scitex 2.10.2__py3-none-any.whl → 2.11.0__py3-none-any.whl

scitex/fig/editor/flask_editor/static/css/features/canvas.css

@@ -1,176 +0,0 @@
-/* =============================================================================
- * Unified Panel Canvas (matches figz export layout)
- * Exactly matches SciTeX Cloud's .plot-preview-area styling
- * ============================================================================= */
-.panel-canvas {
-    position: relative;
-    min-height: 400px;
-    /* White background with grid pattern - exact match to SciTeX Cloud */
-    background: #ffffff;
-    background-image:
-        linear-gradient(0deg, transparent 23px, #e5e5e5 23px),
-        linear-gradient(90deg, transparent 23px, #e5e5e5 23px);
-    background-size: 24px 24px;
-    border-radius: 8px;
-    overflow: visible;  /* Allow panels to extend slightly if needed */
-}
-
-/* Dark mode: dark canvas background for eye comfort */
-[data-theme="dark"] .panel-canvas,
-.dark-mode .panel-canvas {
-    background: #1a1a1a;
-    background-image:
-        linear-gradient(0deg, transparent 23px, #2a2a2a 23px),
-        linear-gradient(90deg, transparent 23px, #2a2a2a 23px);
-    background-size: 24px 24px;
-}
-
-/* Hide grid when toggled off (G key) */
-.panel-canvas.hide-grid {
-    background-image: none !important;
-}
-
-/* Unified canvas - panels appear as single figure matching figz export */
-.panel-canvas-item {
-    position: absolute;
-    user-select: none;
-    background: transparent;
-    overflow: visible;
-    border: none;
-    cursor: grab;  /* Indicate draggability */
-}
-
-.panel-canvas-item:hover {
-    z-index: 10;
-}
-
-.panel-canvas-item:active {
-    cursor: grabbing;
-}
-
-.panel-canvas-item.active {
-    outline: 2px solid var(--status-success);
-    outline-offset: 2px;
-}
-
-.panel-canvas-item .panel-card-container {
-    width: 100%;
-    height: 100%;
-    position: relative;
-}
-
-.panel-canvas-item img {
-    width: 100%;
-    height: 100%;
-    object-fit: contain;  /* Preserve aspect ratio - never distort figures */
-    pointer-events: none;
-    display: block;
-}
-
-/* Dark mode: invert plot colors for visibility */
-[data-theme="dark"] .panel-canvas-item img,
-[data-theme="dark"] .panel-card img,
-[data-theme="dark"] .preview-wrapper img {
-    filter: invert(0.88) hue-rotate(180deg);
-}
-
-.panel-canvas-label {
-    position: absolute;
-    top: 4px;
-    left: 4px;
-    background: rgba(0,0,0,0.6);
-    color: white;
-    padding: 2px 6px;
-    border-radius: 3px;
-    font-size: 0.65em;
-    font-weight: 600;
-    cursor: move;
-    opacity: 1;  /* Show by default */
-    transition: opacity 0.2s, background 0.2s;
-    z-index: 5;
-}
-
-.panel-canvas-item:hover .panel-canvas-label {
-    opacity: 1;
-    background: rgba(0,0,0,0.8);  /* Slightly darker on hover */
-}
-
-/* Drag handle for panel repositioning */
-.panel-drag-handle {
-    position: absolute;
-    top: 4px;
-    right: 4px;
-    background: rgba(0,0,0,0.5);
-    color: white;
-    padding: 2px 4px;
-    border-radius: 3px;
-    font-size: 0.7em;
-    cursor: move;
-    opacity: 0;
-    transition: opacity 0.2s, background 0.2s;
-    z-index: 5;
-    user-select: none;
-}
-
-.panel-canvas-item:hover .panel-drag-handle {
-    opacity: 1;
-}
-
-.panel-drag-handle:hover {
-    background: rgba(0,0,0,0.8);
-}
-
-.panel-drag-handle:active {
-    background: var(--accent-primary);
-}
-
-/* Position indicator while dragging */
-.panel-position-indicator {
-    position: absolute;
-    bottom: 4px;
-    left: 4px;
-    background: rgba(0,0,0,0.7);
-    color: #4fc3f7;
-    padding: 2px 6px;
-    border-radius: 3px;
-    font-size: 0.6em;
-    font-family: monospace;
-    pointer-events: none;
-    opacity: 0;
-    transition: opacity 0.3s;
-    z-index: 5;
-}
-
-/* Dragging state */
-.panel-canvas-item.dragging {
-    opacity: 0.85;
-    z-index: 100;
-    box-shadow: 0 8px 24px rgba(0,0,0,0.3);
-    outline: 2px dashed var(--accent-primary);
-    outline-offset: 2px;
-    cursor: grabbing;
-}
-
-.panel-canvas-item.dragging .panel-position-indicator {
-    opacity: 1;
-}
-
-.canvas-controls {
-    display: flex;
-    gap: 8px;
-    margin-bottom: 8px;
-    align-items: center;
-}
-
-.canvas-controls button {
-    padding: 4px 12px;
-    font-size: 0.8em;
-}
-
-/* Toolbar separator */
-.toolbar-separator {
-    width: 1px;
-    height: 24px;
-    background: #555;
-    margin: 0 4px;
-}

scitex/fts/README.md

@@ -1,262 +0,0 @@
-<!-- ---
-!-- Timestamp: 2025-12-20 07:20:45
-!-- Author: ywatanabe
-!-- File: /home/ywatanabe/proj/scitex-code/src/scitex/fsb/README.md
-!-- --- -->
-
-# SciTeX FTS (Figure-Table-Statistics)
-
-**FTS is the single source of truth for bundle schemas in SciTeX.**
-
-FTS defines a standardized, self-contained format for reproducible scientific figures with:
-- Complete data provenance
-- Statistical analysis results
-- Visual encoding specifications
-- Theme/aesthetic configuration
-
-## Design Philosophy
-
-### Separation of Concerns
-
-FTS strictly separates:
-
-| Layer | File | Purpose | Affects Science? |
-|-------|------|---------|------------------|
-| **Node** | `spec.json` | Structure (id, type, bbox, children) | Yes |
-| **Encoding** | `encoding.json` | Data-to-Visual mapping (columns, scales) | Yes |
-| **Theme** | `theme.json` | Aesthetics (colors, fonts, lines) | No |
-| **Stats** | `stats.json` | Statistical results with provenance | Yes |
-| **Data Info** | `data_info.json` | Column metadata, units, data source | Yes |
-
-**Key insight**: Theme changes don't affect reproducibility. Encoding changes do.
-
-### Canonical vs Artifacts
-
-```
-bundle_root/
-├── canonical/           # Source of truth (editable, human-readable)
-│   ├── spec.json        # Main specification
-│   ├── data.csv         # Source data
-│   ├── encoding.json    # Data-to-visual mappings
-│   ├── theme.json       # Visual aesthetics
-│   ├── stats.json       # Statistical results
-│   ├── data_info.json   # Column metadata
-│   └── runtime.json     # Runtime configuration
-├── artifacts/           # Derived/cached (can be deleted and regenerated)
-│   ├── cache/
-│   │   ├── geometry_px.json
-│   │   └── render_manifest.json
-│   └── exports/
-│       ├── figure.svg
-│       ├── figure.png
-│       └── figure.pdf
-└── children/            # Child bundles (for multi-panel figures)
-    ├── panel_a/
-    └── panel_b/
-```
-
-## Quick Start
-
-```python
-from scitex import fts
-
-# Create a new bundle
-bundle = fts.FTS("my_plot.zip", create=True, node_type="plot", name="My Plot")
-
-# Set encoding (data-to-visual mapping)
-bundle.encoding = {
-    "traces": [
-        {
-            "trace_id": "main",
-            "data_ref": "data/experiment.csv",
-            "x": {"column": "time", "scale": "linear"},
-            "y": {"column": "amplitude", "scale": "log"},
-            "color": {"column": "condition"},
-        }
-    ]
-}
-
-# Set theme (pure aesthetics)
-bundle.theme = {
-    "colors": {"palette": ["#1f77b4", "#ff7f0e", "#2ca02c"]},
-    "typography": {"family": "Arial", "size_pt": 10},
-    "lines": {"width_pt": 1.5},
-}
-
-# Save
-bundle.save()
-```
-
-## Module Structure
-
-```
-scitex/fts/
-├── __init__.py       # Public API exports
-├── _bundle.py        # FTS class
-├── _models.py        # Core models (Node, BBox, SizeMM, Axes)
-├── _encoding.py      # Encoding models (TraceEncoding, ChannelEncoding)
-├── _theme.py         # Theme models (Theme, Colors, Typography)
-├── _stats.py         # Stats models (Analysis, StatResult, EffectSize)
-├── _data_info.py     # Data info models (DataInfo, ColumnDef)
-├── _validation.py    # JSON schema validation
-├── _conversion.py    # scitex to FTS format conversion
-└── schemas/          # JSON Schema definitions
-    ├── node.schema.json
-    ├── encoding.schema.json
-    ├── theme.schema.json
-    ├── stats.schema.json
-    └── data_info.schema.json
-```
-
-## Core Models
-
-### Node (spec.json)
-
-Structural metadata for the bundle:
-
-```python
-from scitex.fts import Node, BBox, SizeMM
-
-node = Node(
-    id="plot_001",
-    type="plot",  # figure, plot, text, shape, image
-    name="Figure 1A",
-    bbox_norm=BBox(x0=0, y0=0, x1=1, y1=1),
-    size_mm=SizeMM(width=85, height=60),  # Single column
-    children=["panel_a", "panel_b"],  # For figures
-)
-```
-
-### Encoding (encoding.json)
-
-Data-to-visual channel mappings:
-
-```python
-from scitex.fts import Encoding, TraceEncoding, ChannelEncoding
-
-encoding = Encoding(
-    traces=[
-        TraceEncoding(
-            trace_id="line_1",
-            data_ref="data/timeseries.csv",
-            x=ChannelEncoding(column="time_ms", scale="linear"),
-            y=ChannelEncoding(column="voltage_mV", scale="linear"),
-            color=ChannelEncoding(column="channel", scale="categorical"),
-        )
-    ]
-)
-```
-
-### Theme (theme.json)
-
-Pure aesthetics (doesn't affect scientific meaning):
-
-```python
-from scitex.fts import Theme, Colors, Typography
-
-theme = Theme(
-    colors=Colors(
-        palette=["#1f77b4", "#ff7f0e", "#2ca02c"],
-        background="#ffffff",
-        text="#000000",
-    ),
-    typography=Typography(
-        family="Arial",
-        size_pt=8,
-        title_size_pt=10,
-    ),
-    preset="nature",  # Named presets: nature, science, dark
-)
-```
-
-### Stats (stats/stats.json)
-
-Statistical analysis results with full provenance:
-
-```python
-from scitex.fts import Stats, Analysis, StatMethod, StatResult, EffectSize
-
-stats = Stats(
-    analyses=[
-        Analysis(
-            result_id="ttest_1",
-            method=StatMethod(
-                name="t-test",
-                variant="independent",
-                parameters={"equal_var": False},
-            ),
-            inputs={
-                "groups": ["control", "treatment"],
-                "n_per_group": [30, 28],
-            },
-            results=StatResult(
-                statistic=2.45,
-                statistic_name="t",
-                p_value=0.018,
-                df=56,
-                effect_size=EffectSize(
-                    name="cohens_d",
-                    value=0.65,
-                    ci_lower=0.12,
-                    ci_upper=1.18,
-                ),
-            ),
-        )
-    ],
-    software={"python": "3.11", "scipy": "1.11.0"},
-)
-```
-
-## Validation
-
-Validate bundles against JSON schemas:
-
-```python
-from scitex.fts import validate_bundle, validate_node
-
-# Validate entire bundle
-errors = validate_bundle("my_figure.zip")
-if errors:
-    for filename, error_list in errors.items():
-        print(f"{filename}: {error_list}")
-
-# Validate individual components
-node_errors = validate_node({"id": "test", "type": "plot", "bbox_norm": {...}})
-```
-
-## Conversion Utilities
-
-Convert between scitex internal format and FTS format:
-
-```python
-from scitex.fts import from_scitex_spec, to_scitex_spec
-
-# scitex spec to FTS format
-fts_data = from_scitex_spec(spec_dict, style_dict)
-# Returns: {"node": {...}, "encoding": {...}, "theme": {...}}
-
-# FTS bundle to scitex format
-spec, style = to_scitex_spec(bundle)
-```
-
-## Backward Compatibility
-
-FTS is also available via the legacy import path:
-
-```python
-# Old path (still works)
-from scitex import fsb  # Alias for fts
-
-# New path (preferred)
-from scitex import fts
-```
-
-## Best Practices
-
-1. **Always specify units in data_info.json** - Critical for reproducibility
-2. **Use encoding for data-driven styling** - Color by condition, size by value
-3. **Keep theme separate from encoding** - Enables style changes without data loss
-4. **Include stats provenance** - Software versions, parameters, correction methods
-5. **Use canonical/ for source files** - artifacts/ can be regenerated
-
-<!-- EOF -->

scitex/fts/TODO.md

@@ -1,66 +0,0 @@
-<!-- ---
-!-- Timestamp: 2025-12-21 11:02:24
-!-- Author: ywatanabe
-!-- File: /home/ywatanabe/proj/scitex-code/src/scitex/fts/TODO.md
-!-- --- -->
-
-## Simplify Things
-## Explict Names
-## Kinds
-### figure
-### plot
-
-#### Current
-```
-├── artifacts
-│   ├── cache
-│   │   ├── geometry_px.json
-│   │   ├── hitmap.png
-│   │   ├── hitmap.svg
-│   │   └── render_manifest.json
-│   └── exports
-│       ├── figure.pdf
-│       ├── figure.png
-│       └── figure.svg
-├── canonical
-│   ├── data_info.json
-│   ├── encoding.json
-│   ├── spec.json
-│   └── theme.json
-├── children
-└── payload
-    └── data.csv
-
-```
-
-#### Revised
-```
-├── artifacts
-│   ├── cache
-│   │   ├── coordinates/
-    
-│   │   ├── hitmap.png
-│   │   ├── hitmap.svg
-│   │   └── render_manifest.json
-│   └── exports
-│       ├── figure.pdf
-│       ├── figure.png
-│       └── figure.svg
-├── canonical
-│   ├── data_info.json
-│   ├── encoding.json
-│   ├── spec.json
-│   └── theme.json
-├── children
-└── payload
-    └── data.csv
-
-```
-
-### image
-### shape
-### stats
-### table
-### text
-
-<!-- EOF -->

scitex/fts/__init__.py

@@ -1,90 +0,0 @@
-#!/usr/bin/env python3
-# Timestamp: 2025-12-20
-# File: /home/ywatanabe/proj/scitex-code/src/scitex/fts/__init__.py
-
-"""
-SciTeX FTS (Figure-Table-Statistics) - The single source of truth for bundle schemas.
-
-FTS defines a standardized format for reproducible scientific figures and tables:
-- Self-contained bundles with data, visualization spec, and stats
-- Clear separation: Node (structure), Encoding (data mapping), Theme (aesthetics)
-- Full provenance tracking for scientific reproducibility
-
-Usage:
-    from scitex.fts import FTS, Node, Encoding, Theme
-
-    # Create new bundle
-    bundle = FTS("my_plot.zip", create=True, node_type="plot")
-    bundle.encoding = {"traces": [{"trace_id": "t1", "x": {"column": "time"}}]}
-    bundle.save()
-
-    # Load existing bundle
-    bundle = FTS("my_plot.zip")
-    print(bundle.node.type)  # "plot"
-"""
-
-# Version
-__version__ = "1.0.0"
-
-# =============================================================================
-# Public API - What users need
-# =============================================================================
-
-# FTS class (main entry point)
-from ._bundle import FTS, create_bundle, from_matplotlib, load_bundle
-
-# Core dataclasses users interact with
-from ._bundle import Node, BBox, SizeMM, DataInfo
-from ._fig import Encoding, Theme
-from ._stats import Stats
-
-# Type enumeration
-from ._bundle import NodeType
-
-# Error classes for exception handling
-from ._bundle import (
-    BundleError,
-    BundleNotFoundError,
-    BundleValidationError,
-)
-
-# Availability flags
-FTS_AVAILABLE = True
-FTS_VERSION = __version__
-
-# Legacy aliases for backwards compatibility
-FSB = FTS
-FSB_AVAILABLE = FTS_AVAILABLE
-FSB_VERSION = FTS_VERSION
-
-__all__ = [
-    # Version
-    "__version__",
-    "FTS_AVAILABLE",
-    "FTS_VERSION",
-    # Legacy aliases
-    "FSB_AVAILABLE",
-    "FSB_VERSION",
-    "FSB",
-    # FTS class
-    "FTS",
-    "load_bundle",
-    "create_bundle",
-    "from_matplotlib",
-    # Core dataclasses
-    "Node",
-    "Encoding",
-    "Theme",
-    "Stats",
-    "BBox",
-    "SizeMM",
-    "DataInfo",
-    # Types
-    "NodeType",
-    # Errors
-    "BundleError",
-    "BundleNotFoundError",
-    "BundleValidationError",
-]
-
-# EOF

scitex/fts/_bundle/README_IN_BUNDLE.md

@@ -1,102 +0,0 @@
-# FTS Bundle (Figure-Table-Statistics)
-
-This is a self-contained scientific figure bundle created with SciTeX.
-
-## Bundle Structure
-
-```
-bundle_root/
-├── README.md            # This file
-├── canonical/           # Source of truth (editable)
-│   ├── spec.json        # Main specification (type, id, elements)
-│   ├── data.csv         # Source data
-│   ├── encoding.json    # Data-to-visual channel mappings
-│   ├── theme.json       # Visual aesthetics (colors, fonts)
-│   ├── stats.json       # Statistical analysis results
-│   ├── data_info.json   # Column metadata and units
-│   └── runtime.json     # Runtime configuration
-├── artifacts/           # Derived files (can be regenerated)
-│   ├── cache/           # Computed values
-│   └── exports/         # Rendered outputs (PNG, SVG, PDF)
-└── children/            # Child bundles (for multi-panel figures)
-```
-
-## Key Files
-
-### canonical/spec.json
-Main specification defining the bundle structure:
-- `id`: Unique bundle identifier
-- `type`: Bundle type (figure, plot, text, etc.)
-- `bbox_norm`: Normalized bounding box (0-1 coordinates)
-- `size_mm`: Physical size in millimeters
-- `elements`: Child elements or references
-
-### canonical/encoding.json
-Data-to-visual mappings for scientific reproducibility:
-- `traces`: List of data series with column bindings
-- Each trace maps data columns to visual channels (x, y, color, size)
-
-### canonical/theme.json
-Pure visual aesthetics (can be changed without affecting data):
-- `colors`: Color palette and scheme
-- `typography`: Font settings
-- `lines`: Line styles and widths
-- `markers`: Marker styles
-
-### canonical/stats.json
-Statistical analysis results with full provenance:
-- `analyses`: List of statistical tests performed
-- Each analysis includes method, inputs, and results
-- `software`: Version information for reproducibility
-
-### canonical/data_info.json
-Metadata about data columns:
-- Column names, types, and units
-- Data source and hash for integrity
-- Basic statistics for validation
-
-## Opening This Bundle
-
-### With Python (SciTeX)
-```python
-from scitex import fsb
-
-# Load the bundle
-bundle = fsb.Bundle("path/to/this/bundle.zip")
-
-# Access components
-print(bundle.node.name)
-print(bundle.encoding)
-print(bundle.theme)
-```
-
-### With Any JSON Tool
-All files in `canonical/` are standard JSON and can be viewed/edited with any text editor or JSON tool.
-
-### Exported Figures
-Ready-to-use figures are in `artifacts/exports/`:
-- `figure.svg` - Vector format (scalable)
-- `figure.png` - Raster format (web/screen)
-- `figure.pdf` - Print format
-
-## Reproducibility
-
-This bundle contains everything needed to reproduce the figure:
-1. **Data**: Original data in `canonical/data.csv`
-2. **Encoding**: How data maps to visuals in `encoding.json`
-3. **Stats**: Statistical results with full provenance
-4. **Software**: Version info in `stats.json`
-
-To regenerate exports:
-```python
-from scitex import fsb
-bundle = fsb.Bundle("this_bundle.zip")
-# Exports will be regenerated on render
-```
-
-## License
-
-The figure and data in this bundle are subject to the license terms specified by the original author. Contact information may be found in `spec.json`.
-
----
-*Created with [SciTeX](https://scitex.ai) FTS v1.0.0*