scikit-survival 0.26.0__cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl

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Files changed (58) hide show
  1. scikit_survival-0.26.0.dist-info/METADATA +185 -0
  2. scikit_survival-0.26.0.dist-info/RECORD +58 -0
  3. scikit_survival-0.26.0.dist-info/WHEEL +6 -0
  4. scikit_survival-0.26.0.dist-info/licenses/COPYING +674 -0
  5. scikit_survival-0.26.0.dist-info/top_level.txt +1 -0
  6. sksurv/__init__.py +183 -0
  7. sksurv/base.py +115 -0
  8. sksurv/bintrees/__init__.py +15 -0
  9. sksurv/bintrees/_binarytrees.cpython-311-x86_64-linux-gnu.so +0 -0
  10. sksurv/column.py +204 -0
  11. sksurv/compare.py +123 -0
  12. sksurv/datasets/__init__.py +12 -0
  13. sksurv/datasets/base.py +614 -0
  14. sksurv/datasets/data/GBSG2.arff +700 -0
  15. sksurv/datasets/data/actg320.arff +1169 -0
  16. sksurv/datasets/data/bmt.arff +46 -0
  17. sksurv/datasets/data/breast_cancer_GSE7390-metastasis.arff +283 -0
  18. sksurv/datasets/data/cgvhd.arff +118 -0
  19. sksurv/datasets/data/flchain.arff +7887 -0
  20. sksurv/datasets/data/veteran.arff +148 -0
  21. sksurv/datasets/data/whas500.arff +520 -0
  22. sksurv/docstrings.py +99 -0
  23. sksurv/ensemble/__init__.py +2 -0
  24. sksurv/ensemble/_coxph_loss.cpython-311-x86_64-linux-gnu.so +0 -0
  25. sksurv/ensemble/boosting.py +1564 -0
  26. sksurv/ensemble/forest.py +902 -0
  27. sksurv/ensemble/survival_loss.py +151 -0
  28. sksurv/exceptions.py +18 -0
  29. sksurv/functions.py +114 -0
  30. sksurv/io/__init__.py +2 -0
  31. sksurv/io/arffread.py +91 -0
  32. sksurv/io/arffwrite.py +181 -0
  33. sksurv/kernels/__init__.py +1 -0
  34. sksurv/kernels/_clinical_kernel.cpython-311-x86_64-linux-gnu.so +0 -0
  35. sksurv/kernels/clinical.py +348 -0
  36. sksurv/linear_model/__init__.py +3 -0
  37. sksurv/linear_model/_coxnet.cpython-311-x86_64-linux-gnu.so +0 -0
  38. sksurv/linear_model/aft.py +208 -0
  39. sksurv/linear_model/coxnet.py +592 -0
  40. sksurv/linear_model/coxph.py +637 -0
  41. sksurv/meta/__init__.py +4 -0
  42. sksurv/meta/base.py +35 -0
  43. sksurv/meta/ensemble_selection.py +724 -0
  44. sksurv/meta/stacking.py +370 -0
  45. sksurv/metrics.py +1028 -0
  46. sksurv/nonparametric.py +911 -0
  47. sksurv/preprocessing.py +195 -0
  48. sksurv/svm/__init__.py +11 -0
  49. sksurv/svm/_minlip.cpython-311-x86_64-linux-gnu.so +0 -0
  50. sksurv/svm/_prsvm.cpython-311-x86_64-linux-gnu.so +0 -0
  51. sksurv/svm/minlip.py +695 -0
  52. sksurv/svm/naive_survival_svm.py +249 -0
  53. sksurv/svm/survival_svm.py +1236 -0
  54. sksurv/testing.py +155 -0
  55. sksurv/tree/__init__.py +1 -0
  56. sksurv/tree/_criterion.cpython-311-x86_64-linux-gnu.so +0 -0
  57. sksurv/tree/tree.py +790 -0
  58. sksurv/util.py +416 -0
sksurv/datasets/data/veteran.arff ADDED
@@ -0,0 +1,148 @@
1
+ % Taken from http://lib.stat.cmu.edu/datasets/veteran
2
+ @relation Veteran_s_Administration_Lung_Cancer_Trial
3
+ @attribute Treatment {standard,test}
4
+ @attribute Celltype {adeno,large,smallcell,squamous}
5
+ @attribute Survival_in_days numeric
6
+ @attribute Status {censored,dead}
7
+ @attribute Karnofsky_score numeric
8
+ @attribute Months_from_Diagnosis numeric
9
+ @attribute Age_in_years numeric
10
+ @attribute Prior_therapy {no,yes}
11
+ @data
12
+ standard,squamous,72,dead,60,7,69,no
13
+ standard,squamous,411,dead,70,5,64,yes
14
+ standard,squamous,228,dead,60,3,38,no
15
+ standard,squamous,126,dead,60,9,63,yes
16
+ standard,squamous,118,dead,70,11,65,yes
17
+ standard,squamous,10,dead,20,5,49,no
18
+ standard,squamous,82,dead,40,10,69,yes
19
+ standard,squamous,110,dead,80,29,68,no
20
+ standard,squamous,314,dead,50,18,43,no
21
+ standard,squamous,100,censored,70,6,70,no
22
+ standard,squamous,42,dead,60,4,81,no
23
+ standard,squamous,8,dead,40,58,63,yes
24
+ standard,squamous,144,dead,30,4,63,no
25
+ standard,squamous,25,censored,80,9,52,yes
26
+ standard,squamous,11,dead,70,11,48,yes
27
+ standard,smallcell,30,dead,60,3,61,no
28
+ standard,smallcell,384,dead,60,9,42,no
29
+ standard,smallcell,4,dead,40,2,35,no
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+ standard,smallcell,54,dead,80,4,63,yes
31
+ standard,smallcell,13,dead,60,4,56,no
32
+ standard,smallcell,123,censored,40,3,55,no
33
+ standard,smallcell,97,censored,60,5,67,no
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+ standard,smallcell,153,dead,60,14,63,yes
35
+ standard,smallcell,59,dead,30,2,65,no
36
+ standard,smallcell,117,dead,80,3,46,no
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+ standard,smallcell,16,dead,30,4,53,yes
38
+ standard,smallcell,151,dead,50,12,69,no
39
+ standard,smallcell,22,dead,60,4,68,no
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+ standard,smallcell,56,dead,80,12,43,yes
41
+ standard,smallcell,21,dead,40,2,55,yes
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+ standard,smallcell,18,dead,20,15,42,no
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+ standard,smallcell,139,dead,80,2,64,no
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+ standard,smallcell,20,dead,30,5,65,no
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+ standard,smallcell,31,dead,75,3,65,no
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+ standard,smallcell,52,dead,70,2,55,no
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+ standard,smallcell,287,dead,60,25,66,yes
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+ standard,smallcell,18,dead,30,4,60,no
49
+ standard,smallcell,51,dead,60,1,67,no
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+ standard,smallcell,122,dead,80,28,53,no
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+ standard,smallcell,27,dead,60,8,62,no
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+ standard,smallcell,54,dead,70,1,67,no
53
+ standard,smallcell,7,dead,50,7,72,no
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+ standard,smallcell,63,dead,50,11,48,no
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+ standard,smallcell,392,dead,40,4,68,no
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+ standard,smallcell,10,dead,40,23,67,yes
57
+ standard,adeno,8,dead,20,19,61,yes
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+ standard,adeno,92,dead,70,10,60,no
59
+ standard,adeno,35,dead,40,6,62,no
60
+ standard,adeno,117,dead,80,2,38,no
61
+ standard,adeno,132,dead,80,5,50,no
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+ standard,adeno,12,dead,50,4,63,yes
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+ standard,adeno,162,dead,80,5,64,no
64
+ standard,adeno,3,dead,30,3,43,no
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+ standard,adeno,95,dead,80,4,34,no
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+ standard,large,177,dead,50,16,66,yes
67
+ standard,large,162,dead,80,5,62,no
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+ standard,large,216,dead,50,15,52,no
69
+ standard,large,553,dead,70,2,47,no
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+ standard,large,278,dead,60,12,63,no
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+ standard,large,12,dead,40,12,68,yes
72
+ standard,large,260,dead,80,5,45,no
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+ standard,large,200,dead,80,12,41,yes
74
+ standard,large,156,dead,70,2,66,no
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+ standard,large,182,censored,90,2,62,no
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+ standard,large,143,dead,90,8,60,no
77
+ standard,large,105,dead,80,11,66,no
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+ standard,large,103,dead,80,5,38,no
79
+ standard,large,250,dead,70,8,53,yes
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+ standard,large,100,dead,60,13,37,yes
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+ test,squamous,999,dead,90,12,54,yes
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+ test,squamous,112,dead,80,6,60,no
83
+ test,squamous,87,censored,80,3,48,no
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+ test,squamous,231,censored,50,8,52,yes
85
+ test,squamous,242,dead,50,1,70,no
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+ test,squamous,991,dead,70,7,50,yes
87
+ test,squamous,111,dead,70,3,62,no
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+ test,squamous,1,dead,20,21,65,yes
89
+ test,squamous,587,dead,60,3,58,no
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+ test,squamous,389,dead,90,2,62,no
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+ test,squamous,33,dead,30,6,64,no
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+ test,squamous,25,dead,20,36,63,no
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+ test,squamous,357,dead,70,13,58,no
94
+ test,squamous,467,dead,90,2,64,no
95
+ test,squamous,201,dead,80,28,52,yes
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+ test,squamous,1,dead,50,7,35,no
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+ test,squamous,30,dead,70,11,63,no
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+ test,squamous,44,dead,60,13,70,yes
99
+ test,squamous,283,dead,90,2,51,no
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+ test,squamous,15,dead,50,13,40,yes
101
+ test,smallcell,25,dead,30,2,69,no
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+ test,smallcell,103,censored,70,22,36,yes
103
+ test,smallcell,21,dead,20,4,71,no
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+ test,smallcell,13,dead,30,2,62,no
105
+ test,smallcell,87,dead,60,2,60,no
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+ test,smallcell,2,dead,40,36,44,yes
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+ test,smallcell,20,dead,30,9,54,yes
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+ test,smallcell,7,dead,20,11,66,no
109
+ test,smallcell,24,dead,60,8,49,no
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+ test,smallcell,99,dead,70,3,72,no
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+ test,smallcell,8,dead,80,2,68,no
112
+ test,smallcell,99,dead,85,4,62,no
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+ test,smallcell,61,dead,70,2,71,no
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+ test,smallcell,25,dead,70,2,70,no
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+ test,smallcell,95,dead,70,1,61,no
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+ test,smallcell,80,dead,50,17,71,no
117
+ test,smallcell,51,dead,30,87,59,yes
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+ test,smallcell,29,dead,40,8,67,no
119
+ test,adeno,24,dead,40,2,60,no
120
+ test,adeno,18,dead,40,5,69,yes
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+ test,adeno,83,censored,99,3,57,no
122
+ test,adeno,31,dead,80,3,39,no
123
+ test,adeno,51,dead,60,5,62,no
124
+ test,adeno,90,dead,60,22,50,yes
125
+ test,adeno,52,dead,60,3,43,no
126
+ test,adeno,73,dead,60,3,70,no
127
+ test,adeno,8,dead,50,5,66,no
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+ test,adeno,36,dead,70,8,61,no
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+ test,adeno,48,dead,10,4,81,no
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+ test,adeno,7,dead,40,4,58,no
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+ test,adeno,140,dead,70,3,63,no
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+ test,adeno,186,dead,90,3,60,no
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+ test,adeno,84,dead,80,4,62,yes
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+ test,adeno,19,dead,50,10,42,no
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+ test,adeno,45,dead,40,3,69,no
136
+ test,adeno,80,dead,40,4,63,no
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+ test,large,52,dead,60,4,45,no
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+ test,large,164,dead,70,15,68,yes
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+ test,large,19,dead,30,4,39,yes
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+ test,large,53,dead,60,12,66,no
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+ test,large,15,dead,30,5,63,no
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+ test,large,43,dead,60,11,49,yes
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+ test,large,340,dead,80,10,64,yes
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+ test,large,133,dead,75,1,65,no
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+ test,large,111,dead,60,5,64,no
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+ test,large,231,dead,70,18,67,yes
147
+ test,large,378,dead,80,4,65,no
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+ test,large,49,dead,30,3,37,no
sksurv/datasets/data/whas500.arff ADDED
@@ -0,0 +1,520 @@
1
+ % Taken from http://www.umass.edu/statdata/statdata/data/
2
+ @RELATION DataTable
3
+ @ATTRIBUTE age numeric
4
+ @ATTRIBUTE gender {0,1}
5
+ @ATTRIBUTE hr numeric
6
+ @ATTRIBUTE sysbp numeric
7
+ @ATTRIBUTE diasbp numeric
8
+ @ATTRIBUTE bmi numeric
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+ @ATTRIBUTE cvd {0,1}
10
+ @ATTRIBUTE afb {0,1}
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+ @ATTRIBUTE sho {0,1}
12
+ @ATTRIBUTE chf {0,1}
13
+ @ATTRIBUTE av3 {0,1}
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+ @ATTRIBUTE miord {0,1}
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+ @ATTRIBUTE mitype {0,1}
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+ @ATTRIBUTE los numeric
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+ @ATTRIBUTE lenfol numeric
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+ @ATTRIBUTE fstat {0,1}
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+
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+ @DATA
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