scitex 2.14.0__py3-none-any.whl → 2.15.3__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (264) hide show
  1. scitex/__init__.py +71 -17
  2. scitex/_env_loader.py +156 -0
  3. scitex/_mcp_resources/__init__.py +37 -0
  4. scitex/_mcp_resources/_cheatsheet.py +135 -0
  5. scitex/_mcp_resources/_figrecipe.py +138 -0
  6. scitex/_mcp_resources/_formats.py +102 -0
  7. scitex/_mcp_resources/_modules.py +337 -0
  8. scitex/_mcp_resources/_session.py +149 -0
  9. scitex/_mcp_tools/__init__.py +4 -0
  10. scitex/_mcp_tools/audio.py +66 -0
  11. scitex/_mcp_tools/diagram.py +11 -95
  12. scitex/_mcp_tools/introspect.py +210 -0
  13. scitex/_mcp_tools/plt.py +260 -305
  14. scitex/_mcp_tools/scholar.py +74 -0
  15. scitex/_mcp_tools/social.py +27 -0
  16. scitex/_mcp_tools/template.py +24 -0
  17. scitex/_mcp_tools/writer.py +17 -210
  18. scitex/ai/_gen_ai/_PARAMS.py +10 -7
  19. scitex/ai/classification/reporters/_SingleClassificationReporter.py +45 -1603
  20. scitex/ai/classification/reporters/_mixins/__init__.py +36 -0
  21. scitex/ai/classification/reporters/_mixins/_constants.py +67 -0
  22. scitex/ai/classification/reporters/_mixins/_cv_summary.py +387 -0
  23. scitex/ai/classification/reporters/_mixins/_feature_importance.py +119 -0
  24. scitex/ai/classification/reporters/_mixins/_metrics.py +275 -0
  25. scitex/ai/classification/reporters/_mixins/_plotting.py +179 -0
  26. scitex/ai/classification/reporters/_mixins/_reports.py +153 -0
  27. scitex/ai/classification/reporters/_mixins/_storage.py +160 -0
  28. scitex/ai/classification/timeseries/_TimeSeriesSlidingWindowSplit.py +30 -1550
  29. scitex/ai/classification/timeseries/_sliding_window_core.py +467 -0
  30. scitex/ai/classification/timeseries/_sliding_window_plotting.py +369 -0
  31. scitex/audio/README.md +40 -36
  32. scitex/audio/__init__.py +129 -61
  33. scitex/audio/_branding.py +185 -0
  34. scitex/audio/_mcp/__init__.py +32 -0
  35. scitex/audio/_mcp/handlers.py +59 -6
  36. scitex/audio/_mcp/speak_handlers.py +238 -0
  37. scitex/audio/_relay.py +225 -0
  38. scitex/audio/_tts.py +18 -10
  39. scitex/audio/engines/base.py +17 -10
  40. scitex/audio/engines/elevenlabs_engine.py +7 -2
  41. scitex/audio/mcp_server.py +228 -75
  42. scitex/canvas/README.md +1 -1
  43. scitex/canvas/editor/_dearpygui/__init__.py +25 -0
  44. scitex/canvas/editor/_dearpygui/_editor.py +147 -0
  45. scitex/canvas/editor/_dearpygui/_handlers.py +476 -0
  46. scitex/canvas/editor/_dearpygui/_panels/__init__.py +17 -0
  47. scitex/canvas/editor/_dearpygui/_panels/_control.py +119 -0
  48. scitex/canvas/editor/_dearpygui/_panels/_element_controls.py +190 -0
  49. scitex/canvas/editor/_dearpygui/_panels/_preview.py +43 -0
  50. scitex/canvas/editor/_dearpygui/_panels/_sections.py +390 -0
  51. scitex/canvas/editor/_dearpygui/_plotting.py +187 -0
  52. scitex/canvas/editor/_dearpygui/_rendering.py +504 -0
  53. scitex/canvas/editor/_dearpygui/_selection.py +295 -0
  54. scitex/canvas/editor/_dearpygui/_state.py +93 -0
  55. scitex/canvas/editor/_dearpygui/_utils.py +61 -0
  56. scitex/canvas/editor/flask_editor/_core/__init__.py +27 -0
  57. scitex/canvas/editor/flask_editor/_core/_bbox_extraction.py +200 -0
  58. scitex/canvas/editor/flask_editor/_core/_editor.py +173 -0
  59. scitex/canvas/editor/flask_editor/_core/_export_helpers.py +353 -0
  60. scitex/canvas/editor/flask_editor/_core/_routes_basic.py +190 -0
  61. scitex/canvas/editor/flask_editor/_core/_routes_export.py +332 -0
  62. scitex/canvas/editor/flask_editor/_core/_routes_panels.py +252 -0
  63. scitex/canvas/editor/flask_editor/_core/_routes_save.py +218 -0
  64. scitex/canvas/editor/flask_editor/_core.py +25 -1684
  65. scitex/canvas/editor/flask_editor/templates/__init__.py +32 -70
  66. scitex/cli/__init__.py +38 -43
  67. scitex/cli/audio.py +160 -41
  68. scitex/cli/capture.py +133 -20
  69. scitex/cli/introspect.py +488 -0
  70. scitex/cli/main.py +200 -109
  71. scitex/cli/mcp.py +60 -34
  72. scitex/cli/plt.py +414 -0
  73. scitex/cli/repro.py +15 -8
  74. scitex/cli/resource.py +15 -8
  75. scitex/cli/scholar/__init__.py +154 -8
  76. scitex/cli/scholar/_crossref_scitex.py +296 -0
  77. scitex/cli/scholar/_fetch.py +25 -3
  78. scitex/cli/social.py +355 -0
  79. scitex/cli/stats.py +136 -11
  80. scitex/cli/template.py +129 -12
  81. scitex/cli/tex.py +15 -8
  82. scitex/cli/writer.py +49 -299
  83. scitex/cloud/__init__.py +41 -2
  84. scitex/config/README.md +1 -1
  85. scitex/config/__init__.py +16 -2
  86. scitex/config/_env_registry.py +256 -0
  87. scitex/context/__init__.py +22 -0
  88. scitex/dev/__init__.py +20 -1
  89. scitex/diagram/__init__.py +42 -19
  90. scitex/diagram/mcp_server.py +13 -125
  91. scitex/gen/__init__.py +50 -14
  92. scitex/gen/_list_packages.py +4 -4
  93. scitex/introspect/__init__.py +82 -0
  94. scitex/introspect/_call_graph.py +303 -0
  95. scitex/introspect/_class_hierarchy.py +163 -0
  96. scitex/introspect/_core.py +41 -0
  97. scitex/introspect/_docstring.py +131 -0
  98. scitex/introspect/_examples.py +113 -0
  99. scitex/introspect/_imports.py +271 -0
  100. scitex/{gen/_inspect_module.py → introspect/_list_api.py} +48 -56
  101. scitex/introspect/_mcp/__init__.py +41 -0
  102. scitex/introspect/_mcp/handlers.py +233 -0
  103. scitex/introspect/_members.py +155 -0
  104. scitex/introspect/_resolve.py +89 -0
  105. scitex/introspect/_signature.py +131 -0
  106. scitex/introspect/_source.py +80 -0
  107. scitex/introspect/_type_hints.py +172 -0
  108. scitex/io/_save.py +1 -2
  109. scitex/io/bundle/README.md +1 -1
  110. scitex/logging/_formatters.py +19 -9
  111. scitex/mcp_server.py +98 -5
  112. scitex/os/__init__.py +4 -0
  113. scitex/{gen → os}/_check_host.py +4 -5
  114. scitex/plt/__init__.py +245 -550
  115. scitex/plt/_subplots/_AxisWrapperMixins/_SeabornMixin/_wrappers.py +5 -10
  116. scitex/plt/docs/EXTERNAL_PACKAGE_BRANDING.md +149 -0
  117. scitex/plt/gallery/README.md +1 -1
  118. scitex/plt/utils/_hitmap/__init__.py +82 -0
  119. scitex/plt/utils/_hitmap/_artist_extraction.py +343 -0
  120. scitex/plt/utils/_hitmap/_color_application.py +346 -0
  121. scitex/plt/utils/_hitmap/_color_conversion.py +121 -0
  122. scitex/plt/utils/_hitmap/_constants.py +40 -0
  123. scitex/plt/utils/_hitmap/_hitmap_core.py +334 -0
  124. scitex/plt/utils/_hitmap/_path_extraction.py +357 -0
  125. scitex/plt/utils/_hitmap/_query.py +113 -0
  126. scitex/plt/utils/_hitmap.py +46 -1616
  127. scitex/plt/utils/_metadata/__init__.py +80 -0
  128. scitex/plt/utils/_metadata/_artists/__init__.py +25 -0
  129. scitex/plt/utils/_metadata/_artists/_base.py +195 -0
  130. scitex/plt/utils/_metadata/_artists/_collections.py +356 -0
  131. scitex/plt/utils/_metadata/_artists/_extract.py +57 -0
  132. scitex/plt/utils/_metadata/_artists/_images.py +80 -0
  133. scitex/plt/utils/_metadata/_artists/_lines.py +261 -0
  134. scitex/plt/utils/_metadata/_artists/_patches.py +247 -0
  135. scitex/plt/utils/_metadata/_artists/_text.py +106 -0
  136. scitex/plt/utils/_metadata/_csv.py +416 -0
  137. scitex/plt/utils/_metadata/_detect.py +225 -0
  138. scitex/plt/utils/_metadata/_legend.py +127 -0
  139. scitex/plt/utils/_metadata/_rounding.py +117 -0
  140. scitex/plt/utils/_metadata/_verification.py +202 -0
  141. scitex/schema/README.md +1 -1
  142. scitex/scholar/__init__.py +8 -0
  143. scitex/scholar/_mcp/crossref_handlers.py +265 -0
  144. scitex/scholar/core/Scholar.py +63 -1700
  145. scitex/scholar/core/_mixins/__init__.py +36 -0
  146. scitex/scholar/core/_mixins/_enrichers.py +270 -0
  147. scitex/scholar/core/_mixins/_library_handlers.py +100 -0
  148. scitex/scholar/core/_mixins/_loaders.py +103 -0
  149. scitex/scholar/core/_mixins/_pdf_download.py +375 -0
  150. scitex/scholar/core/_mixins/_pipeline.py +312 -0
  151. scitex/scholar/core/_mixins/_project_handlers.py +125 -0
  152. scitex/scholar/core/_mixins/_savers.py +69 -0
  153. scitex/scholar/core/_mixins/_search.py +103 -0
  154. scitex/scholar/core/_mixins/_services.py +88 -0
  155. scitex/scholar/core/_mixins/_url_finding.py +105 -0
  156. scitex/scholar/crossref_scitex.py +367 -0
  157. scitex/scholar/docs/EXTERNAL_PACKAGE_BRANDING.md +149 -0
  158. scitex/scholar/examples/00_run_all.sh +120 -0
  159. scitex/scholar/jobs/_executors.py +27 -3
  160. scitex/scholar/pdf_download/ScholarPDFDownloader.py +38 -416
  161. scitex/scholar/pdf_download/_cli.py +154 -0
  162. scitex/scholar/pdf_download/strategies/__init__.py +11 -8
  163. scitex/scholar/pdf_download/strategies/manual_download_fallback.py +80 -3
  164. scitex/scholar/pipelines/ScholarPipelineBibTeX.py +73 -121
  165. scitex/scholar/pipelines/ScholarPipelineParallel.py +80 -138
  166. scitex/scholar/pipelines/ScholarPipelineSingle.py +43 -63
  167. scitex/scholar/pipelines/_single_steps.py +71 -36
  168. scitex/scholar/storage/_LibraryManager.py +97 -1695
  169. scitex/scholar/storage/_mixins/__init__.py +30 -0
  170. scitex/scholar/storage/_mixins/_bibtex_handlers.py +128 -0
  171. scitex/scholar/storage/_mixins/_library_operations.py +218 -0
  172. scitex/scholar/storage/_mixins/_metadata_conversion.py +226 -0
  173. scitex/scholar/storage/_mixins/_paper_saving.py +456 -0
  174. scitex/scholar/storage/_mixins/_resolution.py +376 -0
  175. scitex/scholar/storage/_mixins/_storage_helpers.py +121 -0
  176. scitex/scholar/storage/_mixins/_symlink_handlers.py +226 -0
  177. scitex/security/README.md +3 -3
  178. scitex/session/README.md +1 -1
  179. scitex/session/__init__.py +26 -7
  180. scitex/session/_decorator.py +1 -1
  181. scitex/sh/README.md +1 -1
  182. scitex/sh/__init__.py +7 -4
  183. scitex/social/__init__.py +155 -0
  184. scitex/social/docs/EXTERNAL_PACKAGE_BRANDING.md +149 -0
  185. scitex/stats/_mcp/_handlers/__init__.py +31 -0
  186. scitex/stats/_mcp/_handlers/_corrections.py +113 -0
  187. scitex/stats/_mcp/_handlers/_descriptive.py +78 -0
  188. scitex/stats/_mcp/_handlers/_effect_size.py +106 -0
  189. scitex/stats/_mcp/_handlers/_format.py +94 -0
  190. scitex/stats/_mcp/_handlers/_normality.py +110 -0
  191. scitex/stats/_mcp/_handlers/_posthoc.py +224 -0
  192. scitex/stats/_mcp/_handlers/_power.py +247 -0
  193. scitex/stats/_mcp/_handlers/_recommend.py +102 -0
  194. scitex/stats/_mcp/_handlers/_run_test.py +279 -0
  195. scitex/stats/_mcp/_handlers/_stars.py +48 -0
  196. scitex/stats/_mcp/handlers.py +19 -1171
  197. scitex/stats/auto/_stat_style.py +175 -0
  198. scitex/stats/auto/_style_definitions.py +411 -0
  199. scitex/stats/auto/_styles.py +22 -620
  200. scitex/stats/descriptive/__init__.py +11 -8
  201. scitex/stats/descriptive/_ci.py +39 -0
  202. scitex/stats/power/_power.py +15 -4
  203. scitex/str/__init__.py +2 -1
  204. scitex/str/_title_case.py +63 -0
  205. scitex/template/README.md +1 -1
  206. scitex/template/__init__.py +25 -10
  207. scitex/template/_code_templates.py +147 -0
  208. scitex/template/_mcp/handlers.py +81 -0
  209. scitex/template/_mcp/tool_schemas.py +55 -0
  210. scitex/template/_templates/__init__.py +51 -0
  211. scitex/template/_templates/audio.py +233 -0
  212. scitex/template/_templates/canvas.py +312 -0
  213. scitex/template/_templates/capture.py +268 -0
  214. scitex/template/_templates/config.py +43 -0
  215. scitex/template/_templates/diagram.py +294 -0
  216. scitex/template/_templates/io.py +107 -0
  217. scitex/template/_templates/module.py +53 -0
  218. scitex/template/_templates/plt.py +202 -0
  219. scitex/template/_templates/scholar.py +267 -0
  220. scitex/template/_templates/session.py +130 -0
  221. scitex/template/_templates/session_minimal.py +43 -0
  222. scitex/template/_templates/session_plot.py +67 -0
  223. scitex/template/_templates/session_stats.py +77 -0
  224. scitex/template/_templates/stats.py +323 -0
  225. scitex/template/_templates/writer.py +296 -0
  226. scitex/template/clone_writer_directory.py +5 -5
  227. scitex/ui/_backends/_email.py +10 -2
  228. scitex/ui/_backends/_webhook.py +5 -1
  229. scitex/web/_search_pubmed.py +10 -6
  230. scitex/writer/README.md +1 -1
  231. scitex/writer/__init__.py +43 -34
  232. scitex/writer/_mcp/handlers.py +11 -744
  233. scitex/writer/_mcp/tool_schemas.py +5 -335
  234. scitex-2.15.3.dist-info/METADATA +667 -0
  235. {scitex-2.14.0.dist-info → scitex-2.15.3.dist-info}/RECORD +241 -120
  236. scitex/canvas/editor/flask_editor/templates/_scripts.py +0 -4933
  237. scitex/canvas/editor/flask_editor/templates/_styles.py +0 -1658
  238. scitex/diagram/_compile.py +0 -312
  239. scitex/diagram/_diagram.py +0 -355
  240. scitex/diagram/_mcp/__init__.py +0 -4
  241. scitex/diagram/_mcp/handlers.py +0 -400
  242. scitex/diagram/_mcp/tool_schemas.py +0 -157
  243. scitex/diagram/_presets.py +0 -173
  244. scitex/diagram/_schema.py +0 -182
  245. scitex/diagram/_split.py +0 -278
  246. scitex/gen/_ci.py +0 -12
  247. scitex/gen/_title_case.py +0 -89
  248. scitex/plt/_mcp/__init__.py +0 -4
  249. scitex/plt/_mcp/_handlers_annotation.py +0 -102
  250. scitex/plt/_mcp/_handlers_figure.py +0 -195
  251. scitex/plt/_mcp/_handlers_plot.py +0 -252
  252. scitex/plt/_mcp/_handlers_style.py +0 -219
  253. scitex/plt/_mcp/handlers.py +0 -74
  254. scitex/plt/_mcp/tool_schemas.py +0 -497
  255. scitex/plt/mcp_server.py +0 -231
  256. scitex/scholar/examples/SUGGESTIONS.md +0 -865
  257. scitex/scholar/examples/dev.py +0 -38
  258. scitex-2.14.0.dist-info/METADATA +0 -1238
  259. /scitex/{gen → context}/_detect_environment.py +0 -0
  260. /scitex/{gen → context}/_get_notebook_path.py +0 -0
  261. /scitex/{gen/_shell.py → sh/_shell_legacy.py} +0 -0
  262. {scitex-2.14.0.dist-info → scitex-2.15.3.dist-info}/WHEEL +0 -0
  263. {scitex-2.14.0.dist-info → scitex-2.15.3.dist-info}/entry_points.txt +0 -0
  264. {scitex-2.14.0.dist-info → scitex-2.15.3.dist-info}/licenses/LICENSE +0 -0
@@ -0,0 +1,113 @@
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+ #!/usr/bin/env python3
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+ # Timestamp: "2026-01-24 (ywatanabe)"
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+ # File: /home/ywatanabe/proj/scitex-python/src/scitex/plt/utils/_hitmap/_query.py
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+
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+ """
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+ Hitmap query and save functions.
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+
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+ This module provides functions to query hitmap data and save hitmaps as PNG files.
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+ """
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+
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+ from typing import Any, Dict, List
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+
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+ import numpy as np
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+
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+ __all__ = [
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+ "query_hitmap_neighborhood",
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+ "save_hitmap_png",
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+ ]
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+
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+
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+ def query_hitmap_neighborhood(
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+ hitmap: np.ndarray,
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+ x: int,
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+ y: int,
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+ color_map: Dict[int, Dict[str, Any]],
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+ radius: int = 2,
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+ ) -> List[Dict[str, Any]]:
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+ """
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+ Query hit map with neighborhood sampling for smart selection.
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+
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+ Finds all element IDs in a neighborhood around the click point,
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+ enabling selection of overlapping elements and thin lines.
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+
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+ Parameters
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+ ----------
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+ hitmap : np.ndarray
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+ Hit map array (uint32, element IDs from RGB encoding).
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+ x : int
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+ X coordinate (column) of click point.
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+ y : int
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+ Y coordinate (row) of click point.
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+ color_map : dict
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+ Mapping from element ID to element info.
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+ radius : int
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+ Sampling radius (e.g., 2 = 5x5 neighborhood).
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+
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+ Returns
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+ -------
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+ list of dict
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+ List of element info dicts for all elements found in neighborhood,
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+ sorted by distance from click point (closest first).
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+
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+ Notes
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+ -----
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+ Use cases:
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+ - Alt+Click to select objects underneath (lower z-order)
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+ - Click on thin lines that might be missed with exact pixel
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+ - Show candidate list when multiple elements overlap
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+ """
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+ h, w = hitmap.shape
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+ found_ids = set()
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+ id_distances = {}
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+
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+ # Sample neighborhood
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+ for dy in range(-radius, radius + 1):
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+ for dx in range(-radius, radius + 1):
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+ ny, nx = y + dy, x + dx
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+ if 0 <= ny < h and 0 <= nx < w:
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+ element_id = int(hitmap[ny, nx])
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+ if element_id > 0 and element_id in color_map:
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+ found_ids.add(element_id)
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+ # Track minimum distance for each ID
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+ dist = abs(dx) + abs(dy) # Manhattan distance
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+ if (
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+ element_id not in id_distances
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+ or dist < id_distances[element_id]
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+ ):
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+ id_distances[element_id] = dist
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+
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+ # Sort by distance (closest first), then by ID for stability
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+ sorted_ids = sorted(found_ids, key=lambda eid: (id_distances[eid], eid))
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+
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+ return [color_map[eid] for eid in sorted_ids]
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+
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+
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+ def save_hitmap_png(hitmap: np.ndarray, path: str, color_map: Dict = None):
87
+ """
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+ Save hit map as a PNG file (RGB encoding for 24-bit IDs).
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+
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+ Parameters
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+ ----------
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+ hitmap : np.ndarray
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+ Hit map array (uint32, element IDs from 24-bit RGB encoding).
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+ path : str
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+ Output path for PNG file.
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+ color_map : dict, optional
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+ Color map for visualization (unused, kept for API compatibility).
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+ """
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+ from PIL import Image
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+
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+ # Convert 24-bit IDs back to RGB for PNG storage
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+ h, w = hitmap.shape
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+ rgb = np.zeros((h, w, 3), dtype=np.uint8)
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+ rgb[:, :, 0] = (hitmap >> 16) & 0xFF # R
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+ rgb[:, :, 1] = (hitmap >> 8) & 0xFF # G
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+ rgb[:, :, 2] = hitmap & 0xFF # B
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+
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+ # Save as RGB PNG (preserves exact ID values)
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+ img = Image.fromarray(rgb, mode="RGB")
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+ img.save(path)
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+
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+
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+ # EOF