scipy 1.16.0rc2__cp313-cp313-win_amd64.whl → 1.16.1__cp313-cp313-win_amd64.whl

scipy/__config__.py

@@ -36,7 +36,7 @@ CONFIG = _cleanup(
             "cython": {
                 "name": r"cython",
                 "linker": r"cython",
-                "version": r"3.1.1",
+                "version": r"3.1.2",
                 "commands": r"cython",
                 "args": r"",
                 "linker args": r"",
@@ -59,7 +59,7 @@ CONFIG = _cleanup(
             },
             "pythran": {
                 "version": r"0.18.0",
-                "include directory": r"C:\Users\runneradmin\AppData\Local\Temp\pip-build-env-_euf7osm\overlay\Lib\site-packages/pythran"
+                "include directory": r"C:\Users\runneradmin\AppData\Local\Temp\build-env-45qfawlo\Lib\site-packages/pythran"
             },
         },
         "Machine Information": {
@@ -83,8 +83,8 @@ CONFIG = _cleanup(
                 "found": bool("True".lower().replace('false', '')),
                 "version": "0.3.28",
                 "detection method": "pkgconfig",
-                "include directory": r"C:/Users/runneradmin/AppData/Local/Temp/cibw-run-mznfgwro/cp313-win_amd64/build/venv/Lib/site-packages/scipy_openblas32/include",
-                "lib directory": r"C:/Users/runneradmin/AppData/Local/Temp/cibw-run-mznfgwro/cp313-win_amd64/build/venv/Lib/site-packages/scipy_openblas32/lib",
+                "include directory": r"C:/Users/runneradmin/AppData/Local/Temp/cibw-run-4zab8n4n/cp313-win_amd64/build/venv/Lib/site-packages/scipy_openblas32/include",
+                "lib directory": r"C:/Users/runneradmin/AppData/Local/Temp/cibw-run-4zab8n4n/cp313-win_amd64/build/venv/Lib/site-packages/scipy_openblas32/lib",
                 "openblas configuration": r"OpenBLAS 0.3.28 DYNAMIC_ARCH NO_AFFINITY Haswell MAX_THREADS=24",
                 "pc file directory": r"D:/a/scipy/scipy",
             },
@@ -93,20 +93,20 @@ CONFIG = _cleanup(
                 "found": bool("True".lower().replace('false', '')),
                 "version": "0.3.28",
                 "detection method": "pkgconfig",
-                "include directory": r"C:/Users/runneradmin/AppData/Local/Temp/cibw-run-mznfgwro/cp313-win_amd64/build/venv/Lib/site-packages/scipy_openblas32/include",
-                "lib directory": r"C:/Users/runneradmin/AppData/Local/Temp/cibw-run-mznfgwro/cp313-win_amd64/build/venv/Lib/site-packages/scipy_openblas32/lib",
+                "include directory": r"C:/Users/runneradmin/AppData/Local/Temp/cibw-run-4zab8n4n/cp313-win_amd64/build/venv/Lib/site-packages/scipy_openblas32/include",
+                "lib directory": r"C:/Users/runneradmin/AppData/Local/Temp/cibw-run-4zab8n4n/cp313-win_amd64/build/venv/Lib/site-packages/scipy_openblas32/lib",
                 "openblas configuration": r"OpenBLAS 0.3.28 DYNAMIC_ARCH NO_AFFINITY Haswell MAX_THREADS=24",
                 "pc file directory": r"D:/a/scipy/scipy",
             },
             "pybind11": {
                 "name": "pybind11",
-                "version": "2.13.6",
+                "version": "3.0.0",
                 "detection method": "config-tool",
                 "include directory": r"unknown",
             },
         },
         "Python Information": {
-            "path": r"C:\Users\runneradmin\AppData\Local\Temp\cibw-run-mznfgwro\cp313-win_amd64\build\venv\Scripts\python.EXE",
+            "path": r"C:\Users\runneradmin\AppData\Local\Temp\build-env-45qfawlo\Scripts\python.exe",
             "version": "3.13",
         },
     }

scipy/__init__.py

@@ -41,14 +41,14 @@ Public API in the main SciPy namespace
 
 
 # start delvewheel patch
-def _delvewheel_patch_1_10_1():
+def _delvewheel_patch_1_11_0():
     import os
     if os.path.isdir(libs_dir := os.path.abspath(os.path.join(os.path.dirname(__file__), os.pardir, 'scipy.libs'))):
         os.add_dll_directory(libs_dir)
 
 
-_delvewheel_patch_1_10_1()
-del _delvewheel_patch_1_10_1
+_delvewheel_patch_1_11_0()
+del _delvewheel_patch_1_11_0
 # end delvewheel patch
 
 import importlib as _importlib

scipy/_lib/_util.py

@@ -351,6 +351,13 @@ def _transition_to_rng(old_name, *, position_num=None, end_version=None,
 
             return fun(*args, **kwargs)
 
+        # Add the old parameter name to the function signature
+        wrapped_signature = inspect.signature(fun)
+        wrapper.__signature__ = wrapped_signature.replace(parameters=[
+            *wrapped_signature.parameters.values(),
+            inspect.Parameter(old_name, inspect.Parameter.KEYWORD_ONLY, default=None),
+        ])
+
         if replace_doc:
             doc = FunctionDoc(wrapper)
             parameter_names = [param.name for param in doc['Parameters']]

scipy/conftest.py

@@ -34,6 +34,31 @@ except Exception:
 
 
 def pytest_configure(config):
+    """
+    Add pytest markers to avoid PytestUnknownMarkWarning
+
+    This needs to contain all markers that are SciPy-specific, as well as
+    dummy fallbacks for markers defined in optional test packages.
+
+    Note that we need both the registration here *and* in `pytest.ini`.
+    """
+    config.addinivalue_line("markers",
+        "slow: Tests that are very slow.")
+    config.addinivalue_line("markers",
+        "xslow: mark test as extremely slow (not run unless explicitly requested)")
+    config.addinivalue_line("markers",
+        "xfail_on_32bit: mark test as failing on 32-bit platforms")
+    config.addinivalue_line("markers",
+        "array_api_backends: test iterates on all array API backends")
+    config.addinivalue_line("markers",
+        ("skip_xp_backends(backends, reason=None, np_only=False, cpu_only=False, " +
+         "eager_only=False, exceptions=None): mark the desired skip configuration " +
+         "for the `skip_xp_backends` fixture"))
+    config.addinivalue_line("markers",
+        ("xfail_xp_backends(backends, reason=None, np_only=False, cpu_only=False, " +
+         "eager_only=False, exceptions=None): mark the desired xfail configuration " +
+         "for the `xfail_xp_backends` fixture"))
+
     try:
         import pytest_timeout  # noqa:F401
     except Exception:

scipy/io/matlab/tests/test_streams.py

@@ -2,7 +2,9 @@
 
 """
 
+import platform
 import os
+import sys
 import zlib
 
 from io import BytesIO
@@ -15,6 +17,7 @@ import numpy as np
 
 from numpy.testing import assert_, assert_equal
 from pytest import raises as assert_raises
+import pytest
 
 from scipy.io.matlab._streams import (make_stream,
     GenericStream, ZlibInputStream,
@@ -194,6 +197,9 @@ class TestZlibInputStream:
         stream.seek(1024)
         assert_(stream.all_data_read())
 
+    @pytest.mark.skipif(
+            (platform.system() == 'Windows' and sys.version_info >= (3, 14)),
+            reason='gh-23185')
     def test_all_data_read_overlap(self):
         COMPRESSION_LEVEL = 6
 
@@ -210,6 +216,9 @@ class TestZlibInputStream:
         stream.seek(len(data))
         assert_(stream.all_data_read())
 
+    @pytest.mark.skipif(
+            (platform.system() == 'Windows' and sys.version_info >= (3, 14)),
+            reason='gh-23185')
     def test_all_data_read_bad_checksum(self):
         COMPRESSION_LEVEL = 6
 

scipy/linalg/blas.py

@@ -45,15 +45,19 @@ BLAS Level 1 functions
 .. autosummary::
    :toctree: generated/
 
-   caxpy
-   ccopy
-   cdotc
-   cdotu
-   crotg
-   cscal
-   csrot
-   csscal
-   cswap
+   sasum
+   saxpy
+   scasum
+   scnrm2
+   scopy
+   sdot
+   snrm2
+   srot
+   srotg
+   srotm
+   srotmg
+   sscal
+   sswap
    dasum
    daxpy
    dcopy
@@ -71,19 +75,15 @@ BLAS Level 1 functions
    idamax
    isamax
    izamax
-   sasum
-   saxpy
-   scasum
-   scnrm2
-   scopy
-   sdot
-   snrm2
-   srot
-   srotg
-   srotm
-   srotmg
-   sscal
-   sswap
+   caxpy
+   ccopy
+   cdotc
+   cdotu
+   crotg
+   cscal
+   csrot
+   csscal
+   cswap
    zaxpy
    zcopy
    zdotc
@@ -104,12 +104,15 @@ BLAS Level 2 functions
    sgemv
    sger
    ssbmv
+   sspmv
    sspr
    sspr2
    ssymv
    ssyr
    ssyr2
    stbmv
+   stbsv
+   stpmv
    stpsv
    strmv
    strsv
@@ -117,12 +120,15 @@ BLAS Level 2 functions
    dgemv
    dger
    dsbmv
+   dspmv
    dspr
    dspr2
    dsymv
    dsyr
    dsyr2
    dtbmv
+   dtbsv
+   dtpmv
    dtpsv
    dtrmv
    dtrsv
@@ -137,13 +143,15 @@ BLAS Level 2 functions
    chpmv
    chpr
    chpr2
+   cspmv
+   cspr
+   csyr
    ctbmv
    ctbsv
    ctpmv
    ctpsv
    ctrmv
    ctrsv
-   csyr
    zgbmv
    zgemv
    zgerc
@@ -155,12 +163,15 @@ BLAS Level 2 functions
    zhpmv
    zhpr
    zhpr2
+   zspmv
+   zspr
+   zsyr
    ztbmv
    ztbsv
    ztpmv
+   ztpsv
    ztrmv
    ztrsv
-   zsyr
 
 BLAS Level 3 functions
 ----------------------

scipy/linalg/tests/test_matfuncs.py

@@ -460,6 +460,13 @@ class TestSqrtM:
         np.fill_diagonal(M, 1)
         assert np.isrealobj(sqrtm(M))
 
+    def test_gh23278(self):
+        M = np.array([[1., 0., 0.], [0, 1, -1j], [0, 1j, 2]])
+        sq = sqrtm(M)
+        assert_allclose(sq @ sq, M, atol=1e-14)
+        sq = sqrtm(M.astype(np.complex64))
+        assert_allclose(sq @ sq, M, atol=1e-6)
+
     def test_data_size_preservation_uint_in_float_out(self):
         M = np.eye(10, dtype=np.uint8)
         assert sqrtm(M).dtype == np.float64

scipy/ndimage/_filters.py

@@ -232,7 +232,9 @@ def vectorized_filter(input, function, *, size=None, footprint=None, output=None
         We adjust `size` to the number of dimensions indicated by `axes`.
         For instance, if `axes` is ``(0, 2, 1)`` and ``n`` is passed for ``size``,
         then the effective `size` is ``(n, n, n)``.
-    %(output)s
+    output : array, optional
+        The array in which to place the output. By default, an array of the dtype
+        returned by `function` will be created.
     mode : {'reflect', 'constant', 'nearest', 'mirror', 'wrap'}, optional
         The `mode` parameter determines how the input array is extended
         beyond its boundaries. Default is 'reflect'. Behavior for each valid
@@ -1987,7 +1989,14 @@ def _rank_filter(input, rank, size=None, footprint=None, output=None,
                 "A sequence of modes is not supported by non-separable rank "
                 "filters")
         mode = _ni_support._extend_mode_to_code(mode, is_filter=True)
-        if input.ndim == 1:
+        # Some corner cases are currently not allowed to use the
+        # "new"/fast 1D rank filter code, including when the
+        # footprint is large compared to the array size.
+        # See discussion in gh-23293; longer-term it may be possible
+        # to allow the fast path for these corner cases as well,
+        # if algorithmic fixes are found.
+        lim2 = input.size - ((footprint.size - 1) // 2 - origin)
+        if input.ndim == 1 and ((lim2 >= 0) or (input.size == 1)):
             if input.dtype in (np.int64, np.float64, np.float32):
                 x = input
                 x_out = output