|
502
|
+
return fig, ax
|
|
503
|
+
|
|
504
|
+
|
|
505
|
+
def plot_stx_raster(fig, ax, stx):
|
|
506
|
+
"""ax.stx_raster() - Spike raster plot."""
|
|
507
|
+
np.random.seed(42)
|
|
508
|
+
n_neurons, n_timepoints = 20, 1000
|
|
509
|
+
spike_times = [
|
|
510
|
+
np.sort(
|
|
511
|
+
np.random.choice(n_timepoints, np.random.randint(10, 50), replace=False)
|
|
512
|
+
)
|
|
513
|
+
for _ in range(n_neurons)
|
|
514
|
+
]
|
|
515
|
+
ax.stx_raster(spike_times, id="neural_spikes")
|
|
516
|
+
ax.set_xyt(x="Time [ms]", y="Neuron", t="ax.stx_raster()")
|
|
517
|
+
return fig, ax
|
|
518
|
+
|
|
519
|
+
|
|
520
|
+
def plot_stx_rectangle(fig, ax, stx):
|
|
521
|
+
"""ax.stx_rectangle() - Rectangle annotation."""
|
|
522
|
+
np.random.seed(42)
|
|
523
|
+
time = np.linspace(0, 10, 200)
|
|
524
|
+
signal = np.sin(time * 2) + np.random.normal(0, 0.1, 200)
|
|
525
|
+
ax.plot(time, signal, "b-", alpha=0.7, id="signal")
|
|
526
|
+
ax.stx_rectangle(2, -0.5, 2, 1.5, alpha=0.3, color="red", id="region_of_interest")
|
|
527
|
+
ax.set_xyt(x="Time [s]", y="Amplitude", t="ax.stx_rectangle()")
|
|
528
|
+
return fig, ax
|
|
529
|
+
|
|
530
|
+
|
|
531
|
+
# =============================================================================
|
|
532
|
+
# Plot Registry
|
|
533
|
+
# =============================================================================
|
|
534
|
+
PLOT_FUNCTIONS = {
|
|
535
|
+
# Line
|
|
536
|
+
"plot": plot_plot,
|
|
537
|
+
"step": plot_step,
|
|
538
|
+
"stx_line": plot_stx_line,
|
|
539
|
+
"stx_shaded_line": plot_stx_shaded_line,
|
|
540
|
+
# Statistical
|
|
541
|
+
"stx_mean_std": plot_stx_mean_std,
|
|
542
|
+
"stx_mean_ci": plot_stx_mean_ci,
|
|
543
|
+
"stx_median_iqr": plot_stx_median_iqr,
|
|
544
|
+
"errorbar": plot_errorbar,
|
|
545
|
+
"stx_errorbar": plot_stx_errorbar,
|
|
546
|
+
# Distribution
|
|
547
|
+
"hist": plot_hist,
|
|
548
|
+
"hist2d": plot_hist2d,
|
|
549
|
+
"stx_kde": plot_stx_kde,
|
|
550
|
+
"stx_ecdf": plot_stx_ecdf,
|
|
551
|
+
"stx_joyplot": plot_stx_joyplot,
|
|
552
|
+
# Categorical
|
|
553
|
+
"bar": plot_bar,
|
|
554
|
+
"barh": plot_barh,
|
|
555
|
+
"stx_bar": plot_stx_bar,
|
|
556
|
+
"stx_barh": plot_stx_barh,
|
|
557
|
+
"boxplot": plot_boxplot,
|
|
558
|
+
"violinplot": plot_violinplot,
|
|
559
|
+
"stx_box": plot_stx_box,
|
|
560
|
+
"stx_violin": plot_stx_violin,
|
|
561
|
+
"stx_boxplot": plot_stx_boxplot,
|
|
562
|
+
"stx_violinplot": plot_stx_violinplot,
|
|
563
|
+
# Scatter
|
|
564
|
+
"scatter": plot_scatter,
|
|
565
|
+
"stx_scatter": plot_stx_scatter,
|
|
566
|
+
"stem": plot_stem,
|
|
567
|
+
"hexbin": plot_hexbin,
|
|
568
|
+
# Area
|
|
569
|
+
"fill_between": plot_fill_between,
|
|
570
|
+
"fill_betweenx": plot_fill_betweenx,
|
|
571
|
+
"stx_fill_between": plot_stx_fill_between,
|
|
572
|
+
"stx_fillv": plot_stx_fillv,
|
|
573
|
+
# Grid
|
|
574
|
+
"imshow": plot_imshow,
|
|
575
|
+
"matshow": plot_matshow,
|
|
576
|
+
"stx_imshow": plot_stx_imshow,
|
|
577
|
+
"stx_image": plot_stx_image,
|
|
578
|
+
"stx_heatmap": plot_stx_heatmap,
|
|
579
|
+
"stx_conf_mat": plot_stx_conf_mat,
|
|
580
|
+
# Contour
|
|
581
|
+
"contour": plot_contour,
|
|
582
|
+
"contourf": plot_contourf,
|
|
583
|
+
"stx_contour": plot_stx_contour,
|
|
584
|
+
# Vector
|
|
585
|
+
"quiver": plot_quiver,
|
|
586
|
+
"streamplot": plot_streamplot,
|
|
587
|
+
# Special
|
|
588
|
+
"pie": plot_pie,
|
|
589
|
+
"stx_raster": plot_stx_raster,
|
|
590
|
+
"stx_rectangle": plot_stx_rectangle,
|
|
591
|
+
}
|
|
592
|
+
|
|
593
|
+
|
|
594
|
+
# EOF
|