scitex 2.15.3__py3-none-any.whl → 2.15.5__py3-none-any.whl

scitex/stats/mcp_server.py

@@ -3,8 +3,12 @@
 # File: src/scitex/stats/mcp_server.py
 # ----------------------------------------
 
-"""
-MCP Server for SciTeX Stats - Statistical Testing Framework
+"""MCP Server for SciTeX Stats - Statistical Testing Framework.
+
+.. deprecated::
+    This standalone server is deprecated. Use the unified scitex MCP server:
+    CLI: scitex serve
+    Python: from scitex.mcp_server import run_server
 
 Provides tools for:
 - Recommending appropriate statistical tests
@@ -20,6 +24,15 @@ Provides tools for:
 
 from __future__ import annotations
 
+import warnings
+
+warnings.warn(
+    "scitex.stats.mcp_server is deprecated. Use 'scitex serve' or "
+    "'from scitex.mcp_server import run_server' for the unified MCP server.",
+    DeprecationWarning,
+    stacklevel=2,
+)
+
 import asyncio
 
 # Graceful MCP dependency handling
@@ -380,7 +393,7 @@ async def _run_server():
 
 
 def main():
-    """Main entry point for the MCP server."""
+    """Run the MCP server."""
     if not MCP_AVAILABLE:
         import sys
 

scitex/template/mcp_server.py

@@ -3,8 +3,12 @@
 # File: src/scitex/template/mcp_server.py
 # ----------------------------------------
 
-"""
-MCP Server for SciTeX Template - Project Scaffolding Framework
+"""MCP Server for SciTeX Template - Project Scaffolding Framework.
+
+.. deprecated::
+    This standalone server is deprecated. Use the unified scitex MCP server:
+    CLI: scitex serve
+    Python: from scitex.mcp_server import run_server
 
 Provides tools for:
 - Listing available project templates
@@ -15,6 +19,15 @@ Provides tools for:
 
 from __future__ import annotations
 
+import warnings
+
+warnings.warn(
+    "scitex.template.mcp_server is deprecated. Use 'scitex serve' or "
+    "'from scitex.mcp_server import run_server' for the unified MCP server.",
+    DeprecationWarning,
+    stacklevel=2,
+)
+
 import asyncio
 
 # Graceful MCP dependency handling
@@ -161,7 +174,7 @@ async def _run_server():
 
 
 def main():
-    """Main entry point for the MCP server."""
+    """Run the MCP server."""
     if not MCP_AVAILABLE:
         import sys
 

scitex/ui/mcp_server.py

@@ -2,14 +2,27 @@
 # Timestamp: "2026-01-13 (ywatanabe)"
 # File: /home/ywatanabe/proj/scitex-code/src/scitex/ui/mcp_server.py
 
-"""
-MCP Server for SciTeX Notifications - Multi-backend alert system.
+"""MCP Server for SciTeX Notifications - Multi-backend alert system.
+
+.. deprecated::
+    This standalone server is deprecated. Use the unified scitex MCP server:
+    CLI: scitex serve
+    Python: from scitex.mcp_server import run_server
 
 Supports: audio, desktop, email, matplotlib, playwright, webhook backends.
 """
 
 from __future__ import annotations
 
+import warnings
+
+warnings.warn(
+    "scitex.ui.mcp_server is deprecated. Use 'scitex serve' or "
+    "'from scitex.mcp_server import run_server' for the unified MCP server.",
+    DeprecationWarning,
+    stacklevel=2,
+)
+
 import asyncio
 from datetime import datetime
 
@@ -126,7 +139,7 @@ async def _run_server():
 
 
 def main():
-    """Main entry point for the MCP server."""
+    """Run the MCP server."""
     if not MCP_AVAILABLE:
         import sys
 

{scitex-2.15.3.dist-info → scitex-2.15.5.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: scitex
-Version: 2.15.3
+Version: 2.15.5
 Summary: A comprehensive Python library for scientific computing and data analysis
 Project-URL: Homepage, https://github.com/ywatanabe1989/scitex-python
 Project-URL: Documentation, https://scitex.readthedocs.io

{scitex-2.15.3.dist-info → scitex-2.15.5.dist-info}/RECORD

@@ -8,20 +8,21 @@ scitex/_optional_deps.py,sha256=ouMy8bw7cxl-AONRNi8xQoxwacR8irKxbcTAI18Hkzw,1014
 scitex/errors.py,sha256=Pxk8TKpGRk_QBFVB46H7k1Uxetja0OEdYjJjV_lrxRM,2874
 scitex/mcp_server.py,sha256=VNjs3N21x3_yAzfR8HhuFJJOvYOBHgvJo4tKDQdQsLE,6081
 scitex/units.py,sha256=lm2SH4PGXz-22tjUoBQhvKJDKmPD01ykSFWoCaFC384,10356
-scitex/_mcp_resources/__init__.py,sha256=IJlMdffFQIn7V7UDHYPxXfPchQilNCM1QEFq9tL5ZOg,1283
+scitex/_mcp_resources/__init__.py,sha256=RomYv2wi1PYC8Z3ymAv46q0HygVErrSlViigLTWEuLY,1368
 scitex/_mcp_resources/_cheatsheet.py,sha256=pdwzAB3IEr7UHkFv0D0-TJGeHF6ENtuq6NHeneLgKo8,3883
 scitex/_mcp_resources/_figrecipe.py,sha256=A8oK3FwDqSNYyYI4jwfNJ2yiH_8XVnfFjoGJtuvdDLU,3581
 scitex/_mcp_resources/_formats.py,sha256=EyNZKtmX6dg6vK1Gk0EmrSSKH5d9yc3RMqZtSP-Op0I,2923
 scitex/_mcp_resources/_modules.py,sha256=17LZpOPSmr9XwgGJg2vRgEK596S5FoSYb320vgm9x-k,8702
+scitex/_mcp_resources/_scholar.py,sha256=RSYt7j6bcbKtR-tOtvCtdE6J3IS8C925_c34t0Z1Es8,4689
 scitex/_mcp_resources/_session.py,sha256=lbe9W3cfPOyoq6bPOeN-jB8MwI4DnRWMpxHmpfn97SM,4590
 scitex/_mcp_tools/__init__.py,sha256=6krJPLr6ReVAkGoZR7vQHQrszr8AGW4dwWsY2EcmPkc,1229
 scitex/_mcp_tools/audio.py,sha256=LBX9YQZkNGAXfoIEFljnHRk39gTyJfdaVPCRrS6F8qE,6245
-scitex/_mcp_tools/canvas.py,sha256=FeRyJ0BKbqqsaWdsK34qABATeWzNe4Fc461VdUDEtKE,3868
+scitex/_mcp_tools/canvas.py,sha256=zgu5velDxyTltn87DRN1EuGdJ1UZlcDbiEXGi5rZF7Q,5155
 scitex/_mcp_tools/capture.py,sha256=k7pwuB1vdP-VCYjutajEZEsvVAKY-8_mEYrYGWXgOo8,5658
 scitex/_mcp_tools/diagram.py,sha256=pZNq0UTRlg7piq0YDD40qY5M2mqFYoRdFwmWeRCBieA,585
 scitex/_mcp_tools/introspect.py,sha256=GY9j9EUAs-CKegzfPHubPT3OGpOjcY5Rb09M3OHEIwA,6562
 scitex/_mcp_tools/plt.py,sha256=CuI6uOsyDGrLCWHWwnEKru-KCA532GVzt6rcRlxXHt8,9248
-scitex/_mcp_tools/scholar.py,sha256=oIo1QSyoF48pEHgaQ1PWt-N_KNf8rJCKdlmiG-8WVQ8,15243
+scitex/_mcp_tools/scholar.py,sha256=Tp8PlcHraLvHMrQWgFgq2jdjAIM4Vsps92mVgZu9NcY,13374
 scitex/_mcp_tools/social.py,sha256=wyyHCybx0tCUfIEGrGYhxj1thlH-dcIeq05TtUP9RFk,816
 scitex/_mcp_tools/stats.py,sha256=U2pGC0NTfzb0stKGafVNdgZhIYovYi6ti1EoG4f4dn4,6139
 scitex/_mcp_tools/template.py,sha256=NhfIaVYo7JvssZk_dUvzosvcc-qjnxFr69dV1DmAlgY,3102
@@ -240,9 +241,10 @@ scitex/browser/stealth/HumanBehavior.py,sha256=fTocrAO3-8rAgxW1aNZLFgErvHw2MUXao
 scitex/browser/stealth/StealthManager.py,sha256=mrtBAo-jo9nM7sSbzKC-s7VEci7SDK6GbidGNqmAPvs,37444
 scitex/browser/stealth/__init__.py,sha256=KVbyLjm8KnM5YwyB84A3pwLdUGkANNgwpA7YL2fyAxo,188
 scitex/canvas/README.md,sha256=jRwasTPNrmQsCyv67ul7qUIgv5xKIab1u2hi8tvlbAg,9142
-scitex/canvas/__init__.py,sha256=k_1mqbodRgy6phbhLDqRenEEnOLvueWwj0xNNYrCyd0,9380
+scitex/canvas/__init__.py,sha256=_K3ocsEwAJMyGRw0ruCD07vjFMjrH1QQNqXujHJbOEw,6295
+scitex/canvas/_legacy.py,sha256=g3pHBTuw9egpjt_CtE8I1YrWnkoauNNHsvDI0zR0xhQ,4060
 scitex/canvas/canvas.py,sha256=1aUjIqCzwKhGXukCQsHc-h-kqLNA9VqzIMazimqm2mA,12968
-scitex/canvas/mcp_server.py,sha256=Q-f8kzW-97wfrDmOo0LTYd8zXTBiiSOdJH3e4vjDDoo,4379
+scitex/canvas/mcp_server.py,sha256=fBTmtXOhO60wG-e6j-Y-WE_aWykAMsajWkidZRQ6lcU,4754
 scitex/canvas/_mcp/__init__.py,sha256=FJRAr90vUCg4PJ8Sv-WzsKuM7aY93m6UR87fhk843MU,73
 scitex/canvas/_mcp/handlers.py,sha256=oVZcYfEyDBl6lEKJ7vTWnrueBO-CWOiAbGNrKVFQOww,8528
 scitex/canvas/_mcp/tool_schemas.py,sha256=Tl6CIpuW_J0QppShjZPo0DJ8wiNgLk6oHBoR74ASC7Y,8046
@@ -364,7 +366,7 @@ scitex/capture/capture.py,sha256=vDVaY2mTNxTsWbg8he78jh0NPhVULLzanREkE9EtQHE,287
 scitex/capture/cli.py,sha256=bNal0BXlAM34q9OLv1ydV9lHq95pckY0XaaxsiQTkts,7201
 scitex/capture/gif.py,sha256=Rbx-9u6zGAjImhFWp5yLm3MXCW1oaUq8OusWdPnzJAY,11278
 scitex/capture/grid.py,sha256=LQKNyP5I1UN50rCnxi0tCf7vurLLp3mwRzCoYDa10ZQ,14189
-scitex/capture/mcp_server.py,sha256=my57OABAsS2A5sOcCUn1PkNS8SR0MFeqP3SEHPvOzFg,37664
+scitex/capture/mcp_server.py,sha256=jIRAHW48jEvhhk2NYVZifkI42s-XzkGmt7UKwmJ0xDw,38059
 scitex/capture/session.py,sha256=N-8mY6A6QmJHRCJYW4dQhrK7iVmJhYBRDt8vYyeBNYE,1972
 scitex/capture/utils.py,sha256=WyMr8aGmWqOneT4BFTvWNY-PrMPxmKLHtUEgSk59URY,21881
 scitex/capture/_mcp/__init__.py,sha256=MhQoN-oXeeZ-P34rJDluwSi45hf3sC4pVi8MfTW6LBc,286
@@ -397,11 +399,12 @@ scitex/cli/template.py,sha256=omoT2qzWtyqJYqrIqJ74uyDgoQTL667ONSbwSQU4sb8,12015
 scitex/cli/tex.py,sha256=d_Fh9PXObuyjMgQ_Ap60aXwAztJbY3Pd2SvfV92toBg,9222
 scitex/cli/web.py,sha256=_XwnlsOm2MD1eyJVycfsdki4IcDnglXTO5IkZ-eb3xA,13482
 scitex/cli/writer.py,sha256=lApUnUQrclbufEMwD4m4MKMDg3ZkCBe0kTS9WuH4hsM,1953
-scitex/cli/scholar/__init__.py,sha256=RXiRs1gwafsLmVpXkvMsM7tSy2rsuvyu-QlO7y98PzY,7055
-scitex/cli/scholar/_crossref_scitex.py,sha256=gjJV7lS4H-u7F1dGZpEVsVrKC2cOHC4RcBXEKQEAhOg,9622
+scitex/cli/scholar/__init__.py,sha256=BQyPjd1jAgcHbjGPZx_amrlGOPM3UaKAdi9JyflQ9k8,8326
+scitex/cli/scholar/_crossref_scitex.py,sha256=-ujYGB-KNtMCMoOBNsOl_qTEp6k6l75JeUqmUwjjG5o,1636
 scitex/cli/scholar/_fetch.py,sha256=tdRXlsTjhfdOddJwWpOZ5scGGXzhesxrXX9Ri9jm7AQ,11226
 scitex/cli/scholar/_jobs.py,sha256=hx1aoxdHaR800XC7acWE4x_pxJ7cYq6re7Zf8MxLr7E,9058
 scitex/cli/scholar/_library.py,sha256=GP3JAtfg3zwGD810BygJLN4B0-m-RqRfyt7_JHtOeT8,4468
+scitex/cli/scholar/_openalex_scitex.py,sha256=-KjFYxnehgJtf4Xz35U_SJqC2zXvvkmdV0ZXThxGpQI,1559
 scitex/cli/scholar/_utils.py,sha256=SC-_wB0UFV89p-4PVdVeREbTOp6oV2ke4QRiiRzShig,770
 scitex/cloud/__init__.py,sha256=xyzKrQGDpoCMNTLNQmCZjvVQxuPlcj306Kjn3psZCNk,5064
 scitex/cloud/_matplotlib_hook.py,sha256=B5IEctAF1Rb7jvkZa5Xl8T1FuBcGiRjFxEtW_mmRz2I,3731
@@ -1278,17 +1281,19 @@ scitex/schema/_theme.py,sha256=1AWmJy7vim2lmIJlbjv4BCLxKmNeqw0WGEGr2z_U9Kw,10192
 scitex/schema/_validation.py,sha256=8u4dVVfAhCzdRtcpqFxChumRMyHJQfBQgnyf1TpsQ_s,13747
 scitex/scholar/.gitignore,sha256=oYROO1p7Mia9ftRowaRu3BVNm7jdMY9O4Ro1RSgSC80,381
 scitex/scholar/README.md,sha256=AbE7t0qIKQY11ZSGkeQXNP_qA088q-2t-oQ3W5bDvxI,3799
-scitex/scholar/__init__.py,sha256=DZm8kU5nETTv63M0IR2RHitPucO_3qTMSVrH48yqRGw,10120
+scitex/scholar/__init__.py,sha256=F7a-OTd8kqZK2vRQVhAGMTqkOGynMc7FRND_SROFTg8,10392
 scitex/scholar/__main__.py,sha256=U7QKol30Vsvw_Xg4tVS5F1iFU4UluKnm1Z0Bs18zgCs,9711
-scitex/scholar/crossref_scitex.py,sha256=cM22iDel6N5QkTkUfx8sSyedHffqsYCYRGf4iePN2sw,8928
-scitex/scholar/mcp_server.py,sha256=m-v1sjU0sJeaL0rHrihQz6alost__Koc7wyEAqP7bIY,12553
+scitex/scholar/mcp_server.py,sha256=z_b4pD2z1H2bG1B6ATt3B6e8uNBMl-MLz6a3KLnaCiw,14934
 scitex/scholar/_mcp/__init__.py,sha256=FJRAr90vUCg4PJ8Sv-WzsKuM7aY93m6UR87fhk843MU,73
 scitex/scholar/_mcp/all_handlers.py,sha256=yALfZdQhDXWPlqUB1rcncENXyVVFNDnpGqhz5iCc-5Q,1856
 scitex/scholar/_mcp/crossref_handlers.py,sha256=fBN9pVzQLiGT4FWoLGAOdsm-_-gwhMo1EEl0S9MlA0c,7770
+scitex/scholar/_mcp/crossref_tool_schemas.py,sha256=v1VI3I2r_LWqt4IuEJo_JvXxtdY04eZ3zk6Kvqumou4,4748
 scitex/scholar/_mcp/handlers.py,sha256=gMFBHPdqfWGRUDSu3wlllVBnJSzrkGm9ZUnUBhZXCY0,51088
 scitex/scholar/_mcp/job_handlers.py,sha256=8ZkFRG1TOq20168DIpic3VMAMzTzieg1jnaE7eXQLlU,4970
 scitex/scholar/_mcp/job_tool_schemas.py,sha256=xDTysuf3aLNxLO1O57sal5XcMeEstk0SB77wK9q6yVs,5777
-scitex/scholar/_mcp/tool_schemas.py,sha256=AuedyrT9BOERnG_6zpLx1oVzfRs2JWaYE1RbBtDkW6g,19580
+scitex/scholar/_mcp/openalex_handlers.py,sha256=r9X1mwMqqwovrbx4pcgHQeISCbGqqW87neP6EW09Pnw,6503
+scitex/scholar/_mcp/openalex_tool_schemas.py,sha256=zu7--BZ7_aEnaJuEg-Sb1FiKNoeRthat70S9TZ70uL4,3194
+scitex/scholar/_mcp/tool_schemas.py,sha256=ng_lGqhwa_2BxByASZriDgnZSHTewvqpF6jOzqRxEZ0,19818
 scitex/scholar/auth/README.md,sha256=YYLVVHAgHFjoYXjWJ2SV_3toOJPSnWOs6-EMKbPIu9U,3373
 scitex/scholar/auth/ScholarAuthManager.py,sha256=u1t9FrTbBQyGvNmuuMprSpCLLxG0Fap-oCrm0x0iDSE,10570
 scitex/scholar/auth/__init__.py,sha256=kM_iLBm00U1sVBr1TuAT7dY46kZqcOCUztMykxBlxhQ,470
@@ -1490,6 +1495,9 @@ scitex/scholar/jobs/_JobManager.py,sha256=F06vxOZoYouqgeNVmlwKpDPkWWh-PU2aLp3pqu
 scitex/scholar/jobs/__init__.py,sha256=dXdPmFUWf-Ypl41_Z6qsduYCofygfgq2UjiIZcYiGjQ,1779
 scitex/scholar/jobs/_errors.py,sha256=V7Xv4q0CDBJIQ6NSg-lRb_skFcqT-jIZ_aI5gavjDds,10211
 scitex/scholar/jobs/_executors.py,sha256=kWU9uuN_8cx6oPyGakjcypsiZoUwicrHL29_aF_iZUU,11807
+scitex/scholar/local_dbs/__init__.py,sha256=sxCiEcOy5pC6VBpEExHgkAlu1st7EUcfw6PRFo67buQ,857
+scitex/scholar/local_dbs/crossref_scitex.py,sha256=Ib2JluhqyYjDPh0hZqENHNP7_eg21AQnkyWjl5pfXRs,748
+scitex/scholar/local_dbs/openalex_scitex.py,sha256=mnHHMnk2aJcSfXYWJh2wsbs818oU1fW63i_3VZG7wpI,748
 scitex/scholar/metadata_engines/README.md,sha256=wz1fTeru9sTgkGO5T8VdDBsd4FBaZu2t6-I8MTNGifw,919
 scitex/scholar/metadata_engines/ScholarEngine.py,sha256=WGOEvCiBiMm0aZNtN1AlBDCcN6XQUl76R6zedUhR7gs,20604
 scitex/scholar/metadata_engines/__init__.py,sha256=qjndZBrK2tXOMCRHFeEu2BJ9Ir8nbr7cHsV4xvXUwv4,749
@@ -2408,7 +2416,7 @@ scitex/stats/__init__.py,sha256=ZD8j9RTrlwg_JNV3vcTzaovHM0eWKtsfJa5Uno4iWpE,1003
 scitex/stats/__main__.py,sha256=Jnupr0q90w0ZKbnHSsqXmFWukMGuXzG4bPXInj8Gqmo,7815
 scitex/stats/_figrecipe_integration.py,sha256=_nOD1rcITE3HGEc3-5Bu0Q2VRy3Tizil7H35GJyeOng,3076
 scitex/stats/_schema.py,sha256=d12piS129kDRnHAD3XJ96d3G8ZLeYm1tK4CAlBfdtbg,1105
-scitex/stats/mcp_server.py,sha256=j3Bkf0GeLUBS8Ao2k_-GaiWuostObflkddDXJKwzKps,15136
+scitex/stats/mcp_server.py,sha256=_tjHu7Gubq8519Q_mfKzGGyPUINjoDpAmlszLVlKHZk,15511
 scitex/stats/run_all.sh,sha256=Q_fw3q_10mlQAUBRggSNrl0gILFvTFUlFztH2Aicfhs,1381
 scitex/stats/_mcp/__init__.py,sha256=FJRAr90vUCg4PJ8Sv-WzsKuM7aY93m6UR87fhk843MU,73
 scitex/stats/_mcp/handlers.py,sha256=zvSep5DdTMMRmFFhSDBy-PGeoGhq7e4QAW_7V2v3_dQ,874
@@ -2500,7 +2508,7 @@ scitex/template/clone_pip_project.py,sha256=cEQkbyD8x-0iVDrL3iCIH2z5e_7mKIXe-uPQ
 scitex/template/clone_research.py,sha256=cWwW6vQp03u19mDlit-P6yMHF30IW6DQf3xXVdd-D1M,3073
 scitex/template/clone_singularity.py,sha256=CYMjaUU1Bf58tKtU5tlTKgjd1EphaZvmMpqmhIyPtyw,3103
 scitex/template/clone_writer_directory.py,sha256=ibAlEkMRLTBYmxgg_LFMtFr3uLTMFhTyYyhoDkwv6xE,3058
-scitex/template/mcp_server.py,sha256=yQBDQpIwcIBzdgHPRXVSVBHrHb3DWd0b5V4DmN6WvY4,5718
+scitex/template/mcp_server.py,sha256=aqCOdzFOeEBjA4RPlXrPXY9O9nix0fOItENQNwdYv5Y,6096
 scitex/template/_mcp/__init__.py,sha256=FJRAr90vUCg4PJ8Sv-WzsKuM7aY93m6UR87fhk843MU,73
 scitex/template/_mcp/handlers.py,sha256=VqOt8Rjb2d6z0Fhlfui2KgX-coQS-eUZkBZ7z6caOjY,9073
 scitex/template/_mcp/tool_schemas.py,sha256=dAuqmTrdOA8DJOtzRvhvvlLNBLLivOJW-UXiTldzt7Y,6580
@@ -2533,7 +2541,7 @@ scitex/types/__init__.py,sha256=VdI0QzASeZMy_mUCtSfNO8Ngn9PYQ-oGeweo9NfRmrg,301
 scitex/types/_is_listed_X.py,sha256=4lSFyuqKaZytqDGuyGqUJOqkrFo0Ymql3kfWwIva5L0,1867
 scitex/ui/__init__.py,sha256=YTPRgC-eLHgB1Saxml_S5CIRFR0mVTld5f1ZIe8EemI,4882
 scitex/ui/_backends.py,sha256=qChJsy_2WUGfXbPd_-CyYf2kOusr4qsEFCT-rduyJ30,741
-scitex/ui/mcp_server.py,sha256=d0dp3vKeF0-Xp3_DGF37ZrgIVjDhu8f9It-e4xclKeI,4795
+scitex/ui/mcp_server.py,sha256=HxTJIhsOLGM7ccuH4MvC94ueoZTVdVOv7Jw-HhRiNAs,5166
 scitex/ui/_backends/__init__.py,sha256=n3oNFT7NtXrPPORJ0bYk89d-SkZdBH4-1eMR0vZ-buI,1756
 scitex/ui/_backends/_audio.py,sha256=3Qq2amkGgmkqqTcEWX82aL3iLrOcY1n8zUYgRH7mzK8,2418
 scitex/ui/_backends/_config.py,sha256=Qqzw8U7Ej2kkI4wmVjmixNc7KuIym5klalGiv4TxJUs,8427
@@ -2612,8 +2620,8 @@ scitex/writer/utils/_parse_latex_logs.py,sha256=K05kCJClG86-RovXG9I5e3wHP0mEGiZl
 scitex/writer/utils/_parse_script_args.py,sha256=Fkx1ze_jlKYIpviLuT7z0hpqE4cdtXXA_7sK3sKpVs4,4593
 scitex/writer/utils/_verify_tree_structure.py,sha256=Uk9NUSleR9aMHpAgUGsPZMk4a75l35EkZhQYKIfolVY,5724
 scitex/writer/utils/_watch.py,sha256=nYzPQ-iPAOzbwzAPBtSrrVBLLPMl08e0qxw0mtv0Y8I,2577
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-scitex-2.15.3.dist-info/entry_points.txt,sha256=ZtDrHnPNMnsSmAnQoCHNmk0xKotNyR2X_YFDDteupW8,497
-scitex-2.15.3.dist-info/licenses/LICENSE,sha256=TfPDBt3ar0uv_f9cqCDMZ5rIzW3CY8anRRd4PkL6ejs,34522
-scitex-2.15.3.dist-info/RECORD,,
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scitex/scholar/crossref_scitex.py

@@ -1,367 +0,0 @@
-#!/usr/bin/env python3
-# Timestamp: 2026-01-24
-# File: src/scitex/scholar/crossref_scitex.py
-"""CrossRef-SciTeX: Local CrossRef database integration for scitex.scholar.
-
-This module provides access to the local CrossRef database (167M+ papers)
-through the crossref-local package. Branded as "crossref-scitex" to distinguish
-from the official CrossRef API. Supports both direct database access and HTTP
-API mode for remote servers.
-
-Quick Start
------------
-
-Search for papers:
-    >>> from scitex.scholar import crossref_scitex
-    >>> results = crossref_scitex.search("hippocampal sharp wave ripples")
-    >>> print(results.total, "papers found")
-
-Get paper by DOI:
-    >>> work = crossref_scitex.get("10.1126/science.aax0758")
-    >>> print(work.title)
-
-Configuration
--------------
-
-The mode is automatically detected:
-- If CROSSREF_LOCAL_DB is set, uses direct database access
-- If CROSSREF_LOCAL_API_URL is set, uses HTTP API
-- Default: tries localhost:31291 (SciTeX port scheme)
-
-Environment variables (SCITEX_SCHOLAR_CROSSREF_* takes priority):
-    SCITEX_SCHOLAR_CROSSREF_DB: Path to local database
-    SCITEX_SCHOLAR_CROSSREF_MODE: 'db' or 'http'
-    CROSSREF_LOCAL_DB: Path to local database (fallback)
-    CROSSREF_LOCAL_API_URL: HTTP API URL (fallback)
-
-SSH tunnel for remote database:
-    $ ssh -L 31291:127.0.0.1:31291 your-server
-"""
-
-from __future__ import annotations
-
-from typing import TYPE_CHECKING, Any, Optional
-
-# Set environment variables for crossref-local configuration
-# SCITEX_SCHOLAR_CROSSREF_* vars take priority in crossref-local's config.py
-
-if TYPE_CHECKING:
-    from crossref_local import SearchResult, Work
-    from crossref_local.citations import CitationNetwork
-
-__all__ = [
-    # Core search/retrieval
-    "search",
-    "count",
-    "get",
-    "get_many",
-    "exists",
-    # Enrichment
-    "enrich",
-    "enrich_dois",
-    # Configuration
-    "configure",
-    "configure_http",
-    "get_mode",
-    "info",
-    "is_available",
-    # Citation functions
-    "get_citing",
-    "get_cited",
-    "get_citation_count",
-    # Classes (re-exported)
-    "Work",
-    "SearchResult",
-    "CitationNetwork",
-    # Async API
-    "aio",
-    # Cache module
-    "cache",
-]
-
-
-def _ensure_crossref_local():
-    """Ensure crossref-local is available."""
-    try:
-        import crossref_local
-
-        return crossref_local
-    except ImportError as e:
-        raise ImportError(
-            "crossref-local not installed. Install with: pip install crossref-local"
-        ) from e
-
-
-def is_available() -> bool:
-    """Check if crossref-local is available and configured.
-
-    Returns
-    -------
-        True if crossref-local can be used (either DB or HTTP mode)
-    """
-    try:
-        crl = _ensure_crossref_local()
-        info_result = crl.info()
-        return info_result.get("status") == "ok"
-    except Exception:
-        return False
-
-
-# =============================================================================
-# Core Search/Retrieval Functions (delegated to crossref-local)
-# =============================================================================
-
-
-def search(
-    query: str,
-    limit: int = 20,
-    offset: int = 0,
-    **kwargs: Any,
-) -> SearchResult:
-    """Search for papers in the CrossRef database.
-
-    Args:
-        query: Search query string (full-text search)
-        limit: Maximum number of results (default: 20)
-        offset: Number of results to skip for pagination
-        **kwargs: Additional arguments passed to crossref-local
-
-    Returns
-    -------
-        SearchResult containing matching papers
-
-    Examples
-    --------
-        >>> from scitex.scholar import crossref
-        >>> results = crossref.search("deep learning")
-        >>> for work in results:
-        ...     print(work.title)
-    """
-    crl = _ensure_crossref_local()
-    return crl.search(query, limit=limit, offset=offset, **kwargs)
-
-
-def count(query: str) -> int:
-    """Count papers matching a search query.
-
-    Args:
-        query: Search query string
-
-    Returns
-    -------
-        Number of matching papers
-    """
-    crl = _ensure_crossref_local()
-    return crl.count(query)
-
-
-def get(doi: str) -> Optional[Work]:
-    """Get a paper by DOI.
-
-    Args:
-        doi: DOI of the paper (e.g., "10.1126/science.aax0758")
-
-    Returns
-    -------
-        Work object if found, None otherwise
-
-    Examples
-    --------
-        >>> work = crossref.get("10.1038/nature12373")
-        >>> if work:
-        ...     print(work.title, work.year)
-    """
-    crl = _ensure_crossref_local()
-    return crl.get(doi)
-
-
-def get_many(dois: list[str]) -> list[Work]:
-    """Get multiple papers by DOI.
-
-    Args:
-        dois: List of DOIs
-
-    Returns
-    -------
-        List of Work objects (None for DOIs not found)
-    """
-    crl = _ensure_crossref_local()
-    return crl.get_many(dois)
-
-
-def exists(doi: str) -> bool:
-    """Check if a DOI exists in the database.
-
-    Args:
-        doi: DOI to check
-
-    Returns
-    -------
-        True if DOI exists
-    """
-    crl = _ensure_crossref_local()
-    return crl.exists(doi)
-
-
-# =============================================================================
-# Enrichment Functions
-# =============================================================================
-
-
-def enrich(results: SearchResult) -> SearchResult:
-    """Enrich search results with citation data.
-
-    Args:
-        results: SearchResult to enrich
-
-    Returns
-    -------
-        Enriched SearchResult with citation counts and references
-    """
-    crl = _ensure_crossref_local()
-    return crl.enrich(results)
-
-
-def enrich_dois(dois: list[str]) -> list[Work]:
-    """Get and enrich papers by DOI with citation data.
-
-    Args:
-        dois: List of DOIs to enrich
-
-    Returns
-    -------
-        List of enriched Work objects
-    """
-    crl = _ensure_crossref_local()
-    return crl.enrich_dois(dois)
-
-
-# =============================================================================
-# Citation Functions
-# =============================================================================
-
-
-def get_citing(doi: str) -> list[str]:
-    """Get DOIs of papers that cite this paper.
-
-    Args:
-        doi: DOI of the paper
-
-    Returns
-    -------
-        List of DOIs that cite this paper
-    """
-    crl = _ensure_crossref_local()
-    return crl.get_citing(doi)
-
-
-def get_cited(doi: str) -> list[str]:
-    """Get DOIs of papers cited by this paper.
-
-    Args:
-        doi: DOI of the paper
-
-    Returns
-    -------
-        List of DOIs cited by this paper (references)
-    """
-    crl = _ensure_crossref_local()
-    return crl.get_cited(doi)
-
-
-def get_citation_count(doi: str) -> int:
-    """Get the citation count for a paper.
-
-    Args:
-        doi: DOI of the paper
-
-    Returns
-    -------
-        Number of citations
-    """
-    crl = _ensure_crossref_local()
-    return crl.get_citation_count(doi)
-
-
-# =============================================================================
-# Configuration Functions
-# =============================================================================
-
-
-def configure(db_path: str) -> None:
-    """Configure direct database access mode.
-
-    Args:
-        db_path: Path to the crossref.db file
-    """
-    crl = _ensure_crossref_local()
-    crl.configure(db_path)
-
-
-def configure_http(api_url: Optional[str] = None) -> None:
-    """Configure HTTP API mode.
-
-    Args:
-        api_url: API URL (default: http://localhost:31291)
-
-    Example:
-        >>> # After setting up SSH tunnel: ssh -L 31291:127.0.0.1:31291 server
-        >>> crossref.configure_http()
-    """
-    crl = _ensure_crossref_local()
-    crl.configure_http(api_url)
-
-
-def get_mode() -> str:
-    """Get the current operating mode.
-
-    Returns
-    -------
-        "db" for direct database access, "http" for API mode
-    """
-    crl = _ensure_crossref_local()
-    return crl.get_mode()
-
-
-def info() -> dict:
-    """Get information about the crossref-local configuration.
-
-    Returns
-    -------
-        Dict with status, mode, version, database stats, etc.
-    """
-    crl = _ensure_crossref_local()
-    return crl.info()
-
-
-# =============================================================================
-# Re-exported Classes and Modules
-# =============================================================================
-
-
-def __getattr__(name: str):
-    """Lazy import for classes and modules."""
-    if name == "Work":
-        from crossref_local import Work
-
-        return Work
-    elif name == "SearchResult":
-        from crossref_local import SearchResult
-
-        return SearchResult
-    elif name == "CitationNetwork":
-        from crossref_local.citations import CitationNetwork
-
-        return CitationNetwork
-    elif name == "aio":
-        from crossref_local import aio
-
-        return aio
-    elif name == "cache":
-        from crossref_local import cache
-
-        return cache
-    raise AttributeError(f"module {__name__!r} has no attribute {name!r}")
-
-
-# EOF