scikit-ops 0.1.0.dev1__py3-none-any.whl → 0.1.0.dev2__py3-none-any.whl

{scikit_ops-0.1.0.dev1.dist-info → scikit_ops-0.1.0.dev2.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.5
 Name: scikit-ops
-Version: 0.1.0.dev1
+Version: 0.1.0.dev2
 Summary: Appose-powered ops, and the machinery for running them.
 Project-URL: homepage, https://github.com/apposed/scikit-ops
 Project-URL: documentation, https://github.com/apposed/scikit-ops/blob/main/README.md
@@ -29,6 +29,9 @@ Classifier: Topic :: Software Development :: Libraries :: Python Modules
 Classifier: Topic :: Utilities
 Requires-Python: >=3.10
 Requires-Dist: numpy
+Requires-Dist: ophelper==0.1.0.dev0
+Requires-Dist: oprunner==0.1.0.dev0
+Requires-Dist: opspec==0.1.0.dev0
 Description-Content-Type: text/markdown
 
 # scikit-ops
@@ -36,12 +39,11 @@ Description-Content-Type: text/markdown
 Image-processing ops you can call directly, run in their own environment, or
 use from napari and Fiji.
 
-This is a development release. It does not work from PyPI yet, because the
-packages it depends on are still in development. Early adopters can install
-it from GitHub:
+This is an early development release, for early adopters. Things will
+change.
 
 ```sh
-pip install git+https://github.com/apposed/scikit-ops
+pip install --pre scikit-ops
 ```
 
 - Source: https://github.com/apposed/scikit-ops

{scikit_ops-0.1.0.dev1.dist-info → scikit_ops-0.1.0.dev2.dist-info}/RECORD

@@ -13,8 +13,8 @@ skop/ops/toy.py,sha256=7VCUBpkINYc6wsHteYvNypN02CsMb_4jXiyw8qGA_fg,3330
 skop/ops/deconvolve/__init__.py,sha256=Xx_xR_3qXdLPfkB5f_onTXLuOQwY2p5Kxn5cgj-D-G0,728
 skop/ops/deconvolve/_edges.py,sha256=nlavBoTw1J8D_uHIMusWgXxBmkuD_OtQyEc7g0ehEBM,3345
 skop/ops/deconvolve/_pad.py,sha256=0k3bnKJOLC9ihVXpS_Rhy-ti2CIeBeqZZmt1-0viaVA,3535
-skop/ops/deconvolve/richardson_lucy.py,sha256=tHNWcgQVpDBBEfzN8DQOy7E39qK1qjufqfXtktu-TGU,3767
-skop/ops/deconvolve/richardson_lucy_cupy.py,sha256=yhlpdgyaj-BpR6zE2oQ8oe8pJF_oEEZ-lgijs-GpEgo,4838
+skop/ops/deconvolve/richardson_lucy.py,sha256=rb_ePL1oLhfstpQqlLsqqw-6K_JC2jMK4JkTZjbSK04,3771
+skop/ops/deconvolve/richardson_lucy_cupy.py,sha256=jyFJxEEiXSyowAElUHAyMW3LAkz2R4giixFS78a2e34,4842
 skop/ops/detect/__init__.py,sha256=mSBR9M8xmfKBjGsN6ZBHqhDZsfkSeC9OJUdKJTq618Y,1145
 skop/ops/detect/_result.py,sha256=hQqN7TgLkK8ZcuydbGogbh1ydMgWqIZNVWLI1br6nq4,1578
 skop/ops/detect/fastsam.py,sha256=g1L4B29H4JtosA1gfuJzWsFlcTaQjbziI3Vf_W99j_w,3517
@@ -51,16 +51,16 @@ skop/ops/workflows/mask/__init__.py,sha256=nKt0l8GrX44sCQ9jTtExBARnNrPZu6Y2AWVsM
 skop/ops/workflows/mask/detect_then_mask.py,sha256=-6DtBC0rdrs1XZKM5rN-ruFO7kRJatIpZGDp4cb0ZA0,4166
 skop/ops/workflows/segment/__init__.py,sha256=RBdgluVVsBwuyPgYdkXbfYnb6sAWUrMQ7vcMV8rxOB4,184
 skop/ops/workflows/segment/connect_2d_in_3d.py,sha256=gV9M5AJQbV0Q4weeP-BF_LHiOg6TSoBUsZhndc5jzhU,6377
-skop/envs/cellpose3/pixi.toml,sha256=hvpkH9eTrUa1xbbJkWM-LwlVXBDJjpRJclCOQvbqUr4,1785
-skop/envs/cupy/pixi.toml,sha256=cQ4bFbGOYMolGnO8IeSO_6JEf806YeXLgtxuybWn09c,1546
-skop/envs/minimal/pixi.toml,sha256=WjHWc35qybmlHaP1KeUD2E-518Rue1fjmNOpIVR1AxE,1200
-skop/envs/pytorch/pixi.toml,sha256=3BU2nmhZMmt6x-MGGu4lQqsnk_1TqUwZwQpi2I7GkY0,3813
-skop/envs/sdeconv/pixi.toml,sha256=o5GhRrDG-ypUj155RriWR0W77CDPBunru-2xriFrLRs,3991
-skop/envs/segment-everything/pixi.toml,sha256=KMq2GUazmzN_Sw3dd5FuuAKMdiMCKtJTcXmhcWoc76Y,3943
-skop/envs/skimage/pixi.toml,sha256=X7W1E79E4UBHYSFiybeCgAYXvKumGCBT00reQnfNOHo,1305
-skop/envs/stardist-tf/pixi.toml,sha256=WyiniXNs6w2_-vz2XX1l_jr62vIVIG2mUOiLeyXV9dg,3656
+skop/envs/cellpose3/pixi.toml,sha256=iITLZdO4M6UdWI8MYbEPsCT_mDG-mlPEvlPoGvhfRn4,1696
+skop/envs/cupy/pixi.toml,sha256=JF-jHEh6WpqyK4CtaFnYzHc7OZRNyf2xezuWYb-MFek,1377
+skop/envs/minimal/pixi.toml,sha256=bZWIUkttfC9klPbRMHl01E4e7OGlrTpJ6V84veVHCr0,1031
+skop/envs/pytorch/pixi.toml,sha256=GdSJ6_lFAmlLLTFHEcmiZmbd_4YWqsgzH9tD_ivIvUY,3644
+skop/envs/sdeconv/pixi.toml,sha256=VNt7w0guatGlS6vU79BqKWKfNKKr9VkfmvU_RwUxi5Y,3822
+skop/envs/segment-everything/pixi.toml,sha256=1EmfO-fL9bj6SH-RnxdZpGw75pXmx6-g4EGxj_sqBJE,3774
+skop/envs/skimage/pixi.toml,sha256=wAfyOSuvsUpmKIj_Hqk3ylxck_uh6wYeMZ2BTjoSBTI,1136
+skop/envs/stardist-tf/pixi.toml,sha256=oIY1XmErvbApe_pLGyQzzSf1K_RgN2rrgAvyVWYfKag,3487
 skop/envs/unseg-cv/pixi.toml,sha256=TwcYzpAnfBd5taAB0b-kRXBhbw5aXHoLzoKRaebvyDw,1065
-scikit_ops-0.1.0.dev1.dist-info/METADATA,sha256=OQS2Vkodps1aCA1rc3ZTRa6fZDL1lGzpMlv-NzsuNoA,1943
-scikit_ops-0.1.0.dev1.dist-info/WHEEL,sha256=W3fkpkm7-wf9vBI5Z-7s0eWkeM-spu78I8Neb98DeEg,87
-scikit_ops-0.1.0.dev1.dist-info/entry_points.txt,sha256=0gDhmxYQNjvBwJO4L0Q2fB-5fIEBbRVUS5u5heCYulQ,43
-scikit_ops-0.1.0.dev1.dist-info/RECORD,,
+scikit_ops-0.1.0.dev2.dist-info/METADATA,sha256=_slMnyAKToraL0PX1q1pY4muQAqPYKpCHit0mQ6ObZA,1935
+scikit_ops-0.1.0.dev2.dist-info/WHEEL,sha256=2iZrJkDIkeDh0k9SikKMqFuRP-ua6mb4Ir1AsER4BEw,87
+scikit_ops-0.1.0.dev2.dist-info/entry_points.txt,sha256=0gDhmxYQNjvBwJO4L0Q2fB-5fIEBbRVUS5u5heCYulQ,43
+scikit_ops-0.1.0.dev2.dist-info/RECORD,,

{scikit_ops-0.1.0.dev1.dist-info → scikit_ops-0.1.0.dev2.dist-info}/WHEEL

@@ -1,4 +1,4 @@
 Wheel-Version: 1.0
-Generator: hatchling 1.32.4
+Generator: hatchling 1.33.0
 Root-Is-Purelib: true
 Tag: py3-none-any

skop/envs/cellpose3/pixi.toml

@@ -29,7 +29,7 @@ cellpose = ">=3,<4"
 [pypi-dependencies]
 # Pinned, as in every environment: a Fiji with no scikit-ops checkout runs
 # this copy. See envs/pytorch for why the pin is deliberate.
-scikit-ops = { git = "https://github.com/apposed/scikit-ops.git", rev = "00925fea3d92f3c974b7b1ec67d6633307d27bcc" }
+scikit-ops = "==0.1.0.dev2"
 
 # PyTorch varies by platform: CUDA builds where there are GPUs to use,
 # and the plain package on Apple Silicon, where MPS comes built in.

skop/envs/cupy/pixi.toml

@@ -28,8 +28,6 @@ cuda-version = "12.2"
 
 [pypi-dependencies]
 # Note: pinned deliberately -- this is part of the environment's identity,
-# so bumping it rebuilds every environment. A checkout still shadows it,
-# because skop.host.INIT puts src at sys.path[0]. See
-# docs/spec/fiji-front-end.md; it becomes an ordinary version constraint
-# once scikit-ops is released.
-scikit-ops = { git = "https://github.com/apposed/scikit-ops.git", rev = "00925fea3d92f3c974b7b1ec67d6633307d27bcc" }
+# so bumping it rebuilds every environment. It comes from PyPI, so building
+# needs no checkout; a checkout still shadows it (see oprunner.host.INIT).
+scikit-ops = "==0.1.0.dev2"

skop/envs/minimal/pixi.toml

@@ -18,8 +18,6 @@ numpy = "*"
 
 [pypi-dependencies]
 # Note: pinned deliberately -- this is part of the environment's identity,
-# so bumping it rebuilds every environment. A checkout still shadows it,
-# because skop.host.INIT puts src at sys.path[0]. See
-# docs/spec/fiji-front-end.md; it becomes an ordinary version constraint
-# once scikit-ops is released.
-scikit-ops = { git = "https://github.com/apposed/scikit-ops.git", rev = "00925fea3d92f3c974b7b1ec67d6633307d27bcc" }
+# so bumping it rebuilds every environment. It comes from PyPI, so building
+# needs no checkout; a checkout still shadows it (see oprunner.host.INIT).
+scikit-ops = "==0.1.0.dev2"

skop/envs/pytorch/pixi.toml

@@ -69,11 +69,9 @@ dinov3 = { git = "https://github.com/facebookresearch/dinov3" }
 instanseg-torch = "*"
 
 # Note: pinned deliberately -- this is part of the environment's identity,
-# so bumping it rebuilds every environment. A checkout still shadows it,
-# because skop.host.INIT puts src at sys.path[0]. See
-# docs/spec/fiji-front-end.md; it becomes an ordinary version constraint
-# once scikit-ops is released.
-scikit-ops = { git = "https://github.com/apposed/scikit-ops.git", rev = "00925fea3d92f3c974b7b1ec67d6633307d27bcc" }
+# so bumping it rebuilds every environment. It comes from PyPI, so building
+# needs no checkout; a checkout still shadows it (see oprunner.host.INIT).
+scikit-ops = "==0.1.0.dev2"
 
 [target.linux-64.dependencies]
 pytorch-gpu = "*"

skop/envs/sdeconv/pixi.toml

@@ -61,11 +61,9 @@ torchvision = "*"
 
 [pypi-dependencies]
 # Note: pinned deliberately -- this is part of the environment's identity,
-# so bumping it rebuilds every environment. A checkout still shadows it,
-# because skop.host.INIT puts src at sys.path[0]. See
-# docs/spec/fiji-front-end.md; it becomes an ordinary version constraint
-# once scikit-ops is released.
-scikit-ops = { git = "https://github.com/apposed/scikit-ops.git", rev = "00925fea3d92f3c974b7b1ec67d6633307d27bcc" }
+# so bumping it rebuilds every environment. It comes from PyPI, so building
+# needs no checkout; a checkout still shadows it (see oprunner.host.INIT).
+scikit-ops = "==0.1.0.dev2"
 sdeconv = ">=1,<2"
 
 # Torch, stated exactly as envs/pytorch states it: CUDA builds where there are

skop/envs/segment-everything/pixi.toml

@@ -70,11 +70,9 @@ setuptools = "<81"
 # why these are two environments and not one. See docs/design/0007.
 [pypi-dependencies]
 # Note: pinned deliberately -- this is part of the environment's identity,
-# so bumping it rebuilds every environment. A checkout still shadows it,
-# because skop.host.INIT puts src at sys.path[0]. See
-# docs/spec/fiji-front-end.md; it becomes an ordinary version constraint
-# once scikit-ops is released.
-scikit-ops = { git = "https://github.com/apposed/scikit-ops.git", rev = "00925fea3d92f3c974b7b1ec67d6633307d27bcc" }
+# so bumping it rebuilds every environment. It comes from PyPI, so building
+# needs no checkout; a checkout still shadows it (see oprunner.host.INIT).
+scikit-ops = "==0.1.0.dev2"
 segment-everything = "==0.3"
 
 # Torch is pinned to the 2.9 series rather than left free. The vendored fork is

skop/envs/skimage/pixi.toml

@@ -21,8 +21,6 @@ pywavelets = "*"  # Note: an optional scikit-image dep, needed by smooth:wavelet
 
 [pypi-dependencies]
 # Note: pinned deliberately -- this is part of the environment's identity,
-# so bumping it rebuilds every environment. A checkout still shadows it,
-# because skop.host.INIT puts src at sys.path[0]. See
-# docs/spec/fiji-front-end.md; it becomes an ordinary version constraint
-# once scikit-ops is released.
-scikit-ops = { git = "https://github.com/apposed/scikit-ops.git", rev = "00925fea3d92f3c974b7b1ec67d6633307d27bcc" }
+# so bumping it rebuilds every environment. It comes from PyPI, so building
+# needs no checkout; a checkout still shadows it (see oprunner.host.INIT).
+scikit-ops = "==0.1.0.dev2"

skop/envs/stardist-tf/pixi.toml

@@ -29,11 +29,9 @@ setuptools = "<81"
 
 [pypi-dependencies]
 # Note: pinned deliberately -- this is part of the environment's identity,
-# so bumping it rebuilds every environment. A checkout still shadows it,
-# because skop.host.INIT puts src at sys.path[0]. See
-# docs/spec/fiji-front-end.md; it becomes an ordinary version constraint
-# once scikit-ops is released.
-scikit-ops = { git = "https://github.com/apposed/scikit-ops.git", rev = "00925fea3d92f3c974b7b1ec67d6633307d27bcc" }
+# so bumping it rebuilds every environment. It comes from PyPI, so building
+# needs no checkout; a checkout still shadows it (see oprunner.host.INIT).
+scikit-ops = "==0.1.0.dev2"
 stardist = "==0.9.1"
 csbdeep = "*"
 

skop/ops/deconvolve/richardson_lucy.py

@@ -38,7 +38,8 @@ _PAD = Overlap(param="psf", of="shape", scale=0.5, only_if="noncirc")
     tile=("image", "mask"),
     split=("y", "x"),
     overlap=_OVERLAP,
-    peak_memory=PeakMemory(10, "float64", pad=_PAD),
+    peak_memory=PeakMemory(10, "float64"),
+    pad=_PAD,
     merge="blend",
 )
 def richardson_lucy(

skop/ops/deconvolve/richardson_lucy_cupy.py

@@ -41,7 +41,8 @@ _PAD = Overlap(param="psf", of="shape", scale=0.5, only_if="noncirc")
     # buffers are live at once by the code -- image, PSF, weights, estimate,
     # two complex OTFs, and an iteration's complex FFTs -- plus cuFFT's
     # workspace. Not yet measured.
-    peak_memory=PeakMemory(16, "float32", pad=_PAD, device="gpu"),
+    peak_memory=PeakMemory(16, "float32", device="gpu"),
+    pad=_PAD,
     merge="blend",
 )
 def richardson_lucy_cupy(