scilens 0.3.7__py3-none-any.whl → 0.3.9__py3-none-any.whl

scilens/report/templates/js_chartlibs_plotly.js

@@ -3,40 +3,58 @@
   const plotly = {
     add: function(elt, meta, items) {
       const series = []
+      let yaxis2 = null;
+      
+      // 
+
       items.forEach(item => {
-        series.push({
+        const serie = {
           name: item.name,
           x:    item.x_data,
           y:    item.y_data,
+          // yaxis : 'y1', // required if there are multiple y axes
           // mode: 'lines+markers',
           mode: 'lines',
           line:   { color: item.color, width: 3 },
-          marker: { color: item.color, size: 6 },
-        })
-      });
-      Plotly.newPlot(
-        elt,
-        series,
-        {
-          title: { text: meta.title, font: { weight: 800 } },
-          xaxis: { title: meta.xaxis },
-          yaxis: { title: meta.yaxis },
-          autosize: true,
-          // showlegend: false,
-          // legend: {
-          //   x: 1,
-          //   xanchor: 'right',
-          //   y: 1
-          // }
-          // margin: {
-          //   l: 10,
-          //   r: 10,
-          //   b: 10,
-          //   t: 10,
-          //   pad: 0,
-          // },          
+          // marker: { color: item.color, size: 6 },
+        }
+        if (item.special) {
+          switch (item.special) {
+            case 'diff':
+              yaxis2 = {title: 'Difference',overlaying: 'y',side: 'right', color: 'rgba(255, 0, 0, 1)'}
+              serie.line.color = 'rgba(255, 0, 0, 0.5)';
+              serie.yaxis = 'y2';
+              serie.fill = 'tozeroy';
+              serie.fillcolor = 'rgba(255, 0, 0, 0.2)';
+              break;
+          }
         }
-      );
+        // item.special
+        series.push(serie)
+      });
+
+      const layout = {
+        title: { text: meta.title, font: { weight: 800 } },
+        xaxis: { title: meta.xaxis },
+        yaxis: { title: meta.yaxis },
+        autosize: true,
+        // showlegend: false,
+        // legend: {
+        //   x: 1,
+        //   xanchor: 'right',
+        //   y: 1
+        // }
+        // margin: {
+        //   l: 10,
+        //   r: 10,
+        //   b: 10,
+        //   t: 10,
+        //   pad: 0,
+        // },          
+      };
+      if (yaxis2) {layout.yaxis2 = yaxis2;}
+
+      Plotly.newPlot(elt,series,layout);
     },
     add_ys: function(elt, meta, x_data, y_items) {
       this.add(elt, meta, y_items.map((item) => {return {name: item.name, color: item.color, x_data: x_data, y_data: item.data} } ))

scilens/report/templates/js_com_page.js

@@ -190,7 +190,7 @@
       }
     },
     init_page: function() {
-      console.log(parameters)
+      //console.log(parameters)
       build_parameters();
       action.init();
       this.render_page();

scilens/report/templates/js_curvemgr.js

@@ -60,6 +60,8 @@ const CONFIG = {
   display_on_load: false,
   init_width: 600,
   init_height: 400,
+  compare_vs_values: true, 
+  compare_vs_difference: true,
 }
 
 
@@ -79,10 +81,11 @@ const curve_add_chart = function(element_parent, data, zoom) {
     div,
     { title: data.title, xaxis: data.xaxis , yaxis: data.yaxis },
     data.series.map((item) => {return {
-      name:   item.name,
-      color:  item.color,
-      x_data: item.data.map((e) => e[0]),
-      y_data: item.data.map((e) => e[1]),
+      name:    item.name,
+      color:   item.color,
+      x_data:  item.data.map((e) => e[0]),
+      y_data:  item.data.map((e) => e[1]),
+      special: item.special,
     }}),
   )
 };
@@ -198,29 +201,63 @@ CurvesChart.prototype = {
 
       }
       // display each curve test vs reference
-      for (index_curve in chart.curves) {
-        real_index = chart.curves[index_curve]
+      if (CONFIG.compare_vs_values || CONFIG.compare_vs_difference) {
+        for (index_curve in chart.curves) {
+          real_index = chart.curves[index_curve]
 
-        const series = [
-          {
-            name:  "Test",
-            data:  this.curves["test"].curves[real_index].series,
-            color: '#1982c4',
-          },
-          {
-            name:  "Reference",
-            data:  this.curves["reference"].curves[real_index].series,
-            color: '#6a4c93',
-          },
-        ]
-        const data = {
-          title: this.curves["test"].curves[real_index].title + " [Test vs Reference]",
-          xaxis: chart.xaxis,
-          yaxis: chart.yaxis,
-          series : series,
+          const series = [];
+          if (CONFIG.compare_vs_values) {
+            series.push({
+              name:  "Test",
+              data:  this.curves["test"].curves[real_index].series,
+              color: '#1982c4',
+            });
+            series.push({
+              name:  "Reference",
+              data:  this.curves["reference"].curves[real_index].series,
+              color: '#6a4c93',
+            });
+          }
+          if (CONFIG.compare_vs_difference) {
+            series.push({
+              name:  "Difference",
+              data:  this.curves["test"].curves[real_index].series.map((e, i) => {
+                return [e[0], e[1] - this.curves["reference"].curves[real_index].series[i][1]]
+              }),
+              color: '#ffcc00',
+              special: 'diff',
+            });
+          }
+
+          // {
+          //   name:  "Test",
+          //   data:  this.curves["test"].curves[real_index].series,
+          //   color: '#1982c4',
+          // },
+          // {
+          //   name:  "Reference",
+          //   data:  this.curves["reference"].curves[real_index].series,
+          //   color: '#6a4c93',
+          // },
+          // {
+          //   name:  "Difference",
+          //   data:  this.curves["test"].curves[real_index].series.map((e, i) => {
+          //     return [e[0], e[1] - this.curves["reference"].curves[real_index].series[i][1]]
+          //   }),
+          //   color: '#ffcc00',
+          //   special: 'diff',
+          // },          
+          // 
+          const data = {
+            title: this.curves["test"].curves[real_index].title + " [Test vs Reference]",
+            xaxis: chart.xaxis,
+            yaxis: chart.yaxis,
+            series : series,
+          }
+          curve_add_chart((chart.curves.length > 1) ? out.row_2 : out.row_1, data, this.curve_block.zoom);
         }
-        curve_add_chart((chart.curves.length > 1) ? out.row_2 : out.row_1, data, this.curve_block.zoom);
       }
+      
     }
   },
 }

scilens/report/templates/style.css

@@ -37,6 +37,15 @@ padding:15px;
 background-color: #fafafa;
 }
 
+.description {
+  background-color: #eef2f7;
+  border-left: 6px solid #4a90e2;
+  padding: 20px;
+  margin-bottom: 30px;
+  border-radius: 8px;
+  
+}
+
 
 .ERROR    { background-color:#c52a0f20;color:#c52a0f; }
 .WARNING  { background-color:#bcbc0620;color:#bcbc06; }

scilens/report/templates/uti_matrix.js

@@ -21,13 +21,18 @@ function subtractMatrices(A, B) {
     row.map((v, j) => v - B[i][j])
   );
 }
+function absolueMatrice(A) {
+  return A.map(row => row.map(v => Math.abs(v)));
+}
 //
 class Matrix {
-  constructor(data, x, y, name, ref) {
+  constructor(data, x, y, name, x_name, y_name, ref) {
     this.data = data; // Matrix data array[array[float]]
     this.x = x; // X-axis values array[float]
     this.y = y; // Y-axis values array[float]
     this.name = name; // string
+    this.x_name = x_name; // X-axis Name
+    this.y_name = y_name; // Y-axis Name
     this.ref = ref; // Reference matrix data (optional) array[array[float]]
     // // Check if the matrix is valid (rectangular)
     // const rowLength = data[0].length;
@@ -45,31 +50,39 @@ class Matrix {
     // ) { throw new Error("Matrices must have the same dimensions."); }
     return new Matrix(subtractMatrices(this.data, other.data), this.x, this.y, name);
   }
-  ref_diff_data() {
-    return subtractMatrices(this.data, this.ref);
+  ref_diff_abs_data() {
+    return absolueMatrice(subtractMatrices(this.data, this.ref));
   }
+  absolueMatrice
 }
 class MatrixGroup {
   constructor(arr, is_spectro, is_frameseries, has_ref) {
     this.arr = arr; // array of Matrix objects
-    this.is_spectro = is_spectro;
-    this.is_frameseries = is_frameseries;
     this.has_ref = has_ref;
   }
 }
 const MatrixMgmt = {
   groups: [],
-  loadGlobal: function() {
+  loadGlobal: function(has_spectrograms, has_frameseries) {
     // load loop GLOBAL_VARS groups
     const g = GLOBAL_VARS.matrices;
     g.test.forEach((data, i) => {
       const group_data = [];
       const ref = g.reference[i];
       data.datasets.forEach((dataset, j) => {
-        const mat = new Matrix(dataset.data, dataset.x_values, dataset.y_values, data.names[j], ref.datasets[j].data);
+        console.log(dataset);
+        const mat = new Matrix(
+          dataset.data,
+          dataset.x_values,
+          dataset.y_values,
+          data.names[j],
+          dataset.x_name,
+          dataset.y_name,
+          ref.datasets[j].data,
+        );
         group_data.push(mat);
       });
-      const group = new MatrixGroup(group_data, Boolean(data.spectrograms), Boolean(data.frameseries), true);
+      const group = new MatrixGroup(group_data, true);
       this.groups.push(group);
     });
     // IMPORTANT
@@ -78,7 +91,7 @@ const MatrixMgmt = {
     // Init
     this.groups.forEach((group, i) => {
       // Init Spectrograms
-      if (group.is_spectro) {
+      if (has_spectrograms) {
         const spec = new Spectrograms(i, group.arr);
       }
       // Init Frameseries

scilens/report/templates/uti_spectrograms.js

@@ -4,14 +4,15 @@
 //
 function resize22(obj, parent, dir) { // ASSUMPTIONS : obj.size int, "js-plotly-plot"
   // size
-  const size = obj.size + (dir * obj.size * 0.1); // new size
-  obj.size = obj.size + (dir * obj.size * 0.1); // save
+  const w = obj.size[0] + (dir * obj.size[0] * 0.1);
+  const h = obj.size[0] + (dir * obj.size[0] * 0.1);
+  obj.size = [w, h];
   // update widgets
-  const update = { width: size, height: size };
+  const update = { width: w, height: h };
   const nodes = dom.q(parent, ".js-plotly-plot");
   nodes.forEach((node) => {
-    node.style.width  = size + "px";
-    node.style.height = size + "px";
+    node.style.width  = w + "px";
+    node.style.height = h + "px";
     Plotly.relayout(node, update); // update plotly
   });
 }
@@ -19,15 +20,21 @@ function resize22(obj, parent, dir) { // ASSUMPTIONS : obj.size int, "js-plotly-
 //
 //
 const PREFIX = "spectrograms_"; // section prefix
-const DEFAULT_SIZE = 300;
 const COLORSCALE = "Viridis"; // plotly
 const COLORSCALE_DIFF = "RdBu"; // plotly
+const CFG = {
+  "DISPLAY_TESTREF": true, // display test reference
+  "DISPLAY_DIFF": true, // display diff
+  "WIDTH": 300, // default width
+  "HEIGHT": 300, // default height
+}
+
 //
 class Spectrograms {
   constructor(index, arr_mat) {
-    console.log("index data", index);
+    //console.log("index data", index);
     // data
-    this.size = DEFAULT_SIZE;
+    this.size = [CFG.WIDTH, CFG.HEIGHT]; // default size
     this.arr_mat = arr_mat;
     this.elt = dom.get(PREFIX+(1+index));
     // init
@@ -64,13 +71,14 @@ class Spectrograms {
   var_add(idx) {
     const mat = this.arr_mat[idx];
     //
-    const style = "width:"+this.size+"px;height:"+this.size+"px;";
+    const style = "width:"+this.size[0]+"px;height:"+this.size[1]+"px;";
     const attrs = { class: "m-1 shadow-lg" };
     //
-    const templs = [{out:"var", tag:"div", attrs: attrs, style:style} ];
+    const templs = [];
+    if (CFG.DISPLAY_TESTREF) templs.push({out:"var", tag:"div", attrs: attrs, style:style});
     if (mat.ref) {
-      templs.push({out:"ref", tag:"div", attrs: attrs, style:style});
-      templs.push({out:"dif", tag:"div", attrs: attrs, style:style});
+      if (CFG.DISPLAY_TESTREF) templs.push({out:"ref", tag:"div", attrs: attrs, style:style});
+      if (CFG.DISPLAY_DIFF) templs.push({out:"dif", tag:"div", attrs: attrs, style:style});
     }
     const e = {};
     dom.tree(
@@ -81,30 +89,31 @@ class Spectrograms {
       e
     );
 
-    this.add_widget(e["var"], mat.data);
+    if (CFG.DISPLAY_TESTREF) this.add_widget(e["var"], mat, mat.data);
     if (mat.ref) {
-      this.add_widget(e["ref"], mat.ref);
-      this.add_widget(e["dif"], mat.ref_diff_data(), COLORSCALE_DIFF);
+      if (CFG.DISPLAY_TESTREF) this.add_widget(e["ref"], mat, mat.ref, " - Ref.");
+      if (CFG.DISPLAY_DIFF) this.add_widget(e["dif"], mat, mat.ref_diff_abs_data(), " - Diff.", COLORSCALE_DIFF);
     }
   }
   var_rmv(idx) {
     dom.get(this.var_get_id(idx)).remove();
   }
-  add_widget(elt, mat, colorscale=COLORSCALE) {
+  add_widget(elt, mat, matdata, suffix="", colorscale=COLORSCALE) {
     const data = [{
-        z: mat,
+        z: matdata,
         type: 'heatmap',
         colorscale: colorscale,
     }];
 
     const layout = {
-        // title: mat.name,
-        xaxis: { title: 'X' },
-        yaxis: { title: 'Y' }
+        title: mat.name + suffix,
+        xaxis: { title: mat.x_name || 'X' },
+        yaxis: { title: mat.y_name || 'Y' },
     };
 
     Plotly.newPlot(elt, data, layout);        
   }
 }
+Spectrograms.config = function(cfg) {for (k in cfg) {CFG[k] = cfg[k];}};
 w_1.Spectrograms = Spectrograms;
 })(window);

scilens/report/templates/utils_compare_report_anim.js

@@ -1,3 +1,4 @@
+((w_1, undef) => {
 const Anim = function (elt, options, options_2) {
     const that = this;
     // options
@@ -70,4 +71,6 @@ update: function () {
 };
 Anim.create = function(parent, options, options_2) {
     new Anim(parent, options, options_2)
-}
+}
+w_1.Anim = Anim;
+})(window);

scilens/report/templates/utils_compare_report_framesseries.js

@@ -1,3 +1,4 @@
+((w_1, undef) => {
 const Framesseries = function (elt, data, data_ref) {
     const that = this;
     // data
@@ -21,7 +22,7 @@ const Framesseries = function (elt, data, data_ref) {
         // steps
         const steps = []
         data.frames_steps_variable.data.forEach((e,i) => {
-            console.log(e)
+            // console.log(e)
             steps.push({
                 start: e,
                 color: palette.get(i),
@@ -131,7 +132,7 @@ Framesseries.prototype = {
             labels.push({label: "Step", val: step, max: steps.length, color: color, val2: val2})
         }   
         // labels
-        console.log(labels)
+        // console.log(labels)
         this.lab.innerHTML =  labels.map(x => '<span style="padding:3px 5px;background-color:'+x.color+';"><b> ' + x.label + "</b> " + x.val + "/" + x.max + ( x.val2 ? " (" + x.val2 + ")" : "") +"</span>").join(" - ");
 
 
@@ -140,3 +141,5 @@ Framesseries.prototype = {
 Framesseries.create = function(parent, options, options_2) {
     new Framesseries(parent, options, options_2)
 }
+w_1.Framesseries = Framesseries;
+})(window);

scilens/run/standalone_task_runner.py

@@ -4,6 +4,6 @@ from scilens.run.task_context import TaskContext
 from scilens.run.run_task import RunTask
 from scilens.config.models import AppConfig
 class StandaloneTaskRunner:
-	config_path=None
+	config:AppConfig;config_path=None
 	def __init__(A,config):A.config=config_load(config)
 	def process(A,working_dir,origin_working_dir=None):B=TaskContext(config=A.config,config_file=A.config_path,working_dir=working_dir,origin_working_dir=origin_working_dir);C=RunTask(B);D=C.process();return D

scilens/utils/file.py

@@ -26,6 +26,8 @@ def json_load(path):
 	with open(path)as A:return json.load(A)
 def yaml_write(path,data):
 	with open(path,'w')as A:yaml.dump(data,A,default_flow_style=False)
+def yaml_load(path):
+	with open(path)as A:return yaml.safe_load(A)
 def move(source,target):shutil.move(source,target)
 def list_paths_at_depth(root_dir,depth):
 	B=depth;A=root_dir;C=[]

scilens/utils/load_model_from_file.py

@@ -0,0 +1,16 @@
+from pathlib import Path
+from scilens.utils.file import json_load,yaml_load
+def load_model_from_file(cls,path,json=True,yaml=True):
+	C=yaml;B=json;A=path
+	if isinstance(A,str):A=Path(A)
+	if not A.exists():raise FileNotFoundError(f"File {A} does not exist.")
+	if B:
+		try:D=json_load(A)
+		except Exception:
+			if not C:raise ValueError(f"Error during loading JSON file: {A}.")
+	if C:
+		try:D=yaml_load(A)
+		except Exception:
+			if not B:raise ValueError(f"Error during loading YAML file: {A}.")
+	if B and C and not D:raise ValueError(f"Unsupported file format: Supported formats are YAML and JSON.")
+	E=cls(**D);return E

{scilens-0.3.7.dist-info → scilens-0.3.9.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: scilens
-Version: 0.3.7
+Version: 0.3.9
 Summary: A CesGensLaB framework for data collecting and deep analysis
 Home-page: https://scilens.dev
 License: Proprietary

{scilens-0.3.7.dist-info → scilens-0.3.9.dist-info}/RECORD

@@ -5,7 +5,7 @@ scilens/cli/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 scilens/cli/cglb.py,sha256=R0377H5H193DJ_h4hj32m6qvrZrMnSFOxSGVl2FItiU,443
 scilens/cli/config.py,sha256=XVY6q5E9fb6MZzPct4-X7m6e45erpt5MCIuzKTBKPAI,965
 scilens/cli/info.py,sha256=xE7q9epjrCQRL6Agi3nhKsG6Mr3B8HSUFMti-epMoXA,1929
-scilens/cli/main.py,sha256=LljcS0s2E35y4YZpV01GhMhMK9HyRRHYmxc_q_kSurI,6004
+scilens/cli/main.py,sha256=C8EWm6JfTBBH74pR3J-O2ZuPX78VcQ5MWC5iqNUFN6Y,6332
 scilens/components/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 scilens/components/analyse_folder.py,sha256=yqc-dscKaHLZJCYeXGak2v0c3F2aeX0E11AFPfya6r0,208
 scilens/components/compare_2_files.py,sha256=jbZNLbRj3x8TxUADM5QC2u_TGl4I7u5OdaEMh-gMBUk,1713
@@ -13,7 +13,7 @@ scilens/components/compare_errors.py,sha256=vGb4DWP89HMIeBm0dZU2nt-ksppAs_37xtCH
 scilens/components/compare_floats.py,sha256=yYJZ_QpAZUhP1uwNtGshXQLIzKtki9ifCN3hd9AFj2U,5916
 scilens/components/compare_folders.py,sha256=LZ1AuYxLVHMNbtXWXQrdms4vZgOQthvDy-8NFD_EFjc,2617
 scilens/components/compare_models.py,sha256=SCPd747h_nd4ewZsqLB6CFr27v6q99NELJb-gpkdj0o,918
-scilens/components/executor.py,sha256=j5xejkCaaPyl3V38Q4HxxXcAx4Tnj8CILAjSJ1G7OIE,3417
+scilens/components/executor.py,sha256=PLeKolzPd4wPX8e6DdfOb0uHGky3DxTcKN9QtB6oe3Q,3712
 scilens/components/file_reader.py,sha256=7SbKCqb4Co_pqAKX3wweYhqAcVkU7BDlT903sLd76Kc,1407
 scilens/config/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 scilens/config/cli_run_options.py,sha256=Ls7yK5QDUPFbk73nbjGuPvuRbBRYw4Miag5ISpu3prg,281
@@ -23,17 +23,17 @@ scilens/config/models/__init__.py,sha256=eLCW1OLVINewGFy5GXSrOk8Rab_QsgKAuoErBjp
 scilens/config/models/app.py,sha256=JltWRjjqXYkH6rg3OHYhMfkBqHFhZEZdthqES3LxvzY,1453
 scilens/config/models/compare.py,sha256=esRqW3PNVOqkA_mt4_qbS7dVCLulUrZTBUhANQOHoqE,1847
 scilens/config/models/compare_float_thresholds.py,sha256=mHu48-70i3o_qUw6x-1A7XeRwFUNAO6WP6qNPGwAew0,2097
-scilens/config/models/execute.py,sha256=8issd_hg49SdVkDq2TLDB1vBJY4M1t279XERNUd3VVs,2142
+scilens/config/models/execute.py,sha256=Hx3DoDJ0fq7bZruqwtPtSKL6PVOF_LpsaDCLrn5klLk,2325
 scilens/config/models/execute_and_compare.py,sha256=TWL6yXGvQSaaV6nhHqWLvtr3v396APIoDNt0U1TbMro,582
 scilens/config/models/file_reader.py,sha256=c18vKhVcBX4ufpbnCBJyVyAsQtlxpwx0lGVuf1i8EGA,1176
 scilens/config/models/reader_format_cols_curve.py,sha256=eKLvifq1xuN8sPds9ijfru3vgMZ3Odv5tGfeiK4Sfk4,1860
-scilens/config/models/reader_format_csv.py,sha256=si422pyd3kwxXWb4u_L-0dsBxTouHDu2AWdh2a5OfD4,1512
+scilens/config/models/reader_format_csv.py,sha256=EQ1nCYsv6Cf4rtK3AUW5LbJakRcutdaNSl4UN634evs,1708
 scilens/config/models/reader_format_netcdf.py,sha256=k-AMdm239T6I42R8jzyRlPKKJ8zkRrN8XS8yU6ZkFu0,1256
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