scipion-pyworkflow 3.8.0__py3-none-any.whl → 3.9.0__py3-none-any.whl

pyworkflow/utils/graph.py

@@ -26,6 +26,8 @@
 """
 This module define a Graph class and some utilities 
 """
+import logging
+logger = logging.getLogger(__name__)
 
 
 class Node(object):
@@ -33,7 +35,7 @@ class Node(object):
     _count = 1
 
     def __init__(self, name=None, label=None):
-        self._childs = []
+        self._children = []
         self._parents = []
 
         if name is None:
@@ -44,6 +46,7 @@ class Node(object):
         if label is None:
             label = name
         self._label = label
+        self._fixed = False
 
     def getName(self):
         return self._name
@@ -57,13 +60,13 @@ class Node(object):
     def isRoot(self):
         return len(self._parents) == 0
 
-    def getChilds(self):
-        return self._childs
+    def getChildren(self):
+        return self._children
 
     def addChild(self, *nodes):
         for n in nodes:
-            if n not in self._childs:
-                self._childs.append(n)
+            if n not in self._children:
+                self._children.append(n)
                 n._parents.append(self)
 
     def getParent(self):
@@ -78,36 +81,36 @@ class Node(object):
     def getParents(self):
         return self._parents
 
-    def iterChilds(self):
-        """ Iterate over all childs and subchilds. 
-        Nodes can be visited more than once if have
+    def iterChildren(self):
+        """ Iterate over all children and sub-children.
+        Nodes can be visited more than once if it has
         more than one parent.
         """
-        for child in self._childs:
-            for c in child.iterChilds():
+        for child in self._children:
+            for c in child.iterChildren():
                 yield c
 
         yield self
 
-    def countChilds(self, visitedNode=None, count=0):
+    def countChildren(self, visitedNode=None, count=0):
         """ Iterate over all childs and subchilds.
         Nodes can be visited once
         """
-        for child in self._childs:
+        for child in self._children:
             if child._name not in visitedNode:
                 visitedNode[child._name] = True
-            child.countChilds(visitedNode)
+            child.countChildren(visitedNode)
         return len(visitedNode)
 
 
-    def iterChildsBreadth(self):
+    def iterChildrenBreadth(self):
         """ Iter child nodes in a breadth-first order
         """
-        for child in self._childs:
+        for child in self._children:
             yield child
 
-        for child in self._childs:
-            for child2 in child.iterChildsBreadth():
+        for child in self._children:
+            for child2 in child.iterChildrenBreadth():
                 yield child2
 
     def __str__(self):
@@ -133,13 +136,13 @@ class Graph(object):
     def _registerNode(self, node):
         self._nodes.append(node)
         self._nodesDict[node.getName()] = node
-        for child in node.getChilds():
+        for child in node.getChildren():
             self._registerNode(child)
 
-    def getRoot(self):
+    def getRoot(self) -> Node:
         return self._root
 
-    def createNode(self, nodeName, nodeLabel=None):
+    def createNode(self, nodeName, nodeLabel=None) -> Node:
         """ Add a node to the graph """
         node = Node(nodeName, nodeLabel)
         self._registerNode(node)
@@ -150,7 +153,7 @@ class Graph(object):
         """ Register an alias name for the node. """
         self._nodesDict[aliasName] = node
 
-    def getNode(self, nodeName):
+    def getNode(self, nodeName) -> Node:
         return self._nodesDict.get(nodeName, None)
 
     def getNodeNames(self):
@@ -164,33 +167,3 @@ class Graph(object):
         """ Return all nodes that have no parent. """
         return [n for n in self._nodes if n.isRoot()]
 
-    def printNodes(self):
-        for node in self.getNodes():
-            print("Node: ", node)
-            print(" Childs: ", ','.join([c.getLabel()
-                                         for c in node.getChilds()]))
-
-    def _escape(self, label):
-        return label.replace('.', '_').replace(' ', '_').replace('-', '_').replace('___', '_')
-
-    def printDot(self, useId=True):
-        """ If useId is True, use the node id for label the graph.
-         If not, use the run name.
-        """
-
-        def getLabel(node):
-            if useId:
-                return node.getName()
-            else:
-                return node.getLabel()
-
-        dotStr = "\ndigraph {\n"
-
-        for node in self.getNodes():
-            for child in node.getChilds():
-                nodeLabel = self._escape(getLabel(node))
-                childLabel = self._escape(getLabel(child))
-                dotStr += "   %s -> %s;\n" % (nodeLabel, childLabel)
-        dotStr += "}"
-        print(dotStr)
-        return dotStr

pyworkflow/utils/properties.py

@@ -29,7 +29,7 @@
 This module defines the text used in the application.
 """
 # NOTE: DO NOT REMOVE UNTIL plugin manager uses Config.SCIPION_MAIN_COLOR and is released
-from pyworkflow.constants import Color
+from pyworkflow.constants import Color, DOCSITEURLS
 from PIL import Image
 
 class Message:
@@ -124,6 +124,7 @@ class Message:
     LABEL_PARALLEL = 'Parallel'
     LABEL_HOST = 'Host'
     LABEL_THREADS = 'Threads'
+    LABEL_SCIPION_THREADS = 'Scipion threads'
     LABEL_MPI = 'MPI'
     LABEL_QUEUE = 'Use a queue engine?'
 
@@ -140,18 +141,21 @@ Each step could be computationally intensive, that's why
 the *Continue* execution mode will try to continue from the
 last completed step. On the other hand, the *Restart* mode
 will clean the whole run directory and start from scratch.    
-    """    
-
-    HELP_MPI_THREADS = """
-Define the number of processors to be used in the execution.
-*MPI*: This is a number of independent processes
-       that communicate through message passing
-       over the network (or the same computer).
-*Threads*: This refers to different execution threads 
-       in the same process that can share memory. They run in
-       the same computer.     
     """
 
+    HELP_PARALLEL_HEADER = 'Define the number of processors to be used in the execution.\nCheck %s for more detailed info.\n\n' % DOCSITEURLS.THREADS_MPIS_AND_GPUS
+    HELP_PARALLEL_MPI = ("*MPI*:\nThis is a number of independent processes"
+                         " that communicate through message passing "
+                         "over the network (or the same computer).\n")
+    HELP_PARALLEL_THREADS = ("*Threads*:\nThis refers to different execution threads in the same process that "
+                             "can share memory. They run in the same computer. This value is an argument"
+                             " passed to the program integrated")
+
+    HELP_SCIPION_THREADS = ("*Scipion threads*:\n threads created by Scipion to run the steps."
+                            " 1 thread is always used by the master/main process. Then extra threads will allow"
+                            " this protocol to run several steps at the same time, taking always into account "
+                            "restrictions to previous steps and 'theoretical GPU availability'")
+
     HELP_USEQUEUE = """
     Click Yes if you want to send this execution to a queue engine like Slurm, Torque, ...
     The queue commands to launch and stop jobs should be configured at
@@ -446,7 +450,7 @@ class Sprite:
     @classmethod
     def getSpritesFile(cls):
         from pyworkflow import Config
-        return Config.SCIPION_SPRITES_FILE
+        return Config.getSpritesFile()
     @classmethod
     def loadSprites(cls):
         """ Loads the image of the sprite"""

pyworkflowtests/protocols.py

@@ -55,16 +55,16 @@ class SleepingProtocol(pwprot.Protocol):
     def _insertAllSteps(self):
         print("Inserting all steps...")
         for i in range(self.numberOfSleeps.get()):
-            self._insertFunctionStep('sleepStep', i + 1)
+            self._insertFunctionStep(self.sleepStep, i + 1)
 
 
 class ParallelSleepingProtocol(SleepingProtocol):
     def _insertAllSteps(self):
-        step1 = self._insertFunctionStep('sleepStep', 1)
+        step1 = self._insertFunctionStep(self.sleepStep, 1)
         n = 2
         deps = [step1]
         for i in range(n):
-            self._insertFunctionStep('sleepStep')
+            self._insertFunctionStep(self.sleepStep)
 
 class ConcurrencyProtocol(SleepingProtocol):
     """ Protocol to test concurrency access to sets"""

pyworkflowtests/tests/test_protocol_execution.py

@@ -22,11 +22,13 @@
 # *  e-mail address 'scipion@cnb.csic.es'
 # *
 # **************************************************************************
+import threading
 
 import pyworkflow.tests as pwtests
 import pyworkflow.mapper as pwmapper
 import pyworkflow.protocol as pwprot
 from pyworkflow.project import Project
+from pyworkflow.protocol.constants import VOID_GPU
 
 
 # TODO: this test seems not to be finished.
@@ -70,3 +72,64 @@ class TestProtocolExecution(pwtests.BaseTest):
         prot2 = mapper2.selectById(prot.getObjId())
         
         self.assertEqual(prot.endTime.get(), prot2.endTime.get())
+
+    def test_gpuSlots(self):
+        """ Test gpu slots are properly composed in combination of threads"""
+
+        # Test basic GPU setu methods
+        stepExecutor = pwprot.ThreadStepExecutor(None, 1, gpuList=None)
+
+
+        self.assertEqual(stepExecutor.cleanVoidGPUs([0,1]), [0,1],
+                         "CleanVoidGpus does not work in absence of void GPUS")
+
+        self.assertEqual(stepExecutor.cleanVoidGPUs([0, VOID_GPU]), [0],
+                         "CleanVoidGpus does not work with a void GPU")
+
+        self.assertEqual(stepExecutor.cleanVoidGPUs([VOID_GPU, VOID_GPU]), [],
+                         "CleanVoidGpus does not work with all void GPU")
+
+
+        currThread = threading.currentThread()
+        currThread.thId = 1
+        self.assertEqual(stepExecutor.getGpuList(),[], "Gpu list should be empty")
+
+        # 2 threads 1 GPU
+        stepExecutor = pwprot.ThreadStepExecutor(None, 2, gpuList=[1])
+        self.assertEqual(stepExecutor.getGpuList(),[1], "Gpu list should be [1]")
+
+        currThread.thId = 2
+        self.assertEqual(stepExecutor.getGpuList(),[], "Gpu list should be empty after a second request")
+
+
+        # 2 threads 3 GPUs
+        stepExecutor = pwprot.ThreadStepExecutor(None, 2, gpuList=[0,1,2])
+        self.assertEqual(stepExecutor.getGpuList(),[0,1], "Gpu list should be [0,1]")
+
+        currThread.thId = 1
+        self.assertEqual(stepExecutor.getGpuList(),[2], "Gpu list should be [2] after a second request")
+
+
+        # 2 threads 4 GPUs with void gpus
+        stepExecutor = pwprot.ThreadStepExecutor(None, 2, gpuList=[0,1,2, VOID_GPU])
+        self.assertEqual(stepExecutor.getGpuList(),[0,1], "Gpu list should be [0,1]")
+
+        currThread.thId = 2
+        self.assertEqual(stepExecutor.getGpuList(),[2], "Gpu list should be [2] after a second request without the void gpu")
+
+        # less GPUs than threads. No extension should happen
+        stepExecutor = pwprot.ThreadStepExecutor(None, 4, gpuList=[0, VOID_GPU, 2])
+        self.assertEqual(stepExecutor.getGpuList(), [0], "Gpu list should not be extended")
+
+        currThread.thId = 1
+        self.assertEqual(stepExecutor.getGpuList(), [2],
+                         "Gpu list should be [2] after a second request, skipping the VOID gpu")
+
+        currThread.thId = 3
+        self.assertEqual(stepExecutor.getGpuList(), [], "Gpu list should be empty ather all GPU slots are busy")
+
+
+
+
+
+

{scipion_pyworkflow-3.8.0.dist-info → scipion_pyworkflow-3.9.0.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: scipion-pyworkflow
-Version: 3.8.0
+Version: 3.9.0
 Summary: Simple workflow platform used in scientific applications, initially developed within the Scipion framework for image processing in Electron Microscopy.
 Home-page: https://github.com/scipion-em/scipion-pyworkflow
 Author: J.M. De la Rosa Trevin, Roberto Marabini, Grigory Sharov, Josue Gomez Blanco, Pablo Conesa, Yunior Fonseca Reyna

{scipion_pyworkflow-3.8.0.dist-info → scipion_pyworkflow-3.9.0.dist-info}/RECORD

@@ -1,10 +1,10 @@
 pyworkflow/__init__.py,sha256=Wr-MVKMQJy_Cy-rpPPB0-pyv8-8tx7GPPaLSNBrV1AI,1246
-pyworkflow/config.py,sha256=a6TyBwKFvq79dQMamA4D5dPULWfSKfIBbsRT4NdlA94,22048
-pyworkflow/constants.py,sha256=LEuEXv7rXBSl2YyTQ27X4iK4-NJYPHWi3ibLXkt4F1k,7319
+pyworkflow/config.py,sha256=_sq6YCRfcfE4WUNXLShgbICbBeTSLpD2KmPVapR1Wos,22306
+pyworkflow/constants.py,sha256=sFArdG6tm4jPDBkoWOTMYbxGvx6TxRA5-Q24_kgOTpk,7447
 pyworkflow/exceptions.py,sha256=3VFxuNJHcIWxRnLPR0vYg0RFAQMmxPBJZLZSi87VI8E,507
-pyworkflow/object.py,sha256=D5pLvHezEIXB1J_Lxc1CXF_s5ZEZ1r-pj1QAI1CQL24,55070
-pyworkflow/plugin.py,sha256=wl1n-qxBZitm5CHm6uiUIp99eOv6TxxRKLxygxcK1KM,28805
-pyworkflow/template.py,sha256=JtdK2AKgaAdu-SuovqNqn5W-ojmtw3SfaP2bOzSy_IA,10460
+pyworkflow/object.py,sha256=yX3tBUuBssCI8aWGlTmyEKzFE59dJq_7NqllouVzMk0,55069
+pyworkflow/plugin.py,sha256=JJm5plPyOnPAR4To6I5rXVIBda-1Dg-53zicdnLSrac,28858
+pyworkflow/template.py,sha256=uScWMZCR3U6ishDlx7QGDDr8B_aLpKXoh8zOhqAirCY,10463
 pyworkflow/viewer.py,sha256=vA6VxYuxmCwMjIxCIdrp_G-R-nVo-0TA8p1rSl24EOY,11386
 pyworkflow/wizard.py,sha256=nXuk_qMUVlQNa6nB6GCt0CoFQ_P2dnJbGWdwtpDG2tQ,2633
 pyworkflow/apps/__init__.py,sha256=doupoWHiPmpEwa7o7ro7suxYYjj7h-912kc-fxwnhfE,1187
@@ -20,59 +20,59 @@ pyworkflow/apps/pw_sync_data.py,sha256=rwAShzTuVlCDaLKMLeuY1cPSLyWSP9-1mNTgIgCX4
 pyworkflow/apps/pw_viewer.py,sha256=dlvIPzBa_citucezBd0Cl0uCND4eXWYgXF-lZpXWzBc,2595
 pyworkflow/gui/__init__.py,sha256=D7PVYky81yTcqvkGEtw1CIxRkICpsn4TO5z5lJg84yM,1373
 pyworkflow/gui/browser.py,sha256=Be4keeCLl32t5HzrqOdMhk_6oJ93Q5WX5FKy8iO9hYU,25590
-pyworkflow/gui/canvas.py,sha256=UXJvAZO1BDbDEUwn-o9S5dEY9zi-tg3eidpV3edVKPU,42094
-pyworkflow/gui/dialog.py,sha256=HMtS3hD9VmfmGGH3mp8OJHD5FkUQ3en4DHLXKXdG0hw,35260
-pyworkflow/gui/form.py,sha256=wwldS8YDCT_z5Ixi9N_Oed1hfEJT1hpaqDzUDgNyx-k,103714
-pyworkflow/gui/graph.py,sha256=t1NwCr8dJxCr8iSQRB-HT3jwG9x_t8ryM5i2WnGY45E,8735
-pyworkflow/gui/graph_layout.py,sha256=imsZibqNj_5JfRq70PLvWoZ-VNZeMTMnxyRpz7SNey4,9516
+pyworkflow/gui/canvas.py,sha256=M_pD7QbqnYq9MY145WN6BYzeIAo0cIkbxLrZKNE80yg,42106
+pyworkflow/gui/dialog.py,sha256=35YpyOmUsmiVqdjU-k4AFDG7PKq0te4AUR-oTofhxEk,35329
+pyworkflow/gui/form.py,sha256=ho_HeqB4e4lPaM1WclVYzfYYMpnwZm_xYCRrlXDQf0E,104000
+pyworkflow/gui/graph.py,sha256=HSZ5PfFKkhv3tzl0o9UtSU_FfDevKR2M3L9HgU9_Gkc,8747
+pyworkflow/gui/graph_layout.py,sha256=R9uTc_Ei4oWAeCkZ3d78JjC1QKV7HPJaDLyhvSfK7NE,9520
 pyworkflow/gui/gui.py,sha256=pEtBYo0bf5grDX8e6Ju920aSDGiWno85pxrSxcMrSTY,20627
 pyworkflow/gui/matplotlib_image.py,sha256=vGD5LKp-AZvu_kXa7Mf_jtOQfZ-QcRUoTMnicNrMqUk,7821
 pyworkflow/gui/plotter.py,sha256=E9ld43B-AzYhV1PIEPBy2TQWyzoia4y5lD5rqJOQlZY,8464
 pyworkflow/gui/text.py,sha256=cmAhCm_gCJMi5UDl9br8FoexHeDQjby8dplw9ZiUIgM,28576
 pyworkflow/gui/tooltip.py,sha256=OceYHesQQ7vSH7FRJmbvDBXjVG1IKkX1A8vocb64ljE,8531
 pyworkflow/gui/tree.py,sha256=TglyZ-snZHp6hTIRRp4o5Fvzf8Z7hogpFaZ4DVgMGvo,23084
-pyworkflow/gui/widgets.py,sha256=LK61vmojXUKL-M72rkRdN_TlurDTqiZOMeRDRa0KI08,11141
+pyworkflow/gui/widgets.py,sha256=Zz69960wUO_Lu0_37j_IcUTTN70XiF_XKu5f2hoOx7g,11137
 pyworkflow/gui/project/__init__.py,sha256=rZmTvqocYhsD2PH1owu7Dkgs7dMrGx7VbKOCpaqvLzM,1118
-pyworkflow/gui/project/base.py,sha256=rr6hFRZ8N_ey0smw_UePDlk1prMWBRmQJ-hZUyV-MSs,8045
+pyworkflow/gui/project/base.py,sha256=N64UXy5ep7RFweyBWTDro9UESgKRRAIvlRuotWIaO_w,7871
 pyworkflow/gui/project/constants.py,sha256=rORDaNCdAFRFcBmjRt2PJ1cXpSmYgDLfbvrbqZh1Bb0,4943
 pyworkflow/gui/project/labels.py,sha256=7m4heNcN3zXe0BHuFJyQrPD5hC8LiHnlu1sizRc8l_Y,7680
-pyworkflow/gui/project/project.py,sha256=xL7jNTU6gHfgm9UaxORfwZAy8ytg40yadE-s9WaHOQE,18280
+pyworkflow/gui/project/project.py,sha256=LgpwqnOIr6RPqBb76fOoWrPrpdBzQCQev7JuRLj4lEA,18852
 pyworkflow/gui/project/searchprotocol.py,sha256=xv1nDk7tigQ4M7SLc_ZqGY8c6kG1crjP_xCp9KJjVZ0,5753
 pyworkflow/gui/project/searchrun.py,sha256=xCGxs7L9PMk48ei9Gi3HI2PAOYEM-zXR5vRfAQRLHKI,7269
-pyworkflow/gui/project/steps.py,sha256=jF-G7KmSu28xzv0QSixq4-srDL38PTlnUXCzAbLwylo,5965
+pyworkflow/gui/project/steps.py,sha256=fq0WhPBoByFs8Lr-qmGZ-aFC4lx3XCF2zM2DOBd_KAc,6053
 pyworkflow/gui/project/utils.py,sha256=H9oFPzz9lAjAI4PRYSYyYniTBn98Y6YSs0bE0qXpMEM,11923
 pyworkflow/gui/project/variables.py,sha256=UczW6yQqzssj3eETEKaae5GSpsWr04ItPrr5o2WBnu4,7496
-pyworkflow/gui/project/viewdata.py,sha256=tDsvWkOi0IqNloZoGS6O-J1fsreF7PFVJq8po0_SnLM,18185
+pyworkflow/gui/project/viewdata.py,sha256=Xoxy1YTqKGSU2DUiM7j23gf-yv4ToNmX_zWgRpVZDo4,18187
 pyworkflow/gui/project/viewprojects.py,sha256=ZcWzfFLVeCKzVsFboxquzBsOagEoPW0CpVUQ8ZLpvQE,22516
-pyworkflow/gui/project/viewprotocols.py,sha256=hZXfCIxNDlb3qcp8F4bDvSCupEaAqdN19e1WWO9pIo0,83928
-pyworkflow/gui/project/viewprotocols_extra.py,sha256=riF1XK8UcfjmPyJiFqTidx0izIryxdQKVk6JfqxITcI,21213
+pyworkflow/gui/project/viewprotocols.py,sha256=sykimCQUHCUG5Irjr8__sIZJgJEzG-wgZb7SrdpzkVE,84014
+pyworkflow/gui/project/viewprotocols_extra.py,sha256=d3YZ3KAU8wMdn8psOvDxUDxcN0prruRNdb31bMa8_M0,21250
 pyworkflow/mapper/__init__.py,sha256=HM7tMMd1r2BZ8hbPGryUQ80E4evY46zIVjiZ3edg_Mg,1186
 pyworkflow/mapper/mapper.py,sha256=YGVlBK3btHL-jLID6v2jLy7Mb9Wu47lxfZjHdzz0hMg,7726
-pyworkflow/mapper/sqlite.py,sha256=hpnn5DntDqip3CxeMx32aR9_wtAgqX_vM5KGfO-pjfk,65216
+pyworkflow/mapper/sqlite.py,sha256=II53wccWx7kRWLFEKyHKTyX9yr5Qz5-d_IxmSdgjdVc,65269
 pyworkflow/mapper/sqlite_db.py,sha256=HYSXe_fRX1NBKDs6l2zefdO4PMEajnoDMXPjmoFs8Kc,5602
 pyworkflow/project/__init__.py,sha256=05l9tvr3FfBNL3XNZSbFCs6yO-1HbFlmFu204w7yyKk,1369
-pyworkflow/project/config.py,sha256=5dDprBMIxhWNoN4kY8eAfhsyU8mGtMFNrlk76G3hUG4,13519
-pyworkflow/project/manager.py,sha256=gPotIuk6IRQwAmsNq410LJmuxvfWSvhObbg88bPsN-M,6706
-pyworkflow/project/project.py,sha256=FYTH0S2sahM5yIMQsre7DVLF6oKrjeJsFkRjrXU43DE,83346
+pyworkflow/project/config.py,sha256=F9H1vLJJ9vPyT6zeSqHX69o-wbaN8hWueOuDn53evjc,13692
+pyworkflow/project/manager.py,sha256=bk5hFDuIJqEgELU0plFG-RycGhhFfcJxmPp_qhFj1mE,6758
+pyworkflow/project/project.py,sha256=PqFX6njzAtmmpi-1O4ZeRmwYr7Won8HPuldSG8tl-4Q,83816
 pyworkflow/project/scripts/clean_projects.py,sha256=5qsLHIyJk7sZJUrfSp8sbMRYTkbZ2purtc-5JJb8awM,2600
 pyworkflow/project/scripts/config.py,sha256=VF4NMsykWzQjCQHRwnfFwxFq2PSk57Ni3TpgTh3nF3w,2933
-pyworkflow/project/scripts/create.py,sha256=tlQ3ic9w29lMybPAlZnULIAObHzlhGQgyzp7-OBDLg8,2508
+pyworkflow/project/scripts/create.py,sha256=cmyYJoKP4J9goPRRtQRM9jrsfp-DARHS0XeKJ0ObSCE,2781
 pyworkflow/project/scripts/edit_workflow.py,sha256=AhwwEFjEgTRR8LUZ4tBSoY2jprDgUmmgFR3FcIU5uno,2940
 pyworkflow/project/scripts/fix_links.py,sha256=i6hRbczKk3A6GpRtBSp357nT4p7fdbW84enaPx0ueAI,958
 pyworkflow/project/scripts/load.py,sha256=oA_xZjO94N-hZohLZQXBKEdmE7BZuWxH7x9gPx9lMj8,2696
 pyworkflow/project/scripts/refresh.py,sha256=-uw41ouFgEzIF4iBXFRzAI79Lna7fqMmEKhRciSUpTA,2603
-pyworkflow/project/scripts/schedule.py,sha256=Pi0RtTJ08r1niRoP1b1tfwBbcMyfQV0WFTcHbF82wLY,3987
+pyworkflow/project/scripts/schedule.py,sha256=mUUlaUSiMvA_skES6WOL0Mg-j7-S9Cx6dN-6wx5ZM6Y,3989
 pyworkflow/project/scripts/stack2volume.py,sha256=ZV8qtPj4qWg2LJSXHBnx-S8L8pyGGQiWuRcWu3OP8qI,940
 pyworkflow/project/scripts/stop.py,sha256=vCeCxkwPCoUkLbna5HCxKWJ1hrsI4U19Sg9JD4ksXj8,2427
 pyworkflow/protocol/__init__.py,sha256=bAdIpvUW4GAYdIuv92DZ44-OEkZ7lTtnp1S9T5cwtVs,1413
 pyworkflow/protocol/bibtex.py,sha256=mCUk1Hp5Vp_i2lozDM1BQNOw10e_RSu86oXvrR63sOA,2122
-pyworkflow/protocol/constants.py,sha256=xLtJDUc441YcssGpDEirbX4P2KERhNAdPP6EP_bA3QU,3378
-pyworkflow/protocol/executor.py,sha256=QGY-_ALWcE3l3P9Tgg9ugEJWSAkIlK_fg65ftdruAzE,13202
+pyworkflow/protocol/constants.py,sha256=DfuCs7eub-mLHJjEpHlIG9BW3fUpRwfTVwMYytNWv6U,3392
+pyworkflow/protocol/executor.py,sha256=OxnRGZeJI8vYJ6ZfSWifN043pvdw1vV_x9sjQd57fi8,17745
 pyworkflow/protocol/hosts.py,sha256=B9ENNclqYe75CPqAMOoPjwn-r3ST6HxTewXtsK_zWks,10453
 pyworkflow/protocol/launch.py,sha256=7WKAiHma2tSuhqK4xVnxD_SnVt7Y5qyDFdQwTo8BLF0,11267
 pyworkflow/protocol/package.py,sha256=L6x3HHKtbrhDQRJHD07SG3DQKNMGaRQ0ROoLEY3SuRQ,1444
-pyworkflow/protocol/params.py,sha256=DRpeNIi_uQQ_JbqORq8A7P7yMBQpoj8r-8oBfroNtYI,26338
-pyworkflow/protocol/protocol.py,sha256=xlq3_K7RmuatL-KM9m2K364P6Ft0dPG5r9Fgt0-pI0U,96993
+pyworkflow/protocol/params.py,sha256=gP6QImgULvzCr-f0iseArIp1bjXm1JuUr9padmuMs7M,25901
+pyworkflow/protocol/protocol.py,sha256=Uwa5AT26wlIogPHLgmvqOTcs3tdV-CB88duE1GJKzvc,97219
 pyworkflow/resources/Imagej.png,sha256=nU2nWI1wxZB_xlOKsZzdUjj-qiCTjO6GwEKYgZ5Risg,14480
 pyworkflow/resources/chimera.png,sha256=AKCuwMqmZo0Cg2sddMUjBWUhmAq-nPsAVCBpVrYNeiQ,815
 pyworkflow/resources/fa-exclamation-triangle_alert.png,sha256=31_XvRu0CkJ2dvHSpcBAR43378lIJTWwiag_A7SuUQc,585
@@ -100,13 +100,13 @@ pyworkflow/tests/tests.py,sha256=KgBh_eNHrg3VcYHu-zGye7ot5DzGKFyH8ZI-xABjs98,117
 pyworkflow/utils/__init__.py,sha256=UEd4SxmVd9zv0JElz1J0Sva7klJw3HEKSzwf5a0c-Xc,1429
 pyworkflow/utils/dataset.py,sha256=141u2xb-FTe8nF6OVJBJtTNHWz7eDWd24veBWX7eoTI,14943
 pyworkflow/utils/echo.py,sha256=ZXJRrmxUaTT4Xxf7_pQwg7Th341iFafTs66VEKNOZmE,3442
-pyworkflow/utils/graph.py,sha256=Lozs3Q8rmwKnXMbYYyLLgiN6_lpXSA_tEjgh_bX4BRo,5849
+pyworkflow/utils/graph.py,sha256=z3Hcj0I38du97DQEqNT5gk--SCDTRPlKotaCszoZfX8,4981
 pyworkflow/utils/log.py,sha256=8SIg1jwOKMQzGgDqutB7ZD42ZzLHslxULPvK-f1sDD0,10693
 pyworkflow/utils/path.py,sha256=k689N4OpN8stfZf1KSyF8U2JjELloxymwrsgyu9y2eI,16770
 pyworkflow/utils/process.py,sha256=m6gZ_9vHTJyzXOCGGIIwFCbXXoH7XC-Okn5SJzs1P1U,4717
 pyworkflow/utils/profiler.py,sha256=BC0KkAgfYqf-CV40zLcRxo5Td79f5jw1gzvaDH8iqt8,2218
 pyworkflow/utils/progressbar.py,sha256=VntEF_FTdQHjMKawfR1R4IoNgYNTEMmnLUIDvUXurxk,5903
-pyworkflow/utils/properties.py,sha256=qHakj30QT1twkj71u1JVyHdEiFPUZXWSRVR5_R-GQ1E,23213
+pyworkflow/utils/properties.py,sha256=D1LHkVn0cbxCHhedJE4XAw5ZwOufb_4z48IeJ0L0fWc,23960
 pyworkflow/utils/reflection.py,sha256=48cvIDO73JinBsFn3XMiVR56AcivfdJoiMXGM7ZwUDY,4429
 pyworkflow/utils/utils.py,sha256=t5QVNEI2-RJ1B457mozwJj3c_nwwoT_n4cYT23zoNy8,26205
 pyworkflow/utils/which.py,sha256=KuyKYE4GnkwMpBJoKgOMnx-hNZjHf6OTyqxEsdHIftI,8627
@@ -118,7 +118,7 @@ pyworkflow/webservices/workflowhub.py,sha256=hA4RETMXmxUF-l605INS1TCT2nWnUwOIjrY
 pyworkflowtests/__init__.py,sha256=RoXNgyShL7moVEXaimTDdfY1fU26dgGKtdjO4JfBQOk,1686
 pyworkflowtests/bibtex.py,sha256=1f9PjkRO937PB2b-ax-eKLwjU4YY11M5px3dk3xWQzw,2102
 pyworkflowtests/objects.py,sha256=f4lRHxKg6A23tAhF-8qHXslDPaHBdy4qk72TfR5g_dg,26651
-pyworkflowtests/protocols.py,sha256=pNU5wAJuKLzjE449QLi1uemHqxSFTXTyU0JFifK2o0o,5520
+pyworkflowtests/protocols.py,sha256=gSCtA5IuG0a_rvAjZ8uZQIxOr6gmrjfvaaqFnpGY2ds,5529
 pyworkflowtests/tests/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 pyworkflowtests/tests/test_canvas.py,sha256=_d3Xccp7BuwdbkNC5cTTNVXH425V4k1hKYuhUsn4JtU,2685
 pyworkflowtests/tests/test_domain.py,sha256=8IvVTZllgtqNT66rYLlaHKka9zt-0_tuNQ_69pZDFeE,1624
@@ -126,15 +126,15 @@ pyworkflowtests/tests/test_logs.py,sha256=lNHPtvPIWk_nRy3L3B2GriroMwgNmTZ_-RHRw0
 pyworkflowtests/tests/test_mappers.py,sha256=2DBzZaM8rIKQTSU9xWAsNGwZkpUPB1FBwgwMmNNbVkg,15423
 pyworkflowtests/tests/test_object.py,sha256=WVWP11oXNeOTUDJ5BLFR32MmQi6C5Y6KjfVRBf9fu3w,18577
 pyworkflowtests/tests/test_project.py,sha256=RBrhpIs45dWLrciHqzpj4ORyLZCNvjm8fytIolOZ9Ko,1685
-pyworkflowtests/tests/test_protocol_execution.py,sha256=vpjoy__CoWOHt9xmqYXCf6qEWEYZz8qidGTaLYVm3Iw,2607
+pyworkflowtests/tests/test_protocol_execution.py,sha256=uOokU-bgbd-1GqnEKNPcr02vJsAJvjHQ7I3vXNH9jCw,5081
 pyworkflowtests/tests/test_protocol_export.py,sha256=z18nKPkOnrYLMU8KqcnVsF6-ylQ8d9mw-qFJWRn4Qdw,3291
 pyworkflowtests/tests/test_protocol_output.py,sha256=8gnIFMRNmwPnIBRCG29WHJB6mqK4FLGn1jiXHtTD6pY,5980
 pyworkflowtests/tests/test_streaming.py,sha256=vOH-bKCM-fVUSsejqNnCX5TPXhdUayk9ZtJHsNVcfCY,1615
 pyworkflowtests/tests/test_utils.py,sha256=_pTYGCuXC7YNMdCBzUYNfSBCR3etrHsxHfIhsQi4VPc,7465
-scipion_pyworkflow-3.8.0.dist-info/LICENSE.txt,sha256=ixuiBLtpoK3iv89l7ylKkg9rs2GzF9ukPH7ynZYzK5s,35148
-scipion_pyworkflow-3.8.0.dist-info/METADATA,sha256=A-juSUF4DN1a1bGPKIfEBkhU8HJTaNa2Bo-y6CvoG_Q,4681
-scipion_pyworkflow-3.8.0.dist-info/WHEEL,sha256=UvcQYKBHoFqaQd6LKyqHw9fxEolWLQnlzP0h_LgJAfI,91
-scipion_pyworkflow-3.8.0.dist-info/dependency_links.txt,sha256=D7r_CPRjYRtBb3q_OBocTdsaeXI5TwnYMu5ri0JFtzs,84
-scipion_pyworkflow-3.8.0.dist-info/entry_points.txt,sha256=oR-zwsOICjEPINm-FWVPp-RfnpXZanVal4_XG6BWkkQ,127
-scipion_pyworkflow-3.8.0.dist-info/top_level.txt,sha256=PzyJteyenJwLjAeSFP7oYrTN_U71GABQwET8oLZkh9k,27
-scipion_pyworkflow-3.8.0.dist-info/RECORD,,
+scipion_pyworkflow-3.9.0.dist-info/LICENSE.txt,sha256=ixuiBLtpoK3iv89l7ylKkg9rs2GzF9ukPH7ynZYzK5s,35148
+scipion_pyworkflow-3.9.0.dist-info/METADATA,sha256=Zx2E1Sc_peac-1ECc8s0euuB5qjSbJzEKxAkK6PuIso,4681
+scipion_pyworkflow-3.9.0.dist-info/WHEEL,sha256=GV9aMThwP_4oNCtvEC2ec3qUYutgWeAzklro_0m4WJQ,91
+scipion_pyworkflow-3.9.0.dist-info/dependency_links.txt,sha256=D7r_CPRjYRtBb3q_OBocTdsaeXI5TwnYMu5ri0JFtzs,84
+scipion_pyworkflow-3.9.0.dist-info/entry_points.txt,sha256=oR-zwsOICjEPINm-FWVPp-RfnpXZanVal4_XG6BWkkQ,127
+scipion_pyworkflow-3.9.0.dist-info/top_level.txt,sha256=PzyJteyenJwLjAeSFP7oYrTN_U71GABQwET8oLZkh9k,27
+scipion_pyworkflow-3.9.0.dist-info/RECORD,,

{scipion_pyworkflow-3.8.0.dist-info → scipion_pyworkflow-3.9.0.dist-info}/WHEEL

@@ -1,5 +1,5 @@
 Wheel-Version: 1.0
-Generator: setuptools (74.0.0)
+Generator: setuptools (75.1.0)
 Root-Is-Purelib: true
 Tag: py3-none-any