scipy 1.16.0rc2__cp313-cp313-macosx_14_0_arm64.whl → 1.16.2__cp313-cp313-macosx_14_0_arm64.whl

scipy/spatial/qhull_src/COPYING_QHULL.txt

@@ -0,0 +1,39 @@
+                    Qhull, Copyright (c) 1993-2020
+                    
+                            C.B. Barber
+                           Arlington, MA 
+                          
+                               and
+
+       The National Science and Technology Research Center for
+        Computation and Visualization of Geometric Structures
+                        (The Geometry Center)
+                       University of Minnesota
+
+                       email: qhull@qhull.org
+
+This software includes Qhull from C.B. Barber and The Geometry Center.  
+Files derived from Qhull 1.0 are copyrighted by the Geometry Center.  The
+remaining files are copyrighted by C.B. Barber.  Qhull is free software 
+and may be obtained via http from www.qhull.org.  It may be freely copied, 
+modified, and redistributed under the following conditions:
+
+1. All copyright notices must remain intact in all files.
+
+2. A copy of this text file must be distributed along with any copies 
+   of Qhull that you redistribute; this includes copies that you have 
+   modified, or copies of programs or other software products that 
+   include Qhull.
+
+3. If you modify Qhull, you must include a notice giving the
+   name of the person performing the modification, the date of
+   modification, and the reason for such modification.
+
+4. When distributing modified versions of Qhull, or other software 
+   products that include Qhull, you must provide notice that the original 
+   source code may be obtained as noted above.
+
+5. There is no warranty or other guarantee of fitness for Qhull, it is 
+   provided solely "as is".  Bug reports or fixes may be sent to 
+   qhull_bug@qhull.org; the authors may or may not act on them as 
+   they desire.

scipy/spatial/tests/test_distance.py

@@ -32,14 +32,14 @@
 # NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
 # SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
 
-import sys
-import os.path
-
 from functools import wraps, partial
+import os.path
+import sys
+import sysconfig
+import warnings
 import weakref
 
 import numpy as np
-import warnings
 from numpy.linalg import norm
 from numpy.testing import (verbose, assert_,
                            assert_array_equal, assert_equal,
@@ -632,6 +632,7 @@ class TestCdist:
                     assert_allclose(y1, y2, rtol=eps, verbose=verbose > 2)
 
     @pytest.mark.thread_unsafe
+    @pytest.mark.skipif(sysconfig.get_platform() == 'win-arm64', reason="numpy#29442")
     def test_cdist_out(self, metric):
         # Test that out parameter works properly
         eps = 1e-15

scipy/stats/_continuous_distns.py

@@ -935,23 +935,26 @@ class beta_gen(rv_continuous):
             log_term = sum_ab*np.log1p(a/b) + np.log(b) - 2*np.log(sum_ab)
             return t1 + t2 + log_term
 
-        def threshold_large(v):
-            if v == 1.0:
-                return 1000
-
-            j = np.log10(v)
-            digits = int(j)
-            d = int(v / 10 ** digits) + 2
-            return d*10**(7 + j)
-
-        if a >= 4.96e6 and b >= 4.96e6:
-            return asymptotic_ab_large(a, b)
-        elif a <= 4.9e6 and b - a >= 1e6 and b >= threshold_large(a):
-            return asymptotic_b_large(a, b)
-        elif b <= 4.9e6 and a - b >= 1e6 and a >= threshold_large(b):
+        def asymptotic_a_large(a, b):
             return asymptotic_b_large(b, a)
-        else:
-            return regular(a, b)
+
+        def threshold_large(v):
+            j = np.floor(np.log10(v))
+            d = np.floor(v / 10 ** j) + 2
+            return xpx.apply_where(v != 1.0, (d, j), lambda d_, j_: d_ * 10**(7 + j_),
+                                   fill_value=1000)
+
+        threshold_a = threshold_large(a)
+        threshold_b = threshold_large(b)
+        return _lazyselect([(a >= 4.96e6) & (b >= 4.96e6),
+                            (a <= 4.9e6) & (b - a >= 1e6) & (b >= threshold_a),
+                            (b <= 4.9e6) & (a - b >= 1e6) & (a >= threshold_b),
+                            (a < 4.9e6) & (b < 4.9e6)
+                           ],
+                           [asymptotic_ab_large, asymptotic_b_large,
+                            asymptotic_a_large, regular],
+                           [a, b]
+        )
 
 
 beta = beta_gen(a=0.0, b=1.0, name='beta')

scipy/stats/_distribution_infrastructure.py

@@ -5100,6 +5100,26 @@ class Mixture(_ProbabilityDistribution):
     .. [1] Mixture distribution, *Wikipedia*,
            https://en.wikipedia.org/wiki/Mixture_distribution
 
+
+    Examples
+    --------
+    A mixture of normal distributions:
+
+    >>> import numpy as np
+    >>> from scipy import stats
+    >>> import matplotlib.pyplot as plt
+    >>> X1 = stats.Normal(mu=-2, sigma=1)
+    >>> X2 = stats.Normal(mu=2, sigma=1)
+    >>> mixture = stats.Mixture([X1, X2], weights=[0.4, 0.6])
+    >>> print(f'mean: {mixture.mean():.2f}, '
+    ...       f'median: {mixture.median():.2f}, '
+    ...       f'mode: {mixture.mode():.2f}')
+    mean: 0.40, median: 1.04, mode: 2.00
+    >>> x = np.linspace(-10, 10, 300)
+    >>> plt.plot(x, mixture.pdf(x))
+    >>> plt.title('PDF of normal distribution mixture')
+    >>> plt.show()
+
     """
     # Todo:
     # Add support for array shapes, weights

scipy/stats/_resampling.py

@@ -942,7 +942,7 @@ def monte_carlo_test(data, rvs, statistic, *, vectorized=None,
                      for rvs_i, n_observations_i in zip(rvs, n_observations)]
         null_distribution.append(statistic(*resamples, axis=-1))
     null_distribution = xp.concat(null_distribution)
-    null_distribution = xp.reshape(null_distribution, [-1] + [1]*observed.ndim)
+    null_distribution = xp.reshape(null_distribution, (-1,) + (1,)*observed.ndim)
 
     # relative tolerance for detecting numerically distinct but
     # theoretically equal values in the null distribution

scipy/stats/_stats_py.py

@@ -10975,7 +10975,7 @@ def _xp_mean(x, /, *, axis=None, weights=None, keepdims=False, nan_policy='propa
             for i in axes:
                 final_shape[i] = 1
 
-        res = xp.reshape(res, final_shape)
+        res = xp.reshape(res, tuple(final_shape))
 
     return res[()] if res.ndim == 0 else res
 

scipy/stats/tests/test_distributions.py

@@ -5003,6 +5003,19 @@ class TestBeta:
         #     return float(entropy)
         assert_allclose(stats.beta(a, b).entropy(), ref, rtol=tol)
 
+    def test_entropy_broadcasting(self):
+        # gh-23127 reported that the entropy method of the beta
+        # distribution did not broadcast correctly.
+        Beta = stats.make_distribution(stats.beta)
+        a = np.asarray([5e6, 100, 1e9, 10])
+        b = np.asarray([5e6, 1e9, 100, 20])
+        res = Beta(a=a, b=b).entropy()
+        ref = np.asarray([Beta(a=a[0], b=b[0]).entropy(),
+                          Beta(a=a[1], b=b[1]).entropy(),
+                          Beta(a=a[2], b=b[2]).entropy(),
+                          Beta(a=a[3], b=b[3]).entropy()])
+        assert_allclose(res, ref)
+
 
 class TestBetaPrime:
     # the test values are used in test_cdf_gh_17631 / test_ppf_gh_17631

scipy/stats/tests/test_fast_gen_inversion.py

@@ -6,6 +6,7 @@ from numpy.testing import (assert_array_equal, assert_allclose,
 from copy import deepcopy
 from scipy.stats.sampling import FastGeneratorInversion
 from scipy import stats
+from scipy._lib._testutils import IS_MUSL
 
 
 def test_bad_args():
@@ -142,6 +143,7 @@ def test_geninvgauss_uerror():
 
 
 # TODO: add more distributions
+@pytest.mark.skipif(IS_MUSL, reason="Hits RecursionError, see gh-23172")
 @pytest.mark.fail_slow(5)
 @pytest.mark.parametrize(("distname, args"), [("beta", (0.11, 0.11))])
 def test_error_extreme_params(distname, args):

scipy/stats/tests/test_morestats.py

@@ -2053,13 +2053,13 @@ class TestBoxcox_llf:
     def test_axis(self, xp):
         data = xp.asarray([[100, 200], [300, 400]])
         llf_axis_0 = stats.boxcox_llf(1, data, axis=0)
-        llf_0 = xp.asarray([
+        llf_0 = xp.stack([
             stats.boxcox_llf(1, data[:, 0]),
             stats.boxcox_llf(1, data[:, 1]),
         ])
         xp_assert_close(llf_axis_0, llf_0)
         llf_axis_1 = stats.boxcox_llf(1, data, axis=1)
-        llf_1 = xp.asarray([
+        llf_1 = xp.stack([
             stats.boxcox_llf(1, data[0, :]),
             stats.boxcox_llf(1, data[1, :]),
         ])
@@ -2732,11 +2732,11 @@ class TestCircFuncs:
 
         res = circfunc(x, high=360, axis=1)
         ref = [circfunc(x[i, :], high=360) for i in range(x.shape[0])]
-        xp_assert_close(res, xp.asarray(ref))
+        xp_assert_close(res, xp.stack(ref))
 
         res = circfunc(x, high=360, axis=0)
         ref = [circfunc(x[:, i], high=360) for i in range(x.shape[1])]
-        xp_assert_close(res, xp.asarray(ref))
+        xp_assert_close(res, xp.stack(ref))
 
     @pytest.mark.parametrize("test_func,expected",
                              [(stats.circmean, 0.167690146),

scipy/version.py

@@ -2,10 +2,10 @@
 """
 Module to expose more detailed version info for the installed `scipy`
 """
-version = "1.16.0rc2"
+version = "1.16.2"
 full_version = version
 short_version = version.split('.dev')[0]
-git_revision = "e0b3e3ff7842025c64b134de740680b8ba9951b9"
+git_revision = "b1296b9b4393e251511fe8fdd3e58c22a1124899"
 release = 'dev' not in version and '+' not in version
 
 if not release:

{scipy-1.16.0rc2.dist-info → scipy-1.16.2.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: scipy
-Version: 1.16.0rc2
+Version: 1.16.2
 Summary: Fundamental algorithms for scientific computing in Python
 Maintainer-Email: SciPy Developers <scipy-dev@python.org>
 License: Copyright (c) 2001-2002 Enthought, Inc. 2003, SciPy Developers.
@@ -948,6 +948,7 @@ Classifier: Programming Language :: Python :: 3
 Classifier: Programming Language :: Python :: 3.11
 Classifier: Programming Language :: Python :: 3.12
 Classifier: Programming Language :: Python :: 3.13
+Classifier: Programming Language :: Python :: 3.14
 Classifier: Topic :: Software Development :: Libraries
 Classifier: Topic :: Scientific/Engineering
 Classifier: Operating System :: Microsoft :: Windows
@@ -963,7 +964,7 @@ Project-URL: tracker, https://github.com/scipy/scipy/issues
 Requires-Python: >=3.11
 Requires-Dist: numpy<2.6,>=1.25.2
 Provides-Extra: test
-Requires-Dist: pytest; extra == "test"
+Requires-Dist: pytest>=8.0.0; extra == "test"
 Requires-Dist: pytest-cov; extra == "test"
 Requires-Dist: pytest-timeout; extra == "test"
 Requires-Dist: pytest-xdist; extra == "test"