scitex 2.1.3__py3-none-any.whl → 2.4.0__py3-none-any.whl

scitex/stats/tests/normality/_test_ks.py

@@ -1,702 +0,0 @@
-#!/usr/bin/env python3
-# -*- coding: utf-8 -*-
-# Timestamp: "2025-10-01 17:30:00 (ywatanabe)"
-# File: /home/ywatanabe/proj/scitex_repo/src/scitex/stats/tests/normality/_test_ks.py
-# ----------------------------------------
-from __future__ import annotations
-import os
-__FILE__ = __file__
-__DIR__ = os.path.dirname(__FILE__)
-# ----------------------------------------
-
-
-"""
-Functionalities:
-  - Perform Kolmogorov-Smirnov test for distribution comparison
-  - One-sample KS test (compare to reference distribution)
-  - Two-sample KS test (compare two empirical distributions)
-  - Generate CDF comparison plots
-  - Support flexible output formats (dict or DataFrame)
-
-Dependencies:
-  - packages: numpy, pandas, scipy, matplotlib
-
-IO:
-  - input: One or two samples (arrays or Series)
-  - output: Test results (dict or DataFrame) and optional figure
-"""
-
-"""Imports"""
-import sys
-import argparse
-import numpy as np
-import pandas as pd
-from typing import Union, Optional, Literal
-from scipy import stats
-import matplotlib.pyplot as plt
-import matplotlib.axes
-import scitex as stx
-from scitex.logging import getLogger
-
-logger = getLogger(__name__)
-
-"""Functions"""
-def test_ks_1samp(
-    x: Union[np.ndarray, pd.Series],
-    cdf: Union[str, callable] = 'norm',
-    args: tuple = (),
-    var_x: str = 'x',
-    alternative: Literal['two-sided', 'less', 'greater'] = 'two-sided',
-    alpha: float = 0.05,
-    plot: bool = False,
-    ax: Optional[matplotlib.axes.Axes] = None,
-    return_as: Literal['dict', 'dataframe'] = 'dict',
-    decimals: int = 3,
-    verbose: bool = False
-) -> Union[dict, pd.DataFrame]:
-    """
-    Perform one-sample Kolmogorov-Smirnov test.
-
-    Parameters
-    ----------
-    x : array or Series
-        Sample to test
-    cdf : str or callable, default 'norm'
-        Reference distribution. Either:
-        - String: 'norm', 'uniform', 'expon', etc. (scipy.stats distribution name)
-        - Callable: CDF function
-    args : tuple, default ()
-        Distribution parameters (e.g., (loc, scale) for normal)
-    var_x : str, default 'x'
-        Label for sample
-    alternative : {'two-sided', 'less', 'greater'}, default 'two-sided'
-        Alternative hypothesis
-    alpha : float, default 0.05
-        Significance level
-    plot : bool, default False
-        Whether to generate CDF comparison plot
-    return_as : {'dict', 'dataframe'}, default 'dict'
-        Output format
-    decimals : int, default 3
-        Number of decimal places for rounding
-
-    Returns
-    -------
-    results : dict or DataFrame
-        Test results including:
-        - test_method: 'Kolmogorov-Smirnov test (1-sample)'
-        - statistic_name: 'D'
-        - statistic: KS D-statistic (maximum CDF difference)
-        - pvalue: p-value
-        - pstars: Significance stars
-        - rejected: Whether null hypothesis is rejected
-        - n_x: Sample size
-        - var_x: Variable label
-        - reference_distribution: Name of reference distribution
-        - H0: Null hypothesis description
-    fig : matplotlib.figure.Figure, optional
-        Figure with CDF comparison (only if plot=True)
-
-    Notes
-    -----
-    The one-sample Kolmogorov-Smirnov test compares the empirical cumulative
-    distribution function (ECDF) of the sample against a reference CDF.
-
-    **Null Hypothesis (H0)**: Data follow the specified distribution
-
-    **Test Statistic D**:
-
-    .. math::
-        D = \\sup_x |F_n(x) - F(x)|
-
-    Where:
-    - F_n(x): Empirical CDF of sample
-    - F(x): Reference CDF
-
-    **Advantages**:
-    - Distribution-free (no assumptions about data)
-    - Can test against any continuous distribution
-    - More general than Shapiro-Wilk (not limited to normality)
-
-    **Disadvantages**:
-    - Less powerful than Shapiro-Wilk for normality testing
-    - Sensitive to sample size (large n → high power, may detect trivial deviations)
-    - Assumes continuous distribution (not suitable for discrete data)
-
-    **When to use**:
-    - Testing goodness-of-fit to any continuous distribution
-    - Comparing sample to theoretical distribution
-    - When Shapiro-Wilk is not applicable (non-normal distributions)
-    - Large sample sizes (n > 50)
-
-    References
-    ----------
-    .. [1] Kolmogorov, A. (1933). "Sulla determinazione empirica di una legge
-           di distribuzione". Giornale dell'Istituto Italiano degli Attuari, 4, 83-91.
-    .. [2] Smirnov, N. (1948). "Table for estimating the goodness of fit of
-           empirical distributions". Annals of Mathematical Statistics, 19(2), 279-281.
-
-    Examples
-    --------
-    >>> # Test if data are normally distributed
-    >>> x = np.random.normal(0, 1, 100)
-    >>> result = test_ks_1samp(x, cdf='norm', args=(0, 1))
-    >>> result['rejected']
-    False
-
-    >>> # Test if data are uniformly distributed
-    >>> x = np.random.uniform(0, 1, 100)
-    >>> result = test_ks_1samp(x, cdf='uniform', args=(0, 1))
-    """
-    from ...utils._formatters import p2stars
-    from ...utils._normalizers import force_dataframe, convert_results
-
-    # Convert to numpy array and remove NaN
-    x = np.asarray(x)
-    x = x[~np.isnan(x)]
-    n_x = len(x)
-
-    # Check sample size
-    if n_x < 3:
-        raise ValueError("KS test requires at least 3 observations")
-
-    # Get reference distribution
-    if isinstance(cdf, str):
-        ref_dist_name = cdf
-        # Get scipy distribution
-        ref_dist = getattr(stats, cdf)
-        if args:
-            cdf_func = lambda t: ref_dist.cdf(t, *args)
-        else:
-            cdf_func = ref_dist.cdf
-    else:
-        ref_dist_name = 'custom'
-        cdf_func = cdf
-
-    # Perform KS test
-    ks_result = stats.ks_1samp(x, cdf_func, alternative=alternative)
-    d_stat = float(ks_result.statistic)
-    pvalue = float(ks_result.pvalue)
-
-    # Determine if distribution matches
-    rejected = pvalue < alpha
-    matches = not rejected
-
-    # Compile results
-    result = {
-        'test_method': 'Kolmogorov-Smirnov test (1-sample)',
-        'statistic': round(d_stat, decimals),
-        'n': n_x,
-        'var_x': var_x,
-        'pvalue': round(pvalue, decimals),
-        'stars': p2stars(pvalue),
-        'alpha': alpha,
-        'significant': rejected,
-        'matches_distribution': matches,
-        'reference_distribution': ref_dist_name,
-        'H0': f'Data follow {ref_dist_name} distribution',
-    }
-
-    # Log results if verbose
-    if verbose:
-        logger.info(f"KS test (1-sample): D = {d_stat:.3f}, p = {pvalue:.4f} {p2stars(pvalue)}")
-        logger.info(f"Matches {ref_dist_name}: {matches}")
-
-    # Auto-enable plotting if ax is provided
-    if ax is not None:
-        plot = True
-
-    # Generate plot if requested
-    if plot:
-        if ax is None:
-            fig, axes = stx.plt.subplots(1, 2, figsize=(14, 6))
-            _plot_ks_1samp_full(x, cdf_func, var_x, result, ref_dist_name, axes)
-        else:
-            _plot_ks_1samp_simple(x, cdf_func, var_x, result, ref_dist_name, ax)
-
-    # Convert to requested format
-    if return_as == 'dataframe':
-        result = force_dataframe(result)
-    elif return_as not in ['dict', 'dataframe']:
-        return convert_results(result, return_as=return_as)
-
-    return result
-
-
-def test_ks_2samp(
-    x: Union[np.ndarray, pd.Series],
-    y: Union[np.ndarray, pd.Series],
-    var_x: str = 'x',
-    var_y: str = 'y',
-    alternative: Literal['two-sided', 'less', 'greater'] = 'two-sided',
-    alpha: float = 0.05,
-    plot: bool = False,
-    ax: Optional[matplotlib.axes.Axes] = None,
-    return_as: Literal['dict', 'dataframe'] = 'dict',
-    decimals: int = 3,
-    verbose: bool = False
-) -> Union[dict, pd.DataFrame]:
-    """
-    Perform two-sample Kolmogorov-Smirnov test.
-
-    Parameters
-    ----------
-    x, y : arrays or Series
-        Two samples to compare
-    var_x, var_y : str
-        Labels for samples
-    alternative : {'two-sided', 'less', 'greater'}, default 'two-sided'
-        Alternative hypothesis
-    alpha : float, default 0.05
-        Significance level
-    plot : bool, default False
-        Whether to generate CDF comparison plot
-    return_as : {'dict', 'dataframe'}, default 'dict'
-        Output format
-    decimals : int, default 3
-        Number of decimal places for rounding
-
-    Returns
-    -------
-    results : dict or DataFrame
-        Test results including:
-        - test_method: 'Kolmogorov-Smirnov test (2-sample)'
-        - statistic_name: 'D'
-        - statistic: KS D-statistic
-        - pvalue: p-value
-        - pstars: Significance stars
-        - rejected: Whether null hypothesis is rejected
-        - n_x, n_y: Sample sizes
-        - var_x, var_y: Variable labels
-        - H0: Null hypothesis description
-    fig : matplotlib.figure.Figure, optional
-        Figure with CDF comparison (only if plot=True)
-
-    Notes
-    -----
-    The two-sample Kolmogorov-Smirnov test compares the ECDFs of two samples.
-
-    **Null Hypothesis (H0)**: Both samples come from the same distribution
-
-    **Test Statistic D**:
-
-    .. math::
-        D = \\sup_x |F_{n_1}(x) - F_{n_2}(x)|
-
-    Where F_{n_1} and F_{n_2} are the empirical CDFs.
-
-    **Advantages**:
-    - Distribution-free (non-parametric)
-    - Tests entire distribution, not just location
-    - Can detect differences in location, scale, or shape
-
-    **Disadvantages**:
-    - Less powerful than t-test when assumptions are met
-    - Most sensitive to differences near the center of distributions
-    - Less sensitive to tail differences
-
-    **When to use**:
-    - Comparing two independent samples
-    - No assumptions about distribution shape
-    - Want to test overall distribution equality (not just means)
-    - Alternative to t-test when normality violated
-
-    **Comparison with other tests**:
-    - vs t-test: More robust, less powerful
-    - vs Mann-Whitney U: Tests different hypotheses (distribution vs median)
-    - vs Brunner-Munzel: KS tests full distribution, BM tests P(X>Y)
-
-    Examples
-    --------
-    >>> # Two samples from same distribution
-    >>> x = np.random.normal(0, 1, 100)
-    >>> y = np.random.normal(0, 1, 100)
-    >>> result = test_ks_2samp(x, y)
-    >>> result['rejected']
-    False
-
-    >>> # Two samples from different distributions
-    >>> x = np.random.normal(0, 1, 100)
-    >>> y = np.random.normal(2, 1, 100)
-    >>> result = test_ks_2samp(x, y)
-    >>> result['rejected']
-    True
-    """
-    from ...utils._formatters import p2stars
-    from ...utils._normalizers import force_dataframe, convert_results
-
-    # Convert to numpy arrays and remove NaN
-    x = np.asarray(x)
-    y = np.asarray(y)
-    x = x[~np.isnan(x)]
-    y = y[~np.isnan(y)]
-
-    n_x = len(x)
-    n_y = len(y)
-
-    # Perform two-sample KS test
-    ks_result = stats.ks_2samp(x, y, alternative=alternative)
-    d_stat = float(ks_result.statistic)
-    pvalue = float(ks_result.pvalue)
-
-    # Determine rejection
-    rejected = pvalue < alpha
-
-    # Compile results
-    result = {
-        'test_method': 'Kolmogorov-Smirnov test (2-sample)',
-        'statistic': round(d_stat, decimals),
-        'n_x': n_x,
-        'n_y': n_y,
-        'var_x': var_x,
-        'var_y': var_y,
-        'pvalue': round(pvalue, decimals),
-        'stars': p2stars(pvalue),
-        'alpha': alpha,
-        'significant': rejected,
-        'same_distribution': not rejected,
-        'H0': 'Both samples come from the same distribution',
-    }
-
-    # Log results if verbose
-    if verbose:
-        logger.info(f"KS test (2-sample): D = {d_stat:.3f}, p = {pvalue:.4f} {p2stars(pvalue)}")
-        logger.info(f"Same distribution: {not rejected}")
-
-    # Auto-enable plotting if ax is provided
-    if ax is not None:
-        plot = True
-
-    # Generate plot if requested
-    if plot:
-        if ax is None:
-            fig, axes = stx.plt.subplots(1, 2, figsize=(14, 6))
-            _plot_ks_2samp_full(x, y, var_x, var_y, result, axes)
-        else:
-            _plot_ks_2samp_simple(x, y, var_x, var_y, result, ax)
-
-    # Convert to requested format
-    if return_as == 'dataframe':
-        result = force_dataframe(result)
-    elif return_as not in ['dict', 'dataframe']:
-        return convert_results(result, return_as=return_as)
-
-    return result
-
-
-def _plot_ks_1samp_full(x, cdf_func, var_x, result, ref_dist_name, axes):
-    """Create 2-panel CDF comparison plot for one-sample KS test."""
-    # Plot 1: CDF comparison
-    ax = axes[0]
-
-    # Compute ECDF
-    x_sorted = np.sort(x)
-    ecdf = np.arange(1, len(x) + 1) / len(x)
-
-    # Compute reference CDF
-    ref_cdf = cdf_func(x_sorted)
-
-    # Plot both CDFs
-    ax.step(x_sorted, ecdf, where='post', linewidth=2, label=f'Empirical ({var_x})', color='blue')
-    ax.plot(x_sorted, ref_cdf, linewidth=2, label=f'Reference ({ref_dist_name})', color='red')
-
-    # Mark maximum difference
-    diff = np.abs(ecdf - ref_cdf)
-    max_idx = np.argmax(diff)
-    ax.vlines(x_sorted[max_idx], ecdf[max_idx], ref_cdf[max_idx],
-              colors='green', linestyles='dashed', linewidth=2,
-              label=f'D = {result["statistic"]:.3f}')
-
-    ax.set_xlabel('Value')
-    ax.set_ylabel('Cumulative Probability')
-    ax.set_title(f'CDF Comparison: {var_x} vs {ref_dist_name}')
-    ax.legend()
-    ax.grid(True, alpha=0.3)
-
-    # Add text with results
-    text_str = (
-        f"D = {result['statistic']:.3f}\n"
-        f"p = {result['pvalue']:.4f} {result['stars']}\n"
-        f"Matches: {result['matches_distribution']}"
-    )
-    ax.text(
-        0.98, 0.02, text_str,
-        transform=ax.transAxes,
-        verticalalignment='bottom',
-        horizontalalignment='right',
-        bbox=dict(boxstyle='round', facecolor='wheat', alpha=0.5),
-        fontsize=10
-    )
-
-    # Plot 2: Histogram with reference PDF
-    ax = axes[1]
-
-    ax.hist(x, bins='auto', density=True, alpha=0.7, edgecolor='black', label='Data')
-
-    # If reference is a known distribution, plot PDF
-    if ref_dist_name != 'custom':
-        x_range = np.linspace(np.min(x), np.max(x), 200)
-        ref_dist = getattr(stats, ref_dist_name)
-        # Try to get PDF
-        try:
-            if hasattr(ref_dist, 'pdf'):
-                pdf_vals = ref_dist.pdf(x_range)
-                ax.plot(x_range, pdf_vals, 'r-', linewidth=2, label=f'{ref_dist_name} PDF')
-        except:
-            pass
-
-    ax.set_xlabel('Value')
-    ax.set_ylabel('Density')
-    ax.set_title(f'Distribution: {var_x}')
-    ax.legend()
-    ax.grid(True, alpha=0.3)
-
-    plt.tight_layout()
-
-
-def _plot_ks_1samp_simple(x, cdf_func, var_x, result, ref_dist_name, ax):
-    """Create single CDF comparison plot on provided axes."""
-    # Compute ECDF
-    x_sorted = np.sort(x)
-    ecdf = np.arange(1, len(x) + 1) / len(x)
-
-    # Compute reference CDF
-    ref_cdf = cdf_func(x_sorted)
-
-    # Plot both CDFs
-    ax.step(x_sorted, ecdf, where='post', linewidth=2, label=f'Empirical ({var_x})', color='blue')
-    ax.plot(x_sorted, ref_cdf, linewidth=2, label=f'Reference ({ref_dist_name})', color='red')
-
-    # Mark maximum difference
-    diff = np.abs(ecdf - ref_cdf)
-    max_idx = np.argmax(diff)
-    ax.vlines(x_sorted[max_idx], ecdf[max_idx], ref_cdf[max_idx],
-              colors='green', linestyles='dashed', linewidth=2,
-              label=f'D = {result["statistic"]:.3f}')
-
-    ax.set_xlabel('Value')
-    ax.set_ylabel('Cumulative Probability')
-    ax.set_title(f'CDF Comparison: {var_x} vs {ref_dist_name}')
-    ax.legend()
-    ax.grid(True, alpha=0.3)
-
-    # Add text with results
-    text_str = (
-        f"D = {result['statistic']:.3f}\n"
-        f"p = {result['pvalue']:.4f} {result['stars']}\n"
-        f"Matches: {result['matches_distribution']}"
-    )
-    ax.text(
-        0.98, 0.02, text_str,
-        transform=ax.transAxes,
-        verticalalignment='bottom',
-        horizontalalignment='right',
-        bbox=dict(boxstyle='round', facecolor='wheat', alpha=0.5),
-        fontsize=10
-    )
-
-
-def _plot_ks_2samp_full(x, y, var_x, var_y, result, axes):
-    """Create 2-panel CDF comparison plot for two-sample KS test."""
-    # Plot 1: CDF comparison
-    ax = axes[0]
-
-    # Compute ECDFs
-    x_sorted = np.sort(x)
-    ecdf_x = np.arange(1, len(x) + 1) / len(x)
-
-    y_sorted = np.sort(y)
-    ecdf_y = np.arange(1, len(y) + 1) / len(y)
-
-    # Plot both ECDFs
-    ax.step(x_sorted, ecdf_x, where='post', linewidth=2, label=var_x, color='blue')
-    ax.step(y_sorted, ecdf_y, where='post', linewidth=2, label=var_y, color='red')
-
-    ax.set_xlabel('Value')
-    ax.set_ylabel('Cumulative Probability')
-    ax.set_title(f'CDF Comparison: {var_x} vs {var_y}')
-    ax.legend()
-    ax.grid(True, alpha=0.3)
-
-    # Add text with results
-    text_str = (
-        f"D = {result['statistic']:.3f}\n"
-        f"p = {result['pvalue']:.4f} {result['stars']}\n"
-        f"Same dist: {result['same_distribution']}"
-    )
-    ax.text(
-        0.98, 0.02, text_str,
-        transform=ax.transAxes,
-        verticalalignment='bottom',
-        horizontalalignment='right',
-        bbox=dict(boxstyle='round', facecolor='wheat', alpha=0.5),
-        fontsize=10
-    )
-
-    # Plot 2: Overlapping histograms
-    ax = axes[1]
-
-    ax.hist(x, bins='auto', density=True, alpha=0.5, label=var_x, color='blue', edgecolor='black')
-    ax.hist(y, bins='auto', density=True, alpha=0.5, label=var_y, color='red', edgecolor='black')
-
-    ax.set_xlabel('Value')
-    ax.set_ylabel('Density')
-    ax.set_title('Distribution Comparison')
-    ax.legend()
-    ax.grid(True, alpha=0.3)
-
-    plt.tight_layout()
-
-
-def _plot_ks_2samp_simple(x, y, var_x, var_y, result, ax):
-    """Create single CDF comparison plot on provided axes."""
-    # Compute ECDFs
-    x_sorted = np.sort(x)
-    ecdf_x = np.arange(1, len(x) + 1) / len(x)
-
-    y_sorted = np.sort(y)
-    ecdf_y = np.arange(1, len(y) + 1) / len(y)
-
-    # Plot both ECDFs
-    ax.step(x_sorted, ecdf_x, where='post', linewidth=2, label=var_x, color='blue')
-    ax.step(y_sorted, ecdf_y, where='post', linewidth=2, label=var_y, color='red')
-
-    ax.set_xlabel('Value')
-    ax.set_ylabel('Cumulative Probability')
-    ax.set_title(f'CDF Comparison: {var_x} vs {var_y}')
-    ax.legend()
-    ax.grid(True, alpha=0.3)
-
-    # Add text with results
-    text_str = (
-        f"D = {result['statistic']:.3f}\n"
-        f"p = {result['pvalue']:.4f} {result['stars']}\n"
-        f"Same dist: {result['same_distribution']}"
-    )
-    ax.text(
-        0.98, 0.02, text_str,
-        transform=ax.transAxes,
-        verticalalignment='bottom',
-        horizontalalignment='right',
-        bbox=dict(boxstyle='round', facecolor='wheat', alpha=0.5),
-        fontsize=10
-    )
-
-
-"""Main function"""
-def main(args):
-    """Demonstrate Kolmogorov-Smirnov test functionality."""
-    logger.info("Demonstrating Kolmogorov-Smirnov tests")
-
-    # Set random seed
-    np.random.seed(42)
-
-    # Example 1: One-sample test - normal data
-    logger.info("\n=== Example 1: One-sample KS test (normal data) ===")
-
-    x_normal = np.random.normal(0, 1, 100)
-    result1 = test_ks_1samp(x_normal, cdf='norm', args=(0, 1), var_x='Normal data', verbose=True)
-
-    # Example 2: One-sample test - exponential data tested against normal
-    logger.info("\n=== Example 2: One-sample KS test (exponential data vs normal) ===")
-
-    x_exp = np.random.exponential(2, 100)
-    result2 = test_ks_1samp(x_exp, cdf='norm', args=(np.mean(x_exp), np.std(x_exp)),
-                            var_x='Exponential data', verbose=True)
-
-    # Example 3: One-sample test with visualization
-    logger.info("\n=== Example 3: One-sample KS test with visualization ===")
-
-    x_mixed = np.concatenate([np.random.normal(0, 1, 90), np.random.normal(3, 1, 10)])
-    result3 = test_ks_1samp(x_mixed, cdf='norm', args=(0, 1), var_x='Mixed data',
-                            plot=True, verbose=True)
-    stx.io.save(plt.gcf(), './ks_example1.jpg')
-    plt.close()
-
-    # Example 4: Two-sample test - same distribution
-    logger.info("\n=== Example 4: Two-sample KS test (same distribution) ===")
-
-    x1 = np.random.normal(0, 1, 100)
-    y1 = np.random.normal(0, 1, 100)
-
-    result4 = test_ks_2samp(x1, y1, var_x='Sample 1', var_y='Sample 2', verbose=True)
-
-    # Example 5: Two-sample test - different means
-    logger.info("\n=== Example 5: Two-sample KS test (different means) ===")
-
-    x2 = np.random.normal(0, 1, 100)
-    y2 = np.random.normal(2, 1, 100)
-
-    result5 = test_ks_2samp(x2, y2, var_x='Group A', var_y='Group B', verbose=True)
-
-    # Example 6: Two-sample test with visualization
-    logger.info("\n=== Example 6: Two-sample KS test with visualization ===")
-
-    x3 = np.random.normal(5, 1, 80)
-    y3 = np.random.exponential(2, 80)
-
-    result6 = test_ks_2samp(x3, y3, var_x='Normal', var_y='Exponential',
-                            plot=True, verbose=True)
-    stx.io.save(plt.gcf(), './ks_example2.jpg')
-    plt.close()
-
-    # Example 7: Export results
-    logger.info("\n=== Example 7: Export results ===")
-
-    from ...utils._normalizers import convert_results, force_dataframe
-
-    test_results = [result1, result2, result3, result4, result5, result6]
-
-    df = force_dataframe(test_results)
-    logger.info(f"\nDataFrame shape: {df.shape}")
-
-    convert_results(test_results, return_as='excel', path='./ks_results.xlsx')
-    logger.info("Results exported to ./ks_results.xlsx")
-
-    return 0
-
-
-def parse_args():
-    """Parse command line arguments."""
-    parser = argparse.ArgumentParser(
-        description='Demonstrate Kolmogorov-Smirnov tests'
-    )
-    parser.add_argument(
-        '--verbose',
-        action='store_true',
-        help='Enable verbose output'
-    )
-    return parser.parse_args()
-
-
-def run_main():
-    """Initialize SciTeX framework and run main."""
-    global CONFIG, sys, plt, rng
-
-    import sys
-    import matplotlib.pyplot as plt
-
-    args = parse_args()
-
-    CONFIG, sys.stdout, sys.stderr, plt, CC, rng = stx.session.start(
-        sys,
-        plt,
-        args=args,
-        file=__file__,
-        verbose=args.verbose,
-        agg=True,
-    )
-
-    exit_status = main(args)
-
-    stx.session.close(
-        CONFIG,
-        verbose=args.verbose,
-        exit_status=exit_status,
-    )
-
-
-if __name__ == '__main__':
-    run_main()
-
-# EOF