scipion-pyworkflow 3.9.0__py3-none-any.whl → 3.9.2__py3-none-any.whl

pyworkflow/constants.py

@@ -43,7 +43,7 @@ VERSION_1 = '1.0.0'
 VERSION_1_1 = '1.1.0'
 VERSION_1_2 = '1.2.0'
 VERSION_2_0 = '2.0.0'
-VERSION_3_0 = '3.9.0'
+VERSION_3_0 = '3.9.2'
 
 # For a new release, define a new constant and assign it to LAST_VERSION
 # The existing one has to be added to OLD_VERSIONS list.

pyworkflow/project/project.py

@@ -1934,7 +1934,7 @@ class Project(object):
 
         if n is not None:
             # Iterate recursively all descendants
-            for node in n.iterChilds():
+            for node in n.iterChildren():
                 connection[node.pointer.getUniqueId()] = True
                 # Add also 
                 connection[node.pointer.get().strId()] = True

pyworkflow/protocol/protocol.py

@@ -1139,20 +1139,17 @@ class Protocol(Step):
 
         return self.__insertStep(step,prerequisites)
 
-    # def _insertRunJobStep(self, progName, progArguments, resultFiles=[],
-    #                       **kwargs):
-    #     """ Insert an Step that will simple call runJob function
-    #     **args: see __insertStep
-    #     """
-    #     return self._insertFunctionStep('runJob', progName, progArguments,
-    #                                     **kwargs)
-    #
-    # def _insertCopyFileStep(self, sourceFile, targetFile, **kwargs):
-    #     """ Shortcut function to insert a step for copying a file to a destiny. """
-    #     step = FunctionStep(pwutils.copyFile, 'copyFile', sourceFile,
-    #                         targetFile,
-    #                         **kwargs)
-    #     return self.__insertStep(step, **kwargs)
+    def _insertRunJobStep(self, progName, progArguments, resultFiles=[],
+                          **kwargs):
+        """ Insert a Step that will simply call runJob function
+        **args: see __insertStep
+        """
+        return self._insertFunctionStep('runJob', progName, progArguments, **kwargs)
+
+    def _insertCopyFileStep(self, sourceFile, targetFile, **kwargs):
+        """ Shortcut function to insert a step for copying a file to a destiny. """
+        step = FunctionStep(pwutils.copyFile, 'copyFile', sourceFile, targetFile, **kwargs)
+        return self.__insertStep(step, **kwargs)
 
     def _enterDir(self, path):
         """ Enter into a new directory path and store the current path.

{scipion_pyworkflow-3.9.0.dist-info → scipion_pyworkflow-3.9.2.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: scipion-pyworkflow
-Version: 3.9.0
+Version: 3.9.2
 Summary: Simple workflow platform used in scientific applications, initially developed within the Scipion framework for image processing in Electron Microscopy.
 Home-page: https://github.com/scipion-em/scipion-pyworkflow
 Author: J.M. De la Rosa Trevin, Roberto Marabini, Grigory Sharov, Josue Gomez Blanco, Pablo Conesa, Yunior Fonseca Reyna

{scipion_pyworkflow-3.9.0.dist-info → scipion_pyworkflow-3.9.2.dist-info}/RECORD

@@ -1,6 +1,6 @@
 pyworkflow/__init__.py,sha256=Wr-MVKMQJy_Cy-rpPPB0-pyv8-8tx7GPPaLSNBrV1AI,1246
 pyworkflow/config.py,sha256=_sq6YCRfcfE4WUNXLShgbICbBeTSLpD2KmPVapR1Wos,22306
-pyworkflow/constants.py,sha256=sFArdG6tm4jPDBkoWOTMYbxGvx6TxRA5-Q24_kgOTpk,7447
+pyworkflow/constants.py,sha256=Jmyas1LYRfbbYU1jWE9zfX1MvkMGlnS5vhPxPgpNNgs,7447
 pyworkflow/exceptions.py,sha256=3VFxuNJHcIWxRnLPR0vYg0RFAQMmxPBJZLZSi87VI8E,507
 pyworkflow/object.py,sha256=yX3tBUuBssCI8aWGlTmyEKzFE59dJq_7NqllouVzMk0,55069
 pyworkflow/plugin.py,sha256=JJm5plPyOnPAR4To6I5rXVIBda-1Dg-53zicdnLSrac,28858
@@ -53,7 +53,7 @@ pyworkflow/mapper/sqlite_db.py,sha256=HYSXe_fRX1NBKDs6l2zefdO4PMEajnoDMXPjmoFs8K
 pyworkflow/project/__init__.py,sha256=05l9tvr3FfBNL3XNZSbFCs6yO-1HbFlmFu204w7yyKk,1369
 pyworkflow/project/config.py,sha256=F9H1vLJJ9vPyT6zeSqHX69o-wbaN8hWueOuDn53evjc,13692
 pyworkflow/project/manager.py,sha256=bk5hFDuIJqEgELU0plFG-RycGhhFfcJxmPp_qhFj1mE,6758
-pyworkflow/project/project.py,sha256=PqFX6njzAtmmpi-1O4ZeRmwYr7Won8HPuldSG8tl-4Q,83816
+pyworkflow/project/project.py,sha256=NGiD0vLZTsPP5vCLh4ddD0D3mmPScnNnbd71IyfWXX4,83818
 pyworkflow/project/scripts/clean_projects.py,sha256=5qsLHIyJk7sZJUrfSp8sbMRYTkbZ2purtc-5JJb8awM,2600
 pyworkflow/project/scripts/config.py,sha256=VF4NMsykWzQjCQHRwnfFwxFq2PSk57Ni3TpgTh3nF3w,2933
 pyworkflow/project/scripts/create.py,sha256=cmyYJoKP4J9goPRRtQRM9jrsfp-DARHS0XeKJ0ObSCE,2781
@@ -72,7 +72,7 @@ pyworkflow/protocol/hosts.py,sha256=B9ENNclqYe75CPqAMOoPjwn-r3ST6HxTewXtsK_zWks,
 pyworkflow/protocol/launch.py,sha256=7WKAiHma2tSuhqK4xVnxD_SnVt7Y5qyDFdQwTo8BLF0,11267
 pyworkflow/protocol/package.py,sha256=L6x3HHKtbrhDQRJHD07SG3DQKNMGaRQ0ROoLEY3SuRQ,1444
 pyworkflow/protocol/params.py,sha256=gP6QImgULvzCr-f0iseArIp1bjXm1JuUr9padmuMs7M,25901
-pyworkflow/protocol/protocol.py,sha256=Uwa5AT26wlIogPHLgmvqOTcs3tdV-CB88duE1GJKzvc,97219
+pyworkflow/protocol/protocol.py,sha256=f0Wi3dn4MRbZRylvjGxOZLNRDYT363ZSr-TmRPB2FuM,97091
 pyworkflow/resources/Imagej.png,sha256=nU2nWI1wxZB_xlOKsZzdUjj-qiCTjO6GwEKYgZ5Risg,14480
 pyworkflow/resources/chimera.png,sha256=AKCuwMqmZo0Cg2sddMUjBWUhmAq-nPsAVCBpVrYNeiQ,815
 pyworkflow/resources/fa-exclamation-triangle_alert.png,sha256=31_XvRu0CkJ2dvHSpcBAR43378lIJTWwiag_A7SuUQc,585
@@ -131,10 +131,10 @@ pyworkflowtests/tests/test_protocol_export.py,sha256=z18nKPkOnrYLMU8KqcnVsF6-ylQ
 pyworkflowtests/tests/test_protocol_output.py,sha256=8gnIFMRNmwPnIBRCG29WHJB6mqK4FLGn1jiXHtTD6pY,5980
 pyworkflowtests/tests/test_streaming.py,sha256=vOH-bKCM-fVUSsejqNnCX5TPXhdUayk9ZtJHsNVcfCY,1615
 pyworkflowtests/tests/test_utils.py,sha256=_pTYGCuXC7YNMdCBzUYNfSBCR3etrHsxHfIhsQi4VPc,7465
-scipion_pyworkflow-3.9.0.dist-info/LICENSE.txt,sha256=ixuiBLtpoK3iv89l7ylKkg9rs2GzF9ukPH7ynZYzK5s,35148
-scipion_pyworkflow-3.9.0.dist-info/METADATA,sha256=Zx2E1Sc_peac-1ECc8s0euuB5qjSbJzEKxAkK6PuIso,4681
-scipion_pyworkflow-3.9.0.dist-info/WHEEL,sha256=GV9aMThwP_4oNCtvEC2ec3qUYutgWeAzklro_0m4WJQ,91
-scipion_pyworkflow-3.9.0.dist-info/dependency_links.txt,sha256=D7r_CPRjYRtBb3q_OBocTdsaeXI5TwnYMu5ri0JFtzs,84
-scipion_pyworkflow-3.9.0.dist-info/entry_points.txt,sha256=oR-zwsOICjEPINm-FWVPp-RfnpXZanVal4_XG6BWkkQ,127
-scipion_pyworkflow-3.9.0.dist-info/top_level.txt,sha256=PzyJteyenJwLjAeSFP7oYrTN_U71GABQwET8oLZkh9k,27
-scipion_pyworkflow-3.9.0.dist-info/RECORD,,
+scipion_pyworkflow-3.9.2.dist-info/LICENSE.txt,sha256=ixuiBLtpoK3iv89l7ylKkg9rs2GzF9ukPH7ynZYzK5s,35148
+scipion_pyworkflow-3.9.2.dist-info/METADATA,sha256=xDDA-wk5EQkOXD26Jimq83-2oKP2dWWdRn9FfDbLsas,4681
+scipion_pyworkflow-3.9.2.dist-info/WHEEL,sha256=GV9aMThwP_4oNCtvEC2ec3qUYutgWeAzklro_0m4WJQ,91
+scipion_pyworkflow-3.9.2.dist-info/dependency_links.txt,sha256=D7r_CPRjYRtBb3q_OBocTdsaeXI5TwnYMu5ri0JFtzs,84
+scipion_pyworkflow-3.9.2.dist-info/entry_points.txt,sha256=oR-zwsOICjEPINm-FWVPp-RfnpXZanVal4_XG6BWkkQ,127
+scipion_pyworkflow-3.9.2.dist-info/top_level.txt,sha256=PzyJteyenJwLjAeSFP7oYrTN_U71GABQwET8oLZkh9k,27
+scipion_pyworkflow-3.9.2.dist-info/RECORD,,