scitex 2.17.0__py3-none-any.whl → 2.17.4__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- scitex/_dev/__init__.py +122 -0
- scitex/_dev/_config.py +391 -0
- scitex/_dev/_dashboard/__init__.py +11 -0
- scitex/_dev/_dashboard/_app.py +89 -0
- scitex/_dev/_dashboard/_routes.py +182 -0
- scitex/_dev/_dashboard/_scripts.py +422 -0
- scitex/_dev/_dashboard/_styles.py +295 -0
- scitex/_dev/_dashboard/_templates.py +130 -0
- scitex/_dev/_dashboard/static/version-dashboard-favicon.svg +12 -0
- scitex/_dev/_ecosystem.py +109 -0
- scitex/_dev/_github.py +360 -0
- scitex/_dev/_mcp/__init__.py +11 -0
- scitex/_dev/_mcp/handlers.py +182 -0
- scitex/_dev/_rtd.py +122 -0
- scitex/_dev/_ssh.py +362 -0
- scitex/_dev/_versions.py +272 -0
- scitex/_mcp_tools/__init__.py +2 -0
- scitex/_mcp_tools/dev.py +186 -0
- scitex/audio/_audio_check.py +84 -41
- scitex/cli/capture.py +45 -22
- scitex/cli/dev.py +494 -0
- scitex/cli/main.py +2 -0
- scitex/cli/stats.py +48 -20
- scitex/cli/verify.py +33 -36
- scitex/plt/__init__.py +16 -6
- scitex/scholar/_mcp/crossref_handlers.py +45 -7
- scitex/scholar/_mcp/openalex_handlers.py +45 -7
- scitex/scholar/config/default.yaml +2 -0
- scitex/scholar/local_dbs/__init__.py +5 -1
- scitex/scholar/local_dbs/export.py +93 -0
- scitex/scholar/local_dbs/unified.py +505 -0
- scitex/scholar/metadata_engines/ScholarEngine.py +11 -0
- scitex/scholar/metadata_engines/individual/OpenAlexLocalEngine.py +346 -0
- scitex/scholar/metadata_engines/individual/__init__.py +1 -0
- scitex/template/__init__.py +18 -1
- scitex/template/clone_research_minimal.py +111 -0
- scitex/verify/README.md +0 -12
- scitex/verify/__init__.py +0 -4
- scitex/verify/_visualize.py +0 -4
- scitex/verify/_viz/__init__.py +0 -18
- {scitex-2.17.0.dist-info → scitex-2.17.4.dist-info}/METADATA +2 -1
- {scitex-2.17.0.dist-info → scitex-2.17.4.dist-info}/RECORD +45 -24
- scitex/verify/_viz/_plotly.py +0 -193
- {scitex-2.17.0.dist-info → scitex-2.17.4.dist-info}/WHEEL +0 -0
- {scitex-2.17.0.dist-info → scitex-2.17.4.dist-info}/entry_points.txt +0 -0
- {scitex-2.17.0.dist-info → scitex-2.17.4.dist-info}/licenses/LICENSE +0 -0
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@@ -8,6 +8,22 @@ scitex/_optional_deps.py,sha256=ouMy8bw7cxl-AONRNi8xQoxwacR8irKxbcTAI18Hkzw,1014
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scitex/errors.py,sha256=Pxk8TKpGRk_QBFVB46H7k1Uxetja0OEdYjJjV_lrxRM,2874
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scitex/mcp_server.py,sha256=VNjs3N21x3_yAzfR8HhuFJJOvYOBHgvJo4tKDQdQsLE,6081
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scitex/units.py,sha256=lm2SH4PGXz-22tjUoBQhvKJDKmPD01ykSFWoCaFC384,10356
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scitex/_dev/__init__.py,sha256=ab6VDylil7CRDP9eHiD_nPeaMW5Ih5O-NpcN4-nd29M,2679
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scitex/_dev/_config.py,sha256=_UdF7gaJo1Ifkm5kRrD1EZcHel21F0zo5xTqEJeihIs,10574
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scitex/_dev/_ecosystem.py,sha256=b2J5XJBsGl4yiOeNSYM_Sue51CliHs_eyIfPZ9KL5OM,3394
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scitex/_dev/_github.py,sha256=O3Pe754MPt9uoKCs4ppjvYC3Uxy3ydkUpMLYxlPsJxM,9412
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scitex/_dev/_rtd.py,sha256=TWD1pFoIGgsiOgir2WjCNT88TbpwJ_0aescSENpFEYI,3280
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scitex/_dev/_ssh.py,sha256=z0n6-ozIFtpSga9RJN-yDkFoyVKWiv8ZfFdQYLGSbRQ,9327
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scitex/_dev/_versions.py,sha256=JoBiRkx2Z9QB7UOQDKp-gd5iwiBkq0sdAWGRq01WUSc,7405
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scitex/_dev/_dashboard/__init__.py,sha256=eApG1qoE7aWE1YZMkcMuzl585TbC5Di11DEC15twOVM,239
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scitex/_dev/_dashboard/_app.py,sha256=Vcu9RQDrDWFA9_hdGt4TuoyevgAZm7k7SBvlkyOTci0,2014
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scitex/_dev/_dashboard/_routes.py,sha256=VLKwAoyNyf6D3pM55ZJTNeJeLNJx2ZlYxBoiUNlMX_E,5498
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scitex/_dev/_dashboard/_scripts.py,sha256=mIi-NFRbiMD9bYZ9DDHcjMigY6NwTPlvXOxkG8NjwX8,16271
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scitex/_dev/_dashboard/_styles.py,sha256=kxMykqAB0hMiC5J4Ro9ykIuXcW4nKrJXCetizPHW9PA,8139
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scitex/_dev/_dashboard/_templates.py,sha256=u7Ubx4NH5BpoqIX_0WqzOFKZ14vzECBoYZQvaxdpT7Y,4140
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scitex/_dev/_dashboard/static/version-dashboard-favicon.svg,sha256=CLYEFmmEQEkfx8ffoTmMQrRWjjRMGeeccYkvcSlyw9U,7578
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scitex/_dev/_mcp/__init__.py,sha256=FdLB2ReZEHlIfVWFb1v41sm8L_ohZQSykXoC_Y6Uxeo,268
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scitex/_dev/_mcp/handlers.py,sha256=07MQ6uOqUXfX4ykcwEXxYqe38nFblVTZMp2pXpL2RMs,4649
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scitex/_mcp_resources/__init__.py,sha256=RomYv2wi1PYC8Z3ymAv46q0HygVErrSlViigLTWEuLY,1368
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scitex/_mcp_resources/_cheatsheet.py,sha256=RQJxq3MEfgUGMaF9pJ_fOw-ul5TSE32lIzxv_kOOyBY,3884
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scitex/_mcp_resources/_figrecipe.py,sha256=A8oK3FwDqSNYyYI4jwfNJ2yiH_8XVnfFjoGJtuvdDLU,3581
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scitex/_mcp_resources/_modules.py,sha256=irUo0V5ZLDiOCTw9lm8UoYXJ0jA07Cdxhq6QsdWcH68,8703
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scitex/_mcp_resources/_scholar.py,sha256=RSYt7j6bcbKtR-tOtvCtdE6J3IS8C925_c34t0Z1Es8,4689
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scitex/_mcp_resources/_session.py,sha256=lbe9W3cfPOyoq6bPOeN-jB8MwI4DnRWMpxHmpfn97SM,4590
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scitex/_mcp_tools/__init__.py,sha256=
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scitex/_mcp_tools/__init__.py,sha256=qgtYh01zlCYI_W-uTGW0nwC4UaqGr_8Ru0dAoJRA9q4,1442
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scitex/_mcp_tools/audio.py,sha256=EZ7lwz_VvrjSl1bhAUXzFgXCD141A6VfrW0_NOYtxvU,4750
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scitex/_mcp_tools/canvas.py,sha256=KG6JfguRYfatnQyj2rD8NC_ettjvq5IAL9ggBrrXoLM,4877
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scitex/_mcp_tools/capture.py,sha256=k7pwuB1vdP-VCYjutajEZEsvVAKY-8_mEYrYGWXgOo8,5658
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scitex/_mcp_tools/dataset.py,sha256=m53HCktI33m_MOXkCiN-s8xV3F8vsC7KWh75o0ZC1Qo,812
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scitex/_mcp_tools/dev.py,sha256=nO1R3-KC3dsUkVWvMFOPkD6DvZJdvK90N8DPdn4eYjI,5672
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scitex/_mcp_tools/diagram.py,sha256=pZNq0UTRlg7piq0YDD40qY5M2mqFYoRdFwmWeRCBieA,585
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scitex/_mcp_tools/introspect.py,sha256=GY9j9EUAs-CKegzfPHubPT3OGpOjcY5Rb09M3OHEIwA,6562
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scitex/_mcp_tools/plt.py,sha256=JSSmom5OHKdCMaRqecExBK2wn9tGaePJ3tiCY442GBo,9355
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scitex/audio/README.md,sha256=BirKKK30uX-5_-p3NaJTsbbosQEthwzvD7d3mRvWEMo,5065
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scitex/audio/__init__.py,sha256=QR9A2g9Lf8MHubyPfT0JsexY_GQDdv8tiOQXwHVf3EE,7111
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scitex/audio/__main__.py,sha256=IjdxdB5C_4GdxqLGUwDu-Qz_eNCUjhGgKvVTY2_Hsio,3822
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scitex/audio/_audio_check.py,sha256=
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scitex/audio/_audio_check.py,sha256=fSsEdWVrR6SgY6_aCMTD9DPoo-gcQyZH6eHhC5i01jI,4389
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scitex/audio/_branding.py,sha256=WbPMGUdCNfvT71JziSSS4bZGK9J7aQLXRWBoRgvLMzQ,5010
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scitex/audio/_cross_process_lock.py,sha256=ujQnCmVOCJxii-N6wtyWo5eflO3HW65PCmvVHgw0Ayc,3864
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scitex/audio/_relay.py,sha256=3XhLxbrbOBMSNVi6lSurbrYA9c4wEOjkDnPkBRTUuqs,6189
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scitex/cli/__init__.py,sha256=A7_PiGQ1HqcTitN5VuWxpGX9Bm-U3OTsWgujXXsr7dg,4285
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scitex/cli/audio.py,sha256=7ciqYrK--jTZmsQzQuhCA8PpHglODAtcmSIW4EKXUNY,13773
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scitex/cli/browser.py,sha256=UEumP-TyjenPQet5uo9sWcoNeVqI8-etbWiNR01I9oo,10260
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scitex/cli/capture.py,sha256=
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scitex/cli/capture.py,sha256=8K0uYescFFbOf26967Gt3PntaxTKVT7ZGnxBUS3Qz-g,14358
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scitex/cli/cloud.py,sha256=ZghVxWaHHNz0zhTz3BnZPguGwuZjslaj-Xxerg6-_6E,21398
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scitex/cli/config.py,sha256=J-oJL9MJ8Ef0mKxlctlvRDbS7eHeOyb6BImZq_PTVbc,6216
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scitex/cli/convert.py,sha256=W6Z9gaVBTPD5BhRcHWb-v3AHYcDmqvMUetu5NusP8lE,12587
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scitex/cli/dataset.py,sha256=Hw8CtlsCbYEYy3H5sWR82gRJZBOU5yKYpLjePEwmKrs,1872
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scitex/cli/dev.py,sha256=YM2FrD6OPgTcjxxybHWUYY3_0npImkRzq6oT7cKf8_U,15487
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scitex/cli/introspect.py,sha256=rzwtZi6xn3jwT__wsNTEx6BcEtkfd4RfJCjVdQ4S4dQ,18659
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scitex/cli/main.py,sha256=21a17L0_Q9f1aSb35nUGyOC3PiA2pPdDtq6tjzkAYXw,10314
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scitex/cli/mcp.py,sha256=Ebcu9QxVCS_s8QaKdU3IBuexAbF3bmUAR_9xwJ2DqpI,17881
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scitex/cli/plt.py,sha256=nEIA4-niMAArYNXArQbVBBkyO6DA8sdf8PSzdEnV1bw,11492
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scitex/cli/repro.py,sha256=kdqp01--8XXFPU_JBqmaCml5O7mqly76basQXQ8IGxs,7628
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scitex/cli/resource.py,sha256=eTcNybAn9NpeNxXG1oAoZWkVjzATxQ9t-Uw2pd806VE,8243
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scitex/cli/security.py,sha256=6f_3TO5E0jzWvDmIDcF1ZKWmLxsn6iTJCHVlYyPE6os,2785
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scitex/cli/social.py,sha256=fsLuU8MyAaLo8cArh0EuzHz19qo7av3N09sqD-sArho,9612
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scitex/cli/stats.py,sha256=u-4X2fCDQF3bF2hLcLOOefYQ96HAd-997H3v-vcLhUg,15302
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scitex/cli/template.py,sha256=omoT2qzWtyqJYqrIqJ74uyDgoQTL667ONSbwSQU4sb8,12015
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scitex/cli/tex.py,sha256=d_Fh9PXObuyjMgQ_Ap60aXwAztJbY3Pd2SvfV92toBg,9222
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scitex/cli/web.py,sha256=_XwnlsOm2MD1eyJVycfsdki4IcDnglXTO5IkZ-eb3xA,13482
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scitex/cli/writer.py,sha256=lApUnUQrclbufEMwD4m4MKMDg3ZkCBe0kTS9WuH4hsM,1953
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scitex/cli/scholar/__init__.py,sha256=zrQyQk_ixECQrAmydl9uS7-uuImegFiBf5Gz4ywWltQ,8190
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scitex/plt/README.md,sha256=tC94RzEksldrlhKd6v1UAx6uF7TFI1qwgOqD7ZkTVmw,59641
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scitex/scholar/metadata_engines/individual/CrossRefLocalEngine.py,sha256=thHe3k41EI9Td1vqeh3ebUfg9fjrq94QYnDtpwxlgNg,11147
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scitex/scholar/metadata_engines/utils/_URLDOIExtractor.py,sha256=fwQ0W8E7wSXd-33Ps3e_sIDqCKQdtGwDhpg9xwdtvBg,9175
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scitex/scholar/metadata_engines/utils/__init__.py,sha256=7JNLEqNflajR16Vrm27mR0RnZnhwwya7ajOrsfV7rus,865
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scitex/template/_clone_project.py,sha256=YZQhpExa3J6vXMnCPywb69tirdiURA5wLgSTK920ha8,5916
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scitex/template/_copy.py,sha256=hCAj7K6bR8zeQuq73WY9ZSCZ5xDyYY8mEzuInrUXKBI,2809
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scitex/verify/_hash.py,sha256=0KLzhNVGZLoenXbXunxCXth4T57y7qNbOJDwKIxPass,4387
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scitex/verify/_tracker.py,sha256=xTuqS4MDj-K6WjZmBgLENJ7BhrmPPTYV7wbkLk0e6BA,8753
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scitex/verify/_viz/__init__.py,sha256=njfg-RFK15xoYXkcwlXWxoMDZixDQcgM5qwJWuKGqHA,987
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scitex/verify/_viz/_format.py,sha256=MFAJapdJ5dFOsAtXbELuQxYbvQtLP16H16v7nC-dprY,9188
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scitex/verify/_viz/_json.py,sha256=WLBDlveTsJJjpedZ6W0cbu9ILvGatOKEL-Ne2HgtQZY,6044
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scitex/verify/_viz/_mermaid.py,sha256=2dUKSOmLkEKLTyZLas8E3pa-TyIzPSMkBSedM3Obi84,13811
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scitex/verify/_viz/_plotly.py,sha256=VHYhU7UciloMXaEw36rupng6AJ9P3gZAJxBuQBUVrhY,5287
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scitex/verify/_viz/_templates.py,sha256=HDoQ_l2hEHxTPuA5msGV_pqosaE_3wrbzK--787vyLI,7449
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scitex/verify/_viz/_utils.py,sha256=wFQmLcEvRDvCcTS6--OPB-oLqpfwv2w4-VeSV6dA6aU,1507
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scitex/web/__init__.py,sha256=MwORZLyf0uTiePNJ08KWPQatOA_FbqUiT_nbwY0KBJ4,1167
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scitex/web/download_images.py,sha256=g4sxWzg0ip5Wig7ElPo6fDz5DdXKyJnAsBFwIYoQI6g,9473
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scitex/writer/README.md,sha256=RqUMOJD7wUiQjWoiLSf_hl_Y0IAE3_xPxhlp941zYe4,1299
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scitex-2.17.
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scitex-2.17.4.dist-info/WHEEL,sha256=WLgqFyCfm_KASv4WHyYy0P3pM_m7J5L9k2skdKLirC8,87
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scitex-2.17.4.dist-info/entry_points.txt,sha256=ZtDrHnPNMnsSmAnQoCHNmk0xKotNyR2X_YFDDteupW8,497
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scitex-2.17.4.dist-info/licenses/LICENSE,sha256=TfPDBt3ar0uv_f9cqCDMZ5rIzW3CY8anRRd4PkL6ejs,34522
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scitex-2.17.4.dist-info/RECORD,,
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scitex/verify/_viz/_plotly.py
DELETED
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1
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#!/usr/bin/env python3
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# Timestamp: "2026-02-01 (ywatanabe)"
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# File: /home/ywatanabe/proj/scitex-python/src/scitex/verify/_viz/_plotly.py
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"""Plotly-based interactive visualization for verification DAG."""
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from __future__ import annotations
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from .._chain import verify_chain, verify_run
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def generate_plotly_dag(
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title: str = "Verification DAG",
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) -> go.Figure:
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"""
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Generate interactive Plotly figure for verification DAG.
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Parameters
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----------
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session_id : str, optional
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Start from this session
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title : str, optional
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Title for the figure
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-------
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plotly.graph_objects.Figure
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Interactive Plotly figure
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"""
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try:
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import plotly.graph_objects as go
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except ImportError:
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nodes = []
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edges = []
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node_colors = []
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node_texts = []
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-
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if target_file:
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chain = verify_chain(target_file)
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for i, run in enumerate(chain.runs):
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script_name = Path(run.script_path).name if run.script_path else "unknown"
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nodes.append(run.session_id)
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53
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node_texts.append(f"{script_name}<br>{run.session_id[:20]}...")
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node_colors.append("#90EE90" if run.is_verified else "#FFB6C1")
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for i in range(len(chain.runs) - 1):
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edges.append((i + 1, i)) # parent -> child
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elif session_id:
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60
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chain_ids = db.get_chain(session_id)
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for i, sid in enumerate(chain_ids):
|
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62
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run = db.get_run(sid)
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63
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verification = verify_run(sid)
|
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64
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script_name = (
|
|
65
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Path(run["script_path"]).name
|
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66
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-
if run and run.get("script_path")
|
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67
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else "unknown"
|
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68
|
-
)
|
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69
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-
nodes.append(sid)
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70
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node_texts.append(f"{script_name}<br>{sid[:20]}...")
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71
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-
node_colors.append("#90EE90" if verification.is_verified else "#FFB6C1")
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72
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-
|
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73
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-
for i in range(len(chain_ids) - 1):
|
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74
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-
edges.append((i + 1, i))
|
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75
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-
|
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76
|
-
if not nodes:
|
|
77
|
-
nodes = ["No data"]
|
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78
|
-
node_texts = ["No runs found"]
|
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79
|
-
node_colors = ["#CCCCCC"]
|
|
80
|
-
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81
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-
# Create layout positions (vertical flow)
|
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82
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-
n = len(nodes)
|
|
83
|
-
x_pos = [0.5] * n
|
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84
|
-
y_pos = [1 - i / max(n - 1, 1) for i in range(n)]
|
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85
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-
|
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86
|
-
# Create edge traces
|
|
87
|
-
edge_x = []
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88
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-
edge_y = []
|
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89
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-
for src, dst in edges:
|
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90
|
-
edge_x.extend([x_pos[src], x_pos[dst], None])
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edge_y.extend([y_pos[src], y_pos[dst], None])
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92
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-
|
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93
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-
edge_trace = go.Scatter(
|
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94
|
-
x=edge_x,
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95
|
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y=edge_y,
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96
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line=dict(width=2, color="#888"),
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hoverinfo="none",
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|
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mode="lines",
|
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99
|
-
)
|
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100
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-
|
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101
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# Create node trace
|
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102
|
-
node_trace = go.Scatter(
|
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x=x_pos,
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104
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y=y_pos,
|
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105
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mode="markers+text",
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|
106
|
-
hoverinfo="text",
|
|
107
|
-
text=node_texts,
|
|
108
|
-
textposition="middle right",
|
|
109
|
-
marker=dict(
|
|
110
|
-
size=30,
|
|
111
|
-
color=node_colors,
|
|
112
|
-
line=dict(width=2, color="#333"),
|
|
113
|
-
),
|
|
114
|
-
)
|
|
115
|
-
|
|
116
|
-
# Create figure
|
|
117
|
-
fig = go.Figure(
|
|
118
|
-
data=[edge_trace, node_trace],
|
|
119
|
-
layout=go.Layout(
|
|
120
|
-
title=dict(text=title, font=dict(size=16)),
|
|
121
|
-
showlegend=False,
|
|
122
|
-
hovermode="closest",
|
|
123
|
-
xaxis=dict(showgrid=False, zeroline=False, showticklabels=False),
|
|
124
|
-
yaxis=dict(showgrid=False, zeroline=False, showticklabels=False),
|
|
125
|
-
margin=dict(l=40, r=40, t=60, b=40),
|
|
126
|
-
plot_bgcolor="white",
|
|
127
|
-
annotations=[
|
|
128
|
-
dict(
|
|
129
|
-
text="🟢 Verified | 🔴 Failed",
|
|
130
|
-
showarrow=False,
|
|
131
|
-
xref="paper",
|
|
132
|
-
yref="paper",
|
|
133
|
-
x=0,
|
|
134
|
-
y=-0.1,
|
|
135
|
-
font=dict(size=12),
|
|
136
|
-
)
|
|
137
|
-
],
|
|
138
|
-
),
|
|
139
|
-
)
|
|
140
|
-
|
|
141
|
-
return fig
|
|
142
|
-
|
|
143
|
-
|
|
144
|
-
def render_plotly_dag(
|
|
145
|
-
output_path: Union[str, Path],
|
|
146
|
-
session_id: Optional[str] = None,
|
|
147
|
-
target_file: Optional[str] = None,
|
|
148
|
-
title: str = "Verification DAG",
|
|
149
|
-
) -> Path:
|
|
150
|
-
"""
|
|
151
|
-
Render verification DAG using Plotly.
|
|
152
|
-
|
|
153
|
-
Parameters
|
|
154
|
-
----------
|
|
155
|
-
output_path : str or Path
|
|
156
|
-
Output file path (.html or .png)
|
|
157
|
-
session_id : str, optional
|
|
158
|
-
Start from this session
|
|
159
|
-
target_file : str, optional
|
|
160
|
-
Start from session that produced this file
|
|
161
|
-
title : str, optional
|
|
162
|
-
Title for the visualization
|
|
163
|
-
|
|
164
|
-
Returns
|
|
165
|
-
-------
|
|
166
|
-
Path
|
|
167
|
-
Path to the generated file
|
|
168
|
-
"""
|
|
169
|
-
output_path = Path(output_path)
|
|
170
|
-
output_path.parent.mkdir(parents=True, exist_ok=True)
|
|
171
|
-
|
|
172
|
-
fig = generate_plotly_dag(
|
|
173
|
-
session_id=session_id,
|
|
174
|
-
target_file=target_file,
|
|
175
|
-
title=title,
|
|
176
|
-
)
|
|
177
|
-
|
|
178
|
-
ext = output_path.suffix.lower()
|
|
179
|
-
|
|
180
|
-
if ext == ".html":
|
|
181
|
-
fig.write_html(str(output_path))
|
|
182
|
-
elif ext == ".png":
|
|
183
|
-
fig.write_image(str(output_path))
|
|
184
|
-
elif ext == ".svg":
|
|
185
|
-
fig.write_image(str(output_path))
|
|
186
|
-
else:
|
|
187
|
-
fig.write_html(str(output_path.with_suffix(".html")))
|
|
188
|
-
return output_path.with_suffix(".html")
|
|
189
|
-
|
|
190
|
-
return output_path
|
|
191
|
-
|
|
192
|
-
|
|
193
|
-
# EOF
|
|
File without changes
|
|
File without changes
|
|
File without changes
|