scikit-survival 0.25.0__cp312-cp312-manylinux2014_x86_64.manylinux_2_17_x86_64.whl

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  1. scikit_survival-0.25.0.dist-info/METADATA +185 -0
  2. scikit_survival-0.25.0.dist-info/RECORD +58 -0
  3. scikit_survival-0.25.0.dist-info/WHEEL +6 -0
  4. scikit_survival-0.25.0.dist-info/licenses/COPYING +674 -0
  5. scikit_survival-0.25.0.dist-info/top_level.txt +1 -0
  6. sksurv/__init__.py +183 -0
  7. sksurv/base.py +115 -0
  8. sksurv/bintrees/__init__.py +15 -0
  9. sksurv/bintrees/_binarytrees.cpython-312-x86_64-linux-gnu.so +0 -0
  10. sksurv/column.py +205 -0
  11. sksurv/compare.py +123 -0
  12. sksurv/datasets/__init__.py +12 -0
  13. sksurv/datasets/base.py +614 -0
  14. sksurv/datasets/data/GBSG2.arff +700 -0
  15. sksurv/datasets/data/actg320.arff +1169 -0
  16. sksurv/datasets/data/bmt.arff +46 -0
  17. sksurv/datasets/data/breast_cancer_GSE7390-metastasis.arff +283 -0
  18. sksurv/datasets/data/cgvhd.arff +118 -0
  19. sksurv/datasets/data/flchain.arff +7887 -0
  20. sksurv/datasets/data/veteran.arff +148 -0
  21. sksurv/datasets/data/whas500.arff +520 -0
  22. sksurv/docstrings.py +99 -0
  23. sksurv/ensemble/__init__.py +2 -0
  24. sksurv/ensemble/_coxph_loss.cpython-312-x86_64-linux-gnu.so +0 -0
  25. sksurv/ensemble/boosting.py +1564 -0
  26. sksurv/ensemble/forest.py +902 -0
  27. sksurv/ensemble/survival_loss.py +151 -0
  28. sksurv/exceptions.py +18 -0
  29. sksurv/functions.py +114 -0
  30. sksurv/io/__init__.py +2 -0
  31. sksurv/io/arffread.py +89 -0
  32. sksurv/io/arffwrite.py +181 -0
  33. sksurv/kernels/__init__.py +1 -0
  34. sksurv/kernels/_clinical_kernel.cpython-312-x86_64-linux-gnu.so +0 -0
  35. sksurv/kernels/clinical.py +348 -0
  36. sksurv/linear_model/__init__.py +3 -0
  37. sksurv/linear_model/_coxnet.cpython-312-x86_64-linux-gnu.so +0 -0
  38. sksurv/linear_model/aft.py +208 -0
  39. sksurv/linear_model/coxnet.py +592 -0
  40. sksurv/linear_model/coxph.py +637 -0
  41. sksurv/meta/__init__.py +4 -0
  42. sksurv/meta/base.py +35 -0
  43. sksurv/meta/ensemble_selection.py +724 -0
  44. sksurv/meta/stacking.py +370 -0
  45. sksurv/metrics.py +1028 -0
  46. sksurv/nonparametric.py +911 -0
  47. sksurv/preprocessing.py +183 -0
  48. sksurv/svm/__init__.py +11 -0
  49. sksurv/svm/_minlip.cpython-312-x86_64-linux-gnu.so +0 -0
  50. sksurv/svm/_prsvm.cpython-312-x86_64-linux-gnu.so +0 -0
  51. sksurv/svm/minlip.py +690 -0
  52. sksurv/svm/naive_survival_svm.py +249 -0
  53. sksurv/svm/survival_svm.py +1236 -0
  54. sksurv/testing.py +108 -0
  55. sksurv/tree/__init__.py +1 -0
  56. sksurv/tree/_criterion.cpython-312-x86_64-linux-gnu.so +0 -0
  57. sksurv/tree/tree.py +790 -0
  58. sksurv/util.py +415 -0
sksurv/datasets/data/cgvhd.arff ADDED
@@ -0,0 +1,118 @@
1
+ @RELATION CGVHD
2
+
3
+ @ATTRIBUTE dx {CML, AML}
4
+ @ATTRIBUTE tx {PB, BM}
5
+ @ATTRIBUTE extent {L, E}
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+ @ATTRIBUTE agvhdgd NUMERIC
7
+ @ATTRIBUTE age NUMERIC
8
+ @ATTRIBUTE survtime NUMERIC
9
+ @ATTRIBUTE reltime NUMERIC
10
+ @ATTRIBUTE agvhtime NUMERIC
11
+ @ATTRIBUTE cgvhtime NUMERIC
12
+ @ATTRIBUTE stat {0, 1}
13
+ @ATTRIBUTE rcens {0, 1}
14
+ @ATTRIBUTE agvh {1, 0}
15
+ @ATTRIBUTE cgvh {1, 0}
16
+ @ATTRIBUTE stnum NUMERIC
17
+
18
+ @DATA
19
+ CML,PB,L,1,36,4.895,4.895,0.099,0.52,0,0,1,1,1
20
+ AML,PB,L,3,57,3.474,0.753,0.101,0.408,1,1,1,1,2
21
+ CML,PB,L,0,48,4.95,4.95,4.95,0.348,0,0,0,1,3
22
+ AML,PB,L,2,52,4.643,4.643,0.057,0.482,0,0,1,1,4
23
+ AML,PB,L,3,45,4.066,4.066,0.137,0.378,0,0,1,1,5
24
+ AML,PB,L,3,47,1.558,0.416,0.055,1.558,1,1,1,0,6
25
+ CML,PB,L,1,40,4.512,4.512,0.09,0.381,0,0,1,1,7
26
+ AML,PB,L,3,38,4.041,4.041,0.082,0.914,0,0,1,1,8
27
+ AML,PB,L,2,41,4.164,4.164,0.055,0.923,0,0,1,1,9
28
+ CML,PB,L,0,50,4.011,4.011,4.011,0.397,0,0,0,1,10
29
+ CML,PB,L,1,56,3.945,3.945,0.047,0.479,0,0,1,1,11
30
+ CML,PB,L,2,56,4.361,4.361,0.079,0.991,0,0,1,1,12
31
+ AML,PB,L,1,54,0.841,0.654,0.077,0.474,1,1,1,1,13
32
+ CML,PB,L,3,25,2.951,2.951,0.164,0.339,0,0,1,1,14
33
+ CML,PB,L,4,40,0.586,0.586,0.055,0.277,1,0,1,1,15
34
+ CML,PB,L,0,41,3.559,3.559,3.559,0.367,0,0,0,1,16
35
+ CML,PB,L,2,57,3.422,3.422,0.131,0.742,0,0,1,1,17
36
+ CML,PB,L,3,62,0.408,0.408,0.408,0.408,0,0,1,1,18
37
+ CML,PB,L,1,29,3.428,3.428,0.09,0.958,0,0,1,1,19
38
+ AML,PB,L,1,44,0.063,0.063,0.014,0.063,1,0,1,0,20
39
+ CML,PB,L,2,40,1.572,1.572,0.09,0.282,1,0,1,1,21
40
+ CML,PB,L,1,54,1.013,1.013,0.093,0.413,1,0,1,1,22
41
+ AML,PB,L,2,37,3.023,3.023,0.074,0.394,0,0,1,1,23
42
+ AML,PB,L,1,58,2.979,2.979,0.079,0.342,0,0,1,1,24
43
+ CML,PB,L,3,39,2.817,2.817,0.049,0.367,0,0,1,1,25
44
+ CML,PB,L,2,31,2.804,2.804,0.137,0.277,0,0,1,1,26
45
+ CML,PB,L,2,45,2.609,2.609,0.252,0.367,0,0,1,1,27
46
+ AML,PB,L,0,48,2.508,2.508,2.508,0.331,0,0,0,1,28
47
+ CML,PB,L,0,53,0.665,0.665,0.665,0.32,1,0,0,1,29
48
+ CML,PB,L,0,29,2.497,2.497,2.497,0.329,0,0,0,1,30
49
+ CML,PB,L,0,27,1.799,1.799,1.799,0.444,1,0,0,1,31
50
+ AML,PB,L,3,45,0.471,0.438,0.071,0.471,1,1,1,0,32
51
+ CML,PB,L,1,39,2.031,2.031,0.112,0.964,0,0,1,1,33
52
+ CML,PB,L,3,49,2.073,2.073,0.063,0.564,0,0,1,1,34
53
+ AML,PB,L,1,37,0.999,0.75,0.274,0.402,1,1,1,1,35
54
+ AML,PB,L,3,53,0.427,0.427,0.055,0.277,1,0,1,1,36
55
+ CML,PB,L,1,48,1.766,1.766,0.216,0.4,0,0,1,1,37
56
+ AML,PB,L,1,59,1.555,1.555,0.178,0.446,0,0,1,1,38
57
+ CML,PB,L,2,33,1.67,1.67,0.11,0.474,0,0,1,1,39
58
+ CML,PB,L,0,38,1.607,1.607,1.607,0.329,0,0,0,1,40
59
+ CML,PB,L,4,37,1.511,1.511,0.055,0.323,0,0,1,1,41
60
+ AML,PB,L,3,41,1.287,1.287,0.049,0.392,0,0,1,1,42
61
+ AML,PB,E,1,64,1.227,1.227,0.23,0.496,0,0,1,1,43
62
+ CML,PB,L,3,32,1.3,1.3,0.063,0.63,0,0,1,1,44
63
+ CML,PB,L,0,41,1.27,1.27,1.27,0.383,0,0,0,1,45
64
+ AML,PB,E,1,56,1.205,1.205,0.074,1.205,0,0,1,0,46
65
+ CML,PB,L,1,50,1.147,1.147,0.131,0.361,0,0,1,1,47
66
+ CML,PB,L,3,37,1.109,1.109,0.055,0.277,0,0,1,1,48
67
+ CML,PB,L,0,27,0.994,0.994,0.994,0.287,0,0,0,1,49
68
+ CML,BM,L,3,45,4.572,4.572,0.066,0.619,0,0,1,1,50
69
+ AML,BM,L,3,45,4.616,4.616,0.101,0.452,0,0,1,1,51
70
+ AML,BM,L,2,42,4.0,4.0,0.027,0.29,0,0,1,1,52
71
+ CML,BM,L,0,22,4.238,4.238,4.238,0.479,0,0,0,1,53
72
+ AML,BM,L,4,47,0.11,0.11,0.074,0.11,1,0,1,0,54
73
+ AML,BM,L,2,48,4.03,4.03,0.101,0.857,0,0,1,1,55
74
+ AML,BM,L,2,49,3.124,2.527,0.115,1.993,1,1,1,1,56
75
+ CML,BM,L,2,38,0.515,0.515,0.079,0.463,1,0,1,1,57
76
+ CML,BM,L,1,39,4.222,3.149,0.085,0.496,0,1,1,1,58
77
+ CML,BM,L,3,41,4.027,4.027,0.104,0.422,0,0,1,1,59
78
+ CML,BM,L,2,46,1.969,1.969,0.038,0.307,1,0,1,1,60
79
+ AML,BM,L,0,24,3.792,3.792,3.792,0.701,0,0,0,1,61
80
+ AML,BM,L,3,32,0.427,0.427,0.041,0.279,1,0,1,1,62
81
+ CML,BM,L,0,36,3.34,3.34,3.34,0.419,0,0,0,1,63
82
+ CML,BM,L,1,53,3.504,0.72,0.112,0.616,0,1,1,1,64
83
+ CML,BM,L,0,52,3.685,3.685,3.685,0.331,0,0,0,1,65
84
+ CML,BM,L,1,59,0.181,0.181,0.049,0.181,1,0,1,0,66
85
+ CML,BM,L,3,42,0.736,0.736,0.09,0.567,1,0,1,1,67
86
+ CML,BM,L,1,65,0.287,0.287,0.052,0.287,1,0,1,0,68
87
+ CML,BM,E,0,60,0.057,0.057,0.057,0.057,0,0,0,0,69
88
+ CML,BM,L,2,61,3.107,3.107,0.088,0.764,0,0,1,1,70
89
+ CML,BM,L,1,55,3.088,3.088,0.11,0.381,0,0,1,1,71
90
+ AML,BM,E,0,48,0.446,0.274,0.446,0.446,1,1,0,0,72
91
+ AML,BM,E,0,49,2.776,2.776,2.776,2.776,0,0,0,0,73
92
+ CML,BM,L,0,36,0.693,0.172,0.693,0.635,1,1,0,1,74
93
+ AML,BM,L,1,48,2.01,2.01,0.077,0.553,0,0,1,1,75
94
+ CML,BM,L,0,47,2.374,2.374,2.374,0.287,0,0,0,1,76
95
+ AML,BM,L,3,43,1.079,1.079,0.088,0.345,1,0,1,1,77
96
+ CML,BM,L,0,56,2.604,2.604,2.604,0.375,0,0,0,1,78
97
+ CML,BM,L,1,56,2.478,2.478,0.17,0.517,0,0,1,1,79
98
+ CML,BM,L,0,36,2.338,2.338,2.338,0.457,0,0,0,1,80
99
+ CML,BM,L,2,52,2.3,2.3,0.049,0.345,0,0,1,1,81
100
+ CML,BM,E,1,44,0.219,0.219,0.145,0.219,1,0,1,0,82
101
+ AML,BM,L,3,32,2.127,2.127,0.118,0.422,0,0,1,1,83
102
+ AML,BM,L,1,44,2.034,2.034,0.096,0.479,0,0,1,1,84
103
+ CML,BM,L,0,45,2.034,2.034,2.034,0.29,0,0,0,1,85
104
+ AML,BM,L,3,48,2.007,2.007,0.088,0.35,0,0,1,1,86
105
+ CML,BM,L,0,48,1.183,1.183,1.183,0.372,0,0,0,1,87
106
+ AML,BM,L,3,42,0.375,0.375,0.096,0.277,1,0,1,1,88
107
+ AML,BM,E,2,24,0.353,0.301,0.096,0.353,1,1,1,0,89
108
+ CML,BM,L,2,26,1.566,1.566,0.137,0.474,0,0,1,1,90
109
+ CML,BM,L,2,34,1.588,1.588,0.129,0.465,0,0,1,1,91
110
+ CML,BM,L,0,57,1.243,1.243,1.243,0.433,0,0,0,1,92
111
+ CML,BM,L,3,51,1.555,1.555,0.09,0.359,0,0,1,1,93
112
+ AML,BM,L,2,54,1.202,1.202,0.192,1.202,0,0,1,0,94
113
+ AML,BM,E,0,20,1.251,1.251,1.251,0.408,0,0,0,1,95
114
+ AML,BM,L,2,39,1.114,1.114,0.074,0.402,0,0,1,1,96
115
+ AML,BM,L,0,49,1.15,1.15,1.15,0.35,0,0,0,1,97
116
+ CML,BM,L,1,42,0.997,0.997,0.142,0.411,0,0,1,1,98
117
+ CML,BM,L,0,44,1.057,1.057,1.057,0.301,0,0,0,1,99
118
+ CML,BM,L,1,56,1.125,1.125,0.129,0.32,0,0,1,1,100