scikit-survival 0.26.0__cp312-cp312-win_amd64.whl → 0.27.0__cp312-cp312-win_amd64.whl

{scikit_survival-0.26.0.dist-info → scikit_survival-0.27.0.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: scikit-survival
-Version: 0.26.0
+Version: 0.27.0
 Summary: Survival analysis built on top of scikit-learn
 Author-email: Sebastian Pölsterl <sebp@k-d-w.org>
 License-Expression: GPL-3.0-or-later
@@ -31,16 +31,16 @@ License-File: COPYING
 Requires-Dist: ecos
 Requires-Dist: joblib
 Requires-Dist: numexpr
-Requires-Dist: numpy
+Requires-Dist: numpy>=2.0.0
 Requires-Dist: osqp>=1.0.2
-Requires-Dist: pandas>=2.0.0
-Requires-Dist: scipy>=1.3.2
-Requires-Dist: scikit-learn<1.8,>=1.6.1
+Requires-Dist: pandas>=2.2.0
+Requires-Dist: scipy>=1.13.0
+Requires-Dist: scikit-learn<1.9,>=1.8.0
 Dynamic: license-file
 
 |License| |Docs| |DOI|
 
-|build-tests| |build-windows| |Codecov| |Codacy|
+|build-tests| |Codecov| |Codacy|
 
 ***************
 scikit-survival
@@ -76,10 +76,10 @@ Requirements
 - ecos
 - joblib
 - numexpr
-- numpy
+- numpy 2.0.0 or later
 - osqp
-- pandas 2.0.0 or later
-- scikit-learn 1.6 or 1.7
+- pandas 2.2.0 or later
+- scikit-learn 1.8
 - scipy
 - C/C++ compiler
 
@@ -178,8 +178,4 @@ Please cite the following paper if you are using **scikit-survival**.
   :target: https://github.com/sebp/scikit-survival/actions?query=workflow%3Atests+branch%3Amaster
   :alt: GitHub Actions Tests Status
 
-.. |build-windows| image:: https://ci.appveyor.com/api/projects/status/github/sebp/scikit-survival?branch=master&svg=true
-   :target: https://ci.appveyor.com/project/sebp/scikit-survival
-   :alt: Windows Build Status on AppVeyor
-
 .. _survival analysis: https://en.wikipedia.org/wiki/Survival_analysis

{scikit_survival-0.26.0.dist-info → scikit_survival-0.27.0.dist-info}/RECORD

@@ -1,4 +1,4 @@
-scikit_survival-0.26.0.dist-info/licenses/COPYING,sha256=Czg9WmPaZE9ijZnDOXbqZIftiaqlnwsyV5kt6sEXHms,35821
+scikit_survival-0.27.0.dist-info/licenses/COPYING,sha256=Czg9WmPaZE9ijZnDOXbqZIftiaqlnwsyV5kt6sEXHms,35821
 sksurv/__init__.py,sha256=y_H9kC05lnKq8z8qPnZJZVt79ILJhMH4bkCsohCbvV8,5336
 sksurv/base.py,sha256=FqiHfSFH6fdRzi49Eu3HT08hYxd9yrbdvX0-wSse9qc,4488
 sksurv/column.py,sha256=Kuh1P2mQhHsZgohl2V1iLEGyjIZ3809QqIZa6XDZU7M,7073
@@ -6,13 +6,13 @@ sksurv/compare.py,sha256=XmVNu-cnXk8M9rwm-qgWnxO_pgzDIH4lcZWkd7sVHJM,4543
 sksurv/docstrings.py,sha256=FGFChjoUjOMWxBz1_mZ2ffgond4e-cGMq8NfOM8S7oc,3400
 sksurv/exceptions.py,sha256=WopRsYNia5MQTvvVXL3U_nf418t29pplfBz6HFtmt1M,819
 sksurv/functions.py,sha256=lOquoM6P6B8WCSBWZFyT0uuKBRXl7zSRkzWwQuHsxTU,4012
-sksurv/metrics.py,sha256=HavsO3Ekh_ZZUlJbvzA_LPZA8ViI49pBJQSnDEHcHOI,42269
+sksurv/metrics.py,sha256=RZBRQaMBSYxSNdcfPrrxWnlQgBssjEj-3lKT7ul4gOU,42277
 sksurv/nonparametric.py,sha256=bxig1gErSkrhvY1HUP99C5wzPS6JapVYBvOc5b7yUFw,32659
 sksurv/preprocessing.py,sha256=zjvxrpxZxBgA8QOP5yBc_dAE5QWLRSMerbKJBE5So2o,7169
-sksurv/testing.py,sha256=ygxdvA4IZsPtvQtN39hh0kwg2jzFROWNNfjXvIXez3s,5943
+sksurv/testing.py,sha256=wxHys1bjqzZKrZ5-rp2sXKjlcTNh-fHmSks-fT_sPjs,6257
 sksurv/util.py,sha256=Ml7t7u7qONmohFTEAPMQI6IClv3IpJa6MIs_bL5FoME,16225
 sksurv/bintrees/__init__.py,sha256=z0GwaTPCzww2H2aXF28ubppw0Oc4umNTAlFAKu1VBJc,742
-sksurv/bintrees/_binarytrees.cp312-win_amd64.pyd,sha256=w9KFz6R3YPxZlnLNhl2LmlzDhfvGzZwGHPpZkfUCB2Q,65536
+sksurv/bintrees/_binarytrees.cp312-win_amd64.pyd,sha256=z__jMWZoovYuZHoMXR39AivNolrgKDUCZGVV2xlZVgg,65536
 sksurv/datasets/__init__.py,sha256=lDHdxi0FcMHWKyWTovynHnV5B3B5Y4qh8pNRk9to9nE,373
 sksurv/datasets/base.py,sha256=TKMgBrhD0bB0pldgzVgaW58eEa1WSfIq4vId3o2XlQI,26236
 sksurv/datasets/data/GBSG2.arff,sha256=oX_UM7Qy841xBOArXBkUPLzIxNTvdtIJqpxXsqGGw9Q,26904
@@ -24,18 +24,18 @@ sksurv/datasets/data/flchain.arff,sha256=4LVUyEe-45ozaWPy0VkN-1js_MNsKw1gs2E-JRy
 sksurv/datasets/data/veteran.arff,sha256=LxZtbmq4I82rcB24JeJTYRtlgwPc3vM2OX5hg-q7xTw,5408
 sksurv/datasets/data/whas500.arff,sha256=dvqRzx-nwgSVJZxNVE2zelnt7l3xgzFtMucB7Wux574,28292
 sksurv/ensemble/__init__.py,sha256=aBjRTFm8UE5sTew292-qcplLUCc6owAfY6osWlj-VSM,193
-sksurv/ensemble/_coxph_loss.cp312-win_amd64.pyd,sha256=d8WDxLbXobYguDUKJoSJFzW_3P72dkq_wyx8ignSxvk,142336
+sksurv/ensemble/_coxph_loss.cp312-win_amd64.pyd,sha256=1ffrgoRc5bwq4GYnl932b5Ucwxr0Iovb5rDLzPm4I4c,142336
 sksurv/ensemble/boosting.py,sha256=PierryBGYz_RBHuhBpwImQpxiLCsuZm73FrSPTTBgUg,63136
 sksurv/ensemble/forest.py,sha256=esiN6cUajfzdw-eMiXmwm9Eljs59Z0y1hmf83s2xx5Q,36170
 sksurv/ensemble/survival_loss.py,sha256=v3tSou5t1YY6lBydAZYZ66DLqAirvRhErqW1dZYrTWE,6093
 sksurv/io/__init__.py,sha256=dalzZGTrvekCM8wwsB636rg1dwDkQtDWaBOw7TpHr5U,94
 sksurv/io/arffread.py,sha256=qg76GNSN0OwMTsjsjoIxAVORyn3QKx6St-h4kinQOGM,2841
-sksurv/io/arffwrite.py,sha256=uZxsLtGdYyMsY1T62HRCNrgAOa30OBYzbbpArvcfq40,5616
+sksurv/io/arffwrite.py,sha256=1s2XoXRaTkVj7XyJ8FDHz2uCg2oqmC9V0PMW3_AkJ6A,5611
 sksurv/kernels/__init__.py,sha256=R1if2sVd_0_f6LniIGUR0tipIfzRKpzgGYnvrVZZvHM,78
-sksurv/kernels/_clinical_kernel.cp312-win_amd64.pyd,sha256=1dqsClx8MAUf_CQMdpS81wCcjgxChoAtMMVfMAqO7js,150016
+sksurv/kernels/_clinical_kernel.cp312-win_amd64.pyd,sha256=GTM3OHq0RWw5aBm4NhfFQpnh3KYw0mPtovcTgSoGRks,150016
 sksurv/kernels/clinical.py,sha256=8FzyMVLdj68YXdEjj_e1IA9_fR2-9yOabfEbPv4VdJk,11800
 sksurv/linear_model/__init__.py,sha256=dO6Mr3wXk6Q-KQEuhpdgMeY3ji8ZVdgC-SeSRnrJdmw,155
-sksurv/linear_model/_coxnet.cp312-win_amd64.pyd,sha256=N0T2vLQqF1NbWi0nCx0Ts8j9LfbT7oOy0PCisJaui_Q,94208
+sksurv/linear_model/_coxnet.cp312-win_amd64.pyd,sha256=coDtBjFl9B2juFbsBspBbPAb7qeiUfnBvAjLSb-GuQY,94208
 sksurv/linear_model/aft.py,sha256=z3GhH6YztcF25v3A2CJAqIK19XEfqUPV-nI0bKgb6h0,7766
 sksurv/linear_model/coxnet.py,sha256=M5IMDA73LHjqxM8jzA4cya7dIKUsOa6FlonLlnFKdDU,23148
 sksurv/linear_model/coxph.py,sha256=ckZSYTl6e_NIBzGi0WvbF9AyfZyvZ30x1VX-HpHdzbU,22826
@@ -44,15 +44,15 @@ sksurv/meta/base.py,sha256=AdhIkZi9PvucZ3B2lhhFQpQbwp8EUCDUVOiaev_UsX8,1472
 sksurv/meta/ensemble_selection.py,sha256=MBFTcvO9FKJMJkr5Ys6MHp-BQPSq0T9RcrteZjZRHWA,27292
 sksurv/meta/stacking.py,sha256=t5tDtSDKEHURJqdLpo1-L7cQZv6d5N9fbMi87xMj_Dw,13534
 sksurv/svm/__init__.py,sha256=CSceYEcBPGKRcJZ4R0u7DzwictGln_weLIsbt2i5xeU,339
-sksurv/svm/_minlip.cp312-win_amd64.pyd,sha256=et0SnGMKWaeH4KHdcn5G8IEY96Nb9BBB4Hu-F-13osM,147968
-sksurv/svm/_prsvm.cp312-win_amd64.pyd,sha256=ROI2f90EEmkFGujVW1U9HXE-GJCnQkKHCrDU2W0XafY,145408
+sksurv/svm/_minlip.cp312-win_amd64.pyd,sha256=o73KZQ94BdN4cdUH_YZ40Kz0ojzl-spoVVw9vxLPvQw,148480
+sksurv/svm/_prsvm.cp312-win_amd64.pyd,sha256=EVLvt_oUswT3n_Bp_qJUsmCW4u2iVIw9W40t1acAFXI,145408
 sksurv/svm/minlip.py,sha256=ZgUP_Zx5oduh1VhC-OhYjlJ28J1VhPUHReFirHnEcJw,25671
 sksurv/svm/naive_survival_svm.py,sha256=B7NHFE_BNpyzQKJjUmLZBqmw6sbqlHrGS_6iQLKu2yA,9568
 sksurv/svm/survival_svm.py,sha256=fgF1lSbt_jTy9Ykigg4fEWrsmqae_NyO401KTNG2Kpo,46222
 sksurv/tree/__init__.py,sha256=ozb0fhURX-lpiSiHZd0DMnjkqhC0XOC2CTZq0hEZLPw,65
-sksurv/tree/_criterion.cp312-win_amd64.pyd,sha256=octAocqCfwCQDt8nuqM6rTFQsi6zW6NgpWYG-kpZtao,163840
+sksurv/tree/_criterion.cp312-win_amd64.pyd,sha256=ihmEiHlrJL02uD_IsXaMoP-4xKHU5LdS11XbDtS5iX0,167424
 sksurv/tree/tree.py,sha256=4FMKf862hGaZnObIytz_XiLL2fPD11Z0w5zUO2zp7cM,32782
-scikit_survival-0.26.0.dist-info/METADATA,sha256=XFQGFOQAxBnsmOaJPL8UTXCP66g8KbSiKXhs9Jwe8G8,7365
-scikit_survival-0.26.0.dist-info/WHEEL,sha256=8UP9x9puWI0P1V_d7K2oMTBqfeLNm21CTzZ_Ptr0NXU,101
-scikit_survival-0.26.0.dist-info/top_level.txt,sha256=fPkcFA-XQGbwnD_ZXOvaOWmSd34Qezr26Mn99nYPvAg,7
-scikit_survival-0.26.0.dist-info/RECORD,,
+scikit_survival-0.27.0.dist-info/METADATA,sha256=xaC_67dBglseZ5obMIN9AOyYtlMJSwf7dMHNUrUBQS8,7131
+scikit_survival-0.27.0.dist-info/WHEEL,sha256=4SIlGrTWEevUMa-6zmQ9aBHcYatnnG9aOHYILIJiCXU,102
+scikit_survival-0.27.0.dist-info/top_level.txt,sha256=fPkcFA-XQGbwnD_ZXOvaOWmSd34Qezr26Mn99nYPvAg,7
+scikit_survival-0.27.0.dist-info/RECORD,,

{scikit_survival-0.26.0.dist-info → scikit_survival-0.27.0.dist-info}/WHEEL

@@ -1,5 +1,5 @@
 Wheel-Version: 1.0
-Generator: setuptools (80.9.0)
+Generator: setuptools (80.10.2)
 Root-Is-Purelib: false
 Tag: cp312-cp312-win_amd64
 

sksurv/io/arffwrite.py

@@ -172,7 +172,7 @@ def _write_data(data, fp):
             return "?"
         return str(x)
 
-    data = data.applymap(to_str)
+    data = data.map(to_str)
     n_rows = data.shape[0]
     for i in range(n_rows):
         str_values = list(data.iloc[i, :].apply(_check_str_array))

sksurv/metrics.py

@@ -510,7 +510,7 @@ def cumulative_dynamic_auc(survival_train, survival_test, estimate, times, tied_
             # to make sure that the curve starts at (0, 0)
             tp_no_ties = np.r_[0, tp_no_ties]
             fp_no_ties = np.r_[0, fp_no_ties]
-            scores[i] = np.trapz(tp_no_ties, fp_no_ties)
+            scores[i] = np.trapezoid(tp_no_ties, fp_no_ties)
 
     if n_times == 1:
         mean_auc = scores[0]
@@ -780,7 +780,7 @@ def integrated_brier_score(survival_train, survival_test, estimate, times):
         raise ValueError("At least two time points must be given")
 
     # Computing the IBS
-    ibs_value = np.trapz(brier_scores, times) / (times[-1] - times[0])
+    ibs_value = np.trapezoid(brier_scores, times) / (times[-1] - times[0])
 
     return ibs_value
 

sksurv/testing.py

@@ -119,7 +119,7 @@ class FixtureParameterFactory:
         return cases
 
 
-def check_module_minimum_version(module, version_str):
+def check_module_minimum_version(module, min_version_str, max_version_str=None):
     """
     Check whether a module of a specified minimum version is available.
 
@@ -127,8 +127,10 @@ def check_module_minimum_version(module, version_str):
     ----------
     module : str
         Name of the module.
-    version_str : str
+    min_version_str : str
         Minimum version of the module.
+    max_version_str : str, optional
+        Maximum version of the module (excluding).
 
     Returns
     -------
@@ -137,14 +139,17 @@ def check_module_minimum_version(module, version_str):
     """
     try:
         module_version = parse(version(module))
-        required_version = parse(version_str)
-        return module_version >= required_version
+        required_min_version = parse(min_version_str)
+        if max_version_str is None:
+            return module_version >= required_min_version
+        required_max_version = parse(max_version_str)
+        return required_min_version <= module_version < required_max_version
     except PackageNotFoundError:  # pragma: no cover
         return False
 
 
 def get_pandas_infer_string_context():
-    if check_module_minimum_version("pandas", "2.3.0"):
+    if check_module_minimum_version("pandas", "2.3.0", "3.0.0"):
         return (
             pytest.param(pd.option_context("future.infer_string", False), id="infer_string=False"),
             pytest.param(pd.option_context("future.infer_string", True), id="infer_string=True"),