scipy 1.15.3__cp313-cp313-macosx_14_0_arm64.whl → 1.16.0rc1__cp313-cp313-macosx_14_0_arm64.whl

scipy/special/_support_alternative_backends.py

@@ -1,91 +1,182 @@
-import os
-import sys
 import functools
+import operator
+from collections.abc import Callable
+from dataclasses import dataclass
+from types import ModuleType
 
 import numpy as np
 from scipy._lib._array_api import (
-    array_namespace, scipy_namespace_for, is_numpy
+    array_namespace, scipy_namespace_for, is_numpy, is_dask, is_marray,
+    xp_promote, xp_capabilities, SCIPY_ARRAY_API
 )
+import scipy._lib.array_api_extra as xpx
 from . import _ufuncs
-# These don't really need to be imported, but otherwise IDEs might not realize
-# that these are defined in this file / report an error in __init__.py
-from ._ufuncs import (
-    log_ndtr, ndtr, ndtri, erf, erfc, i0, i0e, i1, i1e, gammaln,  # noqa: F401
-    gammainc, gammaincc, logit, expit, entr, rel_entr, xlogy,  # noqa: F401
-    chdtr, chdtrc, betainc, betaincc, stdtr  # noqa: F401
-)
-
-_SCIPY_ARRAY_API = os.environ.get("SCIPY_ARRAY_API", False)
-array_api_compat_prefix = "scipy._lib.array_api_compat"
 
 
-def get_array_special_func(f_name, xp, n_array_args):
-    spx = scipy_namespace_for(xp)
-    f = None
-    if is_numpy(xp):
-        f = getattr(_ufuncs, f_name, None)
-    elif spx is not None:
-        f = getattr(spx.special, f_name, None)
+@dataclass
+class _FuncInfo:
+    # NumPy-only function. IT MUST BE ELEMENTWISE.
+    func: Callable
+    # Number of arguments, not counting out=
+    # This is for testing purposes only, due to the fact that
+    # inspect.signature() just returns *args for ufuncs.
+    n_args: int
+    # @xp_capabilities decorator, for the purpose of
+    # documentation and unit testing. Omit to indicate
+    # full support for all backends.
+    xp_capabilities: Callable[[Callable], Callable] | None = None
+    # Generic implementation to fall back on if there is no native dispatch
+    # available. This is a function that accepts (main namespace, scipy namespace)
+    # and returns the final callable, or None if not available.
+    generic_impl: Callable[
+        [ModuleType, ModuleType | None], Callable | None
+    ] | None = None
+
+    @property
+    def name(self):
+        return self.func.__name__
+
+    # These are needed by @lru_cache below
+    def __hash__(self):
+        return hash(self.func)
+
+    def __eq__(self, other):
+        return isinstance(other, _FuncInfo) and self.func == other.func
+
+    @property
+    def wrapper(self):
+        if self.name in globals():
+            # Already initialised. We are likely in a unit test.
+            # Return function potentially overridden by xpx.testing.lazy_xp_function.
+            import scipy.special
+            return getattr(scipy.special, self.name)
+
+        if SCIPY_ARRAY_API:
+            @functools.wraps(self.func)
+            def wrapped(*args, **kwargs):
+                xp = array_namespace(*args)
+                return self._wrapper_for(xp)(*args, **kwargs)
+
+            # Allow pickling the function. Normally this is done by @wraps,
+            # but in this case it doesn't work because self.func is a ufunc.
+            wrapped.__module__ = "scipy.special"
+            wrapped.__qualname__ = self.name
+            func = wrapped
+        else:
+            func = self.func
+
+        capabilities = self.xp_capabilities or xp_capabilities()
+        # In order to retain a naked ufunc when SCIPY_ARRAY_API is
+        # disabled, xp_capabilities must apply its changes in place.
+        cap_func = capabilities(func)
+        assert cap_func is func
+        return func
+
+    @functools.lru_cache(1000)
+    def _wrapper_for(self, xp):
+        if is_numpy(xp):
+            return self.func
+
+        # If a native implementation is available, use that
+        spx = scipy_namespace_for(xp)
+        f = _get_native_func(xp, spx, self.name)
+        if f is not None:
+            return f
+
+        # If generic Array API implementation is available, use that
+        if self.generic_impl is not None:
+            f = self.generic_impl(xp, spx)
+            if f is not None:
+                return f
+
+        if is_marray(xp):
+            # Unwrap the array, apply the function on the wrapped namespace,
+            # and then re-wrap it.
+            # IMPORTANT: this only works because all functions in this module
+            # are elementwise. Otherwise, we would not be able to define a
+            # general rule for mask propagation.
+
+            _f = globals()[self.name]  # Allow nested wrapping
+            def f(*args, _f=_f, xp=xp, **kwargs):
+                data_args = [arg.data for arg in args]
+                out = _f(*data_args, **kwargs)
+                mask = functools.reduce(operator.or_, (arg.mask for arg in args))
+                return xp.asarray(out, mask=mask)
+
+            return f
+
+        if is_dask(xp):
+            # Apply the function to each block of the Dask array.
+            # IMPORTANT: map_blocks works only because all functions in this module
+            # are elementwise. It would be a grave mistake to apply this to gufuncs
+            # or any other function with reductions, as they would change their
+            # output depending on chunking!
+
+            _f = globals()[self.name]  # Allow nested wrapping
+            def f(*args, _f=_f, xp=xp, **kwargs):
+                # Hide dtype kwarg from map_blocks
+                return xp.map_blocks(functools.partial(_f, **kwargs), *args)
+
+            return f
+
+        # As a final resort, use the NumPy/SciPy implementation
+        _f = self.func
+        def f(*args, _f=_f, xp=xp, **kwargs):
+            # TODO use xpx.lazy_apply to add jax.jit support
+            # (but dtype propagation can be non-trivial)
+            args = [np.asarray(arg) for arg in args]
+            out = _f(*args, **kwargs)
+            return xp.asarray(out)
 
-    if f is not None:
         return f
 
-    # if generic array-API implementation is available, use that;
-    # otherwise, fall back to NumPy/SciPy
-    if f_name in _generic_implementations:
-        _f = _generic_implementations[f_name](xp=xp, spx=spx)
-        if _f is not None:
-            return _f
-
-    _f = getattr(_ufuncs, f_name, None)
-    def __f(*args, _f=_f, _xp=xp, **kwargs):
-        array_args = args[:n_array_args]
-        other_args = args[n_array_args:]
-        array_args = [np.asarray(arg) for arg in array_args]
-        out = _f(*array_args, *other_args, **kwargs)
-        return _xp.asarray(out)
 
-    return __f
-
-
-def _get_shape_dtype(*args, xp):
-    args = xp.broadcast_arrays(*args)
-    shape = args[0].shape
-    dtype = xp.result_type(*args)
-    if xp.isdtype(dtype, 'integral'):
-        dtype = xp.float64
-        args = [xp.asarray(arg, dtype=dtype) for arg in args]
-    return args, shape, dtype
+def _get_native_func(xp, spx, f_name):
+    f = getattr(spx.special, f_name, None) if spx else None
+    if f is None and hasattr(xp, 'special'):
+        # Currently dead branch, in anticipation of 'special' Array API extension
+        # https://github.com/data-apis/array-api/issues/725
+        f = getattr(xp.special, f_name, None)
+    return f
 
 
 def _rel_entr(xp, spx):
     def __rel_entr(x, y, *, xp=xp):
-        args, shape, dtype = _get_shape_dtype(x, y, xp=xp)
-        x, y = args
-        res = xp.full(x.shape, xp.inf, dtype=dtype)
-        res[(x == 0) & (y >= 0)] = xp.asarray(0, dtype=dtype)
-        i = (x > 0) & (y > 0)
-        res[i] = x[i] * (xp.log(x[i]) - xp.log(y[i]))
+        # https://github.com/data-apis/array-api-extra/issues/160
+        mxp = array_namespace(x._meta, y._meta) if is_dask(xp) else xp
+        x, y = xp_promote(x, y, broadcast=True, force_floating=True, xp=xp)
+        xy_pos = (x > 0) & (y > 0)
+        xy_inf = xp.isinf(x) & xp.isinf(y)
+        res = xpx.apply_where(
+            xy_pos & ~xy_inf,
+            (x, y),
+            # Note: for very large x, this can overflow.
+            lambda x, y: x * (mxp.log(x) - mxp.log(y)),
+            fill_value=xp.inf
+        )
+        res = xpx.at(res)[(x == 0) & (y >= 0)].set(0)
+        res = xpx.at(res)[xp.isnan(x) | xp.isnan(y) | (xy_pos & xy_inf)].set(xp.nan)
         return res
+
     return __rel_entr
 
 
 def _xlogy(xp, spx):
     def __xlogy(x, y, *, xp=xp):
+        x, y = xp_promote(x, y, force_floating=True, xp=xp)
         with np.errstate(divide='ignore', invalid='ignore'):
             temp = x * xp.log(y)
-        return xp.where(x == 0., xp.asarray(0., dtype=temp.dtype), temp)
+        return xp.where(x == 0., 0., temp)
     return __xlogy
 
 
+
 def _chdtr(xp, spx):
     # The difference between this and just using `gammainc`
     # defined by `get_array_special_func` is that if `gammainc`
     # isn't found, we don't want to use the SciPy version; we'll
     # return None here and use the SciPy version of `chdtr`.
-    gammainc = getattr(spx.special, 'gammainc', None) if spx else None  # noqa: F811
-    if gammainc is None and hasattr(xp, 'special'):
-        gammainc = getattr(xp.special, 'gammainc', None)
+    gammainc = _get_native_func(xp, spx, 'gammainc')
     if gammainc is None:
         return None
 
@@ -104,9 +195,7 @@ def _chdtrc(xp, spx):
     # defined by `get_array_special_func` is that if `gammaincc`
     # isn't found, we don't want to use the SciPy version; we'll
     # return None here and use the SciPy version of `chdtrc`.
-    gammaincc = getattr(spx.special, 'gammaincc', None) if spx else None  # noqa: F811
-    if gammaincc is None and hasattr(xp, 'special'):
-        gammaincc = getattr(xp.special, 'gammaincc', None)
+    gammaincc = _get_native_func(xp, spx, 'gammaincc')
     if gammaincc is None:
         return None
 
@@ -119,9 +208,7 @@ def _chdtrc(xp, spx):
 
 
 def _betaincc(xp, spx):
-    betainc = getattr(spx.special, 'betainc', None) if spx else None  # noqa: F811
-    if betainc is None and hasattr(xp, 'special'):
-        betainc = getattr(xp.special, 'betainc', None)
+    betainc = _get_native_func(xp, spx, 'betainc')
     if betainc is None:
         return None
 
@@ -132,9 +219,7 @@ def _betaincc(xp, spx):
 
 
 def _stdtr(xp, spx):
-    betainc = getattr(spx.special, 'betainc', None) if spx else None  # noqa: F811
-    if betainc is None and hasattr(xp, 'special'):
-        betainc = getattr(xp.special, 'betainc', None)
+    betainc = _get_native_func(xp, spx, 'betainc')
     if betainc is None:
         return None
 
@@ -146,57 +231,65 @@ def _stdtr(xp, spx):
     return __stdtr
 
 
-_generic_implementations = {'rel_entr': _rel_entr,
-                            'xlogy': _xlogy,
-                            'chdtr': _chdtr,
-                            'chdtrc': _chdtrc,
-                            'betaincc': _betaincc,
-                            'stdtr': _stdtr,
-                            }
-
-
-# functools.wraps doesn't work because:
-# 'numpy.ufunc' object has no attribute '__module__'
-def support_alternative_backends(f_name, n_array_args):
-    func = getattr(_ufuncs, f_name)
-
-    @functools.wraps(func)
-    def wrapped(*args, **kwargs):
-        xp = array_namespace(*args[:n_array_args])
-        f = get_array_special_func(f_name, xp, n_array_args)
-        return f(*args, **kwargs)
-
-    return wrapped
-
-
-array_special_func_map = {
-    'log_ndtr': 1,
-    'ndtr': 1,
-    'ndtri': 1,
-    'erf': 1,
-    'erfc': 1,
-    'i0': 1,
-    'i0e': 1,
-    'i1': 1,
-    'i1e': 1,
-    'gammaln': 1,
-    'gammainc': 2,
-    'gammaincc': 2,
-    'logit': 1,
-    'expit': 1,
-    'entr': 1,
-    'rel_entr': 2,
-    'xlogy': 2,
-    'chdtr': 2,
-    'chdtrc': 2,
-    'betainc': 3,
-    'betaincc': 3,
-    'stdtr': 2,
-}
-
-for f_name, n_array_args in array_special_func_map.items():
-    f = (support_alternative_backends(f_name, n_array_args) if _SCIPY_ARRAY_API
-         else getattr(_ufuncs, f_name))
-    sys.modules[__name__].__dict__[f_name] = f
-
-__all__ = list(array_special_func_map)
+def _stdtrit(xp, spx):
+    # Need either native stdtr or native betainc
+    stdtr = _get_native_func(xp, spx, 'stdtr') or _stdtr(xp, spx)
+    # If betainc is not defined, the root-finding would be done with `xp`
+    # despite `stdtr` being evaluated with SciPy/NumPy `stdtr`. Save the
+    # conversions: in this case, just evaluate `stdtrit` with SciPy/NumPy.
+    if stdtr is None:
+        return None
+
+    from scipy.optimize.elementwise import bracket_root, find_root
+
+    def __stdtrit(df, p):
+        def fun(t, df, p):  return stdtr(df, t) - p
+        res_bracket = bracket_root(fun, xp.zeros_like(p), args=(df, p))
+        res_root = find_root(fun, res_bracket.bracket, args=(df, p))
+        return res_root.x
+
+    return __stdtrit
+
+
+# Inventory of automatically dispatched functions
+# IMPORTANT: these must all be **elementwise** functions!
+
+# PyTorch doesn't implement `betainc`.
+# On torch CPU we can fall back to NumPy, but on GPU it won't work.
+_needs_betainc = xp_capabilities(cpu_only=True, exceptions=['jax.numpy', 'cupy'])
+
+_special_funcs = (
+    _FuncInfo(_ufuncs.betainc, 3, _needs_betainc),
+    _FuncInfo(_ufuncs.betaincc, 3, _needs_betainc, generic_impl=_betaincc),
+    _FuncInfo(_ufuncs.chdtr, 2, generic_impl=_chdtr),
+    _FuncInfo(_ufuncs.chdtrc, 2, generic_impl=_chdtrc),
+    _FuncInfo(_ufuncs.erf, 1),
+    _FuncInfo(_ufuncs.erfc, 1),
+    _FuncInfo(_ufuncs.entr, 1),
+    _FuncInfo(_ufuncs.expit, 1),
+    _FuncInfo(_ufuncs.i0, 1),
+    _FuncInfo(_ufuncs.i0e, 1),
+    _FuncInfo(_ufuncs.i1, 1),
+    _FuncInfo(_ufuncs.i1e, 1),
+    _FuncInfo(_ufuncs.log_ndtr, 1),
+    _FuncInfo(_ufuncs.logit, 1),
+    _FuncInfo(_ufuncs.gammaln, 1),
+    _FuncInfo(_ufuncs.gammainc, 2),
+    _FuncInfo(_ufuncs.gammaincc, 2),
+    _FuncInfo(_ufuncs.ndtr, 1),
+    _FuncInfo(_ufuncs.ndtri, 1),
+    _FuncInfo(_ufuncs.rel_entr, 2, generic_impl=_rel_entr),
+    _FuncInfo(_ufuncs.stdtr,  2, _needs_betainc, generic_impl=_stdtr),
+    _FuncInfo(_ufuncs.stdtrit, 2,
+              xp_capabilities(
+                  cpu_only=True, exceptions=['cupy'],  # needs betainc
+                  skip_backends=[("jax.numpy", "no scipy.optimize support")]),
+              generic_impl=_stdtrit),
+    _FuncInfo(_ufuncs.xlogy, 2, generic_impl=_xlogy),
+)
+
+# Override ufuncs.
+# When SCIPY_ARRAY_API is disabled, this exclusively updates the docstrings in place
+# and populates the xp_capabilities table, while retaining the original ufuncs.
+globals().update({nfo.func.__name__: nfo.wrapper for nfo in _special_funcs})
+__all__ = [nfo.func.__name__ for nfo in _special_funcs]

scipy/special/_testutils.py

@@ -294,13 +294,13 @@ class FuncData:
                 msg = [""]
                 msg.append(f"Max |adiff|: {diff[bad_j].max():g}")
                 msg.append(f"Max |rdiff|: {rdiff[bad_j].max():g}")
-                msg.append("Bad results (%d out of %d) for the following points "
-                           "(in output %d):"
-                           % (np.sum(bad_j), point_count, output_num,))
+                msg.append(f"Bad results ({np.sum(bad_j)} out of "
+                           f"{point_count}) for the following points "
+                           f"(in output {output_num}):")
                 for j in np.nonzero(bad_j)[0]:
                     j = int(j)
                     def fmt(x):
-                        return '%30s' % np.array2string(x[j], precision=18)
+                        return f'{np.array2string(x[j], precision=18):30s}'
                     a = "  ".join(map(fmt, params))
                     b = "  ".join(map(fmt, got))
                     c = "  ".join(map(fmt, wanted))

scipy/special/_ufuncs.pyi

@@ -265,6 +265,7 @@ _kolmogp: np.ufunc
 _lambertw: np.ufunc
 _lanczos_sum_expg_scaled: np.ufunc
 _lgam1p: np.ufunc
+_log1mexp: np.ufunc
 _log1pmx: np.ufunc
 _riemann_zeta: np.ufunc
 _scaled_exp1: np.ufunc