scipy 1.16.1__cp311-cp311-macosx_12_0_arm64.whl → 1.16.2__cp311-cp311-macosx_12_0_arm64.whl

scipy/signal/tests/test_spectral.py

@@ -1055,7 +1055,6 @@ class TestLombscargle:
         delta = f[1] - f[0]
         assert(w - f[np.argmax(P)] < (delta/2.))
 
-
     def test_amplitude(self):
         # Test if height of peak in unnormalized Lomb-Scargle periodogram
         # corresponds to amplitude of the generated input signal.
@@ -1503,6 +1502,45 @@ class TestLombscargle:
 
         lombscargle(t, y, freqs)
 
+    def test_input_mutation(self):
+        # this tests for mutation of the input arrays
+        # https://github.com/scipy/scipy/issues/23474
+
+        # Input parameters
+        ampl = 2.
+        w = 1.
+        phi = 0.5 * np.pi
+        nin = 100
+        nout = 1000
+        p = 0.7  # Fraction of points to select
+
+        # Randomly select a fraction of an array with timesteps
+        rng = np.random.default_rng()
+        r = rng.random(nin)
+        t = np.linspace(0.01*np.pi, 10.*np.pi, nin)[r >= p]
+
+        # Plot a sine wave for the selected times
+        y = ampl * np.sin(w*t + phi)
+
+        # Define the array of frequencies for which to compute the periodogram
+        f = np.linspace(0.01, 10., nout)
+
+        weights = np.ones_like(y)
+
+        # create original copies before passing
+        t_org = t.copy()
+        y_org = y.copy()
+        f_org = f.copy()
+        weights_org = weights.copy()
+
+        lombscargle(t, y, f, precenter=True, weights=weights)
+
+        # check all 4 array inputs
+        assert_array_equal(t, t_org)
+        assert_array_equal(y, y_org)
+        assert_array_equal(f, f_org)
+        assert_array_equal(weights, weights_org)
+
 
 class TestSTFT:
     @pytest.mark.thread_unsafe

scipy/spatial/qhull_src/COPYING_QHULL.txt

@@ -0,0 +1,39 @@
+                    Qhull, Copyright (c) 1993-2020
+                    
+                            C.B. Barber
+                           Arlington, MA 
+                          
+                               and
+
+       The National Science and Technology Research Center for
+        Computation and Visualization of Geometric Structures
+                        (The Geometry Center)
+                       University of Minnesota
+
+                       email: qhull@qhull.org
+
+This software includes Qhull from C.B. Barber and The Geometry Center.  
+Files derived from Qhull 1.0 are copyrighted by the Geometry Center.  The
+remaining files are copyrighted by C.B. Barber.  Qhull is free software 
+and may be obtained via http from www.qhull.org.  It may be freely copied, 
+modified, and redistributed under the following conditions:
+
+1. All copyright notices must remain intact in all files.
+
+2. A copy of this text file must be distributed along with any copies 
+   of Qhull that you redistribute; this includes copies that you have 
+   modified, or copies of programs or other software products that 
+   include Qhull.
+
+3. If you modify Qhull, you must include a notice giving the
+   name of the person performing the modification, the date of
+   modification, and the reason for such modification.
+
+4. When distributing modified versions of Qhull, or other software 
+   products that include Qhull, you must provide notice that the original 
+   source code may be obtained as noted above.
+
+5. There is no warranty or other guarantee of fitness for Qhull, it is 
+   provided solely "as is".  Bug reports or fixes may be sent to 
+   qhull_bug@qhull.org; the authors may or may not act on them as 
+   they desire.

scipy/spatial/tests/test_distance.py

@@ -32,14 +32,14 @@
 # NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
 # SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
 
-import sys
-import os.path
-
 from functools import wraps, partial
+import os.path
+import sys
+import sysconfig
+import warnings
 import weakref
 
 import numpy as np
-import warnings
 from numpy.linalg import norm
 from numpy.testing import (verbose, assert_,
                            assert_array_equal, assert_equal,
@@ -632,6 +632,7 @@ class TestCdist:
                     assert_allclose(y1, y2, rtol=eps, verbose=verbose > 2)
 
     @pytest.mark.thread_unsafe
+    @pytest.mark.skipif(sysconfig.get_platform() == 'win-arm64', reason="numpy#29442")
     def test_cdist_out(self, metric):
         # Test that out parameter works properly
         eps = 1e-15

scipy/version.py

@@ -2,10 +2,10 @@
 """
 Module to expose more detailed version info for the installed `scipy`
 """
-version = "1.16.1"
+version = "1.16.2"
 full_version = version
 short_version = version.split('.dev')[0]
-git_revision = "0cf8e9541b1a2457992bf4ec2c0c669da373e497"
+git_revision = "b1296b9b4393e251511fe8fdd3e58c22a1124899"
 release = 'dev' not in version and '+' not in version
 
 if not release:

{scipy-1.16.1.dist-info → scipy-1.16.2.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: scipy
-Version: 1.16.1
+Version: 1.16.2
 Summary: Fundamental algorithms for scientific computing in Python
 Maintainer-Email: SciPy Developers <scipy-dev@python.org>
 License: Copyright (c) 2001-2002 Enthought, Inc. 2003, SciPy Developers.
@@ -964,7 +964,7 @@ Project-URL: tracker, https://github.com/scipy/scipy/issues
 Requires-Python: >=3.11
 Requires-Dist: numpy<2.6,>=1.25.2
 Provides-Extra: test
-Requires-Dist: pytest; extra == "test"
+Requires-Dist: pytest>=8.0.0; extra == "test"
 Requires-Dist: pytest-cov; extra == "test"
 Requires-Dist: pytest-timeout; extra == "test"
 Requires-Dist: pytest-xdist; extra == "test"