scitex 2.15.3__py3-none-any.whl → 2.16.0__py3-none-any.whl

scitex-2.15.3.dist-info/METADATA

@@ -1,667 +0,0 @@
-Metadata-Version: 2.4
-Name: scitex
-Version: 2.15.3
-Summary: A comprehensive Python library for scientific computing and data analysis
-Project-URL: Homepage, https://github.com/ywatanabe1989/scitex-python
-Project-URL: Documentation, https://scitex.readthedocs.io
-Project-URL: Repository, https://github.com/ywatanabe1989/scitex-python
-Project-URL: Bug Tracker, https://github.com/ywatanabe1989/scitex-python/issues
-Author-email: Yusuke Watanabe <ywatanabe@scitex.ai>
-License: AGPL-3.0
-License-File: LICENSE
-Keywords: data-analysis,machine-learning,neural-networks,research,scientific-computing,signal-processing
-Classifier: Development Status :: 4 - Beta
-Classifier: Intended Audience :: Developers
-Classifier: Intended Audience :: Science/Research
-Classifier: License :: OSI Approved :: GNU Affero General Public License v3
-Classifier: Operating System :: OS Independent
-Classifier: Programming Language :: Python :: 3
-Classifier: Programming Language :: Python :: 3.10
-Classifier: Programming Language :: Python :: 3.11
-Classifier: Programming Language :: Python :: 3.12
-Classifier: Programming Language :: Python :: 3.13
-Classifier: Topic :: Scientific/Engineering
-Classifier: Topic :: Scientific/Engineering :: Artificial Intelligence
-Classifier: Topic :: Scientific/Engineering :: Information Analysis
-Classifier: Topic :: Software Development :: Libraries :: Python Modules
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-Description-Content-Type: text/markdown
-
-<!-- ---
-!-- Timestamp: 2026-01-20 09:23:14
-!-- Author: ywatanabe
-!-- File: /home/ywatanabe/proj/scitex-python/README.md
-!-- --- -->
-
-<p align="center">
-  <a href="https://scitex.ai">
-    <img src="docs/assets/images/scitex-logo-blue-cropped.png" alt="SciTeX" width="400">
-  </a>
-</p>
-
-<p align="center">
-  <a href="https://badge.fury.io/py/scitex"><img src="https://badge.fury.io/py/scitex.svg" alt="PyPI version"></a>
-  <a href="https://pypi.org/project/scitex/"><img src="https://img.shields.io/pypi/pyversions/scitex.svg" alt="Python Versions"></a>
-  <a href="https://github.com/ywatanabe1989/scitex-python/blob/main/LICENSE"><img src="https://img.shields.io/github/license/ywatanabe1989/scitex-python" alt="License"></a>
-  <img src="https://img.shields.io/badge/uv-recommended-blue" alt="uv recommended">
-</p>
-
-<p align="center">
-  <a href="https://scitex.ai">scitex.ai</a> · <code>pip install scitex</code>
-</p>
-
----
-
-**Modular Python toolkit for scientific research automation — with verification features to ease peer review.**
-
-Empowers both human researchers and AI agents. Each module works independently and adapts to various academic workflows, handling primary and secondary research with real or simulated data.
-
-## 🎬 Demo
-
-**40 min, zero human intervention** — AI agent conducts full research pipeline:
-
-> Literature search → Data analysis → Statistics → Figures → 21-page manuscript → Peer review simulation
-
-<p align="center">
-  <a href="https://scitex.ai/demos/watch/scitex-automated-research/" title="▶ Watch full demo at scitex.ai/demos/">
-    <img src="docs/assets/images/scitex-demo.gif" alt="SciTeX Demo" width="800">
-  </a>
-</p>
-
-## 📦 Installation
-
-``` bash
-uv pip install scitex[all]     # Recommended: Full installation
-uv pip install scitex          # Core only
-```
-
-## Three Interfaces
-
-| Interface | For | Description |
-|-----------|-----|-------------|
-| 🐍 **Python API** | Human researchers | `import scitex as stx` — 70% less code |
-| 🖥️ **CLI Commands** | Terminal users | `scitex scholar fetch`, `scitex stats run` |
-| 🔧 **MCP Tools** | AI agents | 145 tools for Claude/GPT integration |
-
-<details>
-<summary><strong>🐍 Python API</strong></summary>
-
-<br>
-
-**`@stx.session`** — Reproducible Experiment Tracking
-
-```python
-import scitex as stx
-
-@stx.session
-def main(filename="demo.jpg"):
-    fig, ax = stx.plt.subplots()
-    ax.plot_line(t, signal)
-    ax.set_xyt("Time (s)", "Amplitude", "Title")
-    stx.io.save(fig, filename)
-    return 0
-```
-
-**Output**:
-```
-script_out/FINISHED_SUCCESS/2025-01-08_12-30-00_AbC1/
-├── demo.jpg                    # Figure with embedded metadata
-├── demo.csv                    # Auto-exported plot data
-├── CONFIGS/CONFIG.yaml         # Reproducible parameters
-└── logs/{stdout,stderr}.log    # Execution logs
-```
-
-**`stx.io`** — Universal File I/O (30+ formats)
-
-```python
-stx.io.save(df, "output.csv")
-stx.io.save(fig, "output.jpg")
-df = stx.io.load("output.csv")
-```
-
-**`stx.stats`** — Publication-Ready Statistics (23 tests)
-
-```python
-result = stx.stats.test_ttest_ind(group1, group2, return_as="dataframe")
-# Includes: p-value, effect size, CI, normality check, power
-```
-
-→ **[Full module status](./docs/MODULE_STATUS.md)**
-
-</details>
-
-<details>
-<summary><strong>🖥️ CLI Commands</strong></summary>
-
-<br>
-
-```bash
-scitex --help-recursive              # Show all commands
-scitex scholar fetch "10.1038/..."   # Download paper by DOI
-scitex scholar bibtex refs.bib       # Enrich BibTeX
-scitex stats recommend               # Suggest statistical tests
-scitex audio speak "Done"            # Text-to-speech
-scitex capture snap                  # Screenshot
-```
-
-→ **[Full CLI reference](./docs/CLI_COMMANDS.md)**
-
-</details>
-
-<details>
-<summary><strong>🔧 MCP Tools — 145 tools for AI Agents</strong></summary>
-
-<br>
-
-Turn AI agents into autonomous scientific researchers.
-
-**Typical workflow**: Scholar (find papers) → Stats (analyze) → Plt (visualize) → Writer (manuscript) → Capture (verify)
-
-| Category | Tools | Description |
-|----------|-------|-------------|
-| scholar | 23 | PDF download, metadata enrichment |
-| stats | 10 | Automated statistical testing |
-| plt | 9 | Matplotlib figure creation |
-| capture | 12 | Screen monitoring and capture |
-| audio | 10 | Text-to-speech, audio playback |
-| introspect | 11 | Python introspection |
-| diagram | 7 | Mermaid and flowchart creation |
-| canvas | 7 | Scientific figure canvas |
-| social | 9 | Social media posting |
-| template | 4 | Project scaffolding |
-| ui | 5 | Notifications |
-| writer | 1 | LaTeX manuscript compilation |
-
-**Claude Desktop** (`~/.config/claude/claude_desktop_config.json`):
-
-```json
-{
-  "mcpServers": {
-    "scitex": {
-      "command": "scitex",
-      "args": ["mcp", "start"]
-    }
-  }
-}
-```
-
-→ **[Full MCP tool reference](./docs/MCP_TOOLS.md)**
-
-</details>
-
-## 🧩 Standalone Packages
-
-SciTeX integrates several standalone packages that can be used independently:
-
-| Package | scitex Module | Description |
-|---------|--------------|-------------|
-| [figrecipe](https://github.com/ywatanabe1989/figrecipe) | `scitex.plt` | Publication-ready matplotlib figures |
-| [crossref-local](https://github.com/ywatanabe1989/crossref-local) | `scitex.scholar.crossref_scitex` | Local CrossRef database (167M+ papers) |
-| [socialia](https://github.com/ywatanabe1989/socialia) | `scitex.social` | Social media posting (Twitter, LinkedIn) |
-| [scitex-writer](https://github.com/ywatanabe1989/scitex-writer) | `scitex.writer` | LaTeX manuscript compilation |
-
-Each package works standalone or as part of scitex:
-
-```bash
-pip install figrecipe        # Use independently
-pip install scitex[plt]      # Or via scitex
-```
-
-## 📖 Documentation
-
-- **[Read the Docs](https://scitex.readthedocs.io/)**: Complete API reference
-- **[Example Notebooks](./examples/notebooks/)**: 25+ Jupyter notebooks
-
-## 🤝 Contributing
-
-We welcome contributions! See [CONTRIBUTING.md](CONTRIBUTING.md).
-
----
-
-<p align="center">
-  <a href="https://scitex.ai" target="_blank"><img src="docs/assets/images/scitex-icon-navy-inverted.png" alt="SciTeX" width="40"/></a>
-  <br>
-  AGPL-3.0 · ywatanabe@scitex.ai
-</p>
-
-<!-- EOF -->