scipy 1.16.1__cp314-cp314-musllinux_1_2_x86_64.whl

scipy/signal/_czt.py

@@ -0,0 +1,575 @@
+# This program is public domain
+# Authors: Paul Kienzle, Nadav Horesh
+"""
+Chirp z-transform.
+
+We provide two interfaces to the chirp z-transform: an object interface
+which precalculates part of the transform and can be applied efficiently
+to many different data sets, and a functional interface which is applied
+only to the given data set.
+
+Transforms
+----------
+
+CZT : callable (x, axis=-1) -> array
+   Define a chirp z-transform that can be applied to different signals.
+ZoomFFT : callable (x, axis=-1) -> array
+   Define a Fourier transform on a range of frequencies.
+
+Functions
+---------
+
+czt : array
+   Compute the chirp z-transform for a signal.
+zoom_fft : array
+   Compute the Fourier transform on a range of frequencies.
+"""
+
+import cmath
+import numbers
+import numpy as np
+from numpy import pi, arange
+from scipy.fft import fft, ifft, next_fast_len
+
+__all__ = ['czt', 'zoom_fft', 'CZT', 'ZoomFFT', 'czt_points']
+
+
+def _validate_sizes(n, m):
+    if n < 1 or not isinstance(n, numbers.Integral):
+        raise ValueError('Invalid number of CZT data '
+                         f'points ({n}) specified. '
+                         'n must be positive and integer type.')
+
+    if m is None:
+        m = n
+    elif m < 1 or not isinstance(m, numbers.Integral):
+        raise ValueError('Invalid number of CZT output '
+                         f'points ({m}) specified. '
+                         'm must be positive and integer type.')
+
+    return m
+
+
+def czt_points(m, w=None, a=1+0j):
+    """
+    Return the points at which the chirp z-transform is computed.
+
+    Parameters
+    ----------
+    m : int
+        The number of points desired.
+    w : complex, optional
+        The ratio between points in each step.
+        Defaults to equally spaced points around the entire unit circle.
+    a : complex, optional
+        The starting point in the complex plane.  Default is 1+0j.
+
+    Returns
+    -------
+    out : ndarray
+        The points in the Z plane at which `CZT` samples the z-transform,
+        when called with arguments `m`, `w`, and `a`, as complex numbers.
+
+    See Also
+    --------
+    CZT : Class that creates a callable chirp z-transform function.
+    czt : Convenience function for quickly calculating CZT.
+
+    Examples
+    --------
+    Plot the points of a 16-point FFT:
+
+    >>> import numpy as np
+    >>> from scipy.signal import czt_points
+    >>> points = czt_points(16)
+    >>> import matplotlib.pyplot as plt
+    >>> plt.plot(points.real, points.imag, 'o')
+    >>> plt.gca().add_patch(plt.Circle((0,0), radius=1, fill=False, alpha=.3))
+    >>> plt.axis('equal')
+    >>> plt.show()
+
+    and a 91-point logarithmic spiral that crosses the unit circle:
+
+    >>> m, w, a = 91, 0.995*np.exp(-1j*np.pi*.05), 0.8*np.exp(1j*np.pi/6)
+    >>> points = czt_points(m, w, a)
+    >>> plt.plot(points.real, points.imag, 'o')
+    >>> plt.gca().add_patch(plt.Circle((0,0), radius=1, fill=False, alpha=.3))
+    >>> plt.axis('equal')
+    >>> plt.show()
+    """
+    m = _validate_sizes(1, m)
+
+    k = arange(m)
+
+    a = 1.0 * a  # at least float
+
+    if w is None:
+        # Nothing specified, default to FFT
+        return a * np.exp(2j * pi * k / m)
+    else:
+        # w specified
+        w = 1.0 * w  # at least float
+        return a * w**-k
+
+
+class CZT:
+    """
+    Create a callable chirp z-transform function.
+
+    Transform to compute the frequency response around a spiral.
+    Objects of this class are callables which can compute the
+    chirp z-transform on their inputs.  This object precalculates the constant
+    chirps used in the given transform.
+
+    Parameters
+    ----------
+    n : int
+        The size of the signal.
+    m : int, optional
+        The number of output points desired.  Default is `n`.
+    w : complex, optional
+        The ratio between points in each step.  This must be precise or the
+        accumulated error will degrade the tail of the output sequence.
+        Defaults to equally spaced points around the entire unit circle.
+    a : complex, optional
+        The starting point in the complex plane.  Default is 1+0j.
+
+    Returns
+    -------
+    f : CZT
+        Callable object ``f(x, axis=-1)`` for computing the chirp z-transform
+        on `x`.
+
+    See Also
+    --------
+    czt : Convenience function for quickly calculating CZT.
+    ZoomFFT : Class that creates a callable partial FFT function.
+
+    Notes
+    -----
+    The defaults are chosen such that ``f(x)`` is equivalent to
+    ``fft.fft(x)`` and, if ``m > len(x)``, that ``f(x, m)`` is equivalent to
+    ``fft.fft(x, m)``.
+
+    If `w` does not lie on the unit circle, then the transform will be
+    around a spiral with exponentially-increasing radius.  Regardless,
+    angle will increase linearly.
+
+    For transforms that do lie on the unit circle, accuracy is better when
+    using `ZoomFFT`, since any numerical error in `w` is
+    accumulated for long data lengths, drifting away from the unit circle.
+
+    The chirp z-transform can be faster than an equivalent FFT with
+    zero padding.  Try it with your own array sizes to see.
+
+    However, the chirp z-transform is considerably less precise than the
+    equivalent zero-padded FFT.
+
+    As this CZT is implemented using the Bluestein algorithm, it can compute
+    large prime-length Fourier transforms in O(N log N) time, rather than the
+    O(N**2) time required by the direct DFT calculation.  (`scipy.fft` also
+    uses Bluestein's algorithm'.)
+
+    (The name "chirp z-transform" comes from the use of a chirp in the
+    Bluestein algorithm.  It does not decompose signals into chirps, like
+    other transforms with "chirp" in the name.)
+
+    References
+    ----------
+    .. [1] Leo I. Bluestein, "A linear filtering approach to the computation
+           of the discrete Fourier transform," Northeast Electronics Research
+           and Engineering Meeting Record 10, 218-219 (1968).
+    .. [2] Rabiner, Schafer, and Rader, "The chirp z-transform algorithm and
+           its application," Bell Syst. Tech. J. 48, 1249-1292 (1969).
+
+    Examples
+    --------
+    Compute multiple prime-length FFTs:
+
+    >>> from scipy.signal import CZT
+    >>> import numpy as np
+    >>> a = np.random.rand(7)
+    >>> b = np.random.rand(7)
+    >>> c = np.random.rand(7)
+    >>> czt_7 = CZT(n=7)
+    >>> A = czt_7(a)
+    >>> B = czt_7(b)
+    >>> C = czt_7(c)
+
+    Display the points at which the FFT is calculated:
+
+    >>> czt_7.points()
+    array([ 1.00000000+0.j        ,  0.62348980+0.78183148j,
+           -0.22252093+0.97492791j, -0.90096887+0.43388374j,
+           -0.90096887-0.43388374j, -0.22252093-0.97492791j,
+            0.62348980-0.78183148j])
+    >>> import matplotlib.pyplot as plt
+    >>> plt.plot(czt_7.points().real, czt_7.points().imag, 'o')
+    >>> plt.gca().add_patch(plt.Circle((0,0), radius=1, fill=False, alpha=.3))
+    >>> plt.axis('equal')
+    >>> plt.show()
+    """
+
+    def __init__(self, n, m=None, w=None, a=1+0j):
+        m = _validate_sizes(n, m)
+
+        k = arange(max(m, n), dtype=np.min_scalar_type(-max(m, n)**2))
+
+        if w is None:
+            # Nothing specified, default to FFT-like
+            w = cmath.exp(-2j*pi/m)
+            wk2 = np.exp(-(1j * pi * ((k**2) % (2*m))) / m)
+        else:
+            # w specified
+            wk2 = w**(k**2/2.)
+
+        a = 1.0 * a  # at least float
+
+        self.w, self.a = w, a
+        self.m, self.n = m, n
+
+        nfft = next_fast_len(n + m - 1)
+        self._Awk2 = a**-k[:n] * wk2[:n]
+        self._nfft = nfft
+        self._Fwk2 = fft(1/np.hstack((wk2[n-1:0:-1], wk2[:m])), nfft)
+        self._wk2 = wk2[:m]
+        self._yidx = slice(n-1, n+m-1)
+
+    def __call__(self, x, *, axis=-1):
+        """
+        Calculate the chirp z-transform of a signal.
+
+        Parameters
+        ----------
+        x : array
+            The signal to transform.
+        axis : int, optional
+            Axis over which to compute the FFT. If not given, the last axis is
+            used.
+
+        Returns
+        -------
+        out : ndarray
+            An array of the same dimensions as `x`, but with the length of the
+            transformed axis set to `m`.
+        """
+        x = np.asarray(x)
+        if x.shape[axis] != self.n:
+            raise ValueError(f"CZT defined for length {self.n}, not "
+                             f"{x.shape[axis]}")
+        # Calculate transpose coordinates, to allow operation on any given axis
+        trnsp = np.arange(x.ndim)
+        trnsp[[axis, -1]] = [-1, axis]
+        x = x.transpose(*trnsp)
+        y = ifft(self._Fwk2 * fft(x*self._Awk2, self._nfft))
+        y = y[..., self._yidx] * self._wk2
+        return y.transpose(*trnsp)
+
+    def points(self):
+        """
+        Return the points at which the chirp z-transform is computed.
+        """
+        return czt_points(self.m, self.w, self.a)
+
+
+class ZoomFFT(CZT):
+    """
+    Create a callable zoom FFT transform function.
+
+    This is a specialization of the chirp z-transform (`CZT`) for a set of
+    equally-spaced frequencies around the unit circle, used to calculate a
+    section of the FFT more efficiently than calculating the entire FFT and
+    truncating.
+
+    Parameters
+    ----------
+    n : int
+        The size of the signal.
+    fn : array_like
+        A length-2 sequence [`f1`, `f2`] giving the frequency range, or a
+        scalar, for which the range [0, `fn`] is assumed.
+    m : int, optional
+        The number of points to evaluate.  Default is `n`.
+    fs : float, optional
+        The sampling frequency.  If ``fs=10`` represented 10 kHz, for example,
+        then `f1` and `f2` would also be given in kHz.
+        The default sampling frequency is 2, so `f1` and `f2` should be
+        in the range [0, 1] to keep the transform below the Nyquist
+        frequency.
+    endpoint : bool, optional
+        If True, `f2` is the last sample. Otherwise, it is not included.
+        Default is False.
+
+    Returns
+    -------
+    f : ZoomFFT
+        Callable object ``f(x, axis=-1)`` for computing the zoom FFT on `x`.
+
+    See Also
+    --------
+    zoom_fft : Convenience function for calculating a zoom FFT.
+
+    Notes
+    -----
+    The defaults are chosen such that ``f(x, 2)`` is equivalent to
+    ``fft.fft(x)`` and, if ``m > len(x)``, that ``f(x, 2, m)`` is equivalent to
+    ``fft.fft(x, m)``.
+
+    Sampling frequency is 1/dt, the time step between samples in the
+    signal `x`.  The unit circle corresponds to frequencies from 0 up
+    to the sampling frequency.  The default sampling frequency of 2
+    means that `f1`, `f2` values up to the Nyquist frequency are in the
+    range [0, 1). For `f1`, `f2` values expressed in radians, a sampling
+    frequency of 2*pi should be used.
+
+    Remember that a zoom FFT can only interpolate the points of the existing
+    FFT.  It cannot help to resolve two separate nearby frequencies.
+    Frequency resolution can only be increased by increasing acquisition
+    time.
+
+    These functions are implemented using Bluestein's algorithm (as is
+    `scipy.fft`). [2]_
+
+    References
+    ----------
+    .. [1] Steve Alan Shilling, "A study of the chirp z-transform and its
+           applications", pg 29 (1970)
+           https://krex.k-state.edu/dspace/bitstream/handle/2097/7844/LD2668R41972S43.pdf
+    .. [2] Leo I. Bluestein, "A linear filtering approach to the computation
+           of the discrete Fourier transform," Northeast Electronics Research
+           and Engineering Meeting Record 10, 218-219 (1968).
+
+    Examples
+    --------
+    To plot the transform results use something like the following:
+
+    >>> import numpy as np
+    >>> from scipy.signal import ZoomFFT
+    >>> t = np.linspace(0, 1, 1021)
+    >>> x = np.cos(2*np.pi*15*t) + np.sin(2*np.pi*17*t)
+    >>> f1, f2 = 5, 27
+    >>> transform = ZoomFFT(len(x), [f1, f2], len(x), fs=1021)
+    >>> X = transform(x)
+    >>> f = np.linspace(f1, f2, len(x))
+    >>> import matplotlib.pyplot as plt
+    >>> plt.plot(f, 20*np.log10(np.abs(X)))
+    >>> plt.show()
+    """
+
+    def __init__(self, n, fn, m=None, *, fs=2, endpoint=False):
+        m = _validate_sizes(n, m)
+
+        k = arange(max(m, n), dtype=np.min_scalar_type(-max(m, n)**2))
+
+        if np.size(fn) == 2:
+            f1, f2 = fn
+        elif np.size(fn) == 1:
+            f1, f2 = 0.0, fn
+        else:
+            raise ValueError('fn must be a scalar or 2-length sequence')
+
+        self.f1, self.f2, self.fs = f1, f2, fs
+
+        if endpoint:
+            scale = ((f2 - f1) * m) / (fs * (m - 1))
+        else:
+            scale = (f2 - f1) / fs
+        a = cmath.exp(2j * pi * f1/fs)
+        wk2 = np.exp(-(1j * pi * scale * k**2) / m)
+
+        self.w = cmath.exp(-2j*pi/m * scale)
+        self.a = a
+        self.m, self.n = m, n
+
+        ak = np.exp(-2j * pi * f1/fs * k[:n])
+        self._Awk2 = ak * wk2[:n]
+
+        nfft = next_fast_len(n + m - 1)
+        self._nfft = nfft
+        self._Fwk2 = fft(1/np.hstack((wk2[n-1:0:-1], wk2[:m])), nfft)
+        self._wk2 = wk2[:m]
+        self._yidx = slice(n-1, n+m-1)
+
+
+def czt(x, m=None, w=None, a=1+0j, *, axis=-1):
+    """
+    Compute the frequency response around a spiral in the Z plane.
+
+    Parameters
+    ----------
+    x : array
+        The signal to transform.
+    m : int, optional
+        The number of output points desired.  Default is the length of the
+        input data.
+    w : complex, optional
+        The ratio between points in each step.  This must be precise or the
+        accumulated error will degrade the tail of the output sequence.
+        Defaults to equally spaced points around the entire unit circle.
+    a : complex, optional
+        The starting point in the complex plane.  Default is 1+0j.
+    axis : int, optional
+        Axis over which to compute the FFT. If not given, the last axis is
+        used.
+
+    Returns
+    -------
+    out : ndarray
+        An array of the same dimensions as `x`, but with the length of the
+        transformed axis set to `m`.
+
+    See Also
+    --------
+    CZT : Class that creates a callable chirp z-transform function.
+    zoom_fft : Convenience function for partial FFT calculations.
+
+    Notes
+    -----
+    The defaults are chosen such that ``signal.czt(x)`` is equivalent to
+    ``fft.fft(x)`` and, if ``m > len(x)``, that ``signal.czt(x, m)`` is
+    equivalent to ``fft.fft(x, m)``.
+
+    If the transform needs to be repeated, use `CZT` to construct a
+    specialized transform function which can be reused without
+    recomputing constants.
+
+    An example application is in system identification, repeatedly evaluating
+    small slices of the z-transform of a system, around where a pole is
+    expected to exist, to refine the estimate of the pole's true location. [1]_
+
+    References
+    ----------
+    .. [1] Steve Alan Shilling, "A study of the chirp z-transform and its
+           applications", pg 20 (1970)
+           https://krex.k-state.edu/dspace/bitstream/handle/2097/7844/LD2668R41972S43.pdf
+
+    Examples
+    --------
+    Generate a sinusoid:
+
+    >>> import numpy as np
+    >>> f1, f2, fs = 8, 10, 200  # Hz
+    >>> t = np.linspace(0, 1, fs, endpoint=False)
+    >>> x = np.sin(2*np.pi*t*f2)
+    >>> import matplotlib.pyplot as plt
+    >>> plt.plot(t, x)
+    >>> plt.axis([0, 1, -1.1, 1.1])
+    >>> plt.show()
+
+    Its discrete Fourier transform has all of its energy in a single frequency
+    bin:
+
+    >>> from scipy.fft import rfft, rfftfreq
+    >>> from scipy.signal import czt, czt_points
+    >>> plt.plot(rfftfreq(fs, 1/fs), abs(rfft(x)))
+    >>> plt.margins(0, 0.1)
+    >>> plt.show()
+
+    However, if the sinusoid is logarithmically-decaying:
+
+    >>> x = np.exp(-t*f1) * np.sin(2*np.pi*t*f2)
+    >>> plt.plot(t, x)
+    >>> plt.axis([0, 1, -1.1, 1.1])
+    >>> plt.show()
+
+    the DFT will have spectral leakage:
+
+    >>> plt.plot(rfftfreq(fs, 1/fs), abs(rfft(x)))
+    >>> plt.margins(0, 0.1)
+    >>> plt.show()
+
+    While the DFT always samples the z-transform around the unit circle, the
+    chirp z-transform allows us to sample the Z-transform along any
+    logarithmic spiral, such as a circle with radius smaller than unity:
+
+    >>> M = fs // 2  # Just positive frequencies, like rfft
+    >>> a = np.exp(-f1/fs)  # Starting point of the circle, radius < 1
+    >>> w = np.exp(-1j*np.pi/M)  # "Step size" of circle
+    >>> points = czt_points(M + 1, w, a)  # M + 1 to include Nyquist
+    >>> plt.plot(points.real, points.imag, '.')
+    >>> plt.gca().add_patch(plt.Circle((0,0), radius=1, fill=False, alpha=.3))
+    >>> plt.axis('equal'); plt.axis([-1.05, 1.05, -0.05, 1.05])
+    >>> plt.show()
+
+    With the correct radius, this transforms the decaying sinusoid (and others
+    with the same decay rate) without spectral leakage:
+
+    >>> z_vals = czt(x, M + 1, w, a)  # Include Nyquist for comparison to rfft
+    >>> freqs = np.angle(points)*fs/(2*np.pi)  # angle = omega, radius = sigma
+    >>> plt.plot(freqs, abs(z_vals))
+    >>> plt.margins(0, 0.1)
+    >>> plt.show()
+    """
+    x = np.asarray(x)
+    transform = CZT(x.shape[axis], m=m, w=w, a=a)
+    return transform(x, axis=axis)
+
+
+def zoom_fft(x, fn, m=None, *, fs=2, endpoint=False, axis=-1):
+    """
+    Compute the DFT of `x` only for frequencies in range `fn`.
+
+    Parameters
+    ----------
+    x : array
+        The signal to transform.
+    fn : array_like
+        A length-2 sequence [`f1`, `f2`] giving the frequency range, or a
+        scalar, for which the range [0, `fn`] is assumed.
+    m : int, optional
+        The number of points to evaluate.  The default is the length of `x`.
+    fs : float, optional
+        The sampling frequency.  If ``fs=10`` represented 10 kHz, for example,
+        then `f1` and `f2` would also be given in kHz.
+        The default sampling frequency is 2, so `f1` and `f2` should be
+        in the range [0, 1] to keep the transform below the Nyquist
+        frequency.
+    endpoint : bool, optional
+        If True, `f2` is the last sample. Otherwise, it is not included.
+        Default is False.
+    axis : int, optional
+        Axis over which to compute the FFT. If not given, the last axis is
+        used.
+
+    Returns
+    -------
+    out : ndarray
+        The transformed signal.  The Fourier transform will be calculated
+        at the points f1, f1+df, f1+2df, ..., f2, where df=(f2-f1)/m.
+
+    See Also
+    --------
+    ZoomFFT : Class that creates a callable partial FFT function.
+
+    Notes
+    -----
+    The defaults are chosen such that ``signal.zoom_fft(x, 2)`` is equivalent
+    to ``fft.fft(x)`` and, if ``m > len(x)``, that ``signal.zoom_fft(x, 2, m)``
+    is equivalent to ``fft.fft(x, m)``.
+
+    To graph the magnitude of the resulting transform, use::
+
+        plot(linspace(f1, f2, m, endpoint=False), abs(zoom_fft(x, [f1, f2], m)))
+
+    If the transform needs to be repeated, use `ZoomFFT` to construct
+    a specialized transform function which can be reused without
+    recomputing constants.
+
+    Examples
+    --------
+    To plot the transform results use something like the following:
+
+    >>> import numpy as np
+    >>> from scipy.signal import zoom_fft
+    >>> t = np.linspace(0, 1, 1021)
+    >>> x = np.cos(2*np.pi*15*t) + np.sin(2*np.pi*17*t)
+    >>> f1, f2 = 5, 27
+    >>> X = zoom_fft(x, [f1, f2], len(x), fs=1021)
+    >>> f = np.linspace(f1, f2, len(x))
+    >>> import matplotlib.pyplot as plt
+    >>> plt.plot(f, 20*np.log10(np.abs(X)))
+    >>> plt.show()
+    """
+    x = np.asarray(x)
+    transform = ZoomFFT(x.shape[axis], fn, m=m, fs=fs, endpoint=endpoint)
+    return transform(x, axis=axis)