scitex 2.10.3__py3-none-any.whl → 2.13.0__py3-none-any.whl

scitex-2.10.3.dist-info/METADATA

@@ -1,952 +0,0 @@
-Metadata-Version: 2.4
-Name: scitex
-Version: 2.10.3
-Summary: A comprehensive Python library for scientific computing and data analysis
-Project-URL: Homepage, https://github.com/ywatanabe1989/scitex-code
-Project-URL: Documentation, https://scitex.readthedocs.io
-Project-URL: Repository, https://github.com/ywatanabe1989/scitex-code
-Project-URL: Bug Tracker, https://github.com/ywatanabe1989/scitex-code/issues
-Author-email: Yusuke Watanabe <ywatanabe@scitex.ai>
-License: AGPL-3.0
-License-File: LICENSE
-Keywords: data-analysis,machine-learning,neural-networks,research,scientific-computing,signal-processing
-Classifier: Development Status :: 4 - Beta
-Classifier: Intended Audience :: Developers
-Classifier: Intended Audience :: Science/Research
-Classifier: License :: OSI Approved :: GNU Affero General Public License v3
-Classifier: Operating System :: OS Independent
-Classifier: Programming Language :: Python :: 3
-Classifier: Programming Language :: Python :: 3.8
-Classifier: Programming Language :: Python :: 3.9
-Classifier: Programming Language :: Python :: 3.10
-Classifier: Programming Language :: Python :: 3.11
-Classifier: Programming Language :: Python :: 3.12
-Classifier: Topic :: Scientific/Engineering
-Classifier: Topic :: Scientific/Engineering :: Artificial Intelligence
-Classifier: Topic :: Scientific/Engineering :: Information Analysis
-Classifier: Topic :: Software Development :: Libraries :: Python Modules
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-
-<!-- ---
-!-- Timestamp: 2026-01-05 16:58:59
-!-- Author: ywatanabe
-!-- File: /home/ywatanabe/proj/scitex-code/README.md
-!-- --- -->
-
-# SciTeX
-
-A Python framework for scientific research that makes the entire research pipeline more standardized, structured, and reproducible by automating repetitive processes.
-
-Part of the fully open-source SciTeX project: https://scitex.ai
-
-<!-- badges -->
-[![PyPI version](https://badge.fury.io/py/scitex.svg)](https://badge.fury.io/py/scitex)
-[![Python Versions](https://img.shields.io/pypi/pyversions/scitex.svg)](https://pypi.org/project/scitex/)
-[![License](https://img.shields.io/github/license/ywatanabe1989/SciTeX-Code)](https://github.com/ywatanabe1989/SciTeX-Code/blob/main/LICENSE)
-[![Documentation](https://readthedocs.org/projects/scitex/badge/?version=latest)](https://scitex.readthedocs.io/en/latest/?badge=latest)
-[![Code Style](https://img.shields.io/badge/code%20style-black-000000.svg)](https://github.com/psf/black)
-[![Pre-commit](https://img.shields.io/badge/pre--commit-enabled-brightgreen?logo=pre-commit&logoColor=white)](https://github.com/pre-commit/pre-commit)
-
-<details>
-<summary><strong>Module Test Status (v2.10.0) - 41 modules</strong></summary>
-
-**Core Modules**
-
-[![io](https://github.com/ywatanabe1989/scitex-code/actions/workflows/test-io.yml/badge.svg)](https://github.com/ywatanabe1989/scitex-code/actions/workflows/test-io.yml)
-[![path](https://github.com/ywatanabe1989/scitex-code/actions/workflows/test-path.yml/badge.svg)](https://github.com/ywatanabe1989/scitex-code/actions/workflows/test-path.yml)
-[![str](https://github.com/ywatanabe1989/scitex-code/actions/workflows/test-str.yml/badge.svg)](https://github.com/ywatanabe1989/scitex-code/actions/workflows/test-str.yml)
-[![dict](https://github.com/ywatanabe1989/scitex-code/actions/workflows/test-dict.yml/badge.svg)](https://github.com/ywatanabe1989/scitex-code/actions/workflows/test-dict.yml)
-[![types](https://github.com/ywatanabe1989/scitex-code/actions/workflows/test-types.yml/badge.svg)](https://github.com/ywatanabe1989/scitex-code/actions/workflows/test-types.yml)
-[![config](https://github.com/ywatanabe1989/scitex-code/actions/workflows/test-config.yml/badge.svg)](https://github.com/ywatanabe1989/scitex-code/actions/workflows/test-config.yml)
-[![utils](https://github.com/ywatanabe1989/scitex-code/actions/workflows/test-utils.yml/badge.svg)](https://github.com/ywatanabe1989/scitex-code/actions/workflows/test-utils.yml)
-[![decorators](https://github.com/ywatanabe1989/scitex-code/actions/workflows/test-decorators.yml/badge.svg)](https://github.com/ywatanabe1989/scitex-code/actions/workflows/test-decorators.yml)
-[![logging](https://github.com/ywatanabe1989/scitex-code/actions/workflows/test-logging.yml/badge.svg)](https://github.com/ywatanabe1989/scitex-code/actions/workflows/test-logging.yml)
-[![stats](https://github.com/ywatanabe1989/scitex-code/actions/workflows/test-stats.yml/badge.svg)](https://github.com/ywatanabe1989/scitex-code/actions/workflows/test-stats.yml)
-[![pd](https://github.com/ywatanabe1989/scitex-code/actions/workflows/test-pd.yml/badge.svg)](https://github.com/ywatanabe1989/scitex-code/actions/workflows/test-pd.yml)
-[![linalg](https://github.com/ywatanabe1989/scitex-code/actions/workflows/test-linalg.yml/badge.svg)](https://github.com/ywatanabe1989/scitex-code/actions/workflows/test-linalg.yml)
-[![torch](https://github.com/ywatanabe1989/scitex-code/actions/workflows/test-torch.yml/badge.svg)](https://github.com/ywatanabe1989/scitex-code/actions/workflows/test-torch.yml)
-[![gen](https://github.com/ywatanabe1989/scitex-code/actions/workflows/test-gen.yml/badge.svg)](https://github.com/ywatanabe1989/scitex-code/actions/workflows/test-gen.yml)
-
-**Extended Modules**
-
-[![nn](https://github.com/ywatanabe1989/scitex-code/actions/workflows/test-nn.yml/badge.svg)](https://github.com/ywatanabe1989/scitex-code/actions/workflows/test-nn.yml)
-[![ai](https://github.com/ywatanabe1989/scitex-code/actions/workflows/test-ai.yml/badge.svg)](https://github.com/ywatanabe1989/scitex-code/actions/workflows/test-ai.yml)
-[![writer](https://github.com/ywatanabe1989/scitex-code/actions/workflows/test-writer.yml/badge.svg)](https://github.com/ywatanabe1989/scitex-code/actions/workflows/test-writer.yml)
-[![audio](https://github.com/ywatanabe1989/scitex-code/actions/workflows/test-audio.yml/badge.svg)](https://github.com/ywatanabe1989/scitex-code/actions/workflows/test-audio.yml)
-[![capture](https://github.com/ywatanabe1989/scitex-code/actions/workflows/test-capture.yml/badge.svg)](https://github.com/ywatanabe1989/scitex-code/actions/workflows/test-capture.yml)
-[![cli](https://github.com/ywatanabe1989/scitex-code/actions/workflows/test-cli.yml/badge.svg)](https://github.com/ywatanabe1989/scitex-code/actions/workflows/test-cli.yml)
-[![sh](https://github.com/ywatanabe1989/scitex-code/actions/workflows/test-sh.yml/badge.svg)](https://github.com/ywatanabe1989/scitex-code/actions/workflows/test-sh.yml)
-[![git](https://github.com/ywatanabe1989/scitex-code/actions/workflows/test-git.yml/badge.svg)](https://github.com/ywatanabe1989/scitex-code/actions/workflows/test-git.yml)
-[![session](https://github.com/ywatanabe1989/scitex-code/actions/workflows/test-session.yml/badge.svg)](https://github.com/ywatanabe1989/scitex-code/actions/workflows/test-session.yml)
-[![diagram](https://github.com/ywatanabe1989/scitex-code/actions/workflows/test-diagram.yml/badge.svg)](https://github.com/ywatanabe1989/scitex-code/actions/workflows/test-diagram.yml)
-[![resource](https://github.com/ywatanabe1989/scitex-code/actions/workflows/test-resource.yml/badge.svg)](https://github.com/ywatanabe1989/scitex-code/actions/workflows/test-resource.yml)
-[![repro](https://github.com/ywatanabe1989/scitex-code/actions/workflows/test-repro.yml/badge.svg)](https://github.com/ywatanabe1989/scitex-code/actions/workflows/test-repro.yml)
-[![benchmark](https://github.com/ywatanabe1989/scitex-code/actions/workflows/test-benchmark.yml/badge.svg)](https://github.com/ywatanabe1989/scitex-code/actions/workflows/test-benchmark.yml)
-[![security](https://github.com/ywatanabe1989/scitex-code/actions/workflows/test-security.yml/badge.svg)](https://github.com/ywatanabe1989/scitex-code/actions/workflows/test-security.yml)
-[![tex](https://github.com/ywatanabe1989/scitex-code/actions/workflows/test-tex.yml/badge.svg)](https://github.com/ywatanabe1989/scitex-code/actions/workflows/test-tex.yml)
-[![msword](https://github.com/ywatanabe1989/scitex-code/actions/workflows/test-msword.yml/badge.svg)](https://github.com/ywatanabe1989/scitex-code/actions/workflows/test-msword.yml)
-[![web](https://github.com/ywatanabe1989/scitex-code/actions/workflows/test-web.yml/badge.svg)](https://github.com/ywatanabe1989/scitex-code/actions/workflows/test-web.yml)
-[![dev](https://github.com/ywatanabe1989/scitex-code/actions/workflows/test-dev.yml/badge.svg)](https://github.com/ywatanabe1989/scitex-code/actions/workflows/test-dev.yml)
-[![dt](https://github.com/ywatanabe1989/scitex-code/actions/workflows/test-dt.yml/badge.svg)](https://github.com/ywatanabe1989/scitex-code/actions/workflows/test-dt.yml)
-[![scholar](https://github.com/ywatanabe1989/scitex-code/actions/workflows/test-scholar.yml/badge.svg)](https://github.com/ywatanabe1989/scitex-code/actions/workflows/test-scholar.yml)
-
-**Pending Modules**
-
-[![dsp](https://github.com/ywatanabe1989/scitex-code/actions/workflows/test-dsp.yml/badge.svg)](https://github.com/ywatanabe1989/scitex-code/actions/workflows/test-dsp.yml)
-[![db](https://github.com/ywatanabe1989/scitex-code/actions/workflows/test-db.yml/badge.svg)](https://github.com/ywatanabe1989/scitex-code/actions/workflows/test-db.yml)
-[![browser](https://github.com/ywatanabe1989/scitex-code/actions/workflows/test-browser.yml/badge.svg)](https://github.com/ywatanabe1989/scitex-code/actions/workflows/test-browser.yml)
-[![plt](https://github.com/ywatanabe1989/scitex-code/actions/workflows/test-plt.yml/badge.svg)](https://github.com/ywatanabe1989/scitex-code/actions/workflows/test-plt.yml)
-[![schema](https://github.com/ywatanabe1989/scitex-code/actions/workflows/test-schema.yml/badge.svg)](https://github.com/ywatanabe1989/scitex-code/actions/workflows/test-schema.yml)
-[![bridge](https://github.com/ywatanabe1989/scitex-code/actions/workflows/test-bridge.yml/badge.svg)](https://github.com/ywatanabe1989/scitex-code/actions/workflows/test-bridge.yml)
-[![fts](https://github.com/ywatanabe1989/scitex-code/actions/workflows/test-fts.yml/badge.svg)](https://github.com/ywatanabe1989/scitex-code/actions/workflows/test-fts.yml)
-
-</details>
-
-## 📦 Installation
-
-``` bash
-pip install scitex[all]   # Recommended: Full installation with all modules
-pip install scitex        # Core only (numpy, pandas, PyYAML, tqdm)
-```
-
-<details>
-<summary><strong>Module Overview</strong></summary>
-
-SciTeX is organized into focused modules for different aspects of scientific computing:
-
-**Modular Installation** (See [./src/scitex](./src/scitex) for all available modules):
-``` bash
-# Install specific modules
-pip install scitex[ai]              # AI/ML module
-pip install scitex[ai,audio,writer] # Multiple modules
-pip install scitex[all]             # Everything
-```
-
-## 📦 Module Overview
-
-### 🔧 Core Utilities
-| Module                                          | Description                                                         |
-|-------------------------------------------------|---------------------------------------------------------------------|
-| [`scitex.gen`](./src/scitex/gen#readme)         | Project setup, session management, and experiment tracking          |
-| [`scitex.io`](./src/scitex/io#readme)           | Universal I/O for 30+ formats (CSV, JSON, HDF5, Zarr, pickle, etc.) |
-| [`scitex.path`](./src/scitex/path#readme)       | Path manipulation and project structure utilities                   |
-| [`scitex.logging`](./src/scitex/logging#readme) | Structured logging with color support and context                   |
-
-### 📊 Data Science & Statistics
-| Module                                      | Description                                                              |
-|---------------------------------------------|--------------------------------------------------------------------------|
-| [`scitex.stats`](./src/scitex/stats#readme) | 16 statistical tests, effect sizes, power analysis, multiple corrections |
-| [`scitex.plt`](./src/scitex/plt#readme)     | Enhanced matplotlib with auto-export and scientific captions             |
-| [`scitex.pd`](./src/scitex/pd#readme)       | Pandas extensions for research workflows                                 |
-
-### 🧠 AI & Machine Learning
-| Module                                      | Description                                             |
-|---------------------------------------------|---------------------------------------------------------|
-| [`scitex.ai`](./src/scitex/ai#readme)       | GenAI (7 providers), classification, training utilities |
-| [`scitex.torch`](./src/scitex/torch#readme) | PyTorch training loops, metrics, and utilities          |
-| [`scitex.nn`](./src/scitex/nn#readme)       | Custom neural network layers                            |
-
-### 🌊 Signal Processing
-| Module                                  | Description                                                   |
-|-----------------------------------------|---------------------------------------------------------------|
-| [`scitex.dsp`](./src/scitex/dsp#readme) | Filtering, spectral analysis, wavelets, PAC, ripple detection |
-
-### 📚 Literature Management
-| Module                                          | Description                                                     |
-|-------------------------------------------------|-----------------------------------------------------------------|
-| [`scitex.scholar`](./src/scitex/scholar#readme) | Paper search, PDF download, BibTeX enrichment with IF/citations |
-
-### 🌐 Web & Browser
-| Module                                          | Description                                                |
-|-------------------------------------------------|------------------------------------------------------------|
-| [`scitex.browser`](./src/scitex/browser#readme) | Playwright automation with debugging, PDF handling, popups |
-
-### 🗄️ Data Management
-| Module                                | Description                         |
-|---------------------------------------|-------------------------------------|
-| [`scitex.db`](./src/scitex/db#readme) | SQLite3 and PostgreSQL abstractions |
-
-### 🛠️ Utilities
-| Module                                                | Description                                         |
-|-------------------------------------------------------|-----------------------------------------------------|
-| [`scitex.decorators`](./src/scitex/decorators#readme) | Function decorators for caching, timing, validation |
-| [`scitex.rng`](./src/scitex/rng#readme)               | Reproducible random number generation               |
-| [`scitex.resource`](./src/scitex/resource#readme)     | System resource monitoring (CPU, memory, GPU)       |
-| [`scitex.dict`](./src/scitex/dict#readme)             | Dictionary manipulation and nested access           |
-| [`scitex.str`](./src/scitex/str#readme)               | String utilities for scientific text processing     |
-
-## 📖 Documentation
-
-### Online Documentation
-- **[Read the Docs](https://scitex.readthedocs.io/)**: Complete API reference and guides
-- **[Interactive Examples](https://scitex.readthedocs.io/en/latest/examples/index.html)**: Browse all tutorial notebooks
-- **[Quick Start Guide](https://scitex.readthedocs.io/en/latest/getting_started.html)**: Get up and running quickly
-
-### Local Resources
-- **[Master Tutorial Index](./examples/00_SCITEX_MASTER_INDEX.ipynb)**: Comprehensive guide to all features
-- **[Examples Directory](./examples/)**: 25+ Jupyter notebooks covering all modules
-- **[Module List](./docs/scitex_modules.csv)**: Complete list of all functions
-- **(Experimental) [MCP Servers Documentation](./mcp_servers/README.md)**
-
-### Key Tutorials
-1. **[I/O Operations](./examples/01_scitex_io.ipynb)**: Essential file handling (start here!)
-2. **[Plotting](./examples/14_scitex_plt.ipynb)**: Publication-ready visualizations
-3. **[Statistics](./examples/11_scitex_stats.ipynb)**: Research-grade statistical analysis
-4. **[Scholar](./examples/16_scitex_scholar.ipynb)**: Literature management with impact factors
-5. **[AI/ML](./examples/16_scitex_ai.ipynb)**: Complete machine learning toolkit
-
-
-</details>
-
-<details>
-<summary><strong>Arial Font Setup</strong></summary>
-
-``` bash
-# Ubuntu
-sudo apt update
-sudo apt-get install ttf-mscorefonts-installer
-sudo DEBIAN_FRONTEND=noninteractive \
-    apt install -y ttf-mscorefonts-installer
-sudo mkdir -p /usr/share/fonts/truetype/custom
-sudo cp /mnt/c/Windows/Fonts/arial*.ttf /usr/share/fonts/truetype/custom/
-sudo fc-cache -fv
-rm ~/.cache/matplotlib -rf
-
-# WSL
-mkdir -p ~/.local/share/fonts/windows
-cp /mnt/c/Windows/Fonts/arial*.ttf ~/.local/share/fonts/windows/
-fc-cache -fv ~/.local/share/fonts/windows
-rm ~/.cache/matplotlib -rf
-```
-
-``` python
-# Check
-import matplotlib
-print(matplotlib.rcParams['font.family'])
-
-import matplotlib.font_manager as fm
-fonts = fm.findSystemFonts()
-print("Arial found:", any("Arial" in f or "arial" in f for f in fonts))
-[a for a in fonts if "Arial" in a or "arial" in a][:5]
-
-import matplotlib as mpl
-import matplotlib.pyplot as plt
-
-mpl.rcParams["font.family"] = "Arial"
-mpl.rcParams["font.sans-serif"] = ["Arial"]  # 念のため
-
-fig, ax = plt.subplots(figsize=(3, 2))
-ax.text(0.5, 0.5, "Arial Test", fontsize=32, ha="center", va="center")
-ax.set_axis_off()
-
-fig.savefig("arial_test.png", dpi=300)
-plt.close(fig)
-```
-
-</details>
-
-## 🚀 Quick Start
-
-
-### The SciTeX Advantage: **70% Less Code**
-
-Compare these two implementations that produce **identical research outputs**:
-
-#### With SciTeX ([57 Lines of Code]((./examples/demo_session_plt_io.py)))
-
-```python
-#!/usr/bin/env python3
-# -*- coding: utf-8 -*-
-# Timestamp: "2025-11-18 09:34:36 (ywatanabe)"
-# File: /home/ywatanabe/proj/scitex-code/examples/demo_session_plt_io.py
-
-
-"""Minimal Demonstration for scitex.{session,io,plt}"""
-
-import numpy as np
-import scitex as stx
-
-
-def demo(filename, verbose=False):
-    """Show metadata without QR code (just embedded)."""
-
-    # matplotlib.pyplot wrapper.
-    fig, ax = stx.plt.subplots()
-
-    t = np.linspace(0, 2, 1000)
-    signal = np.sin(2 * np.pi * 5 * t) * np.exp(-t / 2)
-
-    ax.plot_line(t, signal)  # Original plot for automatic CSV export
-    ax.set_xyt(
-        "Time (s)",
-        "Amplitude",
-        "Clean Figure (metadata embedded, no QR overlay)",
-    )
-
-    # Saving: stx.io.save(obj, rel_path, **kwargs)
-    stx.io.save(
-        fig,
-        filename,
-        metadata={"exp": "s01", "subj": "S001"},  # with meatadata embedding
-        symlink_to="./data",  # Symlink for centralized outputs
-        verbose=verbose,  # Automatic terminal logging (no manual print())
-    )
-    fig.close()
-
-    # Loading: stx.io.load(path)
-    ldir = __file__.replace(".py", "_out")
-    img, meta = stx.io.load(
-        f"{ldir}/{filename}",
-        verbose=verbose,
-    )
-
-
-@stx.session
-def main(filename="demo.jpg", verbose=True):
-    """Run demo for scitex.{session,plt,io}."""
-
-    demo(filename, verbose=verbose)
-
-    return 0
-
-
-if __name__ == "__main__":
-    main()
-```
-
-
-<details>
-<summary><strong>Equivalent without SciTeX ([188 Lines of Code](./examples/demo_session_plt_io_pure_python.py)), requiring 3.3× more code</strong></summary>
-
-```python
-#!/usr/bin/env python3
-# -*- coding: utf-8 -*-
-# Timestamp: "2025-11-18 09:34:51 (ywatanabe)"
-# File: /home/ywatanabe/proj/scitex-code/examples/demo_session_plt_io_pure_python.py
-
-
-"""Minimal Demonstration - Pure Python Version"""
-
-import argparse
-import json
-import logging
-import os
-import shutil
-import sys
-from datetime import datetime
-from pathlib import Path
-import random
-import string
-
-import matplotlib.pyplot as plt
-import numpy as np
-from PIL import Image
-from PIL.PngImagePlugin import PngInfo
-
-
-def generate_session_id():
-    """Generate unique session ID."""
-    timestamp = datetime.now().strftime("%Y-%m-%d_%H-%M-%S")
-    random_suffix = ''.join(random.choices(string.ascii_uppercase + string.digits, k=4))
-    return f"{timestamp}_{random_suffix}"
-
-
-def setup_logging(log_dir):
-    """Set up logging infrastructure."""
-    log_dir.mkdir(parents=True, exist_ok=True)
-    logger = logging.getLogger(__name__)
-    logger.setLevel(logging.INFO)
-    
-    stdout_handler = logging.FileHandler(log_dir / "stdout.log")
-    stderr_handler = logging.FileHandler(log_dir / "stderr.log")
-    console_handler = logging.StreamHandler(sys.stdout)
-    
-    formatter = logging.Formatter('%(levelname)s: %(message)s')
-    stdout_handler.setFormatter(formatter)
-    stderr_handler.setFormatter(formatter)
-    console_handler.setFormatter(formatter)
-    
-    logger.addHandler(stdout_handler)
-    logger.addHandler(stderr_handler)
-    logger.addHandler(console_handler)
-    
-    return logger
-
-
-def save_plot_data_to_csv(fig, output_path):
-    """Extract and save plot data."""
-    csv_path = output_path.with_suffix('.csv')
-    data_lines = ["ax_00_plot_line_0_line_x,ax_00_plot_line_0_line_y"]
-    
-    for ax in fig.get_axes():
-        for line in ax.get_lines():
-            x_data = line.get_xdata()
-            y_data = line.get_ydata()
-            for x, y in zip(x_data, y_data):
-                data_lines.append(f"{x},{y}")
-    
-    csv_path.write_text('\n'.join(data_lines))
-    return csv_path, csv_path.stat().st_size / 1024
-
-
-def embed_metadata_in_image(image_path, metadata):
-    """Embed metadata into image file."""
-    img = Image.open(image_path)
-    
-    if image_path.suffix.lower() in ['.png']:
-        pnginfo = PngInfo()
-        for key, value in metadata.items():
-            pnginfo.add_text(key, str(value))
-        img.save(image_path, pnginfo=pnginfo)
-    elif image_path.suffix.lower() in ['.jpg', '.jpeg']:
-        json_path = image_path.with_suffix(image_path.suffix + '.meta.json')
-        json_path.write_text(json.dumps(metadata, indent=2))
-        img.save(image_path, quality=95)
-
-
-def save_figure(fig, output_path, metadata=None, symlink_to=None, logger=None):
-    """Save figure with metadata and symlink."""
-    output_path = Path(output_path)
-    output_path.parent.mkdir(parents=True, exist_ok=True)
-    
-    if metadata is None:
-        metadata = {}
-    metadata['url'] = 'https://scitex.ai'
-    
-    if logger:
-        logger.info(f"📝 Saving figure with metadata to: {output_path}")
-        logger.info(f"  • Embedded metadata: {metadata}")
-    
-    csv_path, csv_size = save_plot_data_to_csv(fig, output_path)
-    if logger:
-        logger.info(f"✅ Saved to: {csv_path} ({csv_size:.1f} KiB)")
-    
-    fig.savefig(output_path, dpi=150, bbox_inches='tight')
-    embed_metadata_in_image(output_path, metadata)
-    
-    if symlink_to:
-        symlink_dir = Path(symlink_to)
-        symlink_dir.mkdir(parents=True, exist_ok=True)
-        symlink_path = symlink_dir / output_path.name
-        if symlink_path.exists() or symlink_path.is_symlink():
-            symlink_path.unlink()
-        symlink_path.symlink_to(output_path.resolve())
-
-
-def demo(output_dir, filename, verbose=False, logger=None):
-    """Generate, plot, and save signal."""
-    fig, ax = plt.subplots(figsize=(8, 6))
-    
-    t = np.linspace(0, 2, 1000)
-    signal = np.sin(2 * np.pi * 5 * t) * np.exp(-t / 2)
-    
-    ax.plot(t, signal)
-    ax.set_xlabel("Time (s)")
-    ax.set_ylabel("Amplitude")
-    ax.set_title("Damped Oscillation")
-    ax.grid(True, alpha=0.3)
-    
-    output_path = output_dir / filename
-    save_figure(fig, output_path, metadata={"exp": "s01", "subj": "S001"},
-                symlink_to=output_dir.parent / "data", logger=logger)
-    plt.close(fig)
-    
-    return 0
-
-
-def main():
-    """Run demo - Pure Python Version."""
-    parser = argparse.ArgumentParser(description="Run demo - Pure Python Version")
-    parser.add_argument('-f', '--filename', default='demo.jpg')
-    parser.add_argument('-v', '--verbose', type=bool, default=True)
-    args = parser.parse_args()
-    
-    session_id = generate_session_id()
-    script_path = Path(__file__).resolve()
-    output_base = script_path.parent / (script_path.stem + "_out")
-    running_dir = output_base / "RUNNING" / session_id
-    logs_dir = running_dir / "logs"
-    config_dir = running_dir / "CONFIGS"
-    
-    logger = setup_logging(logs_dir)
-    
-    print("=" * 40)
-    print(f"Pure Python Demo")
-    print(f"{session_id} (PID: {os.getpid()})")
-    print(f"\n{script_path}")
-    print(f"\nArguments:")
-    print(f"    filename: {args.filename}")
-    print(f"    verbose: {args.verbose}")
-    print("=" * 40)
-    
-    config_dir.mkdir(parents=True, exist_ok=True)
-    config_data = {
-        'ID': session_id,
-        'FILE': str(script_path),
-        'SDIR_OUT': str(output_base),
-        'SDIR_RUN': str(running_dir),
-        'PID': os.getpid(),
-        'ARGS': vars(args)
-    }
-    (config_dir / "CONFIG.json").write_text(json.dumps(config_data, indent=2))
-    
-    try:
-        result = demo(output_base, args.filename, args.verbose, logger)
-        success_dir = output_base / "FINISHED_SUCCESS" / session_id
-        success_dir.parent.mkdir(parents=True, exist_ok=True)
-        shutil.move(str(running_dir), str(success_dir))
-        logger.info(f"\n✅ Script completed: {success_dir}")
-        return result
-    except Exception as e:
-        error_dir = output_base / "FINISHED_ERROR" / session_id
-        error_dir.parent.mkdir(parents=True, exist_ok=True)
-        shutil.move(str(running_dir), str(error_dir))
-        logger.error(f"\n❌ Error: {e}", exc_info=True)
-        raise
-
-
-if __name__ == "__main__":
-    sys.exit(main())
-```
-
-</details>
-
-### What You Get With `@stx.session`
-
-Both implementations produce **identical outputs**, but SciTeX eliminates 131 lines of boilerplate:
-```bash
-demo_session_plt_io_out/
-├── demo.csv              # Auto-extracted plot data
-├── demo.jpg              # With embedded metadata
-└── FINISHED_SUCCESS/
-    └── 2025Y-11M-18D-09h12m03s_HmH5-main/
-        ├── CONFIGS/
-        │   ├── CONFIG.pkl    # Python object
-        │   └── CONFIG.yaml   # Human-readable
-        └── logs/
-            ├── stderr.log
-            └── stdout.log
-```
-
-**What SciTeX Automates:**
-- ✅ Session ID generation and tracking
-- ✅ Output directory management (`RUNNING/` → `FINISHED_SUCCESS/`)
-- ✅ Argument parsing with auto-generated help
-- ✅ Logging to files and console
-- ✅ Config serialization (YAML + pickle)
-- ✅ CSV export from matplotlib plots
-- ✅ Metadata embedding in images
-- ✅ Symlink management for centralized outputs
-- ✅ Error handling and directory cleanup
-- ✅ Global variable injection (CONFIG, plt, COLORS, logger, rng_manager)
-
-**Research Benefits:**
-- 📊 **Figures + data always together** - CSV auto-exported from every plot
-- 🔄 **Perfect reproducibility** - Every run tracked with unique session ID
-- 🌍 **Universal format** - CSV data readable anywhere
-- 📝 **Zero manual work** - Metadata embedded automatically
-- 🎯 **3.3× less code** - Focus on research, not infrastructure
-
-## 🤝 Contributing
-
-We welcome contributions! Please see our [Contributing Guide](CONTRIBUTING.md) for details.
-
-
-## 📄 License
-
-AGPL-3.0.
-
-## 📧 Contact
-
-Yusuke Watanabe (ywatanabe@scitex.ai)
-
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