scitex 2.15.2__py3-none-any.whl → 2.15.4__py3-none-any.whl

scitex/dev/plt/data/mpl/dir_ax.txt

@@ -0,0 +1,459 @@
+ArtistList
+_AxesBase__clear
+_PROPERTIES_EXCLUDED_FROM_SET
+__annotations__
+__class__
+__delattr__
+__dict__
+__dir__
+__doc__
+__eq__
+__format__
+__ge__
+__getattribute__
+__getstate__
+__gt__
+__hash__
+__init__
+__init_subclass__
+__le__
+__lt__
+__module__
+__ne__
+__new__
+__reduce__
+__reduce_ex__
+__repr__
+__setattr__
+__setstate__
+__sizeof__
+__str__
+__subclasshook__
+__weakref__
+_add_text
+_adjustable
+_agg_filter
+_alias_map
+_alpha
+_anchor
+_animated
+_aspect
+_autotitlepos
+_axes
+_axes_locator
+_axis_map
+_axis_names
+_axisbelow
+_box_aspect
+_callbacks
+_check_no_units
+_children
+_clipon
+_clippath
+_cm_set
+_colorbars
+_convert_dx
+_current_image
+_different_canvas
+_errorevery_to_mask
+_facecolor
+_fill_between_process_units
+_fill_between_x_or_y
+_forward_navigation_events
+_frameon
+_fully_clipped_to_axes
+_gci
+_gen_axes_patch
+_gen_axes_spines
+_get_aspect_ratio
+_get_lines
+_get_pan_points
+_get_patches_for_fill
+_get_view
+_gid
+_gridOn
+_in_layout
+_init_axis
+_internal_update
+_label
+_label_outer_xaxis
+_label_outer_yaxis
+_left_title
+_make_twin_axes
+_mouseover
+_mouseover_set
+_navigate
+_navigate_mode
+_originalPosition
+_parent_figure
+_parse_bar_color_args
+_parse_scatter_color_args
+_path_effects
+_pcolorargs
+_picker
+_position
+_prepare_view_from_bbox
+_process_unit_info
+_projection_init
+_quiver_units
+_rasterization_zorder
+_rasterized
+_remove_legend
+_remove_method
+_request_autoscale_view
+_right_title
+_sci
+_set_alpha_for_array
+_set_artist_props
+_set_gc_clip
+_set_lim_and_transforms
+_set_position
+_set_title_offset_trans
+_set_view
+_set_view_from_bbox
+_shared_axes
+_sharex
+_sharey
+_sketch
+_snap
+_stale
+_stale_viewlims
+_sticky_edges
+_subclass_uses_cla
+_subplotspec
+_tight
+_transform
+_transformSet
+_twinned_axes
+_unit_change_handler
+_unstale_viewLim
+_update_image_limits
+_update_line_limits
+_update_patch_limits
+_update_props
+_update_set_signature_and_docstring
+_update_title_position
+_update_transScale
+_url
+_use_sticky_edges
+_validate_converted_limits
+_viewLim
+_visible
+_xaxis_transform
+_xmargin
+_yaxis_transform
+_ymargin
+acorr
+add_artist
+add_callback
+add_child_axes
+add_collection
+add_container
+add_image
+add_line
+add_patch
+add_table
+angle_spectrum
+annotate
+apply_aspect
+arrow
+artists
+autoscale
+autoscale_view
+axes
+axhline
+axhspan
+axis
+axison
+axline
+axvline
+axvspan
+bar
+bar_label
+barbs
+barh
+bbox
+boxplot
+broken_barh
+bxp
+callbacks
+can_pan
+can_zoom
+child_axes
+cla
+clabel
+clear
+clipbox
+cohere
+collections
+containers
+contains
+contains_point
+contour
+contourf
+convert_xunits
+convert_yunits
+csd
+dataLim
+drag_pan
+draw
+draw_artist
+ecdf
+end_pan
+errorbar
+eventplot
+figure
+fill
+fill_between
+fill_betweenx
+findobj
+fmt_xdata
+fmt_ydata
+format_coord
+format_cursor_data
+format_xdata
+format_ydata
+get_adjustable
+get_agg_filter
+get_alpha
+get_anchor
+get_animated
+get_aspect
+get_autoscale_on
+get_autoscalex_on
+get_autoscaley_on
+get_axes_locator
+get_axisbelow
+get_box_aspect
+get_children
+get_clip_box
+get_clip_on
+get_clip_path
+get_cursor_data
+get_data_ratio
+get_default_bbox_extra_artists
+get_facecolor
+get_fc
+get_figure
+get_forward_navigation_events
+get_frame_on
+get_gid
+get_gridspec
+get_images
+get_in_layout
+get_label
+get_legend
+get_legend_handles_labels
+get_lines
+get_mouseover
+get_navigate
+get_navigate_mode
+get_path_effects
+get_picker
+get_position
+get_rasterization_zorder
+get_rasterized
+get_shared_x_axes
+get_shared_y_axes
+get_sketch_params
+get_snap
+get_subplotspec
+get_tightbbox
+get_title
+get_transform
+get_transformed_clip_path_and_affine
+get_url
+get_visible
+get_window_extent
+get_xaxis
+get_xaxis_text1_transform
+get_xaxis_text2_transform
+get_xaxis_transform
+get_xbound
+get_xgridlines
+get_xlabel
+get_xlim
+get_xmajorticklabels
+get_xmargin
+get_xminorticklabels
+get_xscale
+get_xticklabels
+get_xticklines
+get_xticks
+get_yaxis
+get_yaxis_text1_transform
+get_yaxis_text2_transform
+get_yaxis_transform
+get_ybound
+get_ygridlines
+get_ylabel
+get_ylim
+get_ymajorticklabels
+get_ymargin
+get_yminorticklabels
+get_yscale
+get_yticklabels
+get_yticklines
+get_yticks
+get_zorder
+grid
+has_data
+have_units
+hexbin
+hist
+hist2d
+hlines
+ignore_existing_data_limits
+images
+imshow
+in_axes
+indicate_inset
+indicate_inset_zoom
+inset_axes
+invert_xaxis
+invert_yaxis
+is_transform_set
+label_outer
+legend
+legend_
+lines
+locator_params
+loglog
+magnitude_spectrum
+margins
+matshow
+minorticks_off
+minorticks_on
+mouseover
+name
+patch
+patches
+pchanged
+pcolor
+pcolorfast
+pcolormesh
+phase_spectrum
+pick
+pickable
+pie
+plot
+plot_date
+properties
+psd
+quiver
+quiverkey
+redraw_in_frame
+relim
+remove
+remove_callback
+reset_position
+scatter
+secondary_xaxis
+secondary_yaxis
+semilogx
+semilogy
+set
+set_adjustable
+set_agg_filter
+set_alpha
+set_anchor
+set_animated
+set_aspect
+set_autoscale_on
+set_autoscalex_on
+set_autoscaley_on
+set_axes_locator
+set_axis_off
+set_axis_on
+set_axisbelow
+set_box_aspect
+set_clip_box
+set_clip_on
+set_clip_path
+set_facecolor
+set_fc
+set_figure
+set_forward_navigation_events
+set_frame_on
+set_gid
+set_in_layout
+set_label
+set_mouseover
+set_navigate
+set_navigate_mode
+set_path_effects
+set_picker
+set_position
+set_prop_cycle
+set_rasterization_zorder
+set_rasterized
+set_sketch_params
+set_snap
+set_subplotspec
+set_title
+set_transform
+set_url
+set_visible
+set_xbound
+set_xlabel
+set_xlim
+set_xmargin
+set_xscale
+set_xticklabels
+set_xticks
+set_ybound
+set_ylabel
+set_ylim
+set_ymargin
+set_yscale
+set_yticklabels
+set_yticks
+set_zorder
+sharex
+sharey
+specgram
+spines
+spy
+stackplot
+stairs
+stale
+stale_callback
+start_pan
+stem
+step
+sticky_edges
+streamplot
+table
+tables
+text
+texts
+tick_params
+ticklabel_format
+title
+titleOffsetTrans
+transAxes
+transData
+transLimits
+transScale
+tricontour
+tricontourf
+tripcolor
+triplot
+twinx
+twiny
+update
+update_datalim
+update_from
+use_sticky_edges
+viewLim
+violin
+violinplot
+vlines
+xaxis
+xaxis_date
+xaxis_inverted
+xcorr
+yaxis
+yaxis_date
+yaxis_inverted
+zorder

scitex/introspect/_list_api.py

@@ -4,6 +4,7 @@
 
 """Module API listing utilities."""
 
+import importlib
 import inspect
 import sys
 import warnings
@@ -108,10 +109,12 @@ def _list_api_impl(
         warnings.filterwarnings("ignore", category=UserWarning)
 
     if isinstance(module, str):
+        # Normalize hyphens to underscores for Python module names
+        module_name = module.replace("-", "_")
         try:
-            module = __import__(module)
+            module = importlib.import_module(module_name)
         except ImportError as err:
-            print(f"Error importing module {module}: {err}")
+            print(f"Error importing module {module_name}: {err}")
             return pd.DataFrame(columns=columns)
 
     if visited is None:

scitex/plt/docs/EXTERNAL_PACKAGE_BRANDING.md

@@ -115,7 +115,7 @@ from figrecipe import *
 
 ## Port Scheme
 
-SciTeX uses port scheme 3129X (sa-i-te-ku-su → 3-1-2-9 in Japanese):
+SciTeX uses port scheme 3129X (TEX → te-ku-su → 2-9-3 in Japanese):
 
 | Port  | Service          |
 |-------|------------------|
@@ -130,7 +130,7 @@ External packages should use `{ENV_PREFIX}_{SETTING}`:
 
 ```
 SCITEX_PLT_MODE=local
-CROSSREF_LOCAL_API_URL=http://localhost:31291
+CROSSREF_LOCAL_API_URL=http://localhost:8333
 SCITEX_AUDIO_RELAY_URL=http://localhost:31293
 ```
 

scitex/scholar/__init__.py

@@ -1,5 +1,4 @@
-"""
-SciTeX Scholar - Scientific Literature Management Made Simple
+"""SciTeX Scholar - Scientific Literature Management Made Simple.
 
 This module provides a unified interface for:
 - Searching scientific literature across multiple sources
@@ -27,17 +26,17 @@ _missing = warn_module_deps("scholar")
 try:
     from scitex.scholar.auth import ScholarAuthManager
 except ImportError:
-    ScholarAuthManager = None
+    ScholarAuthManager = None  # type: ignore[misc,assignment]
 
 try:
     from scitex.scholar.browser import ScholarBrowserManager
 except ImportError:
-    ScholarBrowserManager = None
+    ScholarBrowserManager = None  # type: ignore[misc,assignment]
 
 try:
     from scitex.scholar.config import ScholarConfig
 except ImportError:
-    ScholarConfig = None
+    ScholarConfig = None  # type: ignore[misc,assignment]
 
 try:
     from scitex.scholar.core import Paper, Papers, Scholar
@@ -71,12 +70,17 @@ try:
 except ImportError:
     utils = None
 
-# CrossRef integration via crossref-local delegation (branded as crossref-scitex)
+# Local database integrations (crossref-local, openalex-local)
 try:
-    from . import crossref_scitex
+    from .local_dbs import crossref_scitex
 except ImportError:
     crossref_scitex = None
 
+try:
+    from .local_dbs import openalex_scitex
+except ImportError:
+    openalex_scitex = None
+
 __all__ = [
     "ScholarConfig",
     "ScholarEngine",
@@ -87,8 +91,9 @@ __all__ = [
     "Papers",
     "Scholar",
     "utils",
-    # CrossRef integration (167M+ papers via crossref-local)
-    "crossref_scitex",
+    # Local database integrations
+    "crossref_scitex",  # CrossRef (167M+ papers via crossref-local)
+    "openalex_scitex",  # OpenAlex (284M+ works via openalex-local)
 ]
 
 # # Import core classes for advanced users

scitex/scholar/_mcp/crossref_tool_schemas.py

@@ -0,0 +1,133 @@
+#!/usr/bin/env python3
+# Timestamp: 2026-01-29
+# File: src/scitex/scholar/_mcp/crossref_tool_schemas.py
+"""CrossRef-Local tool schemas for MCP server.
+
+Provides access to 167M+ papers via crossref-local database.
+"""
+
+from __future__ import annotations
+
+import mcp.types as types
+
+__all__ = ["get_crossref_tool_schemas"]
+
+
+def get_crossref_tool_schemas() -> list[types.Tool]:
+    """Return CrossRef-Local tool schemas."""
+    return [
+        types.Tool(
+            name="crossref_search",
+            description=(
+                "Search CrossRef database (167M+ papers) via crossref-local. "
+                "Fast full-text search with year filtering and citation enrichment."
+            ),
+            inputSchema={
+                "type": "object",
+                "properties": {
+                    "query": {
+                        "type": "string",
+                        "description": "Search query string (full-text search)",
+                    },
+                    "limit": {
+                        "type": "integer",
+                        "description": "Maximum number of results",
+                        "default": 20,
+                    },
+                    "offset": {
+                        "type": "integer",
+                        "description": "Number of results to skip for pagination",
+                        "default": 0,
+                    },
+                    "year_min": {
+                        "type": "integer",
+                        "description": "Minimum publication year filter",
+                    },
+                    "year_max": {
+                        "type": "integer",
+                        "description": "Maximum publication year filter",
+                    },
+                    "enrich": {
+                        "type": "boolean",
+                        "description": "Add citation counts and references",
+                        "default": False,
+                    },
+                },
+                "required": ["query"],
+            },
+        ),
+        types.Tool(
+            name="crossref_get",
+            description="Get a paper by DOI from CrossRef database with optional citation data.",
+            inputSchema={
+                "type": "object",
+                "properties": {
+                    "doi": {
+                        "type": "string",
+                        "description": "DOI of the paper (e.g., '10.1038/nature12373')",
+                    },
+                    "include_citations": {
+                        "type": "boolean",
+                        "description": "Include list of DOIs that cite this paper",
+                        "default": False,
+                    },
+                    "include_references": {
+                        "type": "boolean",
+                        "description": "Include list of DOIs this paper references",
+                        "default": False,
+                    },
+                },
+                "required": ["doi"],
+            },
+        ),
+        types.Tool(
+            name="crossref_count",
+            description="Count papers matching a search query in CrossRef database.",
+            inputSchema={
+                "type": "object",
+                "properties": {
+                    "query": {
+                        "type": "string",
+                        "description": "Search query string",
+                    },
+                },
+                "required": ["query"],
+            },
+        ),
+        types.Tool(
+            name="crossref_citations",
+            description="Get citation relationships for a paper (citing papers and/or references).",
+            inputSchema={
+                "type": "object",
+                "properties": {
+                    "doi": {
+                        "type": "string",
+                        "description": "DOI of the paper",
+                    },
+                    "direction": {
+                        "type": "string",
+                        "description": "Citation direction: 'citing', 'cited', or 'both'",
+                        "enum": ["citing", "cited", "both"],
+                        "default": "citing",
+                    },
+                    "limit": {
+                        "type": "integer",
+                        "description": "Maximum results per direction",
+                        "default": 100,
+                    },
+                },
+                "required": ["doi"],
+            },
+        ),
+        types.Tool(
+            name="crossref_info",
+            description="Get CrossRef database configuration and status.",
+            inputSchema={
+                "type": "object",
+                "properties": {},
+            },
+        ),
+    ]
+
+
+# EOF