scitex 2.16.1__py3-none-any.whl → 2.17.0__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- scitex/_mcp_resources/_cheatsheet.py +1 -1
- scitex/_mcp_resources/_modules.py +1 -1
- scitex/_mcp_tools/__init__.py +2 -0
- scitex/_mcp_tools/verify.py +256 -0
- scitex/cli/main.py +2 -0
- scitex/cli/verify.py +476 -0
- scitex/dev/plt/__init__.py +1 -1
- scitex/dev/plt/mpl/get_dir_ax.py +1 -1
- scitex/dev/plt/mpl/get_signatures.py +1 -1
- scitex/dev/plt/mpl/get_signatures_details.py +1 -1
- scitex/io/_load.py +8 -1
- scitex/io/_save.py +12 -0
- scitex/session/README.md +2 -2
- scitex/session/__init__.py +1 -0
- scitex/session/_decorator.py +57 -33
- scitex/session/_lifecycle/__init__.py +23 -0
- scitex/session/_lifecycle/_close.py +225 -0
- scitex/session/_lifecycle/_config.py +112 -0
- scitex/session/_lifecycle/_matplotlib.py +83 -0
- scitex/session/_lifecycle/_start.py +246 -0
- scitex/session/_lifecycle/_utils.py +186 -0
- scitex/session/_manager.py +40 -3
- scitex/session/template.py +1 -1
- scitex/template/_templates/plt.py +1 -1
- scitex/template/_templates/session.py +1 -1
- scitex/verify/README.md +312 -0
- scitex/verify/__init__.py +212 -0
- scitex/verify/_chain.py +369 -0
- scitex/verify/_db.py +600 -0
- scitex/verify/_hash.py +187 -0
- scitex/verify/_integration.py +127 -0
- scitex/verify/_rerun.py +253 -0
- scitex/verify/_tracker.py +330 -0
- scitex/verify/_visualize.py +48 -0
- scitex/verify/_viz/__init__.py +56 -0
- scitex/verify/_viz/_colors.py +84 -0
- scitex/verify/_viz/_format.py +302 -0
- scitex/verify/_viz/_json.py +192 -0
- scitex/verify/_viz/_mermaid.py +440 -0
- scitex/verify/_viz/_plotly.py +193 -0
- scitex/verify/_viz/_templates.py +246 -0
- scitex/verify/_viz/_utils.py +56 -0
- {scitex-2.16.1.dist-info → scitex-2.17.0.dist-info}/METADATA +1 -1
- {scitex-2.16.1.dist-info → scitex-2.17.0.dist-info}/RECORD +47 -23
- scitex/session/_lifecycle.py +0 -827
- {scitex-2.16.1.dist-info → scitex-2.17.0.dist-info}/WHEEL +0 -0
- {scitex-2.16.1.dist-info → scitex-2.17.0.dist-info}/entry_points.txt +0 -0
- {scitex-2.16.1.dist-info → scitex-2.17.0.dist-info}/licenses/LICENSE +0 -0
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#!/usr/bin/env python3
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# Timestamp: "2026-02-01 (ywatanabe)"
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# File: /home/ywatanabe/proj/scitex-python/src/scitex/verify/_viz/_templates.py
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"""HTML templates for verification DAG visualization."""
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from __future__ import annotations
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from datetime import datetime
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def get_timestamp() -> str:
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"""Get current timestamp for footer."""
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return datetime.now().strftime("%Y-%m-%d %H:%M:%S")
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def get_html_template(title: str, mermaid_code: str) -> str:
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"""
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Generate sleek HTML template with icons for verification DAG.
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Parameters
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----------
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title : str
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Page title
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mermaid_code : str
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Mermaid diagram code
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Returns
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-------
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str
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Complete HTML document
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"""
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timestamp = get_timestamp()
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return f"""<!DOCTYPE html>
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<html>
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<head>
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<meta charset="UTF-8">
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<title>{title}</title>
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<script src="https://cdn.jsdelivr.net/npm/mermaid/dist/mermaid.min.js"></script>
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<link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/6.5.1/css/all.min.css">
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<style>
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:root {{
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--verified-bg: #d4edda;
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--verified-border: #28a745;
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--verified-text: #155724;
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--failed-bg: #f8d7da;
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--failed-border: #dc3545;
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--failed-text: #721c24;
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--file-bg: #fff3cd;
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--file-border: #ffc107;
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--script-bg: #cce5ff;
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--script-border: #4a6baf;
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}}
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body {{
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font-family: -apple-system, BlinkMacSystemFont, 'Segoe UI', Roboto, sans-serif;
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margin: 0;
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padding: 20px;
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background: linear-gradient(135deg, #667eea 0%, #764ba2 100%);
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min-height: 100vh;
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}}
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.container {{
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max-width: 1400px;
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margin: 0 auto;
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background: white;
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padding: 30px;
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border-radius: 16px;
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box-shadow: 0 10px 40px rgba(0,0,0,0.2);
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}}
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.header {{
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display: flex;
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align-items: center;
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gap: 15px;
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margin-bottom: 25px;
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padding-bottom: 15px;
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border-bottom: 3px solid var(--script-border);
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}}
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.header-icon {{
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width: 48px;
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height: 48px;
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background: var(--script-border);
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border-radius: 12px;
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display: flex;
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align-items: center;
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justify-content: center;
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color: white;
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font-size: 24px;
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}}
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h1 {{
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color: #333;
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margin: 0;
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font-size: 1.8rem;
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}}
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.legend {{
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display: flex;
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flex-wrap: wrap;
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gap: 20px;
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margin: 20px 0;
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padding: 15px;
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background: linear-gradient(to right, #f8f9fa, #e9ecef);
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border-radius: 12px;
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border: 1px solid #dee2e6;
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}}
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.legend-item {{
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display: flex;
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align-items: center;
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gap: 10px;
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padding: 8px 15px;
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background: white;
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border-radius: 8px;
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box-shadow: 0 2px 4px rgba(0,0,0,0.05);
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}}
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.legend-icon {{
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width: 28px;
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height: 28px;
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border-radius: 6px;
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display: flex;
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align-items: center;
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justify-content: center;
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font-size: 14px;
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}}
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.legend-icon.verified {{
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background: var(--verified-bg);
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color: var(--verified-text);
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border: 2px solid var(--verified-border);
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}}
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.legend-icon.from-scratch {{
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background: var(--verified-bg);
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color: var(--verified-text);
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border: 3px solid var(--verified-border);
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box-shadow: 0 0 0 2px var(--verified-bg);
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}}
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.legend-icon.failed {{
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background: var(--failed-bg);
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color: var(--failed-text);
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border: 2px solid var(--failed-border);
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}}
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.legend-icon.file {{
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background: var(--file-bg);
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color: #856404;
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border: 2px solid var(--file-border);
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}}
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.legend-icon.script {{
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background: var(--script-bg);
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color: #004085;
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border: 2px solid var(--script-border);
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}}
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.legend-text {{
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font-size: 0.9rem;
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color: #495057;
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}}
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.mermaid {{
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margin: 25px 0;
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padding: 20px;
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background: #fafafa;
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border-radius: 12px;
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border: 1px solid #e9ecef;
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overflow-x: auto;
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}}
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.footer {{
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margin-top: 25px;
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padding-top: 15px;
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border-top: 1px solid #e9ecef;
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display: flex;
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justify-content: space-between;
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align-items: center;
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color: #6c757d;
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font-size: 0.85rem;
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}}
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.footer-brand {{
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display: flex;
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align-items: center;
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gap: 8px;
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}}
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.footer-brand i {{
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color: var(--script-border);
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}}
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</style>
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</head>
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<body>
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<div class="container">
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<div class="header">
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<div class="header-icon">
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<i class="fas fa-project-diagram"></i>
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</div>
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<h1>{title}</h1>
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</div>
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<div class="legend">
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<div class="legend-item">
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<span style="font-size:1.2em">🐍</span>
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<span class="legend-text">Python</span>
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</div>
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<div class="legend-item">
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<span style="font-size:1.2em">📊</span>
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<span class="legend-text">CSV</span>
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</div>
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<div class="legend-item">
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<span style="font-size:1.2em">📋</span>
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<span class="legend-text">JSON</span>
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</div>
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<div class="legend-item">
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<span style="font-size:1.2em">⚙️</span>
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<span class="legend-text">Config</span>
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</div>
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<div class="legend-item">
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<div class="legend-icon verified"><i class="fas fa-check"></i></div>
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<span class="legend-text">Verified</span>
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</div>
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<div class="legend-item">
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<div class="legend-icon from-scratch"><i class="fas fa-check-double"></i></div>
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<span class="legend-text">From-scratch</span>
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</div>
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<div class="legend-item">
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<div class="legend-icon failed"><i class="fas fa-times"></i></div>
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<span class="legend-text">Failed</span>
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</div>
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</div>
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<div class="mermaid">
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{mermaid_code}
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</div>
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<div class="footer">
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<div class="footer-brand">
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<i class="fas fa-flask"></i>
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<span>Generated by SciTeX Verify</span>
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</div>
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<div>
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<i class="far fa-clock"></i> Generated at: {timestamp}
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</div>
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</div>
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</div>
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<script>
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mermaid.initialize({{
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startOnLoad: true,
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theme: 'default',
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flowchart: {{
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curve: 'basis',
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padding: 20,
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nodeSpacing: 50,
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rankSpacing: 60
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}}
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}});
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</script>
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</body>
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</html>"""
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# EOF
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#!/usr/bin/env python3
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# Timestamp: "2026-02-01 (ywatanabe)"
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# File: /home/ywatanabe/proj/scitex-python/src/scitex/verify/_viz/_utils.py
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"""Utility functions for verification visualization."""
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from __future__ import annotations
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from typing import Any, Dict, List
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from .._chain import VerificationStatus, verify_run
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from ._colors import Colors
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from ._format import format_run_detailed
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def print_verification_summary(
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runs: List[Dict[str, Any]],
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show_all: bool = False,
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) -> None:
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"""
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Print a summary of verification status to stdout.
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Parameters
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----------
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runs : list of dict
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List of run records
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show_all : bool
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Show all runs (not just problematic ones)
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"""
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verified = 0
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mismatched = 0
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missing = 0
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print(f"\n{Colors.BOLD}Verification Summary{Colors.RESET}")
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print("=" * 50)
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for run in runs:
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v = verify_run(run["session_id"])
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if v.status == VerificationStatus.VERIFIED:
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verified += 1
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if show_all:
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print(format_run_detailed(v))
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elif v.status == VerificationStatus.MISMATCH:
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mismatched += 1
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print(format_run_detailed(v))
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else:
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missing += 1
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print(format_run_detailed(v))
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print()
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print(f"{Colors.GREEN}●{Colors.RESET} Verified: {verified}")
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print(f"{Colors.RED}●{Colors.RESET} Mismatch: {mismatched}")
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print(f"{Colors.YELLOW}○{Colors.RESET} Missing: {missing}")
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print()
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# EOF
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Metadata-Version: 2.4
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Name: scitex
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Version: 2.
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Version: 2.17.0
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Summary: A comprehensive Python library for scientific computing and data analysis
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Project-URL: Homepage, https://github.com/ywatanabe1989/scitex-python
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scitex/mcp_server.py,sha256=VNjs3N21x3_yAzfR8HhuFJJOvYOBHgvJo4tKDQdQsLE,6081
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scitex/units.py,sha256=lm2SH4PGXz-22tjUoBQhvKJDKmPD01ykSFWoCaFC384,10356
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scitex/_mcp_resources/__init__.py,sha256=RomYv2wi1PYC8Z3ymAv46q0HygVErrSlViigLTWEuLY,1368
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scitex/_mcp_resources/_cheatsheet.py,sha256=
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scitex/_mcp_resources/_figrecipe.py,sha256=A8oK3FwDqSNYyYI4jwfNJ2yiH_8XVnfFjoGJtuvdDLU,3581
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scitex/_mcp_resources/_formats.py,sha256=EyNZKtmX6dg6vK1Gk0EmrSSKH5d9yc3RMqZtSP-Op0I,2923
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scitex/_mcp_resources/_modules.py,sha256=
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scitex/_mcp_resources/_scholar.py,sha256=RSYt7j6bcbKtR-tOtvCtdE6J3IS8C925_c34t0Z1Es8,4689
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scitex/_mcp_resources/_session.py,sha256=lbe9W3cfPOyoq6bPOeN-jB8MwI4DnRWMpxHmpfn97SM,4590
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scitex/_mcp_tools/__init__.py,sha256=
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scitex/_mcp_tools/__init__.py,sha256=w73wqTagrlMAuQxhpUM3PPSvI8Ue04bq7NiuO3e4kuc,1378
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scitex/_mcp_tools/audio.py,sha256=EZ7lwz_VvrjSl1bhAUXzFgXCD141A6VfrW0_NOYtxvU,4750
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scitex/_mcp_tools/canvas.py,sha256=KG6JfguRYfatnQyj2rD8NC_ettjvq5IAL9ggBrrXoLM,4877
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scitex/_mcp_tools/capture.py,sha256=k7pwuB1vdP-VCYjutajEZEsvVAKY-8_mEYrYGWXgOo8,5658
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scitex/_mcp_tools/stats.py,sha256=U2pGC0NTfzb0stKGafVNdgZhIYovYi6ti1EoG4f4dn4,6139
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scitex/_mcp_tools/template.py,sha256=NhfIaVYo7JvssZk_dUvzosvcc-qjnxFr69dV1DmAlgY,3102
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scitex/_mcp_tools/ui.py,sha256=MC9gA0UapD68S1uPJtWq5Zfua6IDQKV-QL3rkrzrArA,2320
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scitex/_mcp_tools/verify.py,sha256=Iy3WfQytdukdQ7yK8T3fE6XtYfgMhUYsfKzcK0yANro,7541
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scitex/_mcp_tools/writer.py,sha256=uNbmenb5jMGKJnJ2hzm6JSQof2sYl1GmbCtuYcJL60k,863
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scitex/ai/README.md,sha256=EdRrmZRt2ARgVKQgKO2YqMktb9MIqZK35RHAu7NskmY,7060
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scitex/ai/__init__.py,sha256=hHNbcIXyMAjaLqCoLhyKKc6uWc5dz8jVxrfcy6bTS6A,1822
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scitex/cli/convert.py,sha256=W6Z9gaVBTPD5BhRcHWb-v3AHYcDmqvMUetu5NusP8lE,12587
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scitex/cli/dataset.py,sha256=Hw8CtlsCbYEYy3H5sWR82gRJZBOU5yKYpLjePEwmKrs,1872
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scitex/cli/introspect.py,sha256=rzwtZi6xn3jwT__wsNTEx6BcEtkfd4RfJCjVdQ4S4dQ,18659
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scitex/cli/main.py,sha256=
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scitex/cli/main.py,sha256=6OSQNh40bW8iX1COhxcx7SAX8r84vnYqUcwt3sObD6w,10280
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scitex/cli/mcp.py,sha256=Ebcu9QxVCS_s8QaKdU3IBuexAbF3bmUAR_9xwJ2DqpI,17881
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scitex/cli/plt.py,sha256=nEIA4-niMAArYNXArQbVBBkyO6DA8sdf8PSzdEnV1bw,11492
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scitex/cli/repro.py,sha256=kdqp01--8XXFPU_JBqmaCml5O7mqly76basQXQ8IGxs,7628
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scitex/cli/stats.py,sha256=2n5iz5CXKBqqQk-f-HdOYTs1abYAYMCRPw2O7ZwYFY8,14443
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scitex/cli/template.py,sha256=omoT2qzWtyqJYqrIqJ74uyDgoQTL667ONSbwSQU4sb8,12015
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scitex/cli/tex.py,sha256=d_Fh9PXObuyjMgQ_Ap60aXwAztJbY3Pd2SvfV92toBg,9222
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scitex/cli/verify.py,sha256=8bzXa5q-h2voMlDTwFjKtKcfvI9S5lgdFCLCemVugpw,15271
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scitex/cli/web.py,sha256=_XwnlsOm2MD1eyJVycfsdki4IcDnglXTO5IkZ-eb3xA,13482
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scitex/cli/writer.py,sha256=lApUnUQrclbufEMwD4m4MKMDg3ZkCBe0kTS9WuH4hsM,1953
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scitex/cli/scholar/__init__.py,sha256=zrQyQk_ixECQrAmydl9uS7-uuImegFiBf5Gz4ywWltQ,8190
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@@ -515,7 +517,7 @@ scitex/dev/_reload.py,sha256=RKmVNcHsdZtDslj11xn02M4HSOKey0Naj-IHlnj4-GM,1361
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scitex/dev/cv/__init__.py,sha256=_34yhCuVmgrxz7DLFPyvZPtJF-AMGXfvtGv_G-LJop0,1264
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scitex/dev/cv/_compose.py,sha256=VJFU0igwTjV2wqqdDOWY4cvNJrFtq8F0sERMvzRpjHA,8882
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scitex/dev/cv/_title_card.py,sha256=42iuVkVyT-452S4gWoxwJU87jIHDJUl_bwrUd4GBrt0,8275
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scitex/dev/plt/__init__.py,sha256=
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scitex/dev/plt/__init__.py,sha256=Il0bLME0jIPOYGwg27bdb_Fqc8y7MdjwRZ3LcdpFR0o,9856
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scitex/dev/plt/plot_mpl_axhline.py,sha256=ECGTgIGgpU82llOHVqur0gzSl1NUHjvyaB85cZewKW8,707
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scitex/dev/plt/plot_mpl_axhspan.py,sha256=WetEGSzRbppTvn5VprGNglKuzLMoM8tFXg_N0jMFgFM,704
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scitex/dev/plt/plot_mpl_axvline.py,sha256=hLCis2B5ruGv9Pr7uJ4W15NcwiCVtchclZK_1PyDirc,700
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scitex/dev/plt/demo_plotters/plot_stx_shaded_line.py,sha256=Ss4RD0qxO_uH1h_NL_meSH1-_ZXfOKnV1MAT48tegnI,718
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scitex/dev/plt/demo_plotters/plot_stx_violin.py,sha256=oEAWE4RwG7SQ3JlVuzfSbTFDF02VRb_vE4qBLU3tMu4,680
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scitex/dev/plt/demo_plotters/plot_stx_violinplot.py,sha256=wafuzIKs9WJRfXcH4bxxuigqCh75nxcZDfFq-9P1zxA,687
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scitex/dev/plt/mpl/get_signatures.py,sha256
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scitex/dev/plt/mpl/get_signatures_details.py,sha256=
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scitex/dev/plt/mpl/get_dir_ax.py,sha256=VdiJwyx6RguSR0nf8rTeZDyHbS-X-V2uf6Hh4vh64R8,894
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scitex/dev/plt/mpl/get_signatures.py,sha256=SxenIbpS0OLaGro23yqxYCgaRRiOTkxizjtxdsjB5E0,4811
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scitex/dev/plt/mpl/get_signatures_details.py,sha256=De7-QDhl3bhG8F3jW07jojp2N4SG31q2D4M7yqp4HQI,19197
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scitex/diagram/README.md,sha256=6NDrGTze_CVJ7qNcQAFjz9i-llQhf9uZVYO34iYqAzw,4836
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scitex/diagram/__init__.py,sha256=5nFKqI4g9NsSiXlCLMBSr9FtrVVdAv3T1v9_J6WYw-I,1623
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scitex/diagram/mcp_server.py,sha256=veXwMdUbS63MEikXu0rulsFyIdSP44f6MexDwEj6PuU,848
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scitex/io/_flush.py,sha256=jwrMub6mKqvFPcwAN_fm0fYG6EbVbtl69iYTItG8_eE,562
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scitex/io/_load.py,sha256=
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scitex/io/_metadata.py,sha256=_Xw8YtDWc8T2tWBIwXB6j3fjpUQz2c3M8qM9UhSQXzk,1172
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scitex/io/_save.py,sha256=
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scitex/io/_save.py,sha256=yxQUCUI-p4fj-SxpZtP_PdN2U-CwhqZBsRqsL6r426g,15978
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scitex/io/_load_modules/_H5Explorer.py,sha256=AkFpSMvAQFAuZ1FH6M4nHhH2TAsuxpvdsiihRUjmk54,10281
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scitex/io/_load_modules/_ZarrExplorer.py,sha256=nh9WaxnVTSU5hK7fsZrj64pCiJBD8vkacBV3TaKpFW0,3320
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scitex/io/_load_modules/__init__.py,sha256=4uPppcQMBc-7Yjy4k1MF7tvJcHiQyP-xS1L1SE9et80,1177
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scitex/verify/__init__.py,sha256=GTG-j9bHw3WEc5nAAeXyIM0SBOf8VOK_8f1mTxOvYdc,5000
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scitex/verify/_chain.py,sha256=BZpgczN0b0t7i-3WXNmI1Yf0odmCdOvQz1mrrVyfgok,10038
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scitex/verify/_db.py,sha256=lezrlc_s0Rd107iHPafP0u69iGIM0MQgBuUAuMb-tzs,18488
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scitex/verify/_hash.py,sha256=0KLzhNVGZLoenXbXunxCXth4T57y7qNbOJDwKIxPass,4387
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scitex/verify/_integration.py,sha256=mgBrAYFYf0CWzvitrAu3rcXzPfKY7ECDV5Hqim-9Ayg,3029
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scitex/verify/_rerun.py,sha256=7Oc3ld-h8_E5pkxWIfy_hzsbQM-ZjWU9NJIJcGDUCbs,7988
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scitex/verify/_tracker.py,sha256=xTuqS4MDj-K6WjZmBgLENJ7BhrmPPTYV7wbkLk0e6BA,8753
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scitex/verify/_visualize.py,sha256=62TN6pd_rTiAD95mpHiLBpZe-UfUkOS-fDE2s7e9mG0,1092
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scitex/verify/_viz/__init__.py,sha256=RBP4peOqcH9YUlJQoIgsLity0CL0ue2Bw-oYrj8MSVU,1486
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scitex/verify/_viz/_colors.py,sha256=LsXQAucol6MFkxOewLyOElldHEGfX0mMkUDe0KDcI0g,2257
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scitex/verify/_viz/_format.py,sha256=MFAJapdJ5dFOsAtXbELuQxYbvQtLP16H16v7nC-dprY,9188
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scitex/verify/_viz/_json.py,sha256=WLBDlveTsJJjpedZ6W0cbu9ILvGatOKEL-Ne2HgtQZY,6044
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scitex/verify/_viz/_mermaid.py,sha256=2dUKSOmLkEKLTyZLas8E3pa-TyIzPSMkBSedM3Obi84,13811
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scitex/verify/_viz/_plotly.py,sha256=VHYhU7UciloMXaEw36rupng6AJ9P3gZAJxBuQBUVrhY,5287
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scitex/verify/_viz/_templates.py,sha256=HDoQ_l2hEHxTPuA5msGV_pqosaE_3wrbzK--787vyLI,7449
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scitex/verify/_viz/_utils.py,sha256=wFQmLcEvRDvCcTS6--OPB-oLqpfwv2w4-VeSV6dA6aU,1507
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scitex/web/__init__.py,sha256=MwORZLyf0uTiePNJ08KWPQatOA_FbqUiT_nbwY0KBJ4,1167
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scitex/web/_scraping.py,sha256=6jfguvscysZySpuRIQOaq_R8mSOMUloekdbYxKJNY-g,4336
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scitex/web/_search_pubmed.py,sha256=tiRAeV8V5L-0G8pkIheIaY5_46KCYtbSwj4FHFU0RB0,15285
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scitex/web/download_images.py,sha256=g4sxWzg0ip5Wig7ElPo6fDz5DdXKyJnAsBFwIYoQI6g,9473
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scitex/writer/README.md,sha256=RqUMOJD7wUiQjWoiLSf_hl_Y0IAE3_xPxhlp941zYe4,1299
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scitex/writer/__init__.py,sha256=jQqdIyvQhknySoUAMKreBhAa1KwZ0ieW8SYCppBukts,3301
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scitex-2.17.0.dist-info/METADATA,sha256=m7BWKnGQz-nsEgjSsDYDHnrDDKKYBDCt0UT3TB5Tdj8,26534
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scitex-2.17.0.dist-info/WHEEL,sha256=WLgqFyCfm_KASv4WHyYy0P3pM_m7J5L9k2skdKLirC8,87
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scitex-2.17.0.dist-info/entry_points.txt,sha256=ZtDrHnPNMnsSmAnQoCHNmk0xKotNyR2X_YFDDteupW8,497
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scitex-2.17.0.dist-info/licenses/LICENSE,sha256=TfPDBt3ar0uv_f9cqCDMZ5rIzW3CY8anRRd4PkL6ejs,34522
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scitex-2.17.0.dist-info/RECORD,,
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