scipy 1.15.3__cp313-cp313-win_amd64.whl → 1.16.0rc2__cp313-cp313-win_amd64.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- scipy/__config__.py +8 -8
- scipy/__init__.py +3 -6
- scipy/_cyutility.cp313-win_amd64.dll.a +0 -0
- scipy/_cyutility.cp313-win_amd64.pyd +0 -0
- scipy/_lib/_array_api.py +486 -161
- scipy/_lib/_array_api_compat_vendor.py +9 -0
- scipy/_lib/_bunch.py +4 -0
- scipy/_lib/_ccallback_c.cp313-win_amd64.dll.a +0 -0
- scipy/_lib/_ccallback_c.cp313-win_amd64.pyd +0 -0
- scipy/_lib/_docscrape.py +1 -1
- scipy/_lib/_elementwise_iterative_method.py +15 -26
- scipy/_lib/_fpumode.cp313-win_amd64.dll.a +0 -0
- scipy/_lib/_fpumode.cp313-win_amd64.pyd +0 -0
- scipy/_lib/_sparse.py +41 -0
- scipy/_lib/_test_ccallback.cp313-win_amd64.dll.a +0 -0
- scipy/_lib/_test_ccallback.cp313-win_amd64.pyd +0 -0
- scipy/_lib/_test_deprecation_call.cp313-win_amd64.dll.a +0 -0
- scipy/_lib/_test_deprecation_call.cp313-win_amd64.pyd +0 -0
- scipy/_lib/_test_deprecation_def.cp313-win_amd64.dll.a +0 -0
- scipy/_lib/_test_deprecation_def.cp313-win_amd64.pyd +0 -0
- scipy/_lib/_testutils.py +6 -2
- scipy/_lib/_uarray/_uarray.cp313-win_amd64.dll.a +0 -0
- scipy/_lib/_uarray/_uarray.cp313-win_amd64.pyd +0 -0
- scipy/_lib/_util.py +222 -125
- scipy/_lib/array_api_compat/__init__.py +4 -4
- scipy/_lib/array_api_compat/_internal.py +19 -6
- scipy/_lib/array_api_compat/common/__init__.py +1 -1
- scipy/_lib/array_api_compat/common/_aliases.py +365 -193
- scipy/_lib/array_api_compat/common/_fft.py +94 -64
- scipy/_lib/array_api_compat/common/_helpers.py +413 -180
- scipy/_lib/array_api_compat/common/_linalg.py +116 -40
- scipy/_lib/array_api_compat/common/_typing.py +179 -10
- scipy/_lib/array_api_compat/cupy/__init__.py +1 -4
- scipy/_lib/array_api_compat/cupy/_aliases.py +61 -41
- scipy/_lib/array_api_compat/cupy/_info.py +16 -6
- scipy/_lib/array_api_compat/cupy/_typing.py +24 -39
- scipy/_lib/array_api_compat/dask/array/__init__.py +6 -3
- scipy/_lib/array_api_compat/dask/array/_aliases.py +267 -108
- scipy/_lib/array_api_compat/dask/array/_info.py +105 -34
- scipy/_lib/array_api_compat/dask/array/fft.py +5 -8
- scipy/_lib/array_api_compat/dask/array/linalg.py +21 -22
- scipy/_lib/array_api_compat/numpy/__init__.py +13 -15
- scipy/_lib/array_api_compat/numpy/_aliases.py +98 -49
- scipy/_lib/array_api_compat/numpy/_info.py +36 -16
- scipy/_lib/array_api_compat/numpy/_typing.py +27 -43
- scipy/_lib/array_api_compat/numpy/fft.py +11 -5
- scipy/_lib/array_api_compat/numpy/linalg.py +75 -22
- scipy/_lib/array_api_compat/torch/__init__.py +3 -5
- scipy/_lib/array_api_compat/torch/_aliases.py +262 -159
- scipy/_lib/array_api_compat/torch/_info.py +27 -16
- scipy/_lib/array_api_compat/torch/_typing.py +3 -0
- scipy/_lib/array_api_compat/torch/fft.py +17 -18
- scipy/_lib/array_api_compat/torch/linalg.py +16 -16
- scipy/_lib/array_api_extra/__init__.py +26 -3
- scipy/_lib/array_api_extra/_delegation.py +171 -0
- scipy/_lib/array_api_extra/_lib/__init__.py +1 -0
- scipy/_lib/array_api_extra/_lib/_at.py +463 -0
- scipy/_lib/array_api_extra/_lib/_backends.py +46 -0
- scipy/_lib/array_api_extra/_lib/_funcs.py +937 -0
- scipy/_lib/array_api_extra/_lib/_lazy.py +357 -0
- scipy/_lib/array_api_extra/_lib/_testing.py +278 -0
- scipy/_lib/array_api_extra/_lib/_utils/__init__.py +1 -0
- scipy/_lib/array_api_extra/_lib/_utils/_compat.py +74 -0
- scipy/_lib/array_api_extra/_lib/_utils/_compat.pyi +45 -0
- scipy/_lib/array_api_extra/_lib/_utils/_helpers.py +559 -0
- scipy/_lib/array_api_extra/_lib/_utils/_typing.py +10 -0
- scipy/_lib/array_api_extra/_lib/_utils/_typing.pyi +105 -0
- scipy/_lib/array_api_extra/testing.py +359 -0
- scipy/_lib/decorator.py +2 -2
- scipy/_lib/doccer.py +1 -7
- scipy/_lib/messagestream.cp313-win_amd64.dll.a +0 -0
- scipy/_lib/messagestream.cp313-win_amd64.pyd +0 -0
- scipy/_lib/pyprima/__init__.py +212 -0
- scipy/_lib/pyprima/cobyla/__init__.py +0 -0
- scipy/_lib/pyprima/cobyla/cobyla.py +559 -0
- scipy/_lib/pyprima/cobyla/cobylb.py +714 -0
- scipy/_lib/pyprima/cobyla/geometry.py +226 -0
- scipy/_lib/pyprima/cobyla/initialize.py +215 -0
- scipy/_lib/pyprima/cobyla/trustregion.py +492 -0
- scipy/_lib/pyprima/cobyla/update.py +289 -0
- scipy/_lib/pyprima/common/__init__.py +0 -0
- scipy/_lib/pyprima/common/_bounds.py +34 -0
- scipy/_lib/pyprima/common/_linear_constraints.py +46 -0
- scipy/_lib/pyprima/common/_nonlinear_constraints.py +54 -0
- scipy/_lib/pyprima/common/_project.py +173 -0
- scipy/_lib/pyprima/common/checkbreak.py +93 -0
- scipy/_lib/pyprima/common/consts.py +47 -0
- scipy/_lib/pyprima/common/evaluate.py +99 -0
- scipy/_lib/pyprima/common/history.py +38 -0
- scipy/_lib/pyprima/common/infos.py +30 -0
- scipy/_lib/pyprima/common/linalg.py +435 -0
- scipy/_lib/pyprima/common/message.py +290 -0
- scipy/_lib/pyprima/common/powalg.py +131 -0
- scipy/_lib/pyprima/common/preproc.py +277 -0
- scipy/_lib/pyprima/common/present.py +5 -0
- scipy/_lib/pyprima/common/ratio.py +54 -0
- scipy/_lib/pyprima/common/redrho.py +47 -0
- scipy/_lib/pyprima/common/selectx.py +296 -0
- scipy/_lib/tests/test__util.py +105 -121
- scipy/_lib/tests/test_array_api.py +166 -35
- scipy/_lib/tests/test_bunch.py +7 -0
- scipy/_lib/tests/test_ccallback.py +2 -10
- scipy/_lib/tests/test_public_api.py +13 -0
- scipy/cluster/_hierarchy.cp313-win_amd64.dll.a +0 -0
- scipy/cluster/_hierarchy.cp313-win_amd64.pyd +0 -0
- scipy/cluster/_optimal_leaf_ordering.cp313-win_amd64.dll.a +0 -0
- scipy/cluster/_optimal_leaf_ordering.cp313-win_amd64.pyd +0 -0
- scipy/cluster/_vq.cp313-win_amd64.dll.a +0 -0
- scipy/cluster/_vq.cp313-win_amd64.pyd +0 -0
- scipy/cluster/hierarchy.py +393 -223
- scipy/cluster/tests/test_hierarchy.py +273 -335
- scipy/cluster/tests/test_vq.py +45 -61
- scipy/cluster/vq.py +39 -35
- scipy/conftest.py +263 -157
- scipy/constants/_constants.py +4 -1
- scipy/constants/tests/test_codata.py +2 -2
- scipy/constants/tests/test_constants.py +11 -18
- scipy/datasets/_download_all.py +15 -1
- scipy/datasets/_fetchers.py +7 -1
- scipy/datasets/_utils.py +1 -1
- scipy/differentiate/_differentiate.py +25 -25
- scipy/differentiate/tests/test_differentiate.py +24 -25
- scipy/fft/_basic.py +20 -0
- scipy/fft/_helper.py +3 -34
- scipy/fft/_pocketfft/helper.py +29 -1
- scipy/fft/_pocketfft/pypocketfft.cp313-win_amd64.dll.a +0 -0
- scipy/fft/_pocketfft/pypocketfft.cp313-win_amd64.pyd +0 -0
- scipy/fft/_pocketfft/tests/test_basic.py +2 -4
- scipy/fft/_pocketfft/tests/test_real_transforms.py +4 -4
- scipy/fft/_realtransforms.py +13 -0
- scipy/fft/tests/test_basic.py +27 -25
- scipy/fft/tests/test_fftlog.py +16 -7
- scipy/fft/tests/test_helper.py +18 -34
- scipy/fft/tests/test_real_transforms.py +8 -10
- scipy/fftpack/convolve.cp313-win_amd64.dll.a +0 -0
- scipy/fftpack/convolve.cp313-win_amd64.pyd +0 -0
- scipy/fftpack/tests/test_basic.py +2 -4
- scipy/fftpack/tests/test_real_transforms.py +8 -9
- scipy/integrate/_bvp.py +9 -3
- scipy/integrate/_cubature.py +3 -2
- scipy/integrate/_dop.cp313-win_amd64.dll.a +0 -0
- scipy/integrate/_dop.cp313-win_amd64.pyd +0 -0
- scipy/integrate/_lsoda.cp313-win_amd64.dll.a +0 -0
- scipy/integrate/_lsoda.cp313-win_amd64.pyd +0 -0
- scipy/integrate/_ode.py +9 -2
- scipy/integrate/_odepack.cp313-win_amd64.dll.a +0 -0
- scipy/integrate/_odepack.cp313-win_amd64.pyd +0 -0
- scipy/integrate/_quad_vec.py +21 -29
- scipy/integrate/_quadpack.cp313-win_amd64.dll.a +0 -0
- scipy/integrate/_quadpack.cp313-win_amd64.pyd +0 -0
- scipy/integrate/_quadpack_py.py +11 -7
- scipy/integrate/_quadrature.py +3 -3
- scipy/integrate/_rules/_base.py +2 -2
- scipy/integrate/_tanhsinh.py +48 -47
- scipy/integrate/_test_multivariate.cp313-win_amd64.dll.a +0 -0
- scipy/integrate/_test_multivariate.cp313-win_amd64.pyd +0 -0
- scipy/integrate/_test_odeint_banded.cp313-win_amd64.dll.a +0 -0
- scipy/integrate/_test_odeint_banded.cp313-win_amd64.pyd +0 -0
- scipy/integrate/_vode.cp313-win_amd64.dll.a +0 -0
- scipy/integrate/_vode.cp313-win_amd64.pyd +0 -0
- scipy/integrate/tests/test__quad_vec.py +0 -6
- scipy/integrate/tests/test_banded_ode_solvers.py +85 -0
- scipy/integrate/tests/test_cubature.py +21 -35
- scipy/integrate/tests/test_quadrature.py +6 -8
- scipy/integrate/tests/test_tanhsinh.py +56 -48
- scipy/interpolate/__init__.py +70 -58
- scipy/interpolate/_bary_rational.py +22 -22
- scipy/interpolate/_bsplines.py +119 -66
- scipy/interpolate/_cubic.py +65 -50
- scipy/interpolate/_dfitpack.cp313-win_amd64.dll.a +0 -0
- scipy/interpolate/_dfitpack.cp313-win_amd64.pyd +0 -0
- scipy/interpolate/_dierckx.cp313-win_amd64.dll.a +0 -0
- scipy/interpolate/_dierckx.cp313-win_amd64.pyd +0 -0
- scipy/interpolate/_fitpack.cp313-win_amd64.dll.a +0 -0
- scipy/interpolate/_fitpack.cp313-win_amd64.pyd +0 -0
- scipy/interpolate/_fitpack2.py +9 -6
- scipy/interpolate/_fitpack_impl.py +32 -26
- scipy/interpolate/_fitpack_repro.py +23 -19
- scipy/interpolate/_interpnd.cp313-win_amd64.dll.a +0 -0
- scipy/interpolate/_interpnd.cp313-win_amd64.pyd +0 -0
- scipy/interpolate/_interpolate.py +30 -12
- scipy/interpolate/_ndbspline.py +13 -18
- scipy/interpolate/_ndgriddata.py +5 -8
- scipy/interpolate/_polyint.py +95 -31
- scipy/interpolate/_ppoly.cp313-win_amd64.dll.a +0 -0
- scipy/interpolate/_ppoly.cp313-win_amd64.pyd +0 -0
- scipy/interpolate/_rbf.py +2 -2
- scipy/interpolate/_rbfinterp.py +1 -1
- scipy/interpolate/_rbfinterp_pythran.cp313-win_amd64.dll.a +0 -0
- scipy/interpolate/_rbfinterp_pythran.cp313-win_amd64.pyd +0 -0
- scipy/interpolate/_rgi.py +31 -26
- scipy/interpolate/_rgi_cython.cp313-win_amd64.dll.a +0 -0
- scipy/interpolate/_rgi_cython.cp313-win_amd64.pyd +0 -0
- scipy/interpolate/dfitpack.py +0 -20
- scipy/interpolate/interpnd.py +1 -2
- scipy/interpolate/tests/test_bary_rational.py +2 -2
- scipy/interpolate/tests/test_bsplines.py +97 -1
- scipy/interpolate/tests/test_fitpack2.py +39 -1
- scipy/interpolate/tests/test_interpnd.py +32 -20
- scipy/interpolate/tests/test_interpolate.py +48 -4
- scipy/interpolate/tests/test_rgi.py +2 -1
- scipy/io/_fast_matrix_market/__init__.py +2 -0
- scipy/io/_fast_matrix_market/_fmm_core.cp313-win_amd64.dll.a +0 -0
- scipy/io/_fast_matrix_market/_fmm_core.cp313-win_amd64.pyd +0 -0
- scipy/io/_harwell_boeing/_fortran_format_parser.py +19 -16
- scipy/io/_harwell_boeing/hb.py +7 -11
- scipy/io/_idl.py +5 -7
- scipy/io/_netcdf.py +15 -5
- scipy/io/_test_fortran.cp313-win_amd64.dll.a +0 -0
- scipy/io/_test_fortran.cp313-win_amd64.pyd +0 -0
- scipy/io/arff/tests/test_arffread.py +3 -3
- scipy/io/matlab/__init__.py +5 -3
- scipy/io/matlab/_mio.py +4 -1
- scipy/io/matlab/_mio5.py +19 -13
- scipy/io/matlab/_mio5_utils.cp313-win_amd64.dll.a +0 -0
- scipy/io/matlab/_mio5_utils.cp313-win_amd64.pyd +0 -0
- scipy/io/matlab/_mio_utils.cp313-win_amd64.dll.a +0 -0
- scipy/io/matlab/_mio_utils.cp313-win_amd64.pyd +0 -0
- scipy/io/matlab/_miobase.py +4 -1
- scipy/io/matlab/_streams.cp313-win_amd64.dll.a +0 -0
- scipy/io/matlab/_streams.cp313-win_amd64.pyd +0 -0
- scipy/io/matlab/tests/test_mio.py +46 -18
- scipy/io/matlab/tests/test_mio_funcs.py +1 -1
- scipy/io/tests/test_mmio.py +7 -1
- scipy/io/tests/test_wavfile.py +41 -0
- scipy/io/wavfile.py +57 -10
- scipy/linalg/_basic.py +113 -86
- scipy/linalg/_cythonized_array_utils.cp313-win_amd64.dll.a +0 -0
- scipy/linalg/_cythonized_array_utils.cp313-win_amd64.pyd +0 -0
- scipy/linalg/_decomp.py +22 -9
- scipy/linalg/_decomp_cholesky.py +28 -13
- scipy/linalg/_decomp_cossin.py +45 -30
- scipy/linalg/_decomp_interpolative.cp313-win_amd64.dll.a +0 -0
- scipy/linalg/_decomp_interpolative.cp313-win_amd64.pyd +0 -0
- scipy/linalg/_decomp_ldl.py +4 -1
- scipy/linalg/_decomp_lu.py +18 -6
- scipy/linalg/_decomp_lu_cython.cp313-win_amd64.dll.a +0 -0
- scipy/linalg/_decomp_lu_cython.cp313-win_amd64.pyd +0 -0
- scipy/linalg/_decomp_polar.py +2 -0
- scipy/linalg/_decomp_qr.py +6 -2
- scipy/linalg/_decomp_qz.py +3 -0
- scipy/linalg/_decomp_schur.py +3 -1
- scipy/linalg/_decomp_svd.py +13 -2
- scipy/linalg/_decomp_update.cp313-win_amd64.dll.a +0 -0
- scipy/linalg/_decomp_update.cp313-win_amd64.pyd +0 -0
- scipy/linalg/_expm_frechet.py +4 -0
- scipy/linalg/_fblas.cp313-win_amd64.dll.a +0 -0
- scipy/linalg/_fblas.cp313-win_amd64.pyd +0 -0
- scipy/linalg/_flapack.cp313-win_amd64.dll.a +0 -0
- scipy/linalg/_flapack.cp313-win_amd64.pyd +0 -0
- scipy/linalg/_linalg_pythran.cp313-win_amd64.dll.a +0 -0
- scipy/linalg/_linalg_pythran.cp313-win_amd64.pyd +0 -0
- scipy/linalg/_matfuncs.py +187 -4
- scipy/linalg/_matfuncs_expm.cp313-win_amd64.dll.a +0 -0
- scipy/linalg/_matfuncs_expm.cp313-win_amd64.pyd +0 -0
- scipy/linalg/_matfuncs_schur_sqrtm.cp313-win_amd64.dll.a +0 -0
- scipy/linalg/_matfuncs_schur_sqrtm.cp313-win_amd64.pyd +0 -0
- scipy/linalg/_matfuncs_sqrtm.py +1 -99
- scipy/linalg/_matfuncs_sqrtm_triu.cp313-win_amd64.dll.a +0 -0
- scipy/linalg/_matfuncs_sqrtm_triu.cp313-win_amd64.pyd +0 -0
- scipy/linalg/_procrustes.py +2 -0
- scipy/linalg/_sketches.py +17 -6
- scipy/linalg/_solve_toeplitz.cp313-win_amd64.dll.a +0 -0
- scipy/linalg/_solve_toeplitz.cp313-win_amd64.pyd +0 -0
- scipy/linalg/_solvers.py +7 -2
- scipy/linalg/_special_matrices.py +26 -36
- scipy/linalg/cython_blas.cp313-win_amd64.dll.a +0 -0
- scipy/linalg/cython_blas.cp313-win_amd64.pyd +0 -0
- scipy/linalg/cython_lapack.cp313-win_amd64.dll.a +0 -0
- scipy/linalg/cython_lapack.cp313-win_amd64.pyd +0 -0
- scipy/linalg/lapack.py +22 -2
- scipy/linalg/tests/_cython_examples/meson.build +7 -0
- scipy/linalg/tests/test_basic.py +31 -16
- scipy/linalg/tests/test_batch.py +588 -0
- scipy/linalg/tests/test_cythonized_array_utils.py +0 -2
- scipy/linalg/tests/test_decomp.py +40 -3
- scipy/linalg/tests/test_decomp_cossin.py +14 -0
- scipy/linalg/tests/test_decomp_ldl.py +1 -1
- scipy/linalg/tests/test_lapack.py +115 -7
- scipy/linalg/tests/test_matfuncs.py +157 -102
- scipy/linalg/tests/test_procrustes.py +0 -7
- scipy/linalg/tests/test_solve_toeplitz.py +1 -1
- scipy/linalg/tests/test_special_matrices.py +1 -5
- scipy/ndimage/__init__.py +1 -0
- scipy/ndimage/_ctest.cp313-win_amd64.dll.a +0 -0
- scipy/ndimage/_ctest.cp313-win_amd64.pyd +0 -0
- scipy/ndimage/_cytest.cp313-win_amd64.dll.a +0 -0
- scipy/ndimage/_cytest.cp313-win_amd64.pyd +0 -0
- scipy/ndimage/_delegators.py +8 -2
- scipy/ndimage/_filters.py +453 -5
- scipy/ndimage/_interpolation.py +36 -6
- scipy/ndimage/_measurements.py +4 -2
- scipy/ndimage/_morphology.py +5 -0
- scipy/ndimage/_nd_image.cp313-win_amd64.dll.a +0 -0
- scipy/ndimage/_nd_image.cp313-win_amd64.pyd +0 -0
- scipy/ndimage/_ni_docstrings.py +5 -1
- scipy/ndimage/_ni_label.cp313-win_amd64.dll.a +0 -0
- scipy/ndimage/_ni_label.cp313-win_amd64.pyd +0 -0
- scipy/ndimage/_ni_support.py +1 -5
- scipy/ndimage/_rank_filter_1d.cp313-win_amd64.dll.a +0 -0
- scipy/ndimage/_rank_filter_1d.cp313-win_amd64.pyd +0 -0
- scipy/ndimage/_support_alternative_backends.py +18 -6
- scipy/ndimage/tests/test_filters.py +370 -259
- scipy/ndimage/tests/test_fourier.py +7 -9
- scipy/ndimage/tests/test_interpolation.py +68 -61
- scipy/ndimage/tests/test_measurements.py +18 -35
- scipy/ndimage/tests/test_morphology.py +143 -131
- scipy/ndimage/tests/test_splines.py +1 -3
- scipy/odr/__odrpack.cp313-win_amd64.dll.a +0 -0
- scipy/odr/__odrpack.cp313-win_amd64.pyd +0 -0
- scipy/optimize/_basinhopping.py +13 -7
- scipy/optimize/_bglu_dense.cp313-win_amd64.dll.a +0 -0
- scipy/optimize/_bglu_dense.cp313-win_amd64.pyd +0 -0
- scipy/optimize/_bracket.py +17 -24
- scipy/optimize/_chandrupatla.py +9 -10
- scipy/optimize/_cobyla_py.py +104 -123
- scipy/optimize/_constraints.py +14 -10
- scipy/optimize/_differentiable_functions.py +371 -230
- scipy/optimize/_differentialevolution.py +4 -3
- scipy/optimize/_direct.cp313-win_amd64.dll.a +0 -0
- scipy/optimize/_direct.cp313-win_amd64.pyd +0 -0
- scipy/optimize/_dual_annealing.py +1 -1
- scipy/optimize/_elementwise.py +1 -4
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- scipy/stats/tests/test_continuous_basic.py +18 -12
- scipy/stats/tests/test_discrete_basic.py +14 -8
- scipy/stats/tests/test_discrete_distns.py +16 -16
- scipy/stats/tests/test_distributions.py +95 -75
- scipy/stats/tests/test_entropy.py +40 -48
- scipy/stats/tests/test_fit.py +4 -3
- scipy/stats/tests/test_hypotests.py +153 -24
- scipy/stats/tests/test_kdeoth.py +109 -41
- scipy/stats/tests/test_marray.py +289 -0
- scipy/stats/tests/test_morestats.py +79 -47
- scipy/stats/tests/test_mstats_basic.py +3 -3
- scipy/stats/tests/test_multivariate.py +434 -83
- scipy/stats/tests/test_qmc.py +13 -10
- scipy/stats/tests/test_quantile.py +199 -0
- scipy/stats/tests/test_rank.py +119 -112
- scipy/stats/tests/test_resampling.py +47 -56
- scipy/stats/tests/test_sampling.py +9 -4
- scipy/stats/tests/test_stats.py +799 -939
- scipy/stats/tests/test_variation.py +8 -6
- scipy/version.py +2 -2
- scipy-1.16.0rc2.dist-info/DELVEWHEEL +2 -0
- {scipy-1.15.3.dist-info → scipy-1.16.0rc2.dist-info}/LICENSE.txt +4 -4
- {scipy-1.15.3.dist-info → scipy-1.16.0rc2.dist-info}/METADATA +11 -11
- {scipy-1.15.3.dist-info → scipy-1.16.0rc2.dist-info}/RECORD +685 -693
- scipy/_lib/array_api_extra/_funcs.py +0 -484
- scipy/_lib/array_api_extra/_typing.py +0 -8
- scipy/interpolate/_bspl.cp313-win_amd64.dll.a +0 -0
- scipy/interpolate/_bspl.cp313-win_amd64.pyd +0 -0
- scipy/optimize/_cobyla.cp313-win_amd64.dll.a +0 -0
- scipy/optimize/_cobyla.cp313-win_amd64.pyd +0 -0
- scipy/optimize/_cython_nnls.cp313-win_amd64.dll.a +0 -0
- scipy/optimize/_cython_nnls.cp313-win_amd64.pyd +0 -0
- scipy/optimize/_slsqp.cp313-win_amd64.dll.a +0 -0
- scipy/optimize/_slsqp.cp313-win_amd64.pyd +0 -0
- scipy/spatial/qhull_src/COPYING.txt +0 -38
- scipy/special/libsf_error_state.dll +0 -0
- scipy/special/libsf_error_state.dll.a +0 -0
- scipy/special/tests/test_log_softmax.py +0 -109
- scipy/special/tests/test_xsf_cuda.py +0 -114
- scipy/special/xsf/binom.h +0 -89
- scipy/special/xsf/cdflib.h +0 -100
- scipy/special/xsf/cephes/airy.h +0 -307
- scipy/special/xsf/cephes/besselpoly.h +0 -51
- scipy/special/xsf/cephes/beta.h +0 -257
- scipy/special/xsf/cephes/cbrt.h +0 -131
- scipy/special/xsf/cephes/chbevl.h +0 -85
- scipy/special/xsf/cephes/chdtr.h +0 -193
- scipy/special/xsf/cephes/const.h +0 -87
- scipy/special/xsf/cephes/ellie.h +0 -293
- scipy/special/xsf/cephes/ellik.h +0 -251
- scipy/special/xsf/cephes/ellpe.h +0 -107
- scipy/special/xsf/cephes/ellpk.h +0 -117
- scipy/special/xsf/cephes/expn.h +0 -260
- scipy/special/xsf/cephes/gamma.h +0 -398
- scipy/special/xsf/cephes/hyp2f1.h +0 -596
- scipy/special/xsf/cephes/hyperg.h +0 -361
- scipy/special/xsf/cephes/i0.h +0 -149
- scipy/special/xsf/cephes/i1.h +0 -158
- scipy/special/xsf/cephes/igam.h +0 -421
- scipy/special/xsf/cephes/igam_asymp_coeff.h +0 -195
- scipy/special/xsf/cephes/igami.h +0 -313
- scipy/special/xsf/cephes/j0.h +0 -225
- scipy/special/xsf/cephes/j1.h +0 -198
- scipy/special/xsf/cephes/jv.h +0 -715
- scipy/special/xsf/cephes/k0.h +0 -164
- scipy/special/xsf/cephes/k1.h +0 -163
- scipy/special/xsf/cephes/kn.h +0 -243
- scipy/special/xsf/cephes/lanczos.h +0 -112
- scipy/special/xsf/cephes/ndtr.h +0 -275
- scipy/special/xsf/cephes/poch.h +0 -85
- scipy/special/xsf/cephes/polevl.h +0 -167
- scipy/special/xsf/cephes/psi.h +0 -194
- scipy/special/xsf/cephes/rgamma.h +0 -111
- scipy/special/xsf/cephes/scipy_iv.h +0 -811
- scipy/special/xsf/cephes/shichi.h +0 -248
- scipy/special/xsf/cephes/sici.h +0 -224
- scipy/special/xsf/cephes/sindg.h +0 -221
- scipy/special/xsf/cephes/tandg.h +0 -139
- scipy/special/xsf/cephes/trig.h +0 -58
- scipy/special/xsf/cephes/unity.h +0 -186
- scipy/special/xsf/cephes/zeta.h +0 -172
- scipy/special/xsf/config.h +0 -304
- scipy/special/xsf/digamma.h +0 -205
- scipy/special/xsf/error.h +0 -57
- scipy/special/xsf/evalpoly.h +0 -47
- scipy/special/xsf/expint.h +0 -266
- scipy/special/xsf/hyp2f1.h +0 -694
- scipy/special/xsf/iv_ratio.h +0 -173
- scipy/special/xsf/lambertw.h +0 -150
- scipy/special/xsf/loggamma.h +0 -163
- scipy/special/xsf/sici.h +0 -200
- scipy/special/xsf/tools.h +0 -427
- scipy/special/xsf/trig.h +0 -164
- scipy/special/xsf/wright_bessel.h +0 -843
- scipy/special/xsf/zlog1.h +0 -35
- scipy/stats/_mvn.cp313-win_amd64.dll.a +0 -0
- scipy/stats/_mvn.cp313-win_amd64.pyd +0 -0
- scipy-1.15.3.dist-info/DELVEWHEEL +0 -2
- /scipy-1.15.3-cp313-cp313-win_amd64.whl → /scipy-1.16.0rc2-cp313-cp313-win_amd64.whl +0 -0
- {scipy-1.15.3.dist-info → scipy-1.16.0rc2.dist-info}/WHEEL +0 -0
scipy/stats/tests/test_qmc.py
CHANGED
@@ -4,7 +4,7 @@ from itertools import combinations, product
|
|
4
4
|
|
5
5
|
import pytest
|
6
6
|
import numpy as np
|
7
|
-
from numpy.testing import (assert_allclose, assert_equal, assert_array_equal,
|
7
|
+
from numpy.testing import (assert_allclose, assert_equal, assert_array_equal,
|
8
8
|
assert_array_less)
|
9
9
|
|
10
10
|
from scipy.spatial import distance
|
@@ -144,6 +144,7 @@ class TestUtils:
|
|
144
144
|
with pytest.raises(ValueError, match=r"'toto' is not a valid ..."):
|
145
145
|
qmc.discrepancy(sample, method="toto")
|
146
146
|
|
147
|
+
@pytest.mark.thread_unsafe
|
147
148
|
def test_discrepancy_parallel(self, monkeypatch):
|
148
149
|
sample = np.array([[2, 1, 1, 2, 2, 2],
|
149
150
|
[1, 2, 2, 2, 2, 2],
|
@@ -228,6 +229,7 @@ class TestUtils:
|
|
228
229
|
reason="minimum_spanning_tree ignores zero distances (#18892)",
|
229
230
|
strict=True,
|
230
231
|
)
|
232
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+
@pytest.mark.thread_unsafe
|
231
233
|
def test_geometric_discrepancy_mst_with_zero_distances(self):
|
232
234
|
sample = np.array([[0, 0], [0, 0], [0, 1]])
|
233
235
|
assert_allclose(qmc.geometric_discrepancy(sample, method='mst'), 0.5)
|
@@ -600,6 +602,7 @@ class QMCEngineTests:
|
|
600
602
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None,
|
601
603
|
),
|
602
604
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)
|
605
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+
@pytest.mark.thread_unsafe
|
603
606
|
def test_reset(self, scramble, rng):
|
604
607
|
engine = self.engine(d=2, scramble=scramble, rng=rng)
|
605
608
|
ref_sample = engine.random(n=8)
|
@@ -951,8 +954,8 @@ class TestPoisson(QMCEngineTests):
|
|
951
954
|
sample = engine.random(30)
|
952
955
|
|
953
956
|
for point in sample:
|
954
|
-
assert_array_less(point, u_bounds)
|
955
|
-
assert_array_less(l_bounds, point)
|
957
|
+
assert_array_less(point, u_bounds)
|
958
|
+
assert_array_less(l_bounds, point)
|
956
959
|
|
957
960
|
@pytest.mark.parametrize("u_bounds", [[-1, -2, -1], [1, 2, 1]])
|
958
961
|
def test_sample_inside_upper_bounds(self, u_bounds):
|
@@ -964,15 +967,15 @@ class TestPoisson(QMCEngineTests):
|
|
964
967
|
sample = engine.random(30)
|
965
968
|
|
966
969
|
for point in sample:
|
967
|
-
assert_array_less(point, u_bounds)
|
968
|
-
assert_array_less(l_bounds, point)
|
970
|
+
assert_array_less(point, u_bounds)
|
971
|
+
assert_array_less(l_bounds, point)
|
969
972
|
|
970
973
|
def test_inconsistent_bound_value(self):
|
971
974
|
radius = 0.2
|
972
975
|
l_bounds=[3, 2, 1]
|
973
976
|
u_bounds=[-1, -2, -1]
|
974
977
|
with pytest.raises(
|
975
|
-
ValueError,
|
978
|
+
ValueError,
|
976
979
|
match="Bounds are not consistent 'l_bounds' < 'u_bounds'"):
|
977
980
|
self.qmce(d=3, radius=radius, l_bounds=l_bounds, u_bounds=u_bounds)
|
978
981
|
|
@@ -981,14 +984,14 @@ class TestPoisson(QMCEngineTests):
|
|
981
984
|
def test_inconsistent_bounds(self, u_bounds, l_bounds):
|
982
985
|
radius = 0.2
|
983
986
|
with pytest.raises(
|
984
|
-
ValueError,
|
985
|
-
match="'l_bounds' and 'u_bounds' must be broadcastable and respect"
|
987
|
+
ValueError,
|
988
|
+
match="'l_bounds' and 'u_bounds' must be broadcastable and respect"
|
986
989
|
" the sample dimension"):
|
987
990
|
self.qmce(
|
988
|
-
d=3, radius=radius,
|
991
|
+
d=3, radius=radius,
|
989
992
|
l_bounds=l_bounds, u_bounds=u_bounds
|
990
993
|
)
|
991
|
-
|
994
|
+
|
992
995
|
def test_raises(self):
|
993
996
|
message = r"'toto' is not a valid hypersphere sampling"
|
994
997
|
with pytest.raises(ValueError, match=message):
|
@@ -0,0 +1,199 @@
|
|
1
|
+
import pytest
|
2
|
+
import numpy as np
|
3
|
+
|
4
|
+
from scipy import stats
|
5
|
+
from scipy._lib._array_api import xp_default_dtype, is_numpy, is_torch, SCIPY_ARRAY_API
|
6
|
+
from scipy._lib._array_api_no_0d import xp_assert_close, xp_assert_equal
|
7
|
+
from scipy._lib._util import _apply_over_batch
|
8
|
+
|
9
|
+
skip_xp_backends = pytest.mark.skip_xp_backends
|
10
|
+
|
11
|
+
|
12
|
+
@_apply_over_batch(('x', 1), ('p', 1))
|
13
|
+
def quantile_reference_last_axis(x, p, nan_policy, method):
|
14
|
+
if nan_policy == 'omit':
|
15
|
+
x = x[~np.isnan(x)]
|
16
|
+
p_mask = np.isnan(p)
|
17
|
+
p = p.copy()
|
18
|
+
p[p_mask] = 0.5
|
19
|
+
if method == 'harrell-davis':
|
20
|
+
# hdquantiles returns masked element if length along axis is 1 (bug)
|
21
|
+
res = (np.full_like(p, x[0]) if x.size == 1
|
22
|
+
else stats.mstats.hdquantiles(x, p).data)
|
23
|
+
if nan_policy == 'propagate' and np.any(np.isnan(x)):
|
24
|
+
res[:] = np.nan
|
25
|
+
else:
|
26
|
+
res = np.quantile(x, p)
|
27
|
+
res[p_mask] = np.nan
|
28
|
+
return res
|
29
|
+
|
30
|
+
|
31
|
+
def quantile_reference(x, p, *, axis, nan_policy, keepdims, method):
|
32
|
+
x, p = np.moveaxis(x, axis, -1), np.moveaxis(p, axis, -1)
|
33
|
+
res = quantile_reference_last_axis(x, p, nan_policy, method)
|
34
|
+
res = np.moveaxis(res, -1, axis)
|
35
|
+
if not keepdims:
|
36
|
+
res = np.squeeze(res, axis=axis)
|
37
|
+
return res
|
38
|
+
|
39
|
+
|
40
|
+
@skip_xp_backends('dask.array', reason="No take_along_axis yet.")
|
41
|
+
@skip_xp_backends('jax.numpy', reason="No mutation.")
|
42
|
+
class TestQuantile:
|
43
|
+
|
44
|
+
def test_input_validation(self, xp):
|
45
|
+
x = xp.asarray([1, 2, 3])
|
46
|
+
p = xp.asarray(0.5)
|
47
|
+
|
48
|
+
message = "`x` must have real dtype."
|
49
|
+
with pytest.raises(ValueError, match=message):
|
50
|
+
stats.quantile(xp.asarray([True, False]), p)
|
51
|
+
with pytest.raises(ValueError):
|
52
|
+
stats.quantile(xp.asarray([1+1j, 2]), p)
|
53
|
+
|
54
|
+
message = "`p` must have real floating dtype."
|
55
|
+
with pytest.raises(ValueError, match=message):
|
56
|
+
stats.quantile(x, xp.asarray([0, 1]))
|
57
|
+
|
58
|
+
message = "`axis` must be an integer or None."
|
59
|
+
with pytest.raises(ValueError, match=message):
|
60
|
+
stats.quantile(x, p, axis=0.5)
|
61
|
+
with pytest.raises(ValueError, match=message):
|
62
|
+
stats.quantile(x, p, axis=(0, -1))
|
63
|
+
|
64
|
+
message = "`axis` is not compatible with the shapes of the inputs."
|
65
|
+
with pytest.raises(ValueError, match=message):
|
66
|
+
stats.quantile(x, p, axis=2)
|
67
|
+
|
68
|
+
message = "The input contains nan values"
|
69
|
+
with pytest.raises(ValueError, match=message):
|
70
|
+
stats.quantile(xp.asarray([xp.nan, 1, 2]), p, nan_policy='raise')
|
71
|
+
|
72
|
+
message = "method` must be one of..."
|
73
|
+
with pytest.raises(ValueError, match=message):
|
74
|
+
stats.quantile(x, p, method='a duck')
|
75
|
+
|
76
|
+
message = "If specified, `keepdims` must be True or False."
|
77
|
+
with pytest.raises(ValueError, match=message):
|
78
|
+
stats.quantile(x, p, keepdims=42)
|
79
|
+
|
80
|
+
message = "`keepdims` may be False only if the length of `p` along `axis` is 1."
|
81
|
+
with pytest.raises(ValueError, match=message):
|
82
|
+
stats.quantile(x, xp.asarray([0.5, 0.6]), keepdims=False)
|
83
|
+
|
84
|
+
@pytest.mark.parametrize('method',
|
85
|
+
['inverted_cdf', 'averaged_inverted_cdf', 'closest_observation',
|
86
|
+
'hazen', 'interpolated_inverted_cdf', 'linear',
|
87
|
+
'median_unbiased', 'normal_unbiased', 'weibull'])
|
88
|
+
@pytest.mark.parametrize('shape_x, shape_p, axis',
|
89
|
+
[(10, None, -1), (10, 10, -1), (10, (2, 3), -1),
|
90
|
+
((10, 2), None, 0), ((10, 2), None, 0),])
|
91
|
+
def test_against_numpy(self, method, shape_x, shape_p, axis, xp):
|
92
|
+
dtype = xp_default_dtype(xp)
|
93
|
+
rng = np.random.default_rng(23458924568734956)
|
94
|
+
x = rng.random(size=shape_x)
|
95
|
+
p = rng.random(size=shape_p)
|
96
|
+
ref = np.quantile(x, p, method=method, axis=axis)
|
97
|
+
|
98
|
+
x, p = xp.asarray(x, dtype=dtype), xp.asarray(p, dtype=dtype)
|
99
|
+
res = stats.quantile(x, p, method=method, axis=axis)
|
100
|
+
|
101
|
+
xp_assert_close(res, xp.asarray(ref, dtype=dtype))
|
102
|
+
|
103
|
+
@skip_xp_backends(cpu_only=True, reason="PyTorch doesn't have `betainc`.")
|
104
|
+
@pytest.mark.parametrize('axis', [0, 1])
|
105
|
+
@pytest.mark.parametrize('keepdims', [False, True])
|
106
|
+
@pytest.mark.parametrize('nan_policy', ['omit', 'propagate', 'marray'])
|
107
|
+
@pytest.mark.parametrize('dtype', ['float32', 'float64'])
|
108
|
+
@pytest.mark.parametrize('method', ['linear', 'harrell-davis'])
|
109
|
+
def test_against_reference(self, axis, keepdims, nan_policy, dtype, method, xp):
|
110
|
+
rng = np.random.default_rng(23458924568734956)
|
111
|
+
shape = (5, 6)
|
112
|
+
x = rng.random(size=shape).astype(dtype)
|
113
|
+
p = rng.random(size=shape).astype(dtype)
|
114
|
+
mask = rng.random(size=shape) > 0.8
|
115
|
+
assert np.any(mask)
|
116
|
+
x[mask] = np.nan
|
117
|
+
if not keepdims:
|
118
|
+
p = np.mean(p, axis=axis, keepdims=True)
|
119
|
+
|
120
|
+
# inject p = 0 and p = 1 to test edge cases
|
121
|
+
# Currently would fail with CuPy/JAX (cupy/cupy#8934, jax-ml/jax#21900);
|
122
|
+
# remove the `if` when those are resolved.
|
123
|
+
if is_numpy(xp):
|
124
|
+
p0 = p.ravel()
|
125
|
+
p0[1] = 0.
|
126
|
+
p0[-2] = 1.
|
127
|
+
|
128
|
+
dtype = getattr(xp, dtype)
|
129
|
+
|
130
|
+
if nan_policy == 'marray':
|
131
|
+
if method == 'harrell-davis':
|
132
|
+
pytest.skip("Needs gh-22490")
|
133
|
+
if is_torch(xp):
|
134
|
+
pytest.skip("sum_cpu not implemented for UInt64, see "
|
135
|
+
"data-apis/array-api-compat#242")
|
136
|
+
if not SCIPY_ARRAY_API:
|
137
|
+
pytest.skip("MArray is only available if SCIPY_ARRAY_API=1")
|
138
|
+
marray = pytest.importorskip('marray')
|
139
|
+
kwargs = dict(axis=axis, keepdims=keepdims, method=method)
|
140
|
+
mxp = marray._get_namespace(xp)
|
141
|
+
x_mp = mxp.asarray(x, mask=mask)
|
142
|
+
res = stats.quantile(x_mp, mxp.asarray(p), **kwargs)
|
143
|
+
ref = quantile_reference(x, p, nan_policy='omit', **kwargs)
|
144
|
+
xp_assert_close(res.data, xp.asarray(ref, dtype=dtype))
|
145
|
+
return
|
146
|
+
|
147
|
+
kwargs = dict(axis=axis, keepdims=keepdims,
|
148
|
+
nan_policy=nan_policy, method=method)
|
149
|
+
res = stats.quantile(xp.asarray(x), xp.asarray(p), **kwargs)
|
150
|
+
ref = quantile_reference(x, p, **kwargs)
|
151
|
+
xp_assert_close(res, xp.asarray(ref, dtype=dtype))
|
152
|
+
|
153
|
+
def test_integer_input_output_dtype(self, xp):
|
154
|
+
res = stats.quantile(xp.arange(10, dtype=xp.int64), 0.5)
|
155
|
+
assert res.dtype == xp_default_dtype(xp)
|
156
|
+
|
157
|
+
@pytest.mark.parametrize('x, p, ref, kwargs',
|
158
|
+
[([], 0.5, np.nan, {}),
|
159
|
+
([1, 2, 3], [-1, 0, 1, 1.5, np.nan], [np.nan, 1, 3, np.nan, np.nan], {}),
|
160
|
+
([1, 2, 3], [], [], {}),
|
161
|
+
([[np.nan, 2]], 0.5, [np.nan, 2], {'nan_policy': 'omit'}),
|
162
|
+
([[], []], 0.5, np.full(2, np.nan), {'axis': -1}),
|
163
|
+
([[], []], 0.5, np.zeros((0,)), {'axis': 0, 'keepdims': False}),
|
164
|
+
([[], []], 0.5, np.zeros((1, 0)), {'axis': 0, 'keepdims': True}),
|
165
|
+
([], [0.5, 0.6], np.full(2, np.nan), {}),
|
166
|
+
(np.arange(1, 28).reshape((3, 3, 3)), 0.5, [[[14.]]],
|
167
|
+
{'axis': None, 'keepdims': True}),
|
168
|
+
([[1, 2], [3, 4]], [0.25, 0.5, 0.75], [[1.75, 2.5, 3.25]],
|
169
|
+
{'axis': None, 'keepdims': True}),])
|
170
|
+
def test_edge_cases(self, x, p, ref, kwargs, xp):
|
171
|
+
default_dtype = xp_default_dtype(xp)
|
172
|
+
x, p, ref = xp.asarray(x), xp.asarray(p), xp.asarray(ref, dtype=default_dtype)
|
173
|
+
res = stats.quantile(x, p, **kwargs)
|
174
|
+
xp_assert_equal(res, ref)
|
175
|
+
|
176
|
+
@pytest.mark.parametrize('axis', [0, 1, 2])
|
177
|
+
@pytest.mark.parametrize('keepdims', [False, True])
|
178
|
+
def test_size_0(self, axis, keepdims, xp):
|
179
|
+
shape = [3, 4, 0]
|
180
|
+
out_shape = shape.copy()
|
181
|
+
if keepdims:
|
182
|
+
out_shape[axis] = 1
|
183
|
+
else:
|
184
|
+
out_shape.pop(axis)
|
185
|
+
res = stats.quantile(xp.zeros(tuple(shape)), 0.5, axis=axis, keepdims=keepdims)
|
186
|
+
assert res.shape == tuple(out_shape)
|
187
|
+
|
188
|
+
@pytest.mark.parametrize('method',
|
189
|
+
['inverted_cdf', 'averaged_inverted_cdf', 'closest_observation'])
|
190
|
+
def test_transition(self, method, xp):
|
191
|
+
# test that values of discontinuous estimators are correct when
|
192
|
+
# p*n + m - 1 is integral.
|
193
|
+
if method == 'closest_observation' and np.__version__ < '2.0.1':
|
194
|
+
pytest.skip('Bug in np.quantile (numpy/numpy#26656) fixed in 2.0.1')
|
195
|
+
x = np.arange(8., dtype=np.float64)
|
196
|
+
p = np.arange(0, 1.0625, 0.0625)
|
197
|
+
res = stats.quantile(xp.asarray(x), xp.asarray(p), method=method)
|
198
|
+
ref = np.quantile(x, p, method=method)
|
199
|
+
xp_assert_equal(res, xp.asarray(ref, dtype=xp.float64))
|
scipy/stats/tests/test_rank.py
CHANGED
@@ -2,10 +2,10 @@ import numpy as np
|
|
2
2
|
from numpy.testing import assert_equal, assert_array_equal
|
3
3
|
import pytest
|
4
4
|
|
5
|
+
from scipy import stats
|
5
6
|
from scipy.conftest import skip_xp_invalid_arg
|
6
7
|
from scipy.stats import rankdata, tiecorrect
|
7
|
-
from scipy._lib.
|
8
|
-
|
8
|
+
from scipy._lib._array_api import xp_assert_equal, make_xp_test_case
|
9
9
|
|
10
10
|
class TestTieCorrect:
|
11
11
|
|
@@ -73,63 +73,69 @@ class TestTieCorrect:
|
|
73
73
|
assert_equal(out, 1.0 - k * (ntie**3 - ntie) / float(n**3 - n))
|
74
74
|
|
75
75
|
|
76
|
+
@make_xp_test_case(stats.rankdata)
|
76
77
|
class TestRankData:
|
77
78
|
|
78
|
-
def
|
79
|
-
|
80
|
-
|
79
|
+
def desired_dtype(self, method='average', has_nans=False, *, xp):
|
80
|
+
if has_nans:
|
81
|
+
return xp.asarray(1.).dtype
|
82
|
+
return xp.asarray(1.).dtype if method=='average' else xp.asarray(1).dtype
|
83
|
+
|
84
|
+
def test_empty(self, xp):
|
85
|
+
"""stats.rankdata of empty array should return an empty array."""
|
86
|
+
a = xp.asarray([], dtype=xp.int64)
|
81
87
|
r = rankdata(a)
|
82
|
-
|
88
|
+
xp_assert_equal(r, xp.asarray([], dtype=self.desired_dtype(xp=xp)))
|
89
|
+
|
90
|
+
def test_list(self):
|
91
|
+
# test that NumPy still accepts lists
|
83
92
|
r = rankdata([])
|
84
|
-
assert_array_equal(r, np.array([]
|
93
|
+
assert_array_equal(r, np.array([]))
|
94
|
+
|
95
|
+
r = rankdata([40, 10, 30, 10, 50])
|
96
|
+
assert_equal(r, [4.0, 1.5, 3.0, 1.5, 5.0])
|
85
97
|
|
86
98
|
@pytest.mark.parametrize("shape", [(0, 1, 2)])
|
87
99
|
@pytest.mark.parametrize("axis", [None, *range(3)])
|
88
|
-
def test_empty_multidim(self, shape, axis):
|
89
|
-
a =
|
100
|
+
def test_empty_multidim(self, shape, axis, xp):
|
101
|
+
a = xp.empty(shape, dtype=xp.int64)
|
90
102
|
r = rankdata(a, axis=axis)
|
91
103
|
expected_shape = (0,) if axis is None else shape
|
92
|
-
|
93
|
-
assert_equal(r.dtype, np.float64)
|
104
|
+
xp_assert_equal(r, xp.empty(expected_shape, dtype=self.desired_dtype(xp=xp)))
|
94
105
|
|
95
|
-
def test_one(self):
|
106
|
+
def test_one(self, xp):
|
96
107
|
"""Check stats.rankdata with an array of length 1."""
|
97
108
|
data = [100]
|
98
|
-
a =
|
109
|
+
a = xp.asarray(data, dtype=xp.int64)
|
99
110
|
r = rankdata(a)
|
100
|
-
|
101
|
-
r = rankdata(data)
|
102
|
-
assert_array_equal(r, np.array([1.0], dtype=np.float64))
|
111
|
+
xp_assert_equal(r, xp.asarray([1.0], dtype=self.desired_dtype(xp=xp)))
|
103
112
|
|
104
|
-
def test_basic(self):
|
113
|
+
def test_basic(self, xp):
|
105
114
|
"""Basic tests of stats.rankdata."""
|
115
|
+
desired_dtype = self.desired_dtype(xp=xp)
|
116
|
+
|
106
117
|
data = [100, 10, 50]
|
107
|
-
expected =
|
108
|
-
a =
|
118
|
+
expected = xp.asarray([3.0, 1.0, 2.0], dtype=desired_dtype)
|
119
|
+
a = xp.asarray(data, dtype=xp.int64)
|
109
120
|
r = rankdata(a)
|
110
|
-
|
111
|
-
r = rankdata(data)
|
112
|
-
assert_array_equal(r, expected)
|
121
|
+
xp_assert_equal(r, expected)
|
113
122
|
|
114
123
|
data = [40, 10, 30, 10, 50]
|
115
|
-
expected =
|
116
|
-
a =
|
124
|
+
expected = xp.asarray([4.0, 1.5, 3.0, 1.5, 5.0], dtype=desired_dtype)
|
125
|
+
a = xp.asarray(data, dtype=xp.int64)
|
117
126
|
r = rankdata(a)
|
118
|
-
|
119
|
-
r = rankdata(data)
|
120
|
-
assert_array_equal(r, expected)
|
127
|
+
xp_assert_equal(r, expected)
|
121
128
|
|
122
129
|
data = [20, 20, 20, 10, 10, 10]
|
123
|
-
expected =
|
124
|
-
a =
|
130
|
+
expected = xp.asarray([5.0, 5.0, 5.0, 2.0, 2.0, 2.0], dtype=desired_dtype)
|
131
|
+
a = xp.asarray(data, dtype=xp.int64)
|
125
132
|
r = rankdata(a)
|
126
|
-
|
127
|
-
|
128
|
-
|
129
|
-
|
130
|
-
a2d = a.reshape(2, 3)
|
133
|
+
xp_assert_equal(r, expected)
|
134
|
+
|
135
|
+
# # The docstring states explicitly that the argument is flattened.
|
136
|
+
a2d = xp.reshape(a, (2, 3))
|
131
137
|
r = rankdata(a2d)
|
132
|
-
|
138
|
+
xp_assert_equal(r, expected)
|
133
139
|
|
134
140
|
@skip_xp_invalid_arg
|
135
141
|
def test_rankdata_object_string(self):
|
@@ -165,50 +171,51 @@ class TestRankData:
|
|
165
171
|
val = np.array([0, 1, 2, 2.718, 3, 3.141], dtype='object')
|
166
172
|
check_ranks(np.random.choice(val, 200).astype('object'))
|
167
173
|
|
168
|
-
def test_large_int(self):
|
169
|
-
|
174
|
+
def test_large_int(self, xp):
|
175
|
+
if hasattr(xp, 'uint64'):
|
176
|
+
data = xp.asarray([2**60, 2**60+1], dtype=xp.uint64)
|
177
|
+
r = rankdata(data)
|
178
|
+
xp_assert_equal(r, xp.asarray([1.0, 2.0], dtype=self.desired_dtype(xp=xp)))
|
179
|
+
|
180
|
+
data = xp.asarray([2**60, 2**60+1], dtype=xp.int64)
|
170
181
|
r = rankdata(data)
|
171
|
-
|
182
|
+
xp_assert_equal(r, xp.asarray([1.0, 2.0], dtype=self.desired_dtype(xp=xp)))
|
172
183
|
|
173
|
-
data =
|
184
|
+
data = xp.asarray([2**60, -2**60+1], dtype=xp.int64)
|
174
185
|
r = rankdata(data)
|
175
|
-
|
186
|
+
xp_assert_equal(r, xp.asarray([2.0, 1.0], dtype=self.desired_dtype(xp=xp)))
|
176
187
|
|
177
|
-
|
188
|
+
@pytest.mark.parametrize('n', [10000, 100000, 1000000])
|
189
|
+
def test_big_tie(self, n, xp):
|
190
|
+
data = xp.ones(n)
|
178
191
|
r = rankdata(data)
|
179
|
-
|
192
|
+
expected_rank = 0.5 * (n + 1)
|
193
|
+
ref = xp.asarray(expected_rank * data, dtype=self.desired_dtype(xp=xp))
|
194
|
+
xp_assert_equal(r, ref)
|
180
195
|
|
181
|
-
def
|
182
|
-
|
183
|
-
|
184
|
-
|
185
|
-
expected_rank = 0.5 * (n + 1)
|
186
|
-
assert_array_equal(r, expected_rank * data,
|
187
|
-
"test failed with n=%d" % n)
|
188
|
-
|
189
|
-
def test_axis(self):
|
190
|
-
data = [[0, 2, 1],
|
191
|
-
[4, 2, 2]]
|
192
|
-
expected0 = [[1., 1.5, 1.],
|
193
|
-
[2., 1.5, 2.]]
|
196
|
+
def test_axis(self, xp):
|
197
|
+
data = xp.asarray([[0, 2, 1], [4, 2, 2]])
|
198
|
+
|
199
|
+
expected0 = xp.asarray([[1., 1.5, 1.], [2., 1.5, 2.]])
|
194
200
|
r0 = rankdata(data, axis=0)
|
195
|
-
|
196
|
-
|
197
|
-
|
201
|
+
xp_assert_equal(r0, expected0)
|
202
|
+
|
203
|
+
expected1 = xp.asarray([[1., 3., 2.], [3., 1.5, 1.5]])
|
198
204
|
r1 = rankdata(data, axis=1)
|
199
|
-
|
205
|
+
xp_assert_equal(r1, expected1)
|
200
206
|
|
201
|
-
methods
|
202
|
-
dtypes = [np.float64] + [np_long]*4
|
207
|
+
methods= ["average", "min", "max", "dense", "ordinal"]
|
203
208
|
|
204
209
|
@pytest.mark.parametrize("axis", [0, 1])
|
205
|
-
@pytest.mark.parametrize("method
|
206
|
-
def test_size_0_axis(self, axis, method,
|
210
|
+
@pytest.mark.parametrize("method", methods)
|
211
|
+
def test_size_0_axis(self, axis, method, xp):
|
207
212
|
shape = (3, 0)
|
208
|
-
|
213
|
+
desired_dtype = self.desired_dtype(method, xp=xp)
|
214
|
+
data = xp.zeros(shape)
|
209
215
|
r = rankdata(data, method=method, axis=axis)
|
210
216
|
assert_equal(r.shape, shape)
|
211
|
-
assert_equal(r.dtype,
|
217
|
+
assert_equal(r.dtype, desired_dtype)
|
218
|
+
xp_assert_equal(r, xp.empty(shape, dtype=desired_dtype))
|
212
219
|
|
213
220
|
@pytest.mark.parametrize('axis', range(3))
|
214
221
|
@pytest.mark.parametrize('method', methods)
|
@@ -289,50 +296,50 @@ class TestRankData:
|
|
289
296
|
[np.nan, np.nan, np.nan],
|
290
297
|
[1, 2.5, 2.5]])
|
291
298
|
|
292
|
-
|
293
|
-
|
294
|
-
|
295
|
-
|
296
|
-
|
297
|
-
|
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|
-
|
299
|
-
|
300
|
-
|
301
|
-
|
302
|
-
|
303
|
-
|
304
|
-
|
305
|
-
|
306
|
-
|
307
|
-
|
308
|
-
|
309
|
-
|
310
|
-
|
311
|
-
|
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|
-
|
313
|
-
|
314
|
-
|
315
|
-
|
316
|
-
|
317
|
-
|
318
|
-
|
319
|
-
|
320
|
-
|
321
|
-
|
322
|
-
|
323
|
-
|
324
|
-
|
325
|
-
|
326
|
-
|
327
|
-
|
328
|
-
|
329
|
-
|
330
|
-
|
331
|
-
|
332
|
-
|
333
|
-
|
334
|
-
|
335
|
-
|
336
|
-
|
337
|
-
|
338
|
-
|
299
|
+
_rankdata_cases = (
|
300
|
+
# values, method, expected
|
301
|
+
([], 'average', []),
|
302
|
+
([], 'min', []),
|
303
|
+
([], 'max', []),
|
304
|
+
([], 'dense', []),
|
305
|
+
([], 'ordinal', []),
|
306
|
+
#
|
307
|
+
([100], 'average', [1.0]),
|
308
|
+
([100], 'min', [1.0]),
|
309
|
+
([100], 'max', [1.0]),
|
310
|
+
([100], 'dense', [1.0]),
|
311
|
+
([100], 'ordinal', [1.0]),
|
312
|
+
#
|
313
|
+
([100, 100, 100], 'average', [2.0, 2.0, 2.0]),
|
314
|
+
([100, 100, 100], 'min', [1.0, 1.0, 1.0]),
|
315
|
+
([100, 100, 100], 'max', [3.0, 3.0, 3.0]),
|
316
|
+
([100, 100, 100], 'dense', [1.0, 1.0, 1.0]),
|
317
|
+
([100, 100, 100], 'ordinal', [1.0, 2.0, 3.0]),
|
318
|
+
#
|
319
|
+
([100, 300, 200], 'average', [1.0, 3.0, 2.0]),
|
320
|
+
([100, 300, 200], 'min', [1.0, 3.0, 2.0]),
|
321
|
+
([100, 300, 200], 'max', [1.0, 3.0, 2.0]),
|
322
|
+
([100, 300, 200], 'dense', [1.0, 3.0, 2.0]),
|
323
|
+
([100, 300, 200], 'ordinal', [1.0, 3.0, 2.0]),
|
324
|
+
#
|
325
|
+
([100, 200, 300, 200], 'average', [1.0, 2.5, 4.0, 2.5]),
|
326
|
+
([100, 200, 300, 200], 'min', [1.0, 2.0, 4.0, 2.0]),
|
327
|
+
([100, 200, 300, 200], 'max', [1.0, 3.0, 4.0, 3.0]),
|
328
|
+
([100, 200, 300, 200], 'dense', [1.0, 2.0, 3.0, 2.0]),
|
329
|
+
([100, 200, 300, 200], 'ordinal', [1.0, 2.0, 4.0, 3.0]),
|
330
|
+
#
|
331
|
+
([100, 200, 300, 200, 100], 'average', [1.5, 3.5, 5.0, 3.5, 1.5]),
|
332
|
+
([100, 200, 300, 200, 100], 'min', [1.0, 3.0, 5.0, 3.0, 1.0]),
|
333
|
+
([100, 200, 300, 200, 100], 'max', [2.0, 4.0, 5.0, 4.0, 2.0]),
|
334
|
+
([100, 200, 300, 200, 100], 'dense', [1.0, 2.0, 3.0, 2.0, 1.0]),
|
335
|
+
([100, 200, 300, 200, 100], 'ordinal', [1.0, 3.0, 5.0, 4.0, 2.0]),
|
336
|
+
#
|
337
|
+
([10] * 30, 'ordinal', np.arange(1.0, 31.0)),
|
338
|
+
)
|
339
|
+
|
340
|
+
@pytest.mark.parametrize('case', _rankdata_cases)
|
341
|
+
def test_cases(self, case, xp):
|
342
|
+
values, method, expected = case
|
343
|
+
r = rankdata(xp.asarray(values), method=method)
|
344
|
+
ref = xp.asarray(expected, dtype=self.desired_dtype(method, xp=xp))
|
345
|
+
xp_assert_equal(r, ref)
|